Psyllid ID: psy14484
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| P22805 | 455 | Adenosylmethionine-8-amin | yes | N/A | 0.946 | 0.894 | 0.454 | 1e-102 | |
| O25627 | 436 | Adenosylmethionine-8-amin | yes | N/A | 0.937 | 0.924 | 0.456 | 2e-91 | |
| Q9ZKM5 | 439 | Adenosylmethionine-8-amin | yes | N/A | 0.937 | 0.917 | 0.459 | 4e-89 | |
| P53555 | 448 | L-Lysine-8-amino-7-oxonon | yes | N/A | 0.976 | 0.937 | 0.362 | 2e-81 | |
| Q74CT9 | 453 | Adenosylmethionine-8-amin | yes | N/A | 0.960 | 0.911 | 0.356 | 4e-81 | |
| B7GHM5 | 454 | Adenosylmethionine-8-amin | yes | N/A | 0.948 | 0.898 | 0.363 | 2e-76 | |
| Q2FVJ6 | 452 | Adenosylmethionine-8-amin | yes | N/A | 0.941 | 0.896 | 0.349 | 3e-76 | |
| O66557 | 453 | Adenosylmethionine-8-amin | yes | N/A | 0.946 | 0.898 | 0.359 | 3e-74 | |
| Q58696 | 461 | Adenosylmethionine-8-amin | yes | N/A | 0.962 | 0.898 | 0.351 | 8e-72 | |
| Q5LEY1 | 748 | Biotin biosynthesis bifun | yes | N/A | 0.930 | 0.534 | 0.333 | 1e-71 |
| >sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/427 (45%), Positives = 267/427 (62%), Gaps = 20/427 (4%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+VI+ + W L D +RYLDA+SSWWVNLFGH+N I++AL Q LEH + +N
Sbjct: 32 IVIKKGEGVW---LYDEQNQRYLDAVSSWWVNLFGHANPRISQALSEQAFTLEHTIFANF 88
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+H+P IKL++KL +LT L F+ +G+SA+EVALKMSF Y G KK+F+ L +
Sbjct: 89 SHEPAIKLAQKLVALTPQSLQKVFFADNGSSAIEVALKMSFQYHMQTGKTQKKRFLALTD 148
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
+YHGETLGAL+V + + E+Y LL T PD R K + + A+C F +E
Sbjct: 149 AYHGETLGALSVGGVDLYNEVYQPLLLDTVRAQGPDCFRCPFKHHPDSCHAQCISF-VED 207
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
L+ +H +I A+IIEPL+Q A GM MY +IYL+ +RE+C Y++HLIADEIAVG GRTG
Sbjct: 208 QLRMHHKEITAVIIEPLIQAAAGMKMYPAIYLRRLRELCTQYDVHLIADEIAVGFGRTGT 267
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNP 312
FACE A I PDF+CLSKG+TGGYLPLS+VMTT+ +Y + Y + FLHSHSY+GN
Sbjct: 268 LFACEQANISPDFMCLSKGLTGGYLPLSVVMTTNDVYQAFYDDYATMKAFLHSHSYTGNT 327
Query: 313 LACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVI 369
LAC AL L IF ++ +++Q + M+K+ AL + P + +RQ G + A +++
Sbjct: 328 LACRVALEVLAIFEEEQYIDVVQDKGERMRKL--ALEAFSDLPFVGEYRQVGFVGAIELV 385
Query: 370 I-----EDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM----TSA 420
E E + + AL LL+RP+GN +Y MPPYI+ +E+Q M
Sbjct: 386 ANRDTKEPLPSEERIGYQIYKRALAKGLLIRPLGNVLYFMPPYIITDDEMQFMIQTTKDT 445
Query: 421 IFQTFNE 427
I Q F E
Sbjct: 446 IVQFFEE 452
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Lysinibacillus sphaericus (taxid: 1421) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2 |
| >sp|O25627|BIOA_HELPY Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (861), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 272/427 (63%), Gaps = 24/427 (5%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ N I +K + L D + Y+D ISSWWVNLFGH+N+YI++ LKNQ++ LEHV
Sbjct: 23 QEHQNFPIIPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDDLEHV 82
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK- 128
+L++ +HKP+I LS++L LT + CFY +G+S VE+ALKMS+H + K +KK
Sbjct: 83 LLASFSHKPIITLSQRLCQLTH--MDKCFYADNGSSCVEIALKMSYHAHFLKNQTRRKKL 140
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK-GNSANEIARCA 187
F+ L NSYHGETLGAL+V +++ +K+ YT LL K +TTP +N ++ NS N + R
Sbjct: 141 FLSLSNSYHGETLGALSVGDVKLYKDTYTPLLLKN--LTTPVPKNDHEIENSLNALKR-- 196
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
LL K+ +I A I EPL+QCAG M +Y + YLK +C NIH+I DEIA G
Sbjct: 197 ------LLDKHSEEICAFIAEPLLQCAGNMHIYSARYLKQAVLLCKQKNIHIIFDEIATG 250
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHS 305
GRTG FA E EI PDFLCLSKGI+GGYLPLS ++T ++IYN Y Y+ N FLHS
Sbjct: 251 FGRTGSMFAYEQCEIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEEN-KAFLHS 309
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQ----DMKKITKALTSLITHPKIINFRQKG 361
HSY+GN LAC A ATL+IF K+N++++ + AL L+ + + R G
Sbjct: 310 HSYTGNALACACANATLDIFEKENVIEKNKALSGFIFNTLQNALKPLMEQQVVSDLRHLG 369
Query: 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
M++AF+V I+ E++ S F LK LLLRP+ NT+YLMPPYI+ E++ + +
Sbjct: 370 MVFAFEVFIQTKERL---SLAVFKKTLKKGLLLRPLNNTIYLMPPYIITHEEVKKAVAGL 426
Query: 422 FQTFNEV 428
+ +E+
Sbjct: 427 VEILDEL 433
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q9ZKM5|BIOA_HELPJ Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Helicobacter pylori (strain J99) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (842), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 196/427 (45%), Positives = 274/427 (64%), Gaps = 24/427 (5%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ N I +K + L D + Y+D ISSWWVNLFGH+N+YI++ LKNQ++ LEHV
Sbjct: 23 QEHQNFPIIPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDNLEHV 82
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK- 128
+L++ +HKP+I LS++L LT + CFY +G+S +E+ALKMS+H + K +KK
Sbjct: 83 LLASFSHKPIITLSQRLCQLT--GMDKCFYADNGSSCIEIALKMSYHAHFLKNQTRRKKL 140
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK-GNSANEIARCA 187
F+ L NSYHGETLGAL+V +++ +K+ YT LL K I TP +N ++ NS N + R
Sbjct: 141 FLSLSNSYHGETLGALSVGDVKLYKDTYTPLLLKNLI--TPVPKNDSEIENSLNALKR-- 196
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
LL K+ +I A I EPL+QCAG M +Y + YLK C NIH+I DEIA G
Sbjct: 197 ------LLDKHGEEICAFIAEPLLQCAGNMHIYSAKYLKQAVLWCKQKNIHIIFDEIATG 250
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHS 305
GRTG FA E I PDFLCLSKGI+GGYLPLS ++T ++IYN Y Y+ N FLHS
Sbjct: 251 FGRTGSMFAYEQCGIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEEN-KAFLHS 309
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQR---ISQDM-KKITKALTSLITHPKIINFRQKG 361
HSY+GN LAC A ATL+IF K+N++++ +S+ + + AL LI + + R G
Sbjct: 310 HSYTGNALACACANATLDIFEKENVIEKNKALSEFIFSALQNALKPLIERQVVSDLRHLG 369
Query: 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
M++AF+V ++ E++ S F ALK LLLRP+ NT+YLMPPYI+ EI+ + +
Sbjct: 370 MVFAFEVFLQTKERL---SLAVFKKALKKGLLLRPLNNTIYLMPPYIITHEEIKKAIAGL 426
Query: 422 FQTFNEV 428
+ +E+
Sbjct: 427 VEAIDEL 433
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Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Helicobacter pylori (strain J99) (taxid: 85963) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|P53555|BIOK_BACSU L-Lysine-8-amino-7-oxononanoate aminotransferase OS=Bacillus subtilis (strain 168) GN=bioK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/430 (36%), Positives = 241/430 (56%), Gaps = 10/430 (2%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
K N L+I S + D++GK Y D SS W+N+ GH ++ A+K QL K+
Sbjct: 20 MKDYDENPLIIES---GTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI 76
Query: 67 EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 126
H L +T+ P +L+E L ++ KL FY GA A+E+ALKM+F YW N G K
Sbjct: 77 AHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK 136
Query: 127 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186
+KFI ++N YHG+T+GA++V +I+ F +Y L+ ++Y P G+ +C
Sbjct: 137 QKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC 196
Query: 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ +L LL+++H +IAA+ IE +VQ A GMI+ YL VRE+C Y++ +I DE+A
Sbjct: 197 -LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHS 305
G GRTGK FACEH + PD + KGITGGYLP+++ T+ IY + Y N+ F H
Sbjct: 256 GFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG 315
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
HSY+GN L C AL L +F +NI++++++ KK+ L L P + + RQ G +
Sbjct: 316 HSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCG 375
Query: 366 FDVII--EDPEQIETFSKKFFVAALKNE---LLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+++ E E + + +LK +L RP+G+ + +PP E+ M +
Sbjct: 376 AELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAI 435
Query: 421 IFQTFNEVIT 430
+ Q +EV +
Sbjct: 436 MKQAIHEVTS 445
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Catalyzes the transfer of the alpha-amino group from L-lysine to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). B.subtilis is the only bacterium known to utilize L-lysine as an amino donor in the biosynthesis of DAPA. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q74CT9|BIOA_GEOSL Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 246/429 (57%), Gaps = 16/429 (3%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ S +VI + SW +ID GKRYLD +++ W N+ GH IN+ALK Q+++LEH
Sbjct: 28 EESEPVVIVEGEGSW---IIDSEGKRYLDGVAAIWTNVHGHCRREINEALKAQVDRLEHS 84
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
L LT+ + L+++L+ + L FY +G++AVEV +KM+F +W ++G K +F
Sbjct: 85 TLLGLTNDRAVVLAKRLAEIAPPGLCKVFYSDNGSTAVEVGVKMAFQFWRHEGKPEKSRF 144
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA-- 187
I ++YHG+TLGA++V I F ++ LL T P G A C
Sbjct: 145 ISFTSAYHGDTLGAVSVGGIDLFHGVFRPLLFPTIQAPAPYCYRCPMGRDTP--AACGME 202
Query: 188 -IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ +LE +++ + ++A ++IEPLVQ AGGMI+ +LK VRE+C+ ++I +IADE+AV
Sbjct: 203 CLTELERIMESHAGEVAGLVIEPLVQGAGGMIVQPEGFLKGVRELCDRHDILMIADEVAV 262
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHS 305
G GRTG FAC I PD + LSKGIT GY+PL+ + T ++Y++ + + F H
Sbjct: 263 GFGRTGAMFACGREGITPDIMALSKGITAGYMPLAATLATQQVYDAFLGEYREMKTFFHG 322
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
H+++GNPL C ALA+L++F D +L ++ +K + + L LI + + RQ GMI A
Sbjct: 323 HTFTGNPLGCAVALASLDLFESDRLLGKLPNKIKLLQEKLKGLIELEHVGDVRQCGMIAA 382
Query: 366 FDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+ ++ D E F + + A + + LRP+GN + + PP + EI +
Sbjct: 383 VE-LVRDRATKEPFDWEERVGVRVCLEARTHGVFLRPLGNVIVIFPPLAITAEEIDFLVD 441
Query: 420 AIFQTFNEV 428
+ ++ + V
Sbjct: 442 GLEKSIHTV 450
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|B7GHM5|BIOA_ANOFW Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/418 (36%), Positives = 232/418 (55%), Gaps = 10/418 (2%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
K + LVI S + + L DV+GK Y D SS W+N+ GH I+ A++ QL ++
Sbjct: 27 KDYEQHPLVIESGEGIF---LTDVNGKTYYDGYSSLWLNVHGHRKKEIDDAIRAQLERIA 83
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
H L + P I L+EKL T L FY GA AVE+ALK++F YW N G K+
Sbjct: 84 HSTLLGAANIPAIALAEKLIEWTPSHLTRVFYSDSGAEAVEIALKIAFQYWRNIGENKKQ 143
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187
KF+ L N YHG+T+GA++V I F +Y L+ +Y P + N N + A
Sbjct: 144 KFVTLANGYHGDTVGAISVGAIDIFHTVYEPLMFTSYKAPFPLVYR-HPSNDPNVVRDEA 202
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+ LE L ++H +IAA+I+E ++Q AGGM + YLK V ++C YNI I DE+A G
Sbjct: 203 LGALEALFAEHHEEIAAMIVEGMIQGAGGMHVMPKGYLKGVEQLCRQYNILFIVDEVATG 262
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSH 306
GRTGK FA EH ++ PD + ++KGITGGYLP++ +TT+ IY + Y F H H
Sbjct: 263 FGRTGKRFAIEHEDVQPDIMTVAKGITGGYLPIAATLTTEAIYEAFYGDYTEFKTFFHGH 322
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
SY+GN L C AALA ++IF ++ ++++I Q + + L S + + RQ G++
Sbjct: 323 SYTGNQLGCAAALANIQIFERERLIEQIQQKATFVAEQLASFNELNHVGDVRQLGLMCGI 382
Query: 367 DVIIE----DP-EQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+++ + +P E + + + +L RP+G+ + MPP +++ M +
Sbjct: 383 ELVRDRRTHEPYPWTERMGYRTTLTMREKGMLTRPLGDVIVFMPPLASTFEQLEAMIA 440
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Anoxybacillus flavithermus (strain DSM 21510 / WK1) (taxid: 491915) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q2FVJ6|BIOA_STAA8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/421 (34%), Positives = 252/421 (59%), Gaps = 16/421 (3%)
Query: 5 VYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLN 64
VY K+++ ++I K S+ L D +G +YLD +S WVN+ GH+N Y+NK +K QLN
Sbjct: 24 VYSKEEA---IIIEKGKGSY---LYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLN 77
Query: 65 KLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN---K 121
K+ H L ++ P I+L+EKL +T L FY G+++VE+A+KM++ YW N +
Sbjct: 78 KIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDRE 137
Query: 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 181
+ K KFI L + YHG+T+GA++V I++F +I+ L+ + + +P N ++ N
Sbjct: 138 KYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNY-DTEN 196
Query: 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241
E+ + ++E +L + +++IA I+EPL+Q A G+ ++ +LK V ++C Y++ LI
Sbjct: 197 EMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLIC 256
Query: 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-IN 300
DE+AVG GRTGK FAC H ++ PD +CL K ITGGYLPL+ +T+ KIYN+ ++ +N
Sbjct: 257 DEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSKKIYNAFLSDSHGVN 316
Query: 301 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQK 360
F H H+Y+GN + C AL + ++ K +L I + K L +L H + + R +
Sbjct: 317 TFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGR 376
Query: 361 GMIWAFDVIIED----PEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQH 416
G+++ +++ + P +IE ++ +N L++R + N + +P ++ E++
Sbjct: 377 GLMFGVELVTDKDSKTPLEIEKV-ERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKT 435
Query: 417 M 417
M
Sbjct: 436 M 436
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Staphylococcus aureus (strain NCTC 8325) (taxid: 93061) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|O66557|BIOA_AQUAE Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Aquifex aeolicus (strain VF5) GN=bioA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 151/420 (35%), Positives = 237/420 (56%), Gaps = 13/420 (3%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ NL+ + + W D+ G++Y+DAISS W N+ GH++ +N A+ QL K+ H
Sbjct: 28 REEENLIFERGEGVYLW---DIYGRKYIDAISSLWCNVHGHNHPKLNNAVMKQLCKVAHT 84
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
++ P I L++KL ++ L FY DGA AVE+A+KM++HYW NKG K F
Sbjct: 85 TTLGSSNVPAILLAKKLVEISPEGLNKVFYSEDGAEAVEIAIKMAYHYWKNKGVKGKNVF 144
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK-GNSANEIARCAI 188
I L +YHG+T+GA++V I+ F Y LL KT + +P K G E +
Sbjct: 145 ITLSEAYHGDTVGAVSVGGIELFHGTYKDLLFKTIKLPSPYLYCKEKYGELCPECTADLL 204
Query: 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
LE +LK + I A+I+E +Q A GM+ + +LK VRE+ Y+ +I DE+A G
Sbjct: 205 KQLEDILKSRED-IVAVIMEAGIQAAAGMLPFPPGFLKGVRELTKKYDTLMIVDEVATGF 263
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHS 307
GRTG F CE + PDF+CL KGITGGYLPL+ +TTD+++N+ + F H H+
Sbjct: 264 GRTGTMFYCEQEGVSPDFMCLGKGITGGYLPLAATLTTDEVFNAFLGEFGEAKHFYHGHT 323
Query: 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 367
Y+GN LAC ALA LE+F ++ L+++ +K + + L + + RQ G + +
Sbjct: 324 YTGNNLACSVALANLEVFEEERTLEKLQPKIKLLKERLQEFWELKHVGDVRQLGFMAGIE 383
Query: 368 VIIEDPEQIETF---SKKFFVAALK---NELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+++D E+ E F + F A K + LRP+G+ + LM P ++ ++E+ ++ +
Sbjct: 384 -LVKDKEKGEPFPYGERTGFKVAYKCREKGVFLRPLGDVMVLMMPLVIEEDEMNYVIDTL 442
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q58696|BIOA_METJA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=bioA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 246/438 (56%), Gaps = 24/438 (5%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ S NL+I + ++ LID+ G +YLDA+SS W NLFGHS I +A+KNQ +K+ H
Sbjct: 27 RESKNLIIERGEGNY---LIDIYGNKYLDAVSSIWCNLFGHSRKEIIEAIKNQADKICHS 83
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
L + P I L++KL +T L FY DGA AVE+A+KM++ Y+ +G + KF
Sbjct: 84 TLLGCGNVPSILLAKKLVDITPKHLTKVFYSEDGAEAVEIAIKMAYQYYVLRGDKGRTKF 143
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--------DSRNINKGNSAN 181
I ++ YHG+T+GA++V + F ++ LL K Y P + ++ ++ N
Sbjct: 144 ISVKEGYHGDTVGAMSVGGSELFHGVFKPLLFKGYHANPPYCYRCKYHNFKDTDERNEKG 203
Query: 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241
C + ++ L++K+ ++ +I+E + + GMI Y Y++ V + C ++ I
Sbjct: 204 CEMEC-LNEMISLIEKHAEEVFCVILEGGIMGSAGMIPYPDGYIEGVAKACKENDVIFIL 262
Query: 242 DEIAVGCGRTGKFFACEHAEI----WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK- 296
DE+A G GRTGK F C++ E+ PD LCL KG+TGGYLPL+ +TTD+IYN +
Sbjct: 263 DEVATGFGRTGKMFFCDNEELKKLEKPDILCLGKGLTGGYLPLAATLTTDEIYNQFLGEF 322
Query: 297 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 356
H H+Y+GN L C AALATLEIF K+N+++ I +K K L L + +
Sbjct: 323 GESKQLYHGHTYTGNQLLCSAALATLEIFEKENVIENIQPKIKLFHKELRKLKELEHVGD 382
Query: 357 FRQKGMIWAFDVIIEDPEQIETFS----KKFFVAA--LKNELLLRPIGNTVYLMPPYILN 410
R +G + + +++D E E + + VA L+ + +RPIGN + L+PP +
Sbjct: 383 VRGRGFMVGIE-LVKDKETKEPYPYGYKAGYRVAEKLLEKGIYMRPIGNVIILVPPLSIT 441
Query: 411 KNEIQHMTSAIFQTFNEV 428
+ EI ++ A+++ E
Sbjct: 442 EKEIIYLCDALYEAIKEA 459
|
Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor. Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q5LEY1|BIOAB_BACFN Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=bioB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 234/414 (56%), Gaps = 14/414 (3%)
Query: 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 70
+SN L + +K + ++ SG+ ++ +SSWW + G+++ +N+A+++QL+++ HVM
Sbjct: 336 TSNPLPVYKVKRADGATITLESGQTLIEGMSSWWCAVHGYNHPILNQAVQDQLSRMSHVM 395
Query: 71 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130
LTH P I+L + L L + FY G+ AVEVALKM+ YWY G K F+
Sbjct: 396 FGGLTHDPAIELGKLLLPLVPPSMQKIFYADSGSVAVEVALKMAVQYWYAAGKPEKNNFV 455
Query: 131 CLQNSYHGETLGALAVTN-IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
++N YHG+T A++V + + I+ S L + + P SR ++ N + I
Sbjct: 456 TIRNGYHGDTWNAMSVCDPVTGMHSIFGSALPIRHFLPAPSSRFGDEWNPED------IR 509
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
LE LL+K+ +++AA I+EP+VQ AGGM Y YLK +C+ Y + LI DEIA G G
Sbjct: 510 PLEYLLEKHADELAAFILEPIVQGAGGMRFYHPEYLKEAARLCHRYGVLLIFDEIATGFG 569
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTGK FA EHA + PD +C+ K +TGGY+ LS V+TT+++ + I + F+H ++
Sbjct: 570 RTGKLFAWEHAGVEPDIMCIGKALTGGYMTLSAVLTTNEVADCI-SNHAPGAFMHGPTFM 628
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVI 369
GNPLAC A A++ + + + + ++ + L P++ + R G I +
Sbjct: 629 GNPLACAVACASVRLLLTSGWQENVKRIEAQLNRELAPARELPQVADVRVLGAIGVIE-- 686
Query: 370 IEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423
+++P + ++F ++ + LRP G +Y+MPP+I+ ++ +T + +
Sbjct: 687 MKEPVNMAYLQRRF----VEEGIWLRPFGKLIYVMPPFIITPEQLTKLTEGMIR 736
|
Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 6 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 152980665 | 450 | adenosylmethionine-8-amino-7-oxononanoat | 0.976 | 0.933 | 0.548 | 1e-151 | |
| 134093390 | 448 | adenosylmethionine-8-amino-7-oxononanoat | 0.969 | 0.930 | 0.561 | 1e-149 | |
| 427400063 | 446 | adenosylmethionine-8-amino-7-oxononanoat | 0.946 | 0.912 | 0.573 | 1e-147 | |
| 445493864 | 448 | adenosylmethionine-8-amino-7-oxononanoat | 0.946 | 0.908 | 0.584 | 1e-146 | |
| 237749138 | 447 | adenosylmethionine-8-amino-7-oxononanoat | 0.955 | 0.919 | 0.580 | 1e-144 | |
| 385207184 | 453 | adenosylmethionine-8-amino-7-oxononanoat | 0.946 | 0.898 | 0.553 | 1e-142 | |
| 209518227 | 453 | adenosylmethionine-8-amino-7-oxononanoat | 0.946 | 0.898 | 0.543 | 1e-142 | |
| 340789433 | 465 | adenosylmethionine-8-amino-7-oxononanoat | 0.944 | 0.873 | 0.563 | 1e-142 | |
| 91781583 | 452 | adenosylmethionine-8-amino-7-oxononanoat | 0.946 | 0.900 | 0.548 | 1e-142 | |
| 237746985 | 444 | aminotransferase [Oxalobacter formigenes | 0.955 | 0.925 | 0.566 | 1e-142 |
| >gi|152980665|ref|YP_001351810.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Janthinobacterium sp. Marseille] gi|151280742|gb|ABR89152.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 243/443 (54%), Positives = 319/443 (72%), Gaps = 23/443 (5%)
Query: 9 KKSSNNLVIRSLKNSW----------------------KWSLIDVSGKRYLDAISSWWVN 46
K ++LV RSL++ W W L D G+RYLDAISSWWVN
Sbjct: 7 KIPGSDLVARSLRSVWHPCTQMQHHETLPLIPVSHGRGAW-LYDTDGQRYLDAISSWWVN 65
Query: 47 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106
+FGH+N IN AL++QL+ LEH ML+ TH+PV++LSE+L++ T ++LGHCFY SDGASA
Sbjct: 66 MFGHANPRINSALRSQLDMLEHAMLAGFTHEPVVQLSEQLAARTNHELGHCFYASDGASA 125
Query: 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166
VE+ALKMSFH W N G +K++F+CL+ SYHGET+GALAVT++ F++ Y ++L +++
Sbjct: 126 VEIALKMSFHSWRNNGLSDKREFVCLKGSYHGETIGALAVTDVPIFRDAYDAMLQHAHVV 185
Query: 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226
+PD+R G +A ++AR A LE LL++ IAA+I+EPLVQCA GM MYD +YL+
Sbjct: 186 MSPDARAARDGETAADVARRAASALETLLQERSKHIAALIVEPLVQCATGMAMYDPVYLQ 245
Query: 227 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTT 286
VR +C+ Y +HLIADEIAVGCGRTG FFACE A +WPDFLCLSKGI+GGYLPLSLVMT
Sbjct: 246 EVRALCDKYQVHLIADEIAVGCGRTGTFFACEQAAVWPDFLCLSKGISGGYLPLSLVMTR 305
Query: 287 DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 346
D+IY S Y+ + FLHSHSY+GNPLAC AALATL IF +D+++ ++T+AL
Sbjct: 306 DEIYQSFYHGDVTRGFLHSHSYTGNPLACRAALATLAIFEEDDVINANRLRAARLTEALA 365
Query: 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPP 406
L HP++ NFRQ+GMIWAFD +I++ E TFS++FF AL++ELLLRPIG TVYLMPP
Sbjct: 366 PLAAHPQVSNFRQRGMIWAFDAVIDNAEAASTFSRRFFTTALEHELLLRPIGPTVYLMPP 425
Query: 407 YILNKNEIQHMTSAIFQTFNEVI 429
YILN EI + + F +V+
Sbjct: 426 YILNNEEIDGLAARTQTVFEKVM 448
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093390|ref|YP_001098465.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Herminiimonas arsenicoxydans] gi|133737293|emb|CAL60336.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 247/440 (56%), Positives = 317/440 (72%), Gaps = 23/440 (5%)
Query: 13 NNLVIRSLKNSW----------------------KWSLIDVSGKRYLDAISSWWVNLFGH 50
++LV RSL++ W W L D++G RYLDAISSWWVNLFGH
Sbjct: 9 DDLVTRSLRSVWHPCTQMQHHETLPLIPVSHGRGAW-LYDINGDRYLDAISSWWVNLFGH 67
Query: 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110
+N IN ALK QL+ LEH ML+ TH+PV++LSE+L++ T + LGHCFY SDGASAVE+A
Sbjct: 68 ANPRINSALKLQLDLLEHAMLAGFTHEPVVQLSEQLAARTGHVLGHCFYASDGASAVEIA 127
Query: 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170
LKMSFH W N G K++F+CL+ SYHGET+GAL VT++ F++ Y SLL +++ +PD
Sbjct: 128 LKMSFHTWRNHGKPAKREFVCLKGSYHGETIGALGVTDVPIFRDAYDSLLQHAHVVASPD 187
Query: 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230
+RN G SA ++AR A +LE LL++ ++IAAIIIEPLVQCA GM M+D +YL+ VR
Sbjct: 188 ARNAEPGESAADVARQAAGELEKLLQERASQIAAIIIEPLVQCASGMAMHDPVYLQEVRL 247
Query: 231 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIY 290
+C+ Y IH+IADEIAVGCGRTG FFACE A IWPDF+CLSKGI+GGYLPLSLVMT D+IY
Sbjct: 248 LCDKYQIHMIADEIAVGCGRTGTFFACEQAAIWPDFICLSKGISGGYLPLSLVMTRDEIY 307
Query: 291 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT 350
S Y + FLHSHSY+GNPLAC AALATL IF +D++L ++T AL L +
Sbjct: 308 QSFYDIDVRRGFLHSHSYTGNPLACRAALATLAIFEEDDVLNANRARAAQLTMALAPLAS 367
Query: 351 HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILN 410
H ++ NFR +GMIWAFD +I+ P+ TFS++FF AL++ELLLRPIGNTVYLMPPYIL+
Sbjct: 368 HEQVANFRHRGMIWAFDAVIDSPQAAATFSQRFFSTALEHELLLRPIGNTVYLMPPYILS 427
Query: 411 KNEIQHMTSAIFQTFNEVIT 430
EI + + + F V+
Sbjct: 428 DEEIAGLAARVQTVFARVMA 447
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427400063|ref|ZP_18891301.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Massilia timonae CCUG 45783] gi|425720803|gb|EKU83718.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 235/410 (57%), Positives = 310/410 (75%), Gaps = 3/410 (0%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
K W L D GKRYLD ISSWWVNLFGH+N IN ALK+QL+KLEH ML+ TH PV+
Sbjct: 39 KGPW---LYDYDGKRYLDGISSWWVNLFGHANPRINAALKDQLDKLEHAMLAGFTHAPVV 95
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+L+E+LS LT + LGH + SDGASAVE+A+KMSFH W N G K++F+CLQ SYHGET
Sbjct: 96 ELAERLSKLTGHALGHATFASDGASAVEIAMKMSFHAWRNAGKPAKQEFVCLQGSYHGET 155
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GAL+VT++ FK+ Y LL +++++ PD+RN +G +A ++AR AI +++ L ++ +
Sbjct: 156 IGALSVTDVPLFKDAYGPLLRASHVVSAPDARNAGEGETAQDVARRAILEVKELFEQRGD 215
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
IAAII+EPLVQCA GM MYD +YLKL+R++C+ +++HLIADEIAVGCGRTG FFACE A
Sbjct: 216 NIAAIIVEPLVQCATGMAMYDPLYLKLLRDLCDQHHVHLIADEIAVGCGRTGTFFACEQA 275
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
IWPDF+CLSKGI+GGYLPLSLV+T D IY + Y ++ FLHSHSY+GNPLAC AALA
Sbjct: 276 SIWPDFMCLSKGISGGYLPLSLVLTRDDIYQAFYSEDITRGFLHSHSYTGNPLACRAALA 335
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380
TL+IF +D++L R + K+T AL L H + +FRQ+GMI+AFD I D ++ TFS
Sbjct: 336 TLDIFEEDDVLNRNRELATKMTIALAPLAEHERARHFRQRGMIFAFDAIEPDKDRASTFS 395
Query: 381 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
++FF A++NELLLRPIG TVYLMPPY+L+ ++ + + +TF VI
Sbjct: 396 RRFFSTAVENELLLRPIGRTVYLMPPYVLDDEDVAGLAARTIKTFESVIA 445
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445493864|ref|ZP_21460908.1| adenosylmethionine-8-amino-7-oxononanoate transaminase BioA [Janthinobacterium sp. HH01] gi|444790025|gb|ELX11572.1| adenosylmethionine-8-amino-7-oxononanoate transaminase BioA [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/416 (58%), Positives = 311/416 (74%), Gaps = 9/416 (2%)
Query: 17 IRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH 76
++S K +W L D G+RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH
Sbjct: 39 VKSGKGAW---LYDHEGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGFTH 95
Query: 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY 136
+PVI+LSEKLS+LT + LGH FY SDGASAVE+ALKMSFH W N G K++F+CL+ SY
Sbjct: 96 EPVIELSEKLSALTCHVLGHSFYASDGASAVEIALKMSFHSWRNNGKSGKQEFVCLKGSY 155
Query: 137 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN--KGNSANEIARCAIFDLEIL 194
HGET+GALAVT++ FK+ Y LL + + +PD+RN N +G +A ++AR A D+E L
Sbjct: 156 HGETIGALAVTDVALFKDAYGPLLRASQTVMSPDARNANAAEGETAEDMARKAAADVERL 215
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+ +KIAAIIIEPLVQCA GM M+D +YLKLVRE+C+ +++HLI DEIAVGCGRTG F
Sbjct: 216 FIERADKIAAIIIEPLVQCATGMAMHDPLYLKLVRELCDRHSVHLILDEIAVGCGRTGTF 275
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FACE A +WPDFLCLSKGI+GGYLPLSLVMT ++IY + Y + FLHSHSY+GNPLA
Sbjct: 276 FACEQAGVWPDFLCLSKGISGGYLPLSLVMTRNEIYEAFYSSDVTRGFLHSHSYTGNPLA 335
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AALATL+IF +D++L ++T AL L H ++ NFRQ+GMIWAFD I P+
Sbjct: 336 CRAALATLQIFEEDDVLATNRVKAARLTAALQPLAQHKQVRNFRQRGMIWAFDAIAATPD 395
Query: 375 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
FS++FF A+++ELL+RPIG TVY+MPPYILN EI + + F++V+
Sbjct: 396 ----FSRRFFATAVEHELLMRPIGATVYMMPPYILNDEEIDGLAANTLAVFDKVMA 447
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237749138|ref|ZP_04579618.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Oxalobacter formigenes OXCC13] gi|229380500|gb|EEO30591.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Oxalobacter formigenes OXCC13] | Back alignment and taxonomy information |
|---|
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 309/415 (74%), Gaps = 4/415 (0%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ ++S K +W L D G RYLDAISSWW N+FGH+N +I+KALK+QL+ LEH ML+
Sbjct: 35 VALKSGKGAW---LFDQDGNRYLDAISSWWTNIFGHANPFISKALKDQLDTLEHAMLAGC 91
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH+PV++LSE+LS LT LGHCFYGSDGASAVE+ALKMSFHYW N G K++FICL+N
Sbjct: 92 THEPVVELSERLSVLTGNTLGHCFYGSDGASAVEIALKMSFHYWKNSGHPEKQEFICLKN 151
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
SYHGET+GAL+VT++ F++ Y L+ + I+ +PDSR+ G +A ++A A LE L
Sbjct: 152 SYHGETIGALSVTDVTLFRDSYAPLIRNSNIVESPDSRHAKDGQTATDVANAAADKLEAL 211
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
L++ KIAAII+EPL+QCA G +MYD +YLK VRE+C+ Y IH IADEIAVG GRTG F
Sbjct: 212 LQEKSAKIAAIIVEPLIQCAAGFVMYDPLYLKRVRELCDRYKIHFIADEIAVGFGRTGTF 271
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FACE A IWPD LCLSK ITGG+LPLSLVMTTD ++N+ Y + FLHSHSY+GNPLA
Sbjct: 272 FACEQAGIWPDMLCLSKAITGGFLPLSLVMTTDDVFNAFYDMDITRGFLHSHSYTGNPLA 331
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AALATL++F N++ R +++++AL L HP+ +FR KGMIWAFDV +E +
Sbjct: 332 CRAALATLDLFKNHNVIARNQTVSRQLSEALKPLEIHPRNKHFRNKGMIWAFDVDLETEK 391
Query: 375 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
Q TF ++FF AL++ELL+RPIGNTVYLMPPYILN EI + F E++
Sbjct: 392 QA-TFPRRFFEKALQHELLMRPIGNTVYLMPPYILNGEEIGLLAHKTISVFEEMM 445
|
Source: Oxalobacter formigenes OXCC13 Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|385207184|ref|ZP_10034052.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Burkholderia sp. Ch1-1] gi|385179522|gb|EIF28798.1| adenosylmethionine-8-amino-7-oxononanoate transaminase [Burkholderia sp. Ch1-1] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 227/410 (55%), Positives = 301/410 (73%), Gaps = 3/410 (0%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+ +W L D +G RYLDAISSWWVNLFGH+NS IN ALK+QL+ LEH ML+ TH+P I
Sbjct: 44 QGAW---LYDRAGHRYLDAISSWWVNLFGHANSRINAALKDQLDTLEHAMLAGCTHEPAI 100
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+L+E+LS+LT LGH F+ SDGASAVE+ALKMSFH W N+GF +K++F+C+ NSYHGET
Sbjct: 101 ELAERLSALTGNTLGHAFFASDGASAVEIALKMSFHSWRNRGFADKQEFVCIANSYHGET 160
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GAL VT++ FK+ Y L+ ++ +PD+R G +A ++AR A+ + L +
Sbjct: 161 IGALGVTDVALFKDAYDPLIRHAHVAASPDARLAEAGETAADVARRALDHVRSLFEARAT 220
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
KIAA+I+EPLVQCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A
Sbjct: 221 KIAALIVEPLVQCAAGMAMHDASYIAGLRALCDQYGVHLIADEIAVGCGRTGTFFACEQA 280
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
IWPDF+CLSKGI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALA
Sbjct: 281 GIWPDFICLSKGISGGYLPLSIVLSRDEIFEAFYHDDTARGFLHSHSYTGNPLACRAALA 340
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380
TL++F DN+L +Q K+ AL L H ++ N RQ G I+AFD +I+D +Q TFS
Sbjct: 341 TLDLFATDNVLAANAQKSAKLKAALAPLAGHEQVRNLRQCGTIFAFDAVIDDAQQARTFS 400
Query: 381 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
++FF AL+ ELLLRPIG TVYLMPPYIL+ E+ + S +TF +
Sbjct: 401 RRFFENALQRELLLRPIGTTVYLMPPYILDDEELALLASRTRETFEATLA 450
|
Source: Burkholderia sp. Ch1-1 Species: Burkholderia sp. Ch1-1 Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209518227|ref|ZP_03267054.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia sp. H160] gi|209501342|gb|EEA01371.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia sp. H160] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 223/410 (54%), Positives = 303/410 (73%), Gaps = 3/410 (0%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+ +W L D +G RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P +
Sbjct: 44 QGAW---LYDRAGHRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAV 100
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+L+E+LS+LT LGH F+ SDGASAVE+ALKMSFH W N+G+ +K++F+C+ NSYHGET
Sbjct: 101 ELAERLSALTGNTLGHAFFASDGASAVEIALKMSFHSWRNRGYADKQEFVCIANSYHGET 160
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GAL VT++ FK+ Y L+ +++ +PD+R G SA ++AR A+ ++ L N
Sbjct: 161 IGALGVTDVALFKDAYDPLIRHAHVVASPDARLAQAGESAADVARRALDNVRALFDARAN 220
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
+IAA+IIEPLVQCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A
Sbjct: 221 RIAALIIEPLVQCAAGMAMHDASYVAGLRALCDQYGVHLIADEIAVGCGRTGTFFACEQA 280
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
+WPDFLCLSKGI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALA
Sbjct: 281 GVWPDFLCLSKGISGGYLPLSIVLSRDEIFAAFYHDDTARGFLHSHSYTGNPLACRAALA 340
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380
TL++F D++L ++ + AL L H ++ N RQ+G I+AFD +I+DP Q +TFS
Sbjct: 341 TLDLFASDDVLTANARKSATLKAALAPLAGHAQVRNLRQRGTIFAFDAMIDDPLQAKTFS 400
Query: 381 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
++FF AL+ ELLLRPIG TVYLMPPYIL+ E+ + + TF+ +
Sbjct: 401 RRFFENALQRELLLRPIGTTVYLMPPYILDDEELALLAARTRATFDATLA 450
|
Source: Burkholderia sp. H160 Species: Burkholderia sp. H160 Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789433|ref|YP_004754898.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Collimonas fungivorans Ter331] gi|340554700|gb|AEK64075.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/415 (56%), Positives = 306/415 (73%), Gaps = 9/415 (2%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+ +W L D GKRYLD ISSWWVNLFGH+N IN ALK+QL++LEH ML+ TH+PV+
Sbjct: 51 RGAW---LYDTDGKRYLDGISSWWVNLFGHANPRINAALKDQLDQLEHAMLAGFTHEPVV 107
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+LSE+L++ T LGHCFY SDGASAVE+ALKMSFH W N G+ +K++F+CL+ SYHGET
Sbjct: 108 QLSEQLAARTGNVLGHCFYASDGASAVEIALKMSFHAWRNAGYTDKQEFVCLKGSYHGET 167
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GALAVT++ F++ Y LL + +++ +PD+R G SA ++A A LE LL++ +
Sbjct: 168 IGALAVTDVPLFRDAYGPLLRQAHVVASPDARGARDGESAADVALRAAATLEKLLQQRSS 227
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
IAAIIIEPLVQCA GM M+D +YL+ +R +C+ Y +HLI DEIAVGCGRTG FFA E A
Sbjct: 228 HIAAIIIEPLVQCATGMAMHDPVYLRELRALCDRYKVHLIFDEIAVGCGRTGTFFASEQA 287
Query: 261 ------EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
+WPDFLCLSKGI+GGYLPLSLVMT D+IY + Y + FLHSHSY+GNPLA
Sbjct: 288 AAPGQEPVWPDFLCLSKGISGGYLPLSLVMTRDEIYRAFYDNDLARGFLHSHSYTGNPLA 347
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AALATL IF +D+++ + ++IT AL L HP++ +FRQ+GMIWAFD +I++
Sbjct: 348 CRAALATLAIFEEDDVINVNRERAQRITAALEPLAQHPQVRHFRQRGMIWAFDAVIDNKA 407
Query: 375 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
TFS++FF +A+++ELLLRPIG TVYLMPPYIL+ EI + + F VI
Sbjct: 408 LAATFSRRFFASAVEHELLLRPIGKTVYLMPPYILDDQEIDLLATRTAAVFESVI 462
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|91781583|ref|YP_556789.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Burkholderia xenovorans LB400] gi|91685537|gb|ABE28737.1| aminotransferase [Burkholderia xenovorans LB400] | Back alignment and taxonomy information |
|---|
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 225/410 (54%), Positives = 302/410 (73%), Gaps = 3/410 (0%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+ +W L D +G RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P I
Sbjct: 43 QGAW---LYDRAGHRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAI 99
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+L+E+LS+LT LGH F+ SDGASAVE+ALKMSFH W N+GF +K++F+C+ NSYHGET
Sbjct: 100 ELAERLSALTGNTLGHAFFASDGASAVEIALKMSFHSWRNRGFADKQEFVCIANSYHGET 159
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GAL VT++ FK+ Y L+ +++ +PD+R G +A ++AR A+ + L +
Sbjct: 160 IGALGVTDVALFKDAYDPLIRHAHVVASPDARLAQAGETAADVARRALDHVRSLFEARAT 219
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
KIAA+I+EPLVQCA GM M+D+ Y+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A
Sbjct: 220 KIAALIVEPLVQCAAGMAMHDASYIAGLRTLCDQYGVHLIADEIAVGCGRTGTFFACEQA 279
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
IWPDF+CLSKGI+GGYLPLS+V++ D+I+ + Y+ + FLHSHSY+GNPLAC AALA
Sbjct: 280 GIWPDFICLSKGISGGYLPLSIVLSRDEIFEAFYHDDTARGFLHSHSYTGNPLACRAALA 339
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380
TL++F DN++ +Q K+ AL L H ++ N RQ G I+AFD +I+D +Q TFS
Sbjct: 340 TLDLFAADNVIAVNAQKSAKLKAALAPLAEHEQVRNLRQCGTIFAFDALIDDAQQARTFS 399
Query: 381 KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
++FF AL+ ELLLRPIG TVYLMPPYIL+ E+ + S +TF+ +
Sbjct: 400 RRFFENALRRELLLRPIGTTVYLMPPYILDDEELALLASRTRETFDATLA 449
|
Source: Burkholderia xenovorans LB400 Species: Burkholderia xenovorans Genus: Burkholderia Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|237746985|ref|ZP_04577465.1| aminotransferase [Oxalobacter formigenes HOxBLS] gi|229378336|gb|EEO28427.1| aminotransferase [Oxalobacter formigenes HOxBLS] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 235/415 (56%), Positives = 306/415 (73%), Gaps = 4/415 (0%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ ++ K W L D RY DAISSWW NLFGH+N +I+KA+K+QL+KLEH ML+
Sbjct: 32 VALKQGKGVW---LYDQDRNRYFDAISSWWTNLFGHANPFISKAVKDQLDKLEHGMLAGC 88
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH+PV++LSE+LS+LT LGHCFY SDGASA+E+ALKMSFHYW N G K++F+CL+N
Sbjct: 89 THEPVVELSERLSALTGNALGHCFYASDGASAIEIALKMSFHYWKNSGQPQKQEFVCLEN 148
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
SYHGET+GAL+VT++ F++ Y L+ ++I+ +PD+R G + +IAR A LE L
Sbjct: 149 SYHGETIGALSVTDVTLFRDSYAPLIRNSHIVASPDNRQAKDGQTGTDIAREAADKLETL 208
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
L++ IAA+I+EPLVQCA G +MY YLK +RE+C +Y++HLIADEIAVG GRTG F
Sbjct: 209 LQEKAGTIAAVIVEPLVQCAAGFVMYSPEYLKRIRELCKHYHVHLIADEIAVGFGRTGTF 268
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FACE A IWPDFLCLSKGITGGYLPLS VMTTD ++N+ Y ++ FLHSHSY+GNPLA
Sbjct: 269 FACEQAGIWPDFLCLSKGITGGYLPLSAVMTTDTVFNAFYDRDITRGFLHSHSYTGNPLA 328
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AALA+L++F N++ + KK+ KAL L THPK+ +FR GMIWAFD ++ +
Sbjct: 329 CRAALASLDLFRLHNVISQNRGISKKLDKALDPLKTHPKVRHFRNCGMIWAFDAVMPAEK 388
Query: 375 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
++ F ++FF ALK+ELL+RPIGNTVYLMPPYILN +I + F EVI
Sbjct: 389 EV-AFPRRFFETALKHELLVRPIGNTVYLMPPYILNDTDIALLADKTKAVFEEVI 442
|
Source: Oxalobacter formigenes HOxBLS Species: Oxalobacter formigenes Genus: Oxalobacter Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TIGR_CMR|CJE_0352 | 427 | CJE_0352 "adenosylmethionine-- | 0.930 | 0.936 | 0.437 | 1.7e-84 | |
| TIGR_CMR|BA_4341 | 462 | BA_4341 "adenosylmethionine--8 | 0.930 | 0.865 | 0.362 | 3.1e-74 | |
| TIGR_CMR|CBU_1008 | 442 | CBU_1008 "adenosylmethionine-8 | 0.867 | 0.843 | 0.409 | 3.5e-68 | |
| TIGR_CMR|GSU_1582 | 453 | GSU_1582 "adenosylmethionine-- | 0.962 | 0.913 | 0.348 | 2.8e-66 | |
| TIGR_CMR|NSE_0618 | 447 | NSE_0618 "adenosylmethionine-8 | 0.967 | 0.930 | 0.356 | 5.2e-65 | |
| UNIPROTKB|P12995 | 429 | bioA "adenosylmethionine-8-ami | 0.881 | 0.883 | 0.353 | 7.9e-62 | |
| UNIPROTKB|Q9KSZ5 | 428 | bioA "Adenosylmethionine-8-ami | 0.886 | 0.890 | 0.335 | 7.1e-61 | |
| TIGR_CMR|VC_1111 | 428 | VC_1111 "adenosylmethionine-8- | 0.886 | 0.890 | 0.335 | 7.1e-61 | |
| CGD|CAL0002562 | 433 | orf19.2591 [Candida albicans ( | 0.874 | 0.868 | 0.360 | 7.3e-59 | |
| UNIPROTKB|Q5A975 | 433 | BIO31 "Putative uncharacterize | 0.874 | 0.868 | 0.360 | 7.3e-59 |
| TIGR_CMR|CJE_0352 CJE_0352 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 185/423 (43%), Positives = 258/423 (60%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
K NL + +K + L D K Y+D +SSWWVNLFGH N I A+K Q+++LEHV
Sbjct: 22 KDHENLPLIPIKRAKGVWLYDFDDKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHV 81
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
+L+ TH+P+IKLS +L CFY +G+SA+EVALKMSFHY NKG + K KF
Sbjct: 82 ILAGFTHEPIIKLSARLCEKVGRNFNKCFYADNGSSAIEVALKMSFHYHLNKG-VKKSKF 140
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
+ L NSYHGETLGAL+V ++ +K+ Y LL + ++TP + +G +
Sbjct: 141 LSLSNSYHGETLGALSVGDVALYKDTYKPLLLEC--LSTP----VPQGKDYTQ------- 187
Query: 190 DLEIL---LKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+LEIL L+KN ++ EPLVQCAG M MY++ ++ ++C+ + + +I DEIAV
Sbjct: 188 ELEILKDILEKNASEICAFILEPLVQCAGNMHMYEAGFIDEAIKLCHKFGVQVIFDEIAV 247
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHS 305
G GRTG FA + PDF+CLSKGITGG++PLS+V+T D FLHS
Sbjct: 248 GFGRTGTLFALHQCKQSPDFICLSKGITGGFMPLSVVLTRDEIYNAFYDTYESQKAFLHS 307
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIW 364
HSY+GN LAC AA A L+IF +NIL + +Q + + I K + L + NFR GMI
Sbjct: 308 HSYTGNTLACAAANAVLDIFEDENILVK-NQILSEFIKKEFSRLEKFDFLGNFRTCGMIS 366
Query: 365 AFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 424
AFD++ +++ F F AL+ LLLRP+ NT+Y MPPYI+ K +I ++ ++ Q
Sbjct: 367 AFDILSTKYKRVGLF---VFQKALEKGLLLRPLANTIYFMPPYIITKEQIVYVLESLEQI 423
Query: 425 FNE 427
F E
Sbjct: 424 FKE 426
|
|
| TIGR_CMR|BA_4341 BA_4341 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 148/408 (36%), Positives = 235/408 (57%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV+G Y D +SS W+N+ GH +++A++ QLNK+ H + L + P I L+EK+
Sbjct: 52 LYDVNGNEYWDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTMLGLANVPSILLAEKII 111
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+ L FY G+SAVE+A+KM+F YW +KG K++F+ L+ +YHG+T+GA++V
Sbjct: 112 EVVPEGLKKVFYSDSGSSAVEIAIKMAFQYWQHKGKPKKQRFVTLKEAYHGDTIGAVSVG 171
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXX 207
I F ++Y+SLL + + P + GN EI + + ++E LLK H +
Sbjct: 172 AIDLFYQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEEMEELLKDKHEEIAAIIV 231
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
EPL+Q AGGMI YL+ +R +C YN+ I DE+A G GRTGK FACEH + PD L
Sbjct: 232 EPLMQGAGGMITMPKGYLRGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIL 291
Query: 268 CLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHSHSYSGNPLACCAALATLEIFN 326
KG+TGGYLP+++ +TTD F H HSY+GNPL C A+A LE++
Sbjct: 292 TAGKGLTGGYLPVAITVTTDEIYNAFLGSYEEQKTFFHGHSYTGNPLGCAVAIANLELYE 351
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF--SKKFF 384
K N+++ +++ + + L L + + RQ G++ + ++++ E E F +++
Sbjct: 352 KTNLIEEVARKTEYVATQLEELFACKHVGDIRQCGLMVGIE-LVKNKETKEAFEWTERVG 410
Query: 385 VAALKNE----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
V K ++LRP+GNT+ MPP +EI M +++ +++
Sbjct: 411 VQVCKRSRELGMILRPLGNTIVFMPPLASTIDEIDEMLRILYKAISDI 458
|
|
| TIGR_CMR|CBU_1008 CBU_1008 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 158/386 (40%), Positives = 232/386 (60%)
Query: 27 SLIDVS-GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85
S I++S G++ +DAISSWW GH++ + +ALK QL K EHV+ +N T++ ++ LS++
Sbjct: 38 SYIELSNGQKIIDAISSWWCKSLGHNHPKLKEALKQQLEKFEHVIFANTTNEIIVALSQQ 97
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L++L L FY DG+ AVE+A+KMS H +G +KKFI L+NSYHGET+GAL+
Sbjct: 98 LAALLP-GLNKVFYAGDGSCAVEIAMKMSLHSRIIQGNKKRKKFIALKNSYHGETVGALS 156
Query: 146 VTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARC-AIFD-LEILLKKNHNKX 202
V+++ ++ Y+++L + Y I + P N A E C A +D +E L + +
Sbjct: 157 VSDVGLYRAPYSTMLFEPYFIESIPYVLN----TQAPEWNDCSAHWDTVERLFEPHAETA 212
Query: 203 XXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262
EP+VQ A GM +Y +L + + N +IH IADEI G GRTGK ACEHA I
Sbjct: 213 TAILVEPIVQGASGMKIYSQDFLARLFQWAKNNHIHFIADEIMTGIGRTGKMLACEHAGI 272
Query: 263 WPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHSHSYSGNPLACCAALAT 321
PDF+CLSKG+T GYLP S V+T+D FLHSH+YSGN LA ALAT
Sbjct: 273 IPDFVCLSKGLTSGYLPFSAVLTSDEIYQLFYDDYQTGKAFLHSHTYSGNALAAAVALAT 332
Query: 322 LEIFNKDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAFDVIIEDPEQIETFS 380
L++F+++ I R + K + + +T + ++ N R G + A D +I P ++
Sbjct: 333 LKVFSEEKICARAHKLGKFMLEKMTQVAQETGQLENVRGIGALVAAD-LIPQPGRLR-LG 390
Query: 381 KKFFVAALKNELLLRPIGNTVYLMPP 406
+ + A+K +LLRPIGNT+Y +PP
Sbjct: 391 YEVYQEAVKQGVLLRPIGNTLYWLPP 416
|
|
| TIGR_CMR|GSU_1582 GSU_1582 "adenosylmethionine--8-amino-7-oxononanoate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 149/428 (34%), Positives = 236/428 (55%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
+ S +VI + SW +ID GKRYLD +++ W N+ GH IN+ALK Q+++LEH
Sbjct: 28 EESEPVVIVEGEGSW---IIDSEGKRYLDGVAAIWTNVHGHCRREINEALKAQVDRLEHS 84
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
L LT+ + L+++L+ + L FY +G++AVEV +KM+F +W ++G K +F
Sbjct: 85 TLLGLTNDRAVVLAKRLAEIAPPGLCKVFYSDNGSTAVEVGVKMAFQFWRHEGKPEKSRF 144
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA-- 187
I ++YHG+TLGA++V I F ++ LL T P G A C
Sbjct: 145 ISFTSAYHGDTLGAVSVGGIDLFHGVFRPLLFPTIQAPAPYCYRCPMGRDTP--AACGME 202
Query: 188 -IFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ +LE +++ + + EPLVQ AGGMI+ +LK VRE+C+ ++I +IADE+AV
Sbjct: 203 CLTELERIMESHAGEVAGLVIEPLVQGAGGMIVQPEGFLKGVRELCDRHDILMIADEVAV 262
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX-XFLHS 305
G GRTG FAC I PD + LSKGIT GY+PL+ + T F H
Sbjct: 263 GFGRTGAMFACGREGITPDIMALSKGITAGYMPLAATLATQQVYDAFLGEYREMKTFFHG 322
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
H+++GNPL C ALA+L++F D +L ++ +K + + L LI + + RQ GMI A
Sbjct: 323 HTFTGNPLGCAVALASLDLFESDRLLGKLPNKIKLLQEKLKGLIELEHVGDVRQCGMIAA 382
Query: 366 FDVI----IEDP-EQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+++ ++P + E + + A + + LRP+GN + + PP + EI +
Sbjct: 383 VELVRDRATKEPFDWEERVGVRVCLEARTHGVFLRPLGNVIVIFPPLAITAEEIDFLVDG 442
Query: 421 IFQTFNEV 428
+ ++ + V
Sbjct: 443 LEKSIHTV 450
|
|
| TIGR_CMR|NSE_0618 NSE_0618 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 151/423 (35%), Positives = 230/423 (54%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
+K SS ++ I ++ ++ L D K+YLD ISSWWVNL GH+N I A+ Q KLE
Sbjct: 25 EKTSSPSIAI--IRGEGEY-LYDEQNKKYLDLISSWWVNLHGHANPAIAHAIYEQALKLE 81
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
V+ + TH I+L E L L F+ +G+++VEVALK++ +W N G +
Sbjct: 82 QVIFAGFTHDQAIQLCENLKVELPENLTRFFFSDNGSTSVEVALKIALQFWKNSGEKQRD 141
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187
FI YHG+T+GA+++ F + Y +L +T + P + + E A +
Sbjct: 142 IFISFDKGYHGDTVGAMSLGASSGFFDQYKKILFETVHVPFPATWENDPDVEIKEEA--S 199
Query: 188 IFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+ ++ L++N N+ EPLVQ AGGM M YL+ ++ Y I I DEI G
Sbjct: 200 LNTIQNFLEQNLNRVAGFIAEPLVQGAGGMRMCRYKYLEQCVKLFKEYGILTIFDEIMTG 259
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHS 307
RTGK FA ++ PD LCLSKG+TGG+LPLSL +TT+ +HSHS
Sbjct: 260 FYRTGKMFASDYILSKPDILCLSKGLTGGFLPLSLTITTERVYNAFLSDNFSSALIHSHS 319
Query: 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWA 365
Y+GNPL C AA+A+LE+ + L +I++ + + L +T P+II R G I A
Sbjct: 320 YTGNPLGCAAAIASLELLKSTSTLDKIAKIEQLHRSFICDLKLTLPEIIKAERVCGTIVA 379
Query: 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425
F++ E+ T + K +K LL+RP+GNT+YLMPPY +++ ++ + +
Sbjct: 380 FNLFSEECNYNHTIAVKLREIFMKEGLLIRPLGNTIYLMPPYCISEKALKEAHCKVMELI 439
Query: 426 NEV 428
+ +
Sbjct: 440 SSI 442
|
|
| UNIPROTKB|P12995 bioA "adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 140/396 (35%), Positives = 216/396 (54%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLV 96
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVC 155
Query: 148 NIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 206
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 156 DPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR------LMAAHRHEIAAVI 209
Query: 207 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269
Query: 267 LCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFN 326
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 270 LCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE 328
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFFV 385
+ Q+++ ++ + L + + R G I ++E + + +KFFV
Sbjct: 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFFV 384
Query: 386 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+ + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 385 ---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
|
|
| UNIPROTKB|Q9KSZ5 bioA "Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 133/396 (33%), Positives = 211/396 (53%)
Query: 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92
G+ +D +SSWW + G+++ +N+A Q+ ++ H+M LTH+P I+L +KL L
Sbjct: 41 GRSLVDGMSSWWAAIHGYNHPKLNQAAHQQIEQMSHIMFGGLTHQPAIELCQKLLKLAPN 100
Query: 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-S 151
L F G+ AVEV+LKM+ YW++KG + KF+ L++ YHG+T A++VT+ S
Sbjct: 101 NLQQVFLADSGSVAVEVSLKMALQYWHSKG-QPRAKFLTLRHGYHGDTFAAMSVTDPDNS 159
Query: 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 211
+Y L + +P+ + + +IA D L ++H++ EP+V
Sbjct: 160 MHSLYKGFLPEHIFANSPEGGFFDAWDE-RDIA-----DFRHKLTEHHHQIAAVILEPIV 213
Query: 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271
Q AGGM +Y +L+ VR +C+ + + LI DEIA G GRTGK FACEHA I PD LC+ K
Sbjct: 214 QGAGGMRIYHPEFLRQVRALCDEFGVLLILDEIATGFGRTGKLFACEHAGIQPDILCVGK 273
Query: 272 GITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNIL 331
+TGGY+ LS +TT F+H ++ GNPLAC A A+L + + +
Sbjct: 274 ALTGGYMTLSATLTTQQVADTVCAGEAGC-FMHGPTFMGNPLACAVASASLSLIEQGDWQ 332
Query: 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391
Q+++ + L L P++ R G I + + P +E F +++
Sbjct: 333 QQVANIEAFFAEQLPKLNDSPRVKQTRWLGAIGVVETHL--PVNMEVIQALF----VEHG 386
Query: 392 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ +RP G +YLMPPYI +Q + A+ N+
Sbjct: 387 VWIRPFGRLIYLMPPYISQPEHLQKLVDAMAAALNQ 422
|
|
| TIGR_CMR|VC_1111 VC_1111 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 133/396 (33%), Positives = 211/396 (53%)
Query: 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92
G+ +D +SSWW + G+++ +N+A Q+ ++ H+M LTH+P I+L +KL L
Sbjct: 41 GRSLVDGMSSWWAAIHGYNHPKLNQAAHQQIEQMSHIMFGGLTHQPAIELCQKLLKLAPN 100
Query: 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-S 151
L F G+ AVEV+LKM+ YW++KG + KF+ L++ YHG+T A++VT+ S
Sbjct: 101 NLQQVFLADSGSVAVEVSLKMALQYWHSKG-QPRAKFLTLRHGYHGDTFAAMSVTDPDNS 159
Query: 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLV 211
+Y L + +P+ + + +IA D L ++H++ EP+V
Sbjct: 160 MHSLYKGFLPEHIFANSPEGGFFDAWDE-RDIA-----DFRHKLTEHHHQIAAVILEPIV 213
Query: 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271
Q AGGM +Y +L+ VR +C+ + + LI DEIA G GRTGK FACEHA I PD LC+ K
Sbjct: 214 QGAGGMRIYHPEFLRQVRALCDEFGVLLILDEIATGFGRTGKLFACEHAGIQPDILCVGK 273
Query: 272 GITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNIL 331
+TGGY+ LS +TT F+H ++ GNPLAC A A+L + + +
Sbjct: 274 ALTGGYMTLSATLTTQQVADTVCAGEAGC-FMHGPTFMGNPLACAVASASLSLIEQGDWQ 332
Query: 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391
Q+++ + L L P++ R G I + + P +E F +++
Sbjct: 333 QQVANIEAFFAEQLPKLNDSPRVKQTRWLGAIGVVETHL--PVNMEVIQALF----VEHG 386
Query: 392 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ +RP G +YLMPPYI +Q + A+ N+
Sbjct: 387 VWIRPFGRLIYLMPPYISQPEHLQKLVDAMAAALNQ 422
|
|
| CGD|CAL0002562 orf19.2591 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 142/394 (36%), Positives = 208/394 (52%)
Query: 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91
+G+ +D +SSWW + G+++ +N AL Q+N + HVM +TH P I+L L LT
Sbjct: 44 TGQSLIDGMSSWWCAIHGYNHKDLNDALIKQVNIMSHVMFGGITHDPAIQLCRLLVELTN 103
Query: 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ- 150
KL F G+ +VEVALK + YW +K KKKF+ ++ YHG+T GA+ V++ Q
Sbjct: 104 PKLECVFLCDSGSVSVEVALKQAIQYWDSKEQPEKKKFLSIKRGYHGDTFGAMFVSDPQN 163
Query: 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPL 210
S IYTS P + G+ +E I D + +KK+H EP+
Sbjct: 164 SMHSIYTSYGPDNIFAEAPQ---VGFGDEWDETD---IEDFKQKIKKHHKIIAAVILEPV 217
Query: 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270
+Q AGGM Y YLK VRE+C+ YN+ L+ DEIA G GRTGK FA EHA I PD +C+
Sbjct: 218 LQGAGGMRTYHPQYLKRVRELCDKYNVLLVLDEIATGFGRTGKLFAQEHAGICPDIMCVG 277
Query: 271 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 330
K ITGGYL L+ V++T F+H ++ NP AC ++ LEI
Sbjct: 278 KAITGGYLTLAAVIST-RNVANVISGGRTGCFMHGPTFMANPAACAVSVRNLEIIKTGAW 336
Query: 331 LQRISQDMKKITKALTSLIT--HPKIINFRQKGMIWAFDVIIEDPEQIET-FSKKFFVAA 387
++ K + K L+ H KI R G + +IE QI+ +K FV
Sbjct: 337 ETQVHNIEKILQKKFKPLMESGHRKIKEIRVLGAVG----VIEMNNQIDVALYQKSFVDL 392
Query: 388 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+ +RP G +Y+MPPYI+++ ++ H+ ++
Sbjct: 393 ---GVWVRPFGKLLYIMPPYIISEEDLNHLVDSL 423
|
|
| UNIPROTKB|Q5A975 BIO31 "Putative uncharacterized protein BIO31" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 142/394 (36%), Positives = 208/394 (52%)
Query: 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91
+G+ +D +SSWW + G+++ +N AL Q+N + HVM +TH P I+L L LT
Sbjct: 44 TGQSLIDGMSSWWCAIHGYNHKDLNDALIKQVNIMSHVMFGGITHDPAIQLCRLLVELTN 103
Query: 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ- 150
KL F G+ +VEVALK + YW +K KKKF+ ++ YHG+T GA+ V++ Q
Sbjct: 104 PKLECVFLCDSGSVSVEVALKQAIQYWDSKEQPEKKKFLSIKRGYHGDTFGAMFVSDPQN 163
Query: 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPL 210
S IYTS P + G+ +E I D + +KK+H EP+
Sbjct: 164 SMHSIYTSYGPDNIFAEAPQ---VGFGDEWDETD---IEDFKQKIKKHHKIIAAVILEPV 217
Query: 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270
+Q AGGM Y YLK VRE+C+ YN+ L+ DEIA G GRTGK FA EHA I PD +C+
Sbjct: 218 LQGAGGMRTYHPQYLKRVRELCDKYNVLLVLDEIATGFGRTGKLFAQEHAGICPDIMCVG 277
Query: 271 KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNI 330
K ITGGYL L+ V++T F+H ++ NP AC ++ LEI
Sbjct: 278 KAITGGYLTLAAVIST-RNVANVISGGRTGCFMHGPTFMANPAACAVSVRNLEIIKTGAW 336
Query: 331 LQRISQDMKKITKALTSLIT--HPKIINFRQKGMIWAFDVIIEDPEQIET-FSKKFFVAA 387
++ K + K L+ H KI R G + +IE QI+ +K FV
Sbjct: 337 ETQVHNIEKILQKKFKPLMESGHRKIKEIRVLGAVG----VIEMNNQIDVALYQKSFVDL 392
Query: 388 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+ +RP G +Y+MPPYI+++ ++ H+ ++
Sbjct: 393 ---GVWVRPFGKLLYIMPPYIISEEDLNHLVDSL 423
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q74CT9 | BIOA_GEOSL | 2, ., 6, ., 1, ., 6, 2 | 0.3566 | 0.9604 | 0.9116 | yes | N/A |
| B7GHM5 | BIOA_ANOFW | 2, ., 6, ., 1, ., 6, 2 | 0.3636 | 0.9488 | 0.8986 | yes | N/A |
| P0A4X7 | BIOA_MYCBO | 2, ., 6, ., 1, ., 6, 2 | 0.3316 | 0.8581 | 0.8443 | yes | N/A |
| P0A4X6 | BIOA_MYCTU | 2, ., 6, ., 1, ., 6, 2 | 0.3316 | 0.8581 | 0.8443 | yes | N/A |
| Q89AK4 | BIOA_BUCBP | 2, ., 6, ., 1, ., 6, 2 | 0.3602 | 0.8837 | 0.8857 | yes | N/A |
| P45488 | BIOA_MYCLE | 2, ., 6, ., 1, ., 6, 2 | 0.3282 | 0.8720 | 0.8600 | yes | N/A |
| Q9FCC2 | BIOA_STRCO | 2, ., 6, ., 1, ., 6, 2 | 0.2932 | 0.8837 | 0.8878 | yes | N/A |
| Q728P4 | BIOA_DESVH | 2, ., 6, ., 1, ., 6, 2 | 0.3143 | 0.9116 | 0.7232 | yes | N/A |
| Q2FVJ6 | BIOA_STAA8 | 2, ., 6, ., 1, ., 6, 2 | 0.3491 | 0.9418 | 0.8960 | yes | N/A |
| P12677 | BIOA_SALTY | 2, ., 6, ., 1, ., 6, 2 | 0.3300 | 0.9186 | 0.9207 | yes | N/A |
| Q8K9P0 | BIOA_BUCAP | 2, ., 6, ., 1, ., 6, 2 | 0.3629 | 0.7976 | 0.7939 | yes | N/A |
| P44426 | BIOA_HAEIN | 2, ., 6, ., 1, ., 6, 2 | 0.3538 | 0.8744 | 0.8744 | yes | N/A |
| P57379 | BIOA_BUCAI | 2, ., 6, ., 1, ., 6, 2 | 0.3888 | 0.8813 | 0.8855 | yes | N/A |
| P53555 | BIOK_BACSU | 2, ., 6, ., 1, ., - | 0.3627 | 0.9767 | 0.9375 | yes | N/A |
| Q58696 | BIOA_METJA | 2, ., 6, ., 1, ., 6, 2 | 0.3515 | 0.9627 | 0.8980 | yes | N/A |
| O25627 | BIOA_HELPY | 2, ., 6, ., 1, ., 6, 2 | 0.4566 | 0.9372 | 0.9243 | yes | N/A |
| P22805 | BIOA_LYSSH | 2, ., 6, ., 1, ., 6, 2 | 0.4543 | 0.9465 | 0.8945 | yes | N/A |
| O66557 | BIOA_AQUAE | 2, ., 6, ., 1, ., 6, 2 | 0.3595 | 0.9465 | 0.8984 | yes | N/A |
| P46395 | BIOA_CORGL | 2, ., 6, ., 1, ., 6, 2 | 0.3128 | 0.8720 | 0.8865 | yes | N/A |
| Q9ZKM5 | BIOA_HELPJ | 2, ., 6, ., 1, ., 6, 2 | 0.4590 | 0.9372 | 0.9179 | yes | N/A |
| P50277 | BIOA_YEAST | 2, ., 6, ., 1, ., 6, 2 | 0.3078 | 0.9093 | 0.8145 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PRK06943 | 453 | PRK06943, PRK06943, adenosylmethionine--8-amino-7- | 0.0 | |
| TIGR00508 | 417 | TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon | 0.0 | |
| PRK07030 | 466 | PRK07030, PRK07030, adenosylmethionine--8-amino-7- | 0.0 | |
| PRK05964 | 423 | PRK05964, PRK05964, adenosylmethionine--8-amino-7- | 1e-178 | |
| COG0161 | 449 | COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon | 1e-168 | |
| PRK08742 | 472 | PRK08742, PRK08742, adenosylmethionine--8-amino-7- | 1e-139 | |
| cd00610 | 413 | cd00610, OAT_like, Acetyl ornithine aminotransfera | 1e-131 | |
| PRK06916 | 460 | PRK06916, PRK06916, adenosylmethionine--8-amino-7- | 1e-123 | |
| pfam00202 | 338 | pfam00202, Aminotran_3, Aminotransferase class-III | 1e-109 | |
| PRK07986 | 428 | PRK07986, PRK07986, adenosylmethionine--8-amino-7- | 1e-104 | |
| PRK06173 | 429 | PRK06173, PRK06173, adenosylmethionine--8-amino-7- | 5e-94 | |
| COG0160 | 447 | COG0160, GabT, 4-aminobutyrate aminotransferase an | 7e-87 | |
| PRK05630 | 422 | PRK05630, PRK05630, adenosylmethionine--8-amino-7- | 9e-85 | |
| COG4992 | 404 | COG4992, ArgD, Ornithine/acetylornithine aminotran | 1e-81 | |
| PRK07481 | 449 | PRK07481, PRK07481, hypothetical protein; Provisio | 7e-79 | |
| PRK02627 | 396 | PRK02627, PRK02627, acetylornithine aminotransfera | 3e-77 | |
| PRK07483 | 443 | PRK07483, PRK07483, hypothetical protein; Provisio | 2e-72 | |
| TIGR00707 | 379 | TIGR00707, argD, transaminase, acetylornithine/suc | 5e-72 | |
| PRK06917 | 447 | PRK06917, PRK06917, hypothetical protein; Provisio | 2e-69 | |
| PRK01278 | 389 | PRK01278, argD, acetylornithine transaminase prote | 1e-68 | |
| PRK06105 | 460 | PRK06105, PRK06105, aminotransferase; Provisional | 9e-67 | |
| PRK07480 | 456 | PRK07480, PRK07480, putative aminotransferase; Val | 1e-63 | |
| PRK08117 | 433 | PRK08117, PRK08117, 4-aminobutyrate aminotransfera | 2e-62 | |
| PRK07678 | 451 | PRK07678, PRK07678, aminotransferase; Validated | 4e-62 | |
| PRK13360 | 442 | PRK13360, PRK13360, omega amino acid--pyruvate tra | 2e-61 | |
| PRK09221 | 445 | PRK09221, PRK09221, beta alanine--pyruvate transam | 2e-60 | |
| PRK06541 | 460 | PRK06541, PRK06541, hypothetical protein; Provisio | 1e-59 | |
| PRK07036 | 466 | PRK07036, PRK07036, hypothetical protein; Provisio | 2e-59 | |
| PRK11522 | 459 | PRK11522, PRK11522, putrescine--2-oxoglutarate ami | 1e-58 | |
| PRK05769 | 441 | PRK05769, PRK05769, 4-aminobutyrate aminotransfera | 6e-58 | |
| PRK03244 | 398 | PRK03244, argD, acetylornithine aminotransferase; | 1e-57 | |
| PTZ00125 | 400 | PTZ00125, PTZ00125, ornithine aminotransferase-lik | 2e-56 | |
| TIGR03372 | 442 | TIGR03372, putres_am_tran, putrescine aminotransfe | 2e-56 | |
| PRK06082 | 459 | PRK06082, PRK06082, 4-aminobutyrate aminotransfera | 1e-55 | |
| PLN02760 | 504 | PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans | 4e-54 | |
| PRK12403 | 460 | PRK12403, PRK12403, putative aminotransferase; Pro | 2e-50 | |
| PRK06062 | 451 | PRK06062, PRK06062, hypothetical protein; Provisio | 4e-50 | |
| PRK05965 | 459 | PRK05965, PRK05965, hypothetical protein; Provisio | 7e-50 | |
| TIGR01885 | 401 | TIGR01885, Orn_aminotrans, ornithine aminotransfer | 1e-47 | |
| PLN00144 | 382 | PLN00144, PLN00144, acetylornithine transaminase | 5e-46 | |
| PRK08360 | 443 | PRK08360, PRK08360, 4-aminobutyrate aminotransfera | 5e-46 | |
| TIGR00709 | 442 | TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase | 2e-45 | |
| TIGR00700 | 420 | TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf | 2e-43 | |
| TIGR02407 | 412 | TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu | 3e-43 | |
| PRK04013 | 364 | PRK04013, argD, acetylornithine/acetyl-lysine amin | 3e-42 | |
| PRK05093 | 403 | PRK05093, argD, bifunctional N-succinyldiaminopime | 1e-41 | |
| PLN02624 | 474 | PLN02624, PLN02624, ornithine-delta-aminotransfera | 2e-41 | |
| TIGR03246 | 397 | TIGR03246, arg_catab_astC, succinylornithine trans | 4e-41 | |
| PRK08088 | 425 | PRK08088, PRK08088, 4-aminobutyrate aminotransfera | 2e-40 | |
| PRK02936 | 377 | PRK02936, argD, acetylornithine aminotransferase; | 2e-40 | |
| PRK09264 | 425 | PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat | 2e-39 | |
| PLN02974 | 817 | PLN02974, PLN02974, adenosylmethionine-8-amino-7-o | 9e-39 | |
| PRK07482 | 461 | PRK07482, PRK07482, hypothetical protein; Provisio | 2e-38 | |
| PRK03715 | 395 | PRK03715, argD, acetylornithine transaminase prote | 3e-38 | |
| PRK04073 | 396 | PRK04073, rocD, ornithine--oxo-acid transaminase; | 7e-38 | |
| PRK08593 | 445 | PRK08593, PRK08593, 4-aminobutyrate aminotransfera | 8e-38 | |
| PRK12381 | 406 | PRK12381, PRK12381, bifunctional succinylornithine | 1e-37 | |
| PRK06918 | 451 | PRK06918, PRK06918, 4-aminobutyrate aminotransfera | 2e-37 | |
| PRK04260 | 375 | PRK04260, PRK04260, acetylornithine aminotransfera | 3e-36 | |
| PRK06931 | 459 | PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat | 5e-36 | |
| PRK07495 | 425 | PRK07495, PRK07495, 4-aminobutyrate aminotransfera | 1e-35 | |
| PRK06058 | 443 | PRK06058, PRK06058, 4-aminobutyrate aminotransfera | 1e-35 | |
| PRK00854 | 401 | PRK00854, rocD, ornithine--oxo-acid transaminase; | 2e-35 | |
| PRK06777 | 421 | PRK06777, PRK06777, 4-aminobutyrate aminotransfera | 1e-34 | |
| PRK09792 | 421 | PRK09792, PRK09792, 4-aminobutyrate transaminase; | 1e-34 | |
| PRK05639 | 457 | PRK05639, PRK05639, 4-aminobutyrate aminotransfera | 2e-31 | |
| PRK04612 | 408 | PRK04612, argD, acetylornithine transaminase prote | 4e-31 | |
| PRK06938 | 464 | PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat | 2e-29 | |
| COG0001 | 432 | COG0001, HemL, Glutamate-1-semialdehyde aminotrans | 6e-23 | |
| PRK06149 | 972 | PRK06149, PRK06149, hypothetical protein; Provisio | 1e-22 | |
| PRK06148 | 1013 | PRK06148, PRK06148, hypothetical protein; Provisio | 1e-22 | |
| TIGR00713 | 423 | TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin | 2e-20 | |
| TIGR03251 | 431 | TIGR03251, LAT_fam, L-lysine 6-transaminase | 7e-20 | |
| PRK08297 | 443 | PRK08297, PRK08297, L-lysine aminotransferase; Pro | 7e-20 | |
| PLN02482 | 474 | PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a | 5e-19 | |
| TIGR00699 | 464 | TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran | 1e-18 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 1e-14 | |
| PRK12389 | 428 | PRK12389, PRK12389, glutamate-1-semialdehyde amino | 1e-11 | |
| PRK00615 | 433 | PRK00615, PRK00615, glutamate-1-semialdehyde amino | 8e-11 | |
| PRK07046 | 453 | PRK07046, PRK07046, aminotransferase; Validated | 7e-07 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 0.001 | |
| PRK06209 | 431 | PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a | 0.001 | |
| PRK00062 | 426 | PRK00062, PRK00062, glutamate-1-semialdehyde amino | 0.004 |
| >gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 627 bits (1618), Expect = 0.0
Identities = 222/405 (54%), Positives = 297/405 (73%), Gaps = 2/405 (0%)
Query: 26 WSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85
W L D G+RYLDAISSWWVNLFGH+N IN ALK+QL+ LEH ML+ TH+P I+L+E+
Sbjct: 47 W-LYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAER 105
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L++LT LGH F+ SDGASAVE+ALKMSFH W N+G +K++F+CL N YHGET+GAL
Sbjct: 106 LAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALG 165
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205
VT++ FK+ Y L+ +++ +PD+R G +A ++A A+ D+ L + KIAA+
Sbjct: 166 VTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAAL 225
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
I+EPLVQCA GM M+D YL+ +R +C+ Y +HLIADEIAVGCGRTG FFACE A +WPD
Sbjct: 226 IVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPD 285
Query: 266 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325
FLCLSKGI+GGYLPLSLV++ D I+ + Y + FLHSHSY+GNPLAC AALATL++F
Sbjct: 286 FLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLF 345
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 385
+D++L R ++ ++ AL L HP++ + RQ+G I+AFDV + D + TFS++FF
Sbjct: 346 AEDDVLARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVAL-DGDAARTFSRRFFE 404
Query: 386 AALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
AAL+ ELLLRPIG TVYLMPPY+L+ +EI + T + +
Sbjct: 405 AALERELLLRPIGTTVYLMPPYVLDDDEIAWLAERTRATLDATLA 449
|
Length = 453 |
| >gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 558 bits (1440), Expect = 0.0
Identities = 175/418 (41%), Positives = 259/418 (61%), Gaps = 9/418 (2%)
Query: 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH 68
K + L I + + L D G+ Y+D ISSWWVN+ GH++ IN A+K QL+KLEH
Sbjct: 9 KDALPPLPIERAEGVY---LYDEDGREYIDGISSWWVNIHGHNHPEINAAIKEQLDKLEH 65
Query: 69 VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128
VM LTH+P I+L+E+L +T L F+ G+ AVEVALKM+ YW N+G K +
Sbjct: 66 VMFGGLTHEPAIELAERLVEITPEGLEKVFFSDSGSVAVEVALKMALQYWQNQGRPGKTR 125
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188
F+ +N YHG+T GA++V ++ F ++ LL + I P ++ +
Sbjct: 126 FLAFRNGYHGDTFGAMSVGDVGGFHALFEPLLFEVVFIPAPPCYR---CWDPDDCEAECL 182
Query: 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
LE LL+++ ++IAA I+EPLVQ AGGM Y YL+ +RE+C+ Y + LIADEIA G
Sbjct: 183 AALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGF 242
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308
GRTGK FACEHA + PD LCLSKG+TGGYLPL+ +TTD+IY + Y + F+H H+Y
Sbjct: 243 GRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTY 302
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDV 368
+GNPLAC AALA+L++ +++ L+++++ ++ L L HP + + R G I A ++
Sbjct: 303 TGNPLACAAALASLDLLEEEDWLEQVARIEAQLRAGLAPLRDHPGVADVRVLGAIGAVEL 362
Query: 369 IIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + K L+ +LLRP+GN +YLMPPYI+ E++ +T+AI + +
Sbjct: 363 VRDVEPY---IGAKIQQFFLERGVLLRPLGNVIYLMPPYIITDEELEKLTAAIKEAID 417
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417 |
| >gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 512 bits (1321), Expect = 0.0
Identities = 200/409 (48%), Positives = 274/409 (66%), Gaps = 13/409 (3%)
Query: 17 IRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH 76
IR + W L D GKRYLDA+SSWWVN+FGH+N IN+ +K+Q+++LEHV+L+ +H
Sbjct: 33 IRRGEGVW---LEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSH 89
Query: 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSY 136
+PVI+LSE+L +T L CFY +G+SA+EVALKMSFHYW N+G KK+F+ L NSY
Sbjct: 90 EPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSY 149
Query: 137 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
HGETL A++V ++ F E Y LL T + +PD +G S E +R +E L
Sbjct: 150 HGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLA 209
Query: 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
++H++IAA+I+EPL+Q AGGM MY +YLKL+RE C+ Y +HLI DEIAVG GRTG FA
Sbjct: 210 EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFA 269
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLA 314
CE A I PDFLCLSK +TGGYLPL+ V+TTD +Y + Y Y + FLHSHSY+GNPLA
Sbjct: 270 CEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDY-PTLRAFLHSHSYTGNPLA 328
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AALATL+IF +DN+++ +++ +A L HP + RQ GMI A + +++D
Sbjct: 329 CAAALATLDIFEQDNVIENNRALARRMAEATAHLADHPHVAEVRQTGMILAIE-MVQDKA 387
Query: 375 QIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 417
+ K + AL+ LLRP+G+ VY +PPY++ +I +
Sbjct: 388 SKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPPYVITPEQIDFL 436
|
Length = 466 |
| >gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 504 bits (1301), Expect = e-178
Identities = 160/414 (38%), Positives = 246/414 (59%), Gaps = 16/414 (3%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ I + ++ L G+ +DAISSWWV GH++ YI++A++ QL++L+HV+ +
Sbjct: 26 IPIVRAEGAY---LYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGF 82
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH+P +L+++L +LT L H F+ G+ AVEVALKM+ YW N+G + +F+ L+
Sbjct: 83 THEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRG 142
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
YHG+T+G ++V + +YT LL + P + + + LE L
Sbjct: 143 GYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFP----------PDGYEQATLDALEAL 192
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
L+K+ +IAA I+EPLVQ AGGM+ YD YL +R IC+ + + LI DEIA G GRTG
Sbjct: 193 LEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTL 252
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FACE A + PD +CLSKG+TGGYLPL+ + T +I+ + Y + F+HS SY+ NPLA
Sbjct: 253 FACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLA 312
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE 374
C AA A+L++F + +L+R++ + + L P + + R G I A ++ E
Sbjct: 313 CAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLE 372
Query: 375 QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ AL+ +LLRP+GNT+YLMPPYI+ E+ +T AI + +E+
Sbjct: 373 RD---GPALRAFALERGVLLRPLGNTIYLMPPYIITAEELDRITDAIVEVADEL 423
|
Length = 423 |
| >gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 478 bits (1233), Expect = e-168
Identities = 175/411 (42%), Positives = 248/411 (60%), Gaps = 12/411 (2%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D+ G+RYLD +S W GH I +A+K QL+KL HVM TH+P I+L+EKL+
Sbjct: 38 LTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLA 97
Query: 88 SLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
L + L H F+ G+ AVE ALKM+ YW +G +KKFI +N YHG+TLGA++V
Sbjct: 98 ELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSV 157
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNH-NKIA 203
Y LL + + P + R G E A A +LE L+ ++ IA
Sbjct: 158 GGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAAD-ELEALILEHGPETIA 216
Query: 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
A I+EP+V AGGM++ YLK VREIC+ Y I LIADE+A G GRTGK FACEHA I
Sbjct: 217 AFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIV 276
Query: 264 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323
PD LCL+KG+TGGYLPLS V+T+D+IY + + F+H H+YSGNPLAC AALA L+
Sbjct: 277 PDILCLAKGLTGGYLPLSAVLTSDRIYEAF-SDGDAGAFMHGHTYSGNPLACAAALANLD 335
Query: 324 IFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK- 381
I ++++L+R+++ + L + + HP + + R G+I A + ++ D F
Sbjct: 336 ILEEEDLLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIE-LVADKATKTPFEAR 394
Query: 382 ---KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
+ AAL+ LL+RP+G+ +YLMPP I+ + EI + A+ + +E +
Sbjct: 395 VGARVRAAALERGLLIRPLGDVIYLMPPLIITREEIDELVDALREALDETL 445
|
Length = 449 |
| >gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-139
Identities = 172/415 (41%), Positives = 258/415 (62%), Gaps = 13/415 (3%)
Query: 26 WSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85
W L+ G+RYLDA+SSWW NLFGH+ I A+ Q +LE VML+ TH+P ++L+E+
Sbjct: 57 W-LVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQ 115
Query: 86 LSSLTQYK-----LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
L ++ + L FY +G++ VEVALKM+FHY++N+G + +FI L+N YHGET
Sbjct: 116 LLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGET 175
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
+GALAV +I ++ +Y LL ++ +PD+ G SA + A A L+ L +++
Sbjct: 176 IGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPG 235
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
+I A+I+EP +QCAGGM M+ YL+ RE+C+ + LIADEIA G GRTG FACE A
Sbjct: 236 EICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQA 295
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
+ PD LCLSKG+TGG+LPLS V+ T ++Y++ + FLHSHSY+GNPLAC AALA
Sbjct: 296 GVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALA 355
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380
TL+IF D+++ R ++T+ + HP + + RQ GM+ AF+ + + F
Sbjct: 356 TLDIFADDDVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFE-LTRGGNKRTPFP 414
Query: 381 K------KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
+ AAL ++LRP+G+ +Y MPPY +++ ++ + +E +
Sbjct: 415 PAARVGLHAYRAALARGVVLRPLGDVLYWMPPYCVDEAQLALLADTTRHAIDEAV 469
|
Length = 472 |
| >gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-131
Identities = 141/416 (33%), Positives = 224/416 (53%), Gaps = 27/416 (6%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
LVI + ++ L DV G RYLD +S V GH++ + +ALK QL KL H L
Sbjct: 20 LVIVRAEGAY---LYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFF 76
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
++P ++L+E L +LT L F+ + G AVE ALK++ Y +KK I +
Sbjct: 77 YNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAYT------GRKKIISFEG 130
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
+YHG TLGAL++T + ++ + LL + P R A+++ LE
Sbjct: 131 AYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPY-RYRPPAELADDLE-----ALEEA 184
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
L+++ ++AA+I+EP +Q GG+I+ YLK +RE+C + I LIADE+ G GRTGK
Sbjct: 185 LEEHPEEVAAVIVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKM 243
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FA EH + PD + L KG+ GG LPL V+ ++I ++ LH ++ GNPLA
Sbjct: 244 FAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFPAGP----GLHGGTFGGNPLA 298
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDP 373
C AALA LE+ ++ +L+ ++ + + + L L ++ + R +G++ + +++D
Sbjct: 299 CAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIE-LVKDR 357
Query: 374 EQIETFSK---KFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425
+ K AAL+ LLLRP G N + L+PP I+ + EI A+ +
Sbjct: 358 ATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL 413
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413 |
| >gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 365 bits (940), Expect = e-123
Identities = 165/411 (40%), Positives = 250/411 (60%), Gaps = 10/411 (2%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV+G Y D +SS W+N+ GH +++A++ QLNK+ H L L + P I L+EKL
Sbjct: 50 LYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLI 109
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+ L FY GA+AVE+A+KM+F YW NKG K++F+ L+N+YHG+T+GA++V
Sbjct: 110 EVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVG 169
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207
I F ++Y+SLL + + P + GN EI + + +LE LLK+ H +IAAII+
Sbjct: 170 AIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIV 229
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
EPLVQ AGGMI YLK +R +C YN+ I DE+A G GRTGK FACEH + PD +
Sbjct: 230 EPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIM 289
Query: 268 CLSKGITGGYLPLSLVMTTDKIYNSIY--YKNNINIFLHSHSYSGNPLACCAALATLEIF 325
KG+TGGYLP+++ +TTD+IYN+ Y Y F H HSY+GNPL C ALA LE++
Sbjct: 290 TAGKGLTGGYLPIAITVTTDEIYNAFYGDY-EEQKTFFHGHSYTGNPLGCAVALANLELY 348
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF--SKKF 383
K N+++++++ + + L L + + RQ G++ + ++++ E E F +++
Sbjct: 349 EKTNLIEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIE-LVKNKETKEPFEWTERV 407
Query: 384 FVAALKNE----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
V K +L RP+GNT+ MPP +E+ M +++ ++V
Sbjct: 408 GVQVCKRSRELGMLTRPLGNTIVFMPPLASTIDELDEMLRILYKAISDVTE 458
|
Length = 460 |
| >gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-109
Identities = 129/347 (37%), Positives = 187/347 (53%), Gaps = 17/347 (4%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
K W L DV G+RYLD +S V GH + I +A+K Q +KL H T +P +
Sbjct: 6 KGVW---LYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEPAL 62
Query: 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET 140
+L+EKL+ LT L F+ + G+ A E A+K++ Y KG K K I +HG T
Sbjct: 63 QLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLARQYAKKKGATGKTKIIAFSGGFHGRT 122
Query: 141 LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200
LGAL+VT +K+ + L Y + PD +A E CA L ++ + +
Sbjct: 123 LGALSVTGSSGYKKGFGPSLPGVYFLPYPDLE------AAEEELACADEALRLIKAVHDD 176
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
IAA+I+EP +Q GG++ +L +REIC + + LIADE+ G GRTGK FACEH
Sbjct: 177 NIAAVIVEP-IQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGKLFACEHY 235
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320
+ PD + L+K +TGG PLS V+ T +I + + H ++ GNPLAC AALA
Sbjct: 236 GVTPDIMTLAKALTGGL-PLSAVLATAEIMQAFH------PGSHGGTFGGNPLACAAALA 288
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 367
L+I +N+LQ + + K L +L P I + R KG++ A +
Sbjct: 289 VLDIIEDENLLQNAQEKGDYLRKGLLALQDKPVIGDVRGKGLMIAIE 335
|
Length = 338 |
| >gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = e-104
Identities = 143/391 (36%), Positives = 223/391 (57%), Gaps = 15/391 (3%)
Query: 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91
G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL ++T
Sbjct: 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTP 100
Query: 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ- 150
L F G+ AVEVA+KM+ YW KG +++F+ L++ YHG+T GA++V +
Sbjct: 101 QPLECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDN 159
Query: 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210
S +Y L + P SR + + + I L+ + ++IAA+I+EP+
Sbjct: 160 SMHSLYKGYLPENLFAPAPQSRFDGEWDERD------IAPFARLMAAHRHEIAAVILEPI 213
Query: 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270
VQ AGGM +Y +LK VR++C+ I LIADEIA G GRTGK FACEHA I PD LCL
Sbjct: 214 VQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLG 273
Query: 271 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330
K +TGG + LS +TT ++ +I F+H ++ GNPLAC A A+L + +
Sbjct: 274 KALTGGTMTLSATLTTREVAETI-SNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDW 332
Query: 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 390
Q+++ ++ + L L P + + R G I V P + ++FFV +
Sbjct: 333 QQQVAAIEAQLREELAPLRDAPMVADVRVLGAIGV--VETTRPVNMAAL-QRFFV---EQ 386
Query: 391 ELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+ +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 387 GVWIRPFGKLIYLMPPYIILPEQLQRLTAAV 417
|
Length = 428 |
| >gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 5e-94
Identities = 135/397 (34%), Positives = 220/397 (55%), Gaps = 14/397 (3%)
Query: 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92
G+R +D +SSWW L G+++ +N A NQL K+ H+M TH+P ++L++KL +
Sbjct: 43 GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPP 102
Query: 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQS 151
L F+ G+ AVEVA+KM+ Y KG + + KF +++ YHG+T A++V + +
Sbjct: 103 SLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTG 162
Query: 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211
++ L Y + P +I G N+ AI L+ LL++ ++IAA+I+EP+V
Sbjct: 163 MHGLFNHSLPVQYFLPQP---SIKFGEEWND---EAIEPLQDLLEQKGDEIAALILEPVV 216
Query: 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271
Q AGGM Y YL RE+C+ Y + LI DEIA G GRTGK FA EHA + PD +C+ K
Sbjct: 217 QGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGK 276
Query: 272 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331
+TGGYL LS +TT+ I +I F+H ++ NPLAC A ++ + +
Sbjct: 277 ALTGGYLTLSATITTEAIAQTI-CSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQ 335
Query: 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391
Q I + ++ + L + R G I + +++P + T +F +++
Sbjct: 336 QNIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVE--MKEPVNMATLQPRF----VEHG 389
Query: 392 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ +RP G VY+MPP+I++ +E+ +TS + + +
Sbjct: 390 IWVRPFGKLVYIMPPFIISPDELSQLTSGLLRVLKQE 426
|
Length = 429 |
| >gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 7e-87
Identities = 135/431 (31%), Positives = 218/431 (50%), Gaps = 39/431 (9%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
LVI + ++ L DV G YLD +S V GH++ + +A+K QL KL H +L
Sbjct: 40 LVIVRAEGAY---LYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDL 96
Query: 75 THKPVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++P ++L+EKL++L L F+G+ GA AVE A+K++ Y + I
Sbjct: 97 YYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFD 150
Query: 134 NSYHGETLGALAVTNIQSF-KEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA---- 187
++HG TLGAL++T + K + L Y + P+ R
Sbjct: 151 GAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIE 210
Query: 188 --IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245
+FDLE+ ++AAIIIEP +Q GG+I+ +LK +R++C + I LIADE+
Sbjct: 211 RALFDLEV----GPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ 265
Query: 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS 305
G GRTGK FA EH + PD + L+K + GG LPLS V+ +I + H
Sbjct: 266 TGFGRTGKMFAFEHFGVEPDIVTLAKSL-GGGLPLSAVVGRAEI-------MDWPPGGHG 317
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIW 364
++ GNP+AC AALA L++ ++N+L+R ++ + + L L HP I + R G++
Sbjct: 318 GTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMI 377
Query: 365 AFDVIIEDPEQIE---TFSKKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMT 418
+ +++D + E + K A + LLL P GN + ++PP ++ E+
Sbjct: 378 GVE-LVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGL 436
Query: 419 SAIFQTFNEVI 429
+ + E +
Sbjct: 437 DILEEALKEAL 447
|
Length = 447 |
| >gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 265 bits (678), Expect = 9e-85
Identities = 135/390 (34%), Positives = 212/390 (54%), Gaps = 15/390 (3%)
Query: 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92
G +DA+SSWW GH + + A Q++ + HVM LTH+P IKL+ KL +LT
Sbjct: 39 GSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDN 98
Query: 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS- 151
L H FY G+ +VEVA+KM+ Y +G + + + ++ YHG+T A++V + +
Sbjct: 99 GLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGG 158
Query: 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211
++ L + P R G+S EI+ + LE+L+ +AAIIIEP+V
Sbjct: 159 MHSLWKGTLPEQIFAPAPPVR----GSSPQEISE-YLRSLELLID---ETVAAIIIEPIV 210
Query: 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271
Q AGGM +D ++ VR +C+ ++I LIADEIA G GRTG+ FA A + PD +C+ K
Sbjct: 211 QGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGK 270
Query: 272 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331
+TGG++ + + TDK+ I N +H ++ NPLAC A A+LEI
Sbjct: 271 ALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWR 330
Query: 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391
+++ + ++ L+ L P + + R G I V +E P +E ++ AA+ +
Sbjct: 331 KQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGV--VEMEQPVDMEEATQ----AAVDHG 384
Query: 392 LLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
+ LRP G VY+MPPYI +I + +A+
Sbjct: 385 VWLRPFGRLVYVMPPYITTSEQIAQICAAL 414
|
Length = 422 |
| >gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-81
Identities = 130/439 (29%), Positives = 211/439 (48%), Gaps = 53/439 (12%)
Query: 1 MNNIVYFKKKSSNN-----LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYI 55
I F K +VI + ++ W D G+ YLD + VN GH + +
Sbjct: 7 AATIELFMKYLMPTYGRLPVVIVRGEGAYVW---DQQGREYLDFAAGIAVNNLGHCHPAL 63
Query: 56 NKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114
+ALK Q KL HV SNL ++P +L+EKL L+ F+ + GA A E ALK++
Sbjct: 64 VEALKEQAEKLWHV--SNLFYNEPQAELAEKLVELSP-FADRVFFCNSGAEANEAALKLA 120
Query: 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNI 174
Y + K K I +NS+HG TLGAL+ T +++ + LL P R++
Sbjct: 121 RKYTGDP---EKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLL--------PGFRHV 169
Query: 175 NKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 234
D+E L AA+I+EP +Q GG+I +LK +RE+C+
Sbjct: 170 PFN------------DIEALEAAIDEDTAAVIVEP-IQGEGGVIPAPPEFLKALRELCDE 216
Query: 235 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 294
+ LI DE+ G GRTGK FA EH + PD L L+K + GG+ P+ ++ T++I
Sbjct: 217 HGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEI----- 270
Query: 295 YKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPK 353
+ H ++ GNPLAC ALA LE+ ++ +L+ + + + + + L L +P
Sbjct: 271 -ASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLRELKRRYPL 329
Query: 354 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE--LLLRPIGNTVYLMPPYILNK 411
+ R +G++ + +++P + + V AL+ E L+L N + +PP ++ +
Sbjct: 330 VKEVRGRGLMIGIE--LKEPYRA-----RDIVRALREEGVLVLPAGPNVIRFLPPLVITE 382
Query: 412 NEIQHMTSAIFQTFNEVIT 430
EI A+ +
Sbjct: 383 EEIDEALDALERALAAASA 401
|
Length = 404 |
| >gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 7e-79
Identities = 133/416 (31%), Positives = 219/416 (52%), Gaps = 20/416 (4%)
Query: 28 LIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEK 85
+ D+ GK+ LD + W VN+ GH+ + +A+ QL++LE + TH I+LS +
Sbjct: 36 VYDIDGKKLLDGVGGLWNVNV-GHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYE 94
Query: 86 LSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 144
L + + + F+ S G+ +VE ALK++ YW +G + KFI L+ YHG G
Sbjct: 95 LIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGA 154
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CA-IFDLEILLKKNHNK 201
+V F+ Y LL + + TP RN E+AR CA + + EI +
Sbjct: 155 SVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDT- 213
Query: 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 261
IAA I EP VQ AGG+I+ + + LVRE+C+ + I LIADE+ G GRTG +F
Sbjct: 214 IAAFIAEP-VQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWG 272
Query: 262 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALA 320
+ PD +CL+KGIT GY+PL M +I ++ + +H ++YSG+P+AC AALA
Sbjct: 273 VKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALA 332
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE-------D 372
TL+I ++++ ++ + + L L + + R KG++ A D++ + D
Sbjct: 333 TLDIVVREDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPID 392
Query: 373 PEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
P + ++ A +N +L+RP G + L PP ++ + ++ + A+ + V
Sbjct: 393 PSK--GYANAVADVARENGVLVRPSGTKIILSPPLVIQREDVDRIVDALDAGLSAV 446
|
Length = 449 |
| >gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 3e-77
Identities = 126/411 (30%), Positives = 208/411 (50%), Gaps = 47/411 (11%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPV 79
+ + W D GK YLD ++ VN GH + + +A++ Q KL H SNL + +P
Sbjct: 29 EGARLW---DDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHT--SNLYYIEPQ 83
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L+EKL L+ + F+ + GA A E A+K++ Y + KG K + I +NS+HG
Sbjct: 84 EELAEKLVELS--GMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGR 140
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
TL L+ T ++E + L+ + N D+E L
Sbjct: 141 TLATLSATGQPKYQEGFEPLV--------EGFIYV----PFN--------DIEALKAAIT 180
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+K AA+++EP +Q GG+ D YL+ +RE+C+ I LI DE+ G GRTGK FA +H
Sbjct: 181 DKTAAVMLEP-IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQH 239
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 319
I PD + L+KG+ GG +P+ V+ +K+ + + H ++ GNPLAC AAL
Sbjct: 240 YGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFTPGD------HGSTFGGNPLACAAAL 292
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIET 378
A +EI ++ +L+ ++ + + L L+ +P I R G++ + IE ++
Sbjct: 293 AVIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLM----IGIE----LDR 344
Query: 379 FSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ + AL+ LL+ G N + L+PP I++K EI + + E+
Sbjct: 345 PAAEIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLKEL 395
|
Length = 396 |
| >gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 2e-72
Identities = 126/420 (30%), Positives = 210/420 (50%), Gaps = 22/420 (5%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
LID +GKRYLDA V+ GHS+ + A+ Q+++L + S T +P L+++L
Sbjct: 24 LIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLV 83
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+ L H ++ S G+ AVE ALK++ Y+ G ++ FI + SYHG TLGALA+
Sbjct: 84 AAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIG 143
Query: 148 NIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEI-LLKKNHNKIAA 204
+E + LL + + ++ P R G S + +LE +L+ + +AA
Sbjct: 144 GNAWRREPFAPLLIEAHHVS-PCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAA 202
Query: 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
+ E +V G + Y K +RE+C+ Y + LI DE+ G GRTG FACE + P
Sbjct: 203 FVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAP 262
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324
D + ++KG+ GY P+ V+ +D+IY++I + F H H+Y G+ AC AALA +
Sbjct: 263 DLVTIAKGLGAGYQPIGAVLASDRIYDAI--ADGSGFFQHGHTYLGHATACAAALAVQRV 320
Query: 325 FNKDNILQRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 383
+D +L + +++ L L HP + + R +G+ + ++ D F
Sbjct: 321 IAEDGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVE-LVADRATKAPFDPAL 379
Query: 384 FVAA-LKNE-----LLLRPIGNT--------VYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
+ A +K E L++ P+G T V L PP+I+ +I + + + +
Sbjct: 380 KLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439
|
Length = 443 |
| >gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 5e-72
Identities = 131/410 (31%), Positives = 204/410 (49%), Gaps = 48/410 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ I K ++ + DV+GK YLD ++ VN GH++ + +ALK QL KL HV SNL
Sbjct: 11 VKIVRGKGAYVY---DVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHV--SNL 65
Query: 75 -THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
+P +L+EKL + F+ + GA A E ALK++ Y +KG KKK I +
Sbjct: 66 YYTEPQEELAEKLVEHS--GADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFE 122
Query: 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193
NS+HG T+GAL+ T +++ + L+ P D+E
Sbjct: 123 NSFHGRTMGALSATGQPKYQKGFEPLV--------PGFSYAPYN------------DIES 162
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
L K ++ AA+I+EP +Q GG+ + +LK +REIC + + LI DE+ G GRTGK
Sbjct: 163 LKKAIDDETAAVIVEP-IQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK 221
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FFA EH I PD + L+KG+ GG +P+ + +++ + + H ++ GNPL
Sbjct: 222 FFAYEHYGIEPDIITLAKGLGGG-VPIGATLAKEEVAEAFTPGD------HGSTFGGNPL 274
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP 373
AC AALA LE+ K+ +L+ + + + L L + R KG++ ++
Sbjct: 275 ACAAALAVLEVIEKERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIEL----- 329
Query: 374 EQIETFSKKFFVAALKNE-LLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421
K V + LL+ G + +PP I+ K EI SA+
Sbjct: 330 ----EAPCKDIVKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSAL 375
|
This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379 |
| >gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 2e-69
Identities = 126/435 (28%), Positives = 207/435 (47%), Gaps = 22/435 (5%)
Query: 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 70
VI K + L D +G +Y D S GH I A+K Q ++ V
Sbjct: 11 GQPYPVISHGKGVY---LYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVY 67
Query: 71 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130
S T +P KL++KLS L+ L F+ + G+ A E A+K++ ++ +G K K +
Sbjct: 68 RSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKIL 127
Query: 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190
SYHG T+GAL+++ ++ + SLL I+ P +
Sbjct: 128 SRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATE 187
Query: 191 LEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
LE +++ IAA I EP++ AG ++ Y K+++EIC++Y+I IADE+ G G
Sbjct: 188 LETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG 247
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTG FA EH + PD + L KG+ GY P++ + +D++ I + H+ S
Sbjct: 248 RTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPI--LRGSRSIMSGHTLS 305
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDV 368
NPL+ ALA LE K N+ ++ ++ + + K L + II + R KG++ +
Sbjct: 306 ANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVE- 364
Query: 369 IIEDPEQIETFSKKFFVAAL------KNELLLRPI--------GNTVYLMPPYILNKNEI 414
+ D + + FSK VA+ KN LLL P G+ V + PP + +E+
Sbjct: 365 FVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSEL 424
Query: 415 QHMTSAIFQTFNEVI 429
+ S ++ E++
Sbjct: 425 DELLSIFAKSVEEMM 439
|
Length = 447 |
| >gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 1e-68
Identities = 122/392 (31%), Positives = 187/392 (47%), Gaps = 46/392 (11%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV-IKLSEKL 86
LID G+RYLD S VN GH++ ++ +ALK Q KL HV SNL P +L+E+L
Sbjct: 25 LIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHV--SNLYRIPEQERLAERL 82
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ F+ + GA AVE A+K + Y Y KG + + I + ++HG TL +A
Sbjct: 83 VENSFADK--VFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA 140
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
+ + E + L+ P + G D+E L AAI+
Sbjct: 141 GGQEKYLEGFGPLV--------PGFDQVPFG------------DIEALKAAITPNTAAIL 180
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IEP +Q GG+ +LK +R++C+ + LI DE+ G GRTGK FA E A + PD
Sbjct: 181 IEP-IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI 239
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ ++KGI GG+ PL + T++ + H +Y GNPLA A L++
Sbjct: 240 MAVAKGIGGGF-PLGACLATEEAAKG------MTPGTHGSTYGGNPLAMAVGNAVLDVIL 292
Query: 327 KDNILQRISQDMKKITKALTSLI-THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFF 384
L + + + + L L+ P +I R KG++ ++ + +
Sbjct: 293 APGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVVPNRD---------L 343
Query: 385 VAALKNELLL-RPIG-NTVYLMPPYILNKNEI 414
V AL++E LL G N V L+PP I+ + EI
Sbjct: 344 VQALRDEGLLTVGAGDNVVRLLPPLIITEEEI 375
|
Length = 389 |
| >gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 9e-67
Identities = 126/417 (30%), Positives = 206/417 (49%), Gaps = 28/417 (6%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLS 87
D +GKRY++ ++ W G S + +A Q+ KL H S+ +H PVI L+EKL
Sbjct: 44 DDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYH-TFSHKSHGPVIDLAEKLV 102
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
++ + F+ + G+ A + +K+ ++Y G KKK I Q YHG T+ + ++T
Sbjct: 103 AMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLT 162
Query: 148 ----NIQSFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIA-RCAIFDLEIL-LKKN 198
N +SF L I+ T P R G S A R A +LE L L +
Sbjct: 163 GLPNNHRSFD------LPLDRILHTGCPHYYRFGLPGESEEAFATRLAN-ELEALILAEG 215
Query: 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 258
+ IAA I EP V AGG+I+ Y + ++ + Y+I L+ADE+ G GRTG F CE
Sbjct: 216 PDTIAAFIGEP-VMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCE 274
Query: 259 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCA 317
I PD L +SK ++ Y PLS V+ +K+Y+ I ++ I F H + SG+P+A
Sbjct: 275 TFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAV 334
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE 377
AL L I + +++ ++ ++ L +L HP + R G+I A + ++ D
Sbjct: 335 ALENLAIIEERDLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVE-LVADKATKT 393
Query: 378 TFSK------KFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
F + AA ++ ++ R +G+T+ PP I+ ++ M + ++V
Sbjct: 394 PFEPPGKVGARANAAAHEHGVISRAMGDTLAFCPPLIITAAQVDEMVDRFGRALDDV 450
|
Length = 460 |
| >gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 1e-63
Identities = 121/416 (29%), Positives = 196/416 (47%), Gaps = 47/416 (11%)
Query: 28 LIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNL----THKPVIKL 82
L D G + LD ++ W VN+ G+ + A Q+ +L + N TH P I+L
Sbjct: 44 LWDSEGNKILDGMAGLWCVNV-GYGRKELADAAARQMRELPYY---NTFFKTTHPPAIEL 99
Query: 83 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 142
+ KL+ + H F+ + G+ A + L+M HYW KG KK I +N YHG T+
Sbjct: 100 AAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVA 159
Query: 143 ALAVTNIQSFKEIYTSLLNKTYI-----ITTPDSRNIN--------KGNSANEIARCAIF 189
SL Y+ + P +I+ + E A
Sbjct: 160 G-------------ASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAAR 206
Query: 190 DLEI-LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
LE +L+ + +AA I EP +Q AGG+I+ + Y ++ IC Y+I L+ADE+ G
Sbjct: 207 QLEAKILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGF 265
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308
GRTG++F +H I PD + ++KG+T GY+P+ V D++ + + F H +Y
Sbjct: 266 GRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEG--GEFNHGFTY 323
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIWAFD 367
SG+P+A ALA L I + I++R+ D + K L L HP + R G++ A
Sbjct: 324 SGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAI- 382
Query: 368 VIIEDPEQIETFSKKFFVAAL------KNELLLRPIGNTVYLMPPYILNKNEIQHM 417
+++D E F V + N L++R +G+ + + PP ++ EI +
Sbjct: 383 ELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMIISPPLVITHAEIDEL 438
|
Length = 456 |
| >gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 2e-62
Identities = 131/426 (30%), Positives = 206/426 (48%), Gaps = 24/426 (5%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
K NL + + + + V GK YLD S V GH + + +A+K Q +KL H
Sbjct: 22 KDHPNLPVVKGEGCYYY---GVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHG 78
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
+ ++ ++KL+E+L+ +T L F+ + GA A+E ALK++ H
Sbjct: 79 PSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYI------ 132
Query: 130 ICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188
I +HG TLGAL+VT +S +++ Y LL Y P KG +
Sbjct: 133 ISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL 192
Query: 189 FDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
DLE L K ++AA+IIEP V GG I+ +LK +REIC+ + I LI DE+
Sbjct: 193 RDLESLFKHQVTPEEVAAVIIEP-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT 251
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306
G GRTG++FA + + PD + ++KGI G LPLS V+ + ++ + H
Sbjct: 252 GFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQ------WPLGSHGT 304
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWA 365
++ GNP+AC AALATLE+ ++ +L ++ + L L HP I + R G++
Sbjct: 305 TFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIG 364
Query: 366 FDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIF 422
+++ D E +K L+ LL GN + ++PP + K EI +
Sbjct: 365 IEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILD 424
Query: 423 QTFNEV 428
+ E
Sbjct: 425 EALTEY 430
|
Length = 433 |
| >gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 4e-62
Identities = 132/437 (30%), Positives = 212/437 (48%), Gaps = 34/437 (7%)
Query: 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVM 70
+ +V+ + +W + D+ G RYLD +S W VN+ G+ + +A QL L +
Sbjct: 28 NATMVVAKAEGAW---VTDIQGNRYLDGMSGLWCVNV-GYGRKELAEAAYEQLKTLSYFP 83
Query: 71 LSNLTHKPVIKLSEKLSSLTQYKLGH---CFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
L+ +H+P IKL+EKL+ LG F+ + G+ A E A K++ Y KG ++
Sbjct: 84 LTQ-SHEPAIKLAEKLNEW----LGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRY 138
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RC 186
KFI +YHG ++GALA T K Y L + PD + S + C
Sbjct: 139 KFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLEC 198
Query: 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
++ + IAA+I+EP++ GG++M Y+K V+EIC + LI+DE+
Sbjct: 199 VKEIDRVMTWELSETIAAVIMEPIIT-GGGVLMPPQDYMKAVKEICQKHGALLISDEVIC 257
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306
G GRTGK F + + PD + ++KGIT YLPLS +IY + K F H +
Sbjct: 258 GFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVN 317
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL-TSLITHPKIINFRQKGMIWA 365
++ GNP AC AL LEI +N+++R +Q + + + L L HP + + R KG++
Sbjct: 318 TFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVG 377
Query: 366 F----DVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------NTVYLMPPYILNK 411
D ++P + + VAA K + L+ IG N + L PP +++
Sbjct: 378 IELVNDKETKEPADNDKVAS--VVAACKEKGLI--IGKNGDTVAGYNNVLTLSPPLVISS 433
Query: 412 NEIQHMTSAIFQTFNEV 428
EI + + +
Sbjct: 434 EEIAFIVGTLKTALERI 450
|
Length = 451 |
| >gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 2e-61
Identities = 111/416 (26%), Positives = 209/416 (50%), Gaps = 27/416 (6%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
G+R LD + W GH I +A++ Q +L++ + H +L+ +++
Sbjct: 40 YTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIA 99
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+ L H F+ + G+ +V+ ALK++ Y +G ++ + I + YHG G ++V
Sbjct: 100 EIAPGGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVG 159
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINK-----------GNSANEIARCAIFDLEILLK 196
I ++ + +LL + P + ++ + A+E+ R ++
Sbjct: 160 GIVPNRKAFGALL--PGVDHLPHTLDLARNAFSKGQPEHGAELADELER-------LVTL 210
Query: 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+ + IAA+I+EP V + G+++ YL+ +REIC+ + I LI DE+ G GR G FA
Sbjct: 211 HDASTIAAVIVEP-VAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFA 269
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLAC 315
++ + PD L +KG+T G +P+ V + +I+++ I F H ++YSG+PLAC
Sbjct: 270 AQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLAC 329
Query: 316 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ 375
AALATL+++ ++ +L R ++ AL SL P +I+ R G++ A ++ P
Sbjct: 330 AAALATLDLYEREGLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVEL---APRD 386
Query: 376 IETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
+ + + F+ + L++R G+ + L PP I+ + +I + + Q E I
Sbjct: 387 GKPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLIIEEAQIDELFDILAQALKETI 442
|
Length = 442 |
| >gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 2e-60
Identities = 122/419 (29%), Positives = 213/419 (50%), Gaps = 35/419 (8%)
Query: 28 LIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
D G++ LD + W N GH I +A+ Q L++ + H +L+E+L
Sbjct: 43 YTDADGRKILDGTAGLWCCNA-GHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERL 101
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ L L H F+ + G+ +V+ ALK++ Y +G + + I + YHG G ++V
Sbjct: 102 AELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISV 161
Query: 147 TNIQSFKEIYTSLLN------KTYIITTPDSRN-INKGNSAN--EIARCAIFDLEILLKK 197
I + ++++ LL T + N +KG + E+A DLE L+
Sbjct: 162 GGIVNNRKMFGGLLPGVDHLPHTLDL----PENAFSKGQPEHGAELAD----DLERLVA- 212
Query: 198 NH--NKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
H + IAA+I+EP+ AG G+++ YL+ +REIC+ + I LI DE+ G GR G
Sbjct: 213 LHDASTIAAVIVEPM---AGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY--KNNINIFLHSHSYSGN 311
FA E + PD + +KG+T G +P+ V+ +D+IY++ + I F H ++YS +
Sbjct: 270 AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFF-HGYTYSAH 328
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 371
P+AC A LATL+I+ ++++ +R ++ A+ SL P +I+ R G++ ++
Sbjct: 329 PVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIEL--- 385
Query: 372 DPEQIETFSKKF--FVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
P ++ + F+ + LL+R G+T+ L PP I+ K +I + A+ V
Sbjct: 386 APRPGAPGARGYEAFMKCFEKGLLVRYTGDTIALSPPLIIEKAQIDELVDALGDALRAV 444
|
Length = 445 |
| >gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 1e-59
Identities = 119/416 (28%), Positives = 200/416 (48%), Gaps = 22/416 (5%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
+ D GKRYLD ++ +V GH + + +A Q L L + H P I+L+E+L+
Sbjct: 46 IWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLA 105
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+L L F+ + G+ AVE A K++ Y+ G K K I +YHG T GALA+T
Sbjct: 106 ALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAIT 165
Query: 148 NIQSFKEIYTSLLNKTY-IITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 205
+ +FK + L+ + + T R G+ R A +E + + + +AA+
Sbjct: 166 GLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAV 225
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
+EP VQ AGG Y + VREIC+ Y++ L++DE+ GR G+ F CE PD
Sbjct: 226 FLEP-VQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPD 284
Query: 266 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325
+ +KGIT GY PL ++ +D+++ + +FLH +++ G+P++ ALA L+IF
Sbjct: 285 IITCAKGITSGYSPLGAMIASDRLFEPFL--DGPTMFLHGYTFGGHPVSAAVALANLDIF 342
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE-------DPEQIET 378
++ +L + + L L+ P + + R G + +++ + ++ E
Sbjct: 343 EREGLLDHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESER 402
Query: 379 FSKKFFVAAL-KNELLLR------PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ F AL + L R P+ V L PP I + E + + E
Sbjct: 403 LLRGFLSPALFEAGLYCRADDRGDPV---VQLAPPLISGQEEFDEIEQILRSVLTE 455
|
Length = 460 |
| >gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 2e-59
Identities = 119/413 (28%), Positives = 205/413 (49%), Gaps = 20/413 (4%)
Query: 30 DVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVM-LSNLTHKPVIKLSEKLS 87
D G+RYLD I W VN+ G+ + A+ +Q +L + ++T+ P +L+ KL+
Sbjct: 47 DADGRRYLDGIGGMWCVNV-GYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLA 105
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
L L H F + G++AV+ AL+ +Y+ +G KK I ++YHG T ++T
Sbjct: 106 ELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLT 165
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI----FDLEILLKKNHNKIA 203
+ + + + + +++P+ G S E A C F+ +IL + IA
Sbjct: 166 GKAADRTEFDYASDLVHHLSSPNPYRRPAGMS--EAAFCDFLVDEFEDKIL-SLGADNIA 222
Query: 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE-HAEI 262
A I EP + +GG+I+ Y +REIC Y+I I+DE+ G GR G FFA E I
Sbjct: 223 AFIAEP-ILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI 281
Query: 263 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNI-NIFLHSHSYSGNPLACCAALAT 321
PD + +KG+T GY PL V+ ++++ + I N N+F H +YSG+P+AC AAL
Sbjct: 282 QPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKN 341
Query: 322 LEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED------PEQ 375
+EI ++ + + + + + L SL P + + R ++ + + + PE
Sbjct: 342 IEIMEREGLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPED 401
Query: 376 IETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
I ++ + LL+RP+ + L PP I+ + +I + + + E
Sbjct: 402 I-AIGQRIDRHCQERGLLVRPLEHLCVLSPPLIITRAQIDEIVAILRAAIEET 453
|
Length = 466 |
| >gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 1e-58
Identities = 126/411 (30%), Positives = 210/411 (51%), Gaps = 44/411 (10%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL---EHVMLSNLTHKPVIKLSE 84
L+D G+ ++D + + + GH N + A++NQL K +L L L++
Sbjct: 76 LVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAM----LAK 131
Query: 85 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 144
L++LT KL + F+ + G +VE ALK++ Y +G K FI ++HG++LGAL
Sbjct: 132 TLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIATSGAFHGKSLGAL 188
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204
+ T +F++ + LL P R++ GN E R A+ + KK + +AA
Sbjct: 189 SATAKSTFRKPFMPLL--------PGFRHVPFGNI--EAMRTALSEC----KKTGDDVAA 234
Query: 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
+I+EP +Q GG+I+ YL VR++C+ + LI DE+ G GRTGK FACEH + P
Sbjct: 235 VILEP-IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQP 293
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324
D LCL+K + GG +P+ + T+++++ ++ N FLH+ ++ GNPLAC AALAT+ +
Sbjct: 294 DILCLAKALGGGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATINV 349
Query: 325 FNKDNILQRISQDMKKITKALTSLI-THPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKK 382
+ N+ + Q + L +P ++ R KGM+ A + + D E F+ +
Sbjct: 350 LLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFV--DNEIGYNFASE 407
Query: 383 FF-----VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
F VA N T+ + PP L + + + A + +
Sbjct: 408 MFRQRVLVAGTLNN------AKTIRIEPPLTLTIEQCEQVLKAARKALAAM 452
|
Length = 459 |
| >gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 6e-58
Identities = 118/431 (27%), Positives = 204/431 (47%), Gaps = 45/431 (10%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
LVI + W + DV G YLD + V GH++ + KA+K Q K H L++
Sbjct: 38 LVIERGEGVW---VEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDF 94
Query: 75 THKPVIKLSEKLSSLT----QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130
++P ++L+E+L + + K+ F+ + G + E A+K++ + +K I
Sbjct: 95 YYEPAVELAERLVEIAPGGFEKKV---FFTNSGTESNEAAIKIA------RYHTGRKYII 145
Query: 131 CLQNSYHGETLGALAVTNIQSFKEIYTS----LLNKTYIITTPDS-RNINKGNSANEIAR 185
++HG T G+L++T + K + L+ + P+ RN + E
Sbjct: 146 AFLGAFHGRTYGSLSLT---ASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGN 202
Query: 186 CAIFDLE-ILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242
+ +E L KK ++AAII+EP +Q GG ++ + K +R++ + Y I LI D
Sbjct: 203 AVLDFIEDYLFKKLVPPEEVAAIIVEP-IQGEGGYVVPPKNFFKELRKLADKYGILLIDD 261
Query: 243 EIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 302
E+ G GRTGK FA EH + PD + L+K I GG LPL V+ + +
Sbjct: 262 EVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVI----------GRAELMFL 310
Query: 303 ---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFR 358
H++++ GNP+A AALATLE ++ +L+ + + + K L L + I + R
Sbjct: 311 PPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLRKELKELKEKYEFIGDVR 369
Query: 359 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHM 417
G++ +++ + E K A K LLL G + + ++PP I+ + E
Sbjct: 370 GLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIG 429
Query: 418 TSAIFQTFNEV 428
+ + E+
Sbjct: 430 LEILEEAIKEL 440
|
Length = 441 |
| >gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 1e-57
Identities = 105/395 (26%), Positives = 183/395 (46%), Gaps = 48/395 (12%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKLSS 88
DV GK YLD + VN GH++ + +A+ QL L HV SNL +P I L+E+L
Sbjct: 39 DVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHV--SNLFATEPQIALAERLVE 96
Query: 89 LTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
L + G F+ + GA A E A K++ + K + + +HG T+GALA+T
Sbjct: 97 LLGAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALT 149
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207
+ + + L ++ G D++ L + AA+ +
Sbjct: 150 GQPAKRAPFEPLP--------GGVEHVPYG------------DVDALAAAVDDDTAAVFL 189
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
EP +Q G++ + YL REI + + L+ DE+ G GRTG +FA +H + PD +
Sbjct: 190 EP-IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV 248
Query: 268 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327
L+KG+ GG LP+ + + LH ++ GNP+AC AALA L+
Sbjct: 249 TLAKGLGGG-LPIGACLAFGP-AADLLTPG-----LHGSTFGGNPVACAAALAVLDTIAS 301
Query: 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 387
+ +L+ + +++ + +L HP + + R +G++ + + +E AA
Sbjct: 302 EGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEA-------AA 353
Query: 388 LKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421
+ L+ + + + L PP I+ ++ +A+
Sbjct: 354 REAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAAL 388
|
Length = 398 |
| >gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 2e-56
Identities = 116/419 (27%), Positives = 180/419 (42%), Gaps = 44/419 (10%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT 75
V++ K + W DV GK+Y D +S++ GH + I AL NQ KL S
Sbjct: 16 VLKRGKGVFVW---DVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTL--TSRAF 70
Query: 76 HKPVIKLSEK-LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICL 132
+ V+ L+EK ++ L Y + GA A E ALK + + Y + N+ K I
Sbjct: 71 YNDVLGLAEKYITDLFGYD--KVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFC 128
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
++ G T+GA + + + + ++ D + LE
Sbjct: 129 NGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYND-----------------VEALE 171
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
LL+ +AA I+EP +Q G+I+ D YLK V E+C YN+ LI DEI G GRTG
Sbjct: 172 KLLQDP--NVAAFIVEP-IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG 228
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
K A +H + PD + L K ++GG P+S V+ D + I H +Y GNP
Sbjct: 229 KLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLV------IKPGEHGSTYGGNP 282
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIE 371
LAC A+ LE+ ++ + + + + L L+ + R KG++ A
Sbjct: 283 LACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVF--- 339
Query: 372 DPEQIETFSKKFFVAALK-NELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
D LK N LL +P N + PP ++ K ++ I +
Sbjct: 340 DHSDGVNAWD--LCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQALEIIKKVLKSF 396
|
Length = 400 |
| >gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 2e-56
Identities = 121/394 (30%), Positives = 201/394 (51%), Gaps = 38/394 (9%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
+LID G ++D + + + GH N + A++NQL K + + L L++ L
Sbjct: 68 TLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAK-QPLHSQELLDPLRALLAKTL 126
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++LT KL + F+ + G +VE ALK++ Y +G K FI ++HG++LGAL+
Sbjct: 127 AALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRG---KFTFIAASGAFHGKSLGALSA 183
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA---NEIARCAIFDLEILLKKNHNKIA 203
T +F++ + LL P ++ G+ + C KK + +A
Sbjct: 184 TAKPAFRKPFMPLL--------PGFHHVAFGDIEAMLKALNEC---------KKTGDDVA 226
Query: 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
AII+EP +Q GG+I+ YL VR +C+ + LI DE+ G GRTGK FACEH +
Sbjct: 227 AIILEP-IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQ 285
Query: 264 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323
PD LCL+K + GG +P+ + T+ +++ ++ N FLH+ ++ GNPLAC AALAT+
Sbjct: 286 PDILCLAKALGGGVMPIGATIATEAVFSVLFD----NPFLHTTTFGGNPLACAAALATIN 341
Query: 324 IFNKDNILQRISQDMKKITKALTSLIT-HPK-IINFRQKGMIWAFDVIIEDPEQIETFSK 381
+ N+ + + + L +P II R KG++ A + D E F+K
Sbjct: 342 ELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFR--DNEIGYAFAK 399
Query: 382 KFFVAALKNELLLRPIGN--TVYLMPPYILNKNE 413
+ F +N L+ + N ++ + PP + +
Sbjct: 400 ELF---QQNILVAGTLNNAKSIRIEPPLTITIEQ 430
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442 |
| >gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-55
Identities = 111/421 (26%), Positives = 204/421 (48%), Gaps = 33/421 (7%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT 75
V+ S + + + DV GK+Y+D V+ G+ + ++ + +K Q+ KL T
Sbjct: 57 VLASAEGIY---IEDVDGKKYMD-FHGNNVHQLGYGHPHVIEKVKEQMAKLP-FSPRRFT 111
Query: 76 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS 135
++ I+ +EKL+ + +L + G SA+ +ALK++ H K + L +S
Sbjct: 112 NETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHI------TGNFKVVSLWDS 165
Query: 136 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL 195
+HG +L A++V F++ L+ I S ++ A + LE ++
Sbjct: 166 FHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADY-LEYVI 224
Query: 196 KKNHNKIAAIIIEPL----VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
+K I A I E + VQ Y K VREIC+ +N+ LI DEI G GRT
Sbjct: 225 EK-EGGIGAFIAEAVRNTDVQVP------SKAYWKRVREICDKHNVLLIIDEIPNGMGRT 277
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 311
G++F + I PD LC+ KG+ GG +P++ ++T DK Y I L +++ +
Sbjct: 278 GEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDK------YNTAAQISLGHYTHEKS 331
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVII 370
PL C AALAT+E+ ++ +L+++ D + + + L + +P I + R G++W +++
Sbjct: 332 PLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVT 391
Query: 371 EDPEQIETF--SKKFFVAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ + + ++ L N L + GN + L PP I+ + E+ + + + +
Sbjct: 392 DRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIAK 451
Query: 428 V 428
+
Sbjct: 452 I 452
|
Length = 459 |
| >gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 4e-54
Identities = 121/418 (28%), Positives = 213/418 (50%), Gaps = 20/418 (4%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSN 73
LVI + S+ + D++GK+YLDA++ W G S + A QLNKL + N
Sbjct: 73 LVIEKSEGSYVY---DINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWN 129
Query: 74 LTHKPVIKLSEKLSSL-TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
T KP + L+++L + T K+G F+ + G+ A + +K+ ++Y G NKKKFI
Sbjct: 130 RTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAR 189
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDS-RNINKGNSANEIARCAIF 189
SYHG TL + +++ + + + + L +++ T P R G + E +
Sbjct: 190 SKSYHGSTLISASLSGLPALHQKFD--LPAPFVLHTDCPHYWRFHLPGETEEEFSTRLAD 247
Query: 190 DLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+LE ++LK+ IAA I EP V AGG+I + Y + ++ + Y+I IADE+
Sbjct: 248 NLENLILKEGPETIAAFIAEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAF 306
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHS 307
GR G F C+ I PD + L+K ++ Y+P+ V+ + +I + I+ N + F H +
Sbjct: 307 GRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFT 366
Query: 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 367
YSG+P++C AL L+I+ + NI + +++ + + + P I R G+I +
Sbjct: 367 YSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTE 426
Query: 368 VIIEDPEQIETFSKKFFVAAL------KNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+++ + F ++ V A K +L+R G+ + + PP I+ E+ + S
Sbjct: 427 -FVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDNIMMSPPLIITPEEVDELIS 483
|
Length = 504 |
| >gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-50
Identities = 121/425 (28%), Positives = 196/425 (46%), Gaps = 35/425 (8%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKL 86
L D GKRYLD +S W G+ + A Q+ +L + M + TH VI+LSE L
Sbjct: 48 LWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELL 107
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
SL H Y + G+ A EV ++ YW G KK I N YHG TL A A+
Sbjct: 108 FSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATAL 167
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNI-------NKGN-SANEIA-RCAIFDLEILLKK 197
++ E+ + PD +I N G + E R A+ E +L+
Sbjct: 168 GGMKFMHEMGGLI---------PDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL 218
Query: 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
+A + EP Q AGGMI Y ++ IC Y++ L ADE+ G GRTG++FA
Sbjct: 219 GAENVAGFVAEPF-QGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAH 277
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317
EH PD L ++KG+T GY+P+ ++ + +I ++ + +F H +YSG+P+A
Sbjct: 278 EHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQG--GVFAHGLTYSGHPVAAAV 335
Query: 318 ALATLEIFNKDNILQRISQDMKK-ITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQ 375
A+A L+ + ++ R+ D + + L + HP + + G++ A ED
Sbjct: 336 AIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQ-FAEDKAT 394
Query: 376 IETFSKKFFVA------ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS----AIFQTF 425
+ F+ + +A + +++R + + P + + EI + A+ +T
Sbjct: 395 RKRFANENDLAWRCRTIGFEEGVIIRSTLGRMIMAPALVAGRAEIDELVDKTRIAVDRTA 454
Query: 426 NEVIT 430
EV
Sbjct: 455 REVGV 459
|
Length = 460 |
| >gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 4e-50
Identities = 121/433 (27%), Positives = 201/433 (46%), Gaps = 64/433 (14%)
Query: 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNL-FGHSNSYINKALKNQLNKLEHV-- 69
N +VI + S+ W D G+RYLD SS VN GH + + A++ Q +L V
Sbjct: 35 NPMVIAGAEGSYVW---DYEGRRYLD-FSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP 90
Query: 70 MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
+N + + ++ L F+ + GA A E A++M+ + + K
Sbjct: 91 AHANDARS---EAARLIAERAPGDLSKVFFTNGGADANEHAVRMA------RLHTGRPKV 141
Query: 130 ICLQNSYHGETLGALAVT-------------NIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ SYHG T A+ +T + F + L + TT
Sbjct: 142 LSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPF--LYRSEFHATTE------- 192
Query: 177 GNSANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235
E R A+ LE ++ + + IAAI++E + AG +++ YL VRE+C+ +
Sbjct: 193 ---EEECER-ALAHLERVIELEGPSTIAAILLESVPGTAG-ILVPPPGYLAGVRELCDRH 247
Query: 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY 295
I LIADE+ G GRTGK+FA EH + PD + +KG+ GY+PL V ++ I +
Sbjct: 248 GIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD 307
Query: 296 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLIT-H 351
+ + +YSG+PLAC AA+AT+ ++ I++ RI ++ + L L H
Sbjct: 308 R----PYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEV--LGPGLRELAERH 361
Query: 352 PKIINFRQKGMIWAFDVIIEDPEQIETFSKKF--------FVAALKNELLLRPI-GNTVY 402
P + R G+ WA + ++ D E E + AA K LL + GN ++
Sbjct: 362 PSVGEVRGLGVFWALE-LVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNGNRIH 420
Query: 403 LMPPYILNKNEIQ 415
++PP + ++E++
Sbjct: 421 VVPPCTVTEDEVR 433
|
Length = 451 |
| >gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 7e-50
Identities = 119/431 (27%), Positives = 206/431 (47%), Gaps = 29/431 (6%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWW-VNL-FGHSNSYINKALKNQLNKLEHVM-LS 72
V+ S K + L D SG + LDA + W VN+ +G + I +A Q+ +L +
Sbjct: 31 VLASAKGAT---LTDASGHQLLDAFAGLWCVNVGYGQES--IVEAAAEQMRELPYATGYF 85
Query: 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
+ +P I+L+ KL+ L H ++ G+ AV+ A++ HYW G +KK+FI L
Sbjct: 86 HFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISL 145
Query: 133 QNSYHGE-TLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFD 190
+ YHG ++GA +T + +F + L + I +P RN + IA
Sbjct: 146 ERGYHGSSSVGA-GLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAA----S 200
Query: 191 LEILLKK----NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ L K + +AA EP +Q +GG+I+ +LK +RE C I +ADE+
Sbjct: 201 VAALRAKVAELGADNVAAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVIT 259
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-HS 305
G GRTG FACE + PD + ++KG+T GY+P+ V+ +D +Y I + H
Sbjct: 260 GFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHG 319
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
++YS +P++ L L ++++ +L + + L +L HP + + R +G++ A
Sbjct: 320 YTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGA 379
Query: 366 FDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVY-LMPPYILNKNEIQHMT 418
+++ D F + + F A N L+ R G+ V P + E +
Sbjct: 380 LELVA-DKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIF 438
Query: 419 SAIFQTFNEVI 429
+T ++V+
Sbjct: 439 ERTRKTLDDVL 449
|
Length = 459 |
| >gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-47
Identities = 112/408 (27%), Positives = 188/408 (46%), Gaps = 50/408 (12%)
Query: 30 DVSGKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88
DV GKRYLD +S++ VN GH + I KAL Q LT ++
Sbjct: 33 DVEGKRYLDFLSAYSAVNQ-GHCHPKIVKALTEQA--------QKLTLSSRAFYNDVFGE 83
Query: 89 LTQYKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYHGE 139
+Y +G D GA AVE A+K++ + Y + N+ + + ++HG
Sbjct: 84 FAEYV--TKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGR 141
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
TLGA++++ + + + P + I N LE L+ +
Sbjct: 142 TLGAISMSTDPDSRTNFGPYV--------PGFKKIPYNNLE---------ALEEALEDHG 184
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+ A I+EP +Q G+++ D YLK VRE+C +N+ LIADEI G GRTGK +H
Sbjct: 185 PNVCAFIVEP-IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDH 243
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 319
+ PD + L K ++GG P+S V+ D + +I H +Y GNPLAC A+
Sbjct: 244 ENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGE------HGSTYGGNPLACAVAV 297
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379
A LE+ ++ + + ++ + +I + + P I R +G++ A I+ D +
Sbjct: 298 AALEVLEEEKLAEN-AEKLGEIFRDQLKKLPKPIITEVRGRGLLNA---IVIDESKTGRT 353
Query: 380 SKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + + LL +P GN + L PP ++ + ++ I + +
Sbjct: 354 AWDLCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401 |
| >gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 5e-46
Identities = 117/412 (28%), Positives = 192/412 (46%), Gaps = 54/412 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK-PVIKLSEKL 86
L DV GK YLD + VN GH + KA+ Q L HV SN+ H P ++L+++L
Sbjct: 9 LYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHV--SNVYHTIPQVELAKRL 66
Query: 87 --SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK-------FICLQNSYH 137
SS F+ + G A E A+K + Y + K F+ NS+H
Sbjct: 67 VASSFAD----RVFFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFH 122
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G TLGALA+T+ + ++ + L+ P + GN E AR I
Sbjct: 123 GRTLGALALTSKEQYRTPFEPLM--------PGVTFVEYGNL--EAARKLI--------- 163
Query: 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
K AA+ +EP VQ GG+ +L+ +R +C+ L+ DE+ G GRTG +A
Sbjct: 164 QKGKTAAVFVEP-VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAH 222
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317
E + PD + L+K + GG LP+ V+ T+K+ ++I + H +++G PL C A
Sbjct: 223 EAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGD------HGSTFAGGPLVCNA 275
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQI 376
ALA L+ +K L +++ + + + L L +P + R G++ V I Q+
Sbjct: 276 ALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLL----VGI----QL 327
Query: 377 ETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + A + LL+ G+ V L+PP ++++ E++ +
Sbjct: 328 DVPAGPLVDACRDSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLP 379
|
Length = 382 |
| >gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 164 bits (416), Expect = 5e-46
Identities = 112/426 (26%), Positives = 194/426 (45%), Gaps = 35/426 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
LV +N+ W D+ G Y+D +S V GH+N + KA+K Q +KL H
Sbjct: 25 LVPVKAENAKVW---DIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYG 81
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+ L+EKL + +G G+ A + A+K + + + ++K +
Sbjct: 82 FPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFA------RAYTKRRKILSYLR 135
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
SY+G T GA+++T + L+ + I PD G C + +E +
Sbjct: 136 SYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGS---CKMECVEYI 192
Query: 195 LKKNHNKI-----AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
+K ++ AA+ EP +Q GMI+ Y K +++I + + I L+ DE+ G G
Sbjct: 193 KEKFEGEVYAEGVAALFAEP-IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLG 251
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTGK+FA EH + PD + L K + GG LP+S + +I +S + H+ + S
Sbjct: 252 RTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDS------LPPLAHAFTLS 304
Query: 310 GNPLACCAALATLEIFNKDNILQRISQ----DMKKITKALTSLITHPKIINFRQKGMIWA 365
GNP+A AALA +E + N+L+R + K++ + H I + R G++
Sbjct: 305 GNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKK---HELIGDVRGIGLMIG 361
Query: 366 FDVII--EDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 422
D++ E E+ + K A + L++ GN + + PP + K + +
Sbjct: 362 VDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILE 421
Query: 423 QTFNEV 428
+ +V
Sbjct: 422 EAIEDV 427
|
Length = 443 |
| >gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 2e-45
Identities = 113/433 (26%), Positives = 189/433 (43%), Gaps = 36/433 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ W DV GK YLD ++ GH++ + + + + L + +L
Sbjct: 23 TAFAKAQGCWVT---DVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDL 79
Query: 75 THKPVIKLSEKLSS-LTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131
T E L + + + K+ + F G GA AVE A+K++ K + + I
Sbjct: 80 TTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLA------KTYTGRTNVIS 133
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191
+HG T+GALAVT K L+ + P G + +I
Sbjct: 134 FSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYF 193
Query: 192 EILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
E ++ + K AA+I+E +Q GG++ S +L+ +RE+ ++I LI DE+ G
Sbjct: 194 ENFIEDVESGVDKPAAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGF 252
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308
GR+G FA EHA I PDF+ +SK + GG LPL+ V+ +++ H+ ++
Sbjct: 253 GRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLA-VLLIAPEFDAWQPAG------HTGTF 304
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFD 367
GN LA L + DN+ Q + ++IT L +I HP I N R +G++
Sbjct: 305 RGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIM 364
Query: 368 VIIED--PEQIETFSKKFFVAA------LKNELLLRPIG---NTVYLMPPYILNKNEIQH 416
++ E + + + +AA +N LLL G L+ P +++ E +
Sbjct: 365 IVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEE 424
Query: 417 MTSAIFQTFNEVI 429
S Q E +
Sbjct: 425 GISRFKQAVEEAL 437
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442 |
| >gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-43
Identities = 113/403 (28%), Positives = 178/403 (44%), Gaps = 54/403 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV G R +D S V GHS+ + A++ Q+ + H ++ + L+EKL+
Sbjct: 27 LEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLN 86
Query: 88 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
+ F+ S GA AVE A+K++ + + + + + +HG T +A
Sbjct: 87 RIAPGSGPKKSVFFNS-GAEAVENAVKIA------RSYTGRPGVVAFDHGFHGRTNMTMA 139
Query: 146 VT-NIQSFK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
+T + +K E+Y + L Y D + G A + D+
Sbjct: 140 LTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELA-AARAIFVIDVGA--- 195
Query: 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
N +AA++IEP VQ GG I+ ++ + + C + I IADE+ G RTG FA
Sbjct: 196 ---NNVAALVIEP-VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFA 251
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH------SYSG 310
CEH PD + +K + G LPLS V I +Y+G
Sbjct: 252 CEHEGPEPDLITTAKSLADG-LPLSGVT------------GRAEIMDAPAPGGLGGTYAG 298
Query: 311 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVI 369
NPLAC AALA L I + +++R Q + +T LT+L P+I + R G + A +++
Sbjct: 299 NPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV 358
Query: 370 IEDPEQIE---TFSKKFFVAALKNELLLRPI---GNTVYLMPP 406
DP E +++ AA LLL GN + +PP
Sbjct: 359 --DPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPP 399
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420 |
| >gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-43
Identities = 108/425 (25%), Positives = 192/425 (45%), Gaps = 67/425 (15%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT 75
V K S L D GK Y+D + +GH+N + +AL ++++ +
Sbjct: 20 VFEKAKGST---LWDEDGKEYIDFFAGAGALNYGHNNPKLKQAL------IDYLADDGII 70
Query: 76 HKPVIKLSEK---LSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 123
H + K L + + YK+ F G G +AVE ALK++ +
Sbjct: 71 HSLDMATEAKREFLETFNEIILKPRGLDYKVQ--FPGPTGTNAVESALKLA------RKV 122
Query: 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183
+ + N++HG TLG+L+VT + ++ L+ P +
Sbjct: 123 TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNV--SRMPYDGYLGGDVDTIAY 180
Query: 184 ARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLI 240
E LL+ + + AA+I+E VQ GG+ + +L+ + ++C ++I LI
Sbjct: 181 -------FEKLLEDSSSGVDLPAAVILET-VQGEGGINVASDEWLQRLEKLCRRHDILLI 232
Query: 241 ADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNIN 300
D+I GCGRTG FF+ E A I PD +CLSK I+G LPL+L + K ++
Sbjct: 233 VDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTL----------IKPELD 282
Query: 301 IFL---HSHSYSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKALTSLI-THPKII 355
++ H+ ++ GN LA A A LE + D+ ++ + + + I + L ++ +P++I
Sbjct: 283 VWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELI 342
Query: 356 -NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNK 411
R +G++ + D + K AA +N L++ P + L+PP +++
Sbjct: 343 KQVRGRGLMQGIECGDGD------LAGKIAKAAFENGLIIETSGPNDEVIKLLPPLTIDE 396
Query: 412 NEIQH 416
+Q
Sbjct: 397 ETLQQ 401
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412 |
| >gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-42
Identities = 111/401 (27%), Positives = 195/401 (48%), Gaps = 61/401 (15%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
D G+RYLD I+ VN+ GH++ + + QL KL V H+ ++ E+LS
Sbjct: 20 DSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPMFEHEEKEEMLEELSKW 78
Query: 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149
Y+ + + G+ G AVE ALK + + + +K+ I + N++HG T+GAL+ T
Sbjct: 79 VNYE--YVYMGNSGTEAVEAALK------FARLYTGRKEIIAMTNAFHGRTMGALSATWK 130
Query: 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209
++E + L+ P ++I + E A+ AI + AA+I EP
Sbjct: 131 PKYREDFEPLV--------PGFKHIPFNDV--EAAKEAI----------TKETAAVIFEP 170
Query: 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269
+Q GG++ ++K +R++ + LIADE+ G RTGKF A EH ++ PD + +
Sbjct: 171 -IQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTM 228
Query: 270 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329
KGI G +P+SL +T + H ++ GNPLAC A TL I ++
Sbjct: 229 GKGIGNG-VPVSLTLTNFDVERG----------KHGSTFGGNPLACKAVAVTLRILRRER 277
Query: 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 389
++++ + +I +++ R +G++ ++++ P +V L+
Sbjct: 278 LVEKAGEKFIEIKGE--------RVVTTRGRGLM--IGIVLKKP-------VGKYVEELQ 320
Query: 390 NE-LLLRPIGNTVY-LMPPYILNKNEIQHMTSAIFQTFNEV 428
N L+ G V L+PP I++K+ ++ SAI N++
Sbjct: 321 NRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361
|
Length = 364 |
| >gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 1e-41
Identities = 105/396 (26%), Positives = 178/396 (44%), Gaps = 53/396 (13%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSEKLSS 88
D GK Y+D V GH + + KALK Q KL H +SN T++P ++L++KL
Sbjct: 36 DQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWH--ISNVFTNEPALRLAKKLID 93
Query: 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 148
T + F+ + GA A E A K++ Y ++ K + I NS+HG TL ++V
Sbjct: 94 ATFAE--RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGG 151
Query: 149 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208
+ + + G +I DL + + A+++E
Sbjct: 152 QPKYSDGF--------------------GPKPADITHVPFNDLAAVKAVIDDHTCAVVVE 191
Query: 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 268
P+ Q GG+I +L+ +RE+C+ +N LI DE+ G GRTG FA H + PD L
Sbjct: 192 PI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILT 250
Query: 269 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328
+K + GG+ P+ ++TT +I + + H +Y GNPLAC A A +I N
Sbjct: 251 SAKALGGGF-PIGAMLTTAEIASH------FKVGTHGSTYGGNPLACAVAEAVFDIINTP 303
Query: 329 NILQRISQDMKKITKALTSLITHPKIIN--------FRQKGMIWAFDVIIEDPEQIETFS 380
+L+ + ++ L + IN R G++ + E Q + +
Sbjct: 304 EVLEGVKARRQRFVDGL-------QKINQKYGVFSEIRGMGLL----IGAELKPQYKGRA 352
Query: 381 KKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 415
+ F AA + +++ G + + P ++ + +I
Sbjct: 353 RDFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADID 388
|
Length = 403 |
| >gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 114/424 (26%), Positives = 195/424 (45%), Gaps = 61/424 (14%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV 79
K S W D GK+YLD +S++ VN GH + I KAL Q KL + S +
Sbjct: 65 KGSRIW---DPEGKKYLDFLSAYSAVNQ-GHCHPKIIKALTEQAEKL--TLSSRAFYNDK 118
Query: 80 IKLSEKLSSLTQYKLGHCFYGSD-------GASAVEVALKMSFHYWYNKGFL--NKKKFI 130
+ LT +G D GA VE A+K++ + Y K + N+ +
Sbjct: 119 FPEFAEY--LTSM------FGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIV 170
Query: 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190
+HG TL A++++ + LL P ++ G+ +
Sbjct: 171 SCCGCFHGRTLAAISMSCDNEATRGFGPLL--------PGHLKVDFGD---------LDA 213
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250
LE + +++ ++IAA + EP +Q G+++ YLK VRE+C+ +N+ +IADEI G R
Sbjct: 214 LEKIFEEDGDRIAAFLFEP-IQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLAR 272
Query: 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG 310
TGK AC+ E+ PD + L K + GG +P+S V+ + I H ++ G
Sbjct: 273 TGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGE------HGSTFGG 326
Query: 311 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPKII-NFRQKGMIWAFD 367
NPLA A+A L++ + + +R S + + + I PK+I R +G+ +
Sbjct: 327 NPLASAVAMAALQVVQDEKLAER-SAKLGQELRDQLQKIQKQFPKLIKEVRGRGL---LN 382
Query: 368 VIIEDPEQIETFSKKFFVAALK-NELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTF 425
++ + ++ S LK LL +P + L PP ++++E+Q + A
Sbjct: 383 AVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKA----L 438
Query: 426 NEVI 429
++V+
Sbjct: 439 SDVL 442
|
Length = 474 |
| >gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-41
Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 33/320 (10%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSEKLSS 88
D GK Y+D VN GH++ + KAL Q +KL H + N T++PV++L++KL
Sbjct: 31 DQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWH--IGNGYTNEPVLRLAKKLVD 88
Query: 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 148
T F+ + GA A E ALK++ Y +K +K + + +NS+HG TL ++V
Sbjct: 89 ATFAD--KVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGG 146
Query: 149 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208
+ + + L I DL +K A+I+E
Sbjct: 147 QPKYSQGFAPL--------------------PGGIKHAPYNDLAAAKALISDKTCAVIVE 186
Query: 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 268
P +Q GG++ D +LK +RE+C+ +N LI DE+ G GRTG+ +A H + PD L
Sbjct: 187 P-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILT 245
Query: 269 LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328
+K + GG+ P+ ++TT + ++ + H +Y GNPLAC A L++ N
Sbjct: 246 SAKALGGGF-PIGAMLTTTE------IAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTP 298
Query: 329 NILQRISQDMKKITKALTSL 348
+L + Q L +
Sbjct: 299 ELLAGVKQRHDLFVDGLEKI 318
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397 |
| >gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 118/434 (27%), Positives = 195/434 (44%), Gaps = 66/434 (15%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+N W DV G+ YLD V GH + + A++ QL KL H L ++P +
Sbjct: 31 ENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYL 87
Query: 81 KLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L EK++ + G+ AVE A+K++ G I +YHG
Sbjct: 88 ELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGV------IAFTGAYHGR 141
Query: 140 TLGALAVT---------------NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184
T LA+T ++ ++ +Y L+ +++ ++ I
Sbjct: 142 THYTLALTGKVNPYSAGMGLMPGHV--YRALYPCPLH-----------GVSEDDAIASIE 188
Query: 185 RCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241
R IF KN IAAIIIEP VQ GG +++ +R +C+ + I LIA
Sbjct: 189 R--IF-------KNDAAPEDIAAIIIEP-VQGEGGFYAASPAFMQRLRALCDEHGIMLIA 238
Query: 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI 301
DE+ G GRTG FA E + D +K I GG+ PL+ V ++ ++I
Sbjct: 239 DEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGF-PLAGVTGRAEVMDAIAPGG---- 293
Query: 302 FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQK 360
+Y+GNP+AC AALA L++F ++N+LQ+ + +K+ L ++ HP+I + R
Sbjct: 294 --LGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRGL 351
Query: 361 GMIWAFDVIIEDPEQIE---TFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEI 414
G + A + + ED + + + + A L+L P N + ++ P + +I
Sbjct: 352 GAMIAIE-LFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQI 410
Query: 415 QHMTSAIFQTFNEV 428
+ I Q F+E
Sbjct: 411 RQGLEIIAQCFDEA 424
|
Length = 425 |
| >gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 57/397 (14%)
Query: 26 WSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSE 84
+ D +GK YLD S V GH + + KA++ QL+ + HV SNL + +++
Sbjct: 21 TKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV--SNLFTNSLQEEVAS 78
Query: 85 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 144
L+ + L F+ + GA A E ALK++ + G K K + + S+HG T G +
Sbjct: 79 LLAENSAGDL--VFFCNSGAEANEAALKLARKH---TG---KSKIVTFEQSFHGRTFGTM 130
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204
+ T + KE + LL P N D++ L + + ++AA
Sbjct: 131 SATGQEKIKEGFGPLLPG--FTHVP----FN--------------DIKALKEVMNEEVAA 170
Query: 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
+++E VQ GG+I D +L+ V+ +C + LI DE+ G GRTG FA E + P
Sbjct: 171 VMLEV-VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDP 229
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF---LHSHSYSGNPLACCAALAT 321
D + ++KG+ G +P+ + I K F H ++ GNPLA AA
Sbjct: 230 DIVTVAKGLGNG-IPVGAM---------IGKKELGTAFGPGSHGSTFGGNPLAMAAAKEV 279
Query: 322 LEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQIETFS 380
L++ + + L+ + + + + L + H + N R KG++ + IE E++
Sbjct: 280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLM----IGIECTEEVAP-- 333
Query: 381 KKFFVAALKNE-LLLRPIG-NTVYLMPPYILNKNEIQ 415
+ L+ E LL+ G N + L+PP ++ K E+
Sbjct: 334 ---VIEQLREEGLLVLSAGPNVIRLLPPLVVTKEELD 367
|
Length = 377 |
| >gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 2e-39
Identities = 122/451 (27%), Positives = 200/451 (44%), Gaps = 101/451 (22%)
Query: 21 KNSWKWSLIDVSGKRYLD----AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH 76
K SW L D GK Y+D A + +N +GH+N + +AL ++++ +TH
Sbjct: 29 KGSW---LYDEDGKEYIDFFAGAGA---LN-YGHNNPVLKQAL------IDYLQRDGITH 75
Query: 77 --------KPVIKLSEKLSSLTQ---------YKLGHCFYGSDGASAVEVALKMSFHYWY 119
K E L + + YK+ F G G +AVE ALK++
Sbjct: 76 GLDMHTTAK-----REFLETFEETILKPRGLDYKVQ--FTGPTGTNAVEAALKLARKV-- 126
Query: 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSF-KEIYTSLLNKT------YIITTPDSR 172
G + + N +HG TLG+LAVT + L N T Y
Sbjct: 127 -TG---RTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYF------- 175
Query: 173 NINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 229
G + +A LE LL+ + + AA+I+E VQ GG+ + + +L+ +
Sbjct: 176 ----GGDVDTLA-----YLEKLLEDSSSGVDLPAAVIVET-VQGEGGINVASAEWLQRLA 225
Query: 230 EICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-LPLSLVMTTDK 288
++C ++I LI D+I GCGRTG FF+ E A I PD + LSK I GY LP++LV+
Sbjct: 226 KLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSI-SGYGLPMALVL---- 280
Query: 289 IYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQR-ISQDMKKITKA 344
K ++++ H+ ++ GN LA A A LE + D+ ++ + + + +
Sbjct: 281 ------IKPELDVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRER 334
Query: 345 LTSLI-THPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGN 399
L + +P R +GM+ D D E + K A +N L++ P
Sbjct: 335 LEEIAAKYPGLGAEVRGRGMMQGIDF--GDGE----LAGKIAAEAFENGLIIETSGPEDE 388
Query: 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
V L+PP +++ E++ + + EV+
Sbjct: 389 VVKLLPPLTIDEEELEEGLDILEEAVAEVLA 419
|
Length = 425 |
| >gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 9e-39
Identities = 107/449 (23%), Positives = 187/449 (41%), Gaps = 97/449 (21%)
Query: 37 LDAISSWWVNLFGHSNSYINKALKNQL--------NKLEHVMLSNLTHKPVIKLSEKLSS 88
DA +SWW + L+ +L + HVM H+P ++ +E L
Sbjct: 368 FDACASWWT-------QGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELL-- 418
Query: 89 LTQYKLG--------HCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK------------ 127
LG F+ +G++A+EVALKM+F + + GFL
Sbjct: 419 -----LGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIEL 473
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLL--------------------NKTYIIT 167
K + L SYHG+TLGA+ Q+ ++T L N + I+
Sbjct: 474 KVLALDGSYHGDTLGAM---EAQA-PSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNIS 529
Query: 168 TPDSRN-INKGNSANEIARCAIFDLEILLKKNHN--------------------KIAAII 206
P+ + +G +R +FD IAA+I
Sbjct: 530 LPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALI 589
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IEP++ AGGM++ D ++ + + ++C + I +I DE+ G R G A E PD
Sbjct: 590 IEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDI 649
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
C +K +TGG +PL+ + T++++ + + ++ LH HSY+ +P+ C AA L+ +
Sbjct: 650 ACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK 709
Query: 327 KDNILQRISQDMKKI-----TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ-IETFS 380
+ + ++ + + ++ + P + G + A ++ E +
Sbjct: 710 DPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTVLALELDAEGSGSGYSSLY 769
Query: 381 KKFFVAALKNE--LLLRPIGNTVYLM-PP 406
+ V L+ E + RP+GN VYLM P
Sbjct: 770 ARSVVRRLRREDGIYARPLGNVVYLMCGP 798
|
Length = 817 |
| >gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-38
Identities = 110/422 (26%), Positives = 195/422 (46%), Gaps = 35/422 (8%)
Query: 30 DVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKL 86
D G+RY+DA + + VN+ G+ + + +A+ Q +L H + + T + I LS+++
Sbjct: 46 DAQGRRYIDAFAGLYCVNV-GYGRTEVAEAIAEQAKELAYYHTYVGHGT-EASITLSKRI 103
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ +YG G+ A E +K+ ++Y G KKK I YHG + ++
Sbjct: 104 IDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSL 163
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKIAA 204
T + F + + + + P R + G S + A CA E++L + + IAA
Sbjct: 164 TGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAA 223
Query: 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
I EP V GG++ + Y ++ + Y+I LIADE+ G GR G F +H I P
Sbjct: 224 FIAEP-VLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEP 282
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSHSYSGNPLACCAALATLE 323
D + ++KG+T Y PLS + +K+++ + + H +YSG+P+ AALA L+
Sbjct: 283 DLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLD 342
Query: 324 IFNKDNILQRISQD----MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379
I ++N++ ++ ++ A HP + R GM+ A + + D +
Sbjct: 343 ILERENLVGNAAEVGAYFRARLRAAFGD---HPLVGEVRGVGMLAAVE-FVADRD----- 393
Query: 380 SKKFFVAALK-----------NELLLR--PIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ F ALK ++ R P G+ + PP +L + E + + +
Sbjct: 394 DRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVD 453
Query: 427 EV 428
EV
Sbjct: 454 EV 455
|
Length = 461 |
| >gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-38
Identities = 105/412 (25%), Positives = 178/412 (43%), Gaps = 69/412 (16%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT----- 75
K SW L D +GKRYLD I W VN GH N + +AL Q KL +
Sbjct: 26 KGSW---LYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKL-------INPSPAF 75
Query: 76 -HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---KFIC 131
++P+ KL+ L+ + + F+ + GA A E A+K++ + G +K + I
Sbjct: 76 YNEPMAKLAGLLTQHSCFD--KVFFANSGAEANEGAIKLARKW----GRKHKNGAYEIIT 129
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA---RCAI 188
+S+HG TL ++ + + I+ A ++ + +
Sbjct: 130 FDHSFHGRTLATMSASGKPGWDTIF-----------------------APQVPGFPKAEL 166
Query: 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
D+ + K +K A+++EP VQ GG+I +++ +R + + + LI DE+ GC
Sbjct: 167 NDIASVEKLITDKTVAVMLEP-VQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGC 225
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH-- 306
GRTG FA E + I PD + L KGI GG +PL+ ++ + + +F
Sbjct: 226 GRTGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAE----------VAVFEAGDQG 274
Query: 307 -SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
+Y+GNPL +A + L+ + + + + L L + R +G++ A
Sbjct: 275 GTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLELSEERGLEGERGEGLLRA 334
Query: 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHM 417
+ + QI ++ L LL P N + MP + EI M
Sbjct: 335 LLLGKDIGPQIVEKARDMQPDGL---LLNAPRPNLLRFMPALNVTTEEIDQM 383
|
Length = 395 |
| >gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 117/401 (29%), Positives = 186/401 (46%), Gaps = 68/401 (16%)
Query: 30 DVSGKRYLDAISSW-WVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKLS 87
D G RY+D +S++ VN GH + I +ALK+Q +K+ + S H + EK++
Sbjct: 36 DPEGNRYMDMLSAYSAVNQ-GHRHPKIIQALKDQADKV--TLTSRAFHSDQLGPWYEKVA 92
Query: 88 SLTQYKLGHCFYGSD-------GASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHG 138
LT G D GA AVE A+K + + Y+ KG NK + I + ++HG
Sbjct: 93 KLT---------GKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHG 143
Query: 139 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198
T+ A+++++ + +K + +L P + I G DLE L
Sbjct: 144 RTMAAVSLSSEEEYKRGFGPML--------PGIKKIPYG------------DLEALKAAI 183
Query: 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE 258
AA ++EP +Q G+ + +LK RE+C N+ IADEI G GRTGK FAC+
Sbjct: 184 TPNTAAFLVEP-IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACD 242
Query: 259 HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLAC 315
+ PD L K + GG P+S V I + +F H ++ GNPLAC
Sbjct: 243 WDNVTPDMYILGKALGGGVFPISCVAANRDI---------LGVFTPGSHGSTFGGNPLAC 293
Query: 316 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ 375
++A LE+ ++ + +R S ++ + K I +P I R +G+ ++
Sbjct: 294 AVSIAALEVLEEEKLPER-SLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVEL------- 345
Query: 376 IETFSKKFFVAALKNE-LLLRPIGNTVY-LMPPYILNKNEI 414
+ + ALK E LL + TV PP ++ K E+
Sbjct: 346 --NEPARPYCEALKEEGLLCKETHETVIRFAPPLVITKEEL 384
|
Length = 396 |
| >gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 8e-38
Identities = 102/415 (24%), Positives = 193/415 (46%), Gaps = 34/415 (8%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV GK Y+D ++S GH+ + +A+K Q +K H + + H+P+++L++KL
Sbjct: 36 LTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLC 95
Query: 88 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L ++ F G G+ A + +K + + + + I N+YHG T G+L+
Sbjct: 96 ELAPGDFEKRVTF-GLSGSDANDGIIKFA------RAYTGRPYIISFTNAYHGSTYGSLS 148
Query: 146 VTNIQ-SFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIAR-CAIFDLEILLKKNHNKI 202
++ I + + Y LL I PD R + + AN + A +++
Sbjct: 149 MSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEV 208
Query: 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262
A I+IE +Q GG++ Y + + + C + I D+I G GRTGK+ + H I
Sbjct: 209 ACIVIET-IQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNI 267
Query: 263 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL 322
PD + K + GG +P+S ++ +I S+ ++ + NP++C AALAT+
Sbjct: 268 TPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEAPAHL------FTTGANPVSCAAALATI 320
Query: 323 EIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSK 381
++ +++LQR ++ + K ++ + + + R G+ D I+ D + ++
Sbjct: 321 DMIEDESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGID-IVSDKKLKTRDNE 379
Query: 382 KFFVAALK--------NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
AALK +++ GN + PP ++ ++ + I Q F +
Sbjct: 380 ----AALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFTAL 430
|
Length = 445 |
| >gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (356), Expect = 1e-37
Identities = 91/321 (28%), Positives = 155/321 (48%), Gaps = 31/321 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D GK Y+D VN GH++ + +AL Q +K H + T++PV++L++KL
Sbjct: 33 LWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLI 91
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
T F+ + GA A E ALK++ Y +++ +K + +N++HG TL ++
Sbjct: 92 DATFAD--RVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAG 149
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207
+ + + L +I A DL ++ A+I+
Sbjct: 150 GQPKYSQDFAPL--------------------PPDIRHAAYNDLNSASALIDDQTCAVIV 189
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
EP +Q GG+I D +L+ +RE+C+ +N LI DE+ G GRTG+ +A H + PD L
Sbjct: 190 EP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVL 248
Query: 268 CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327
+K + GG+ P+ ++TT+K + + + H +Y GNPLA A LE+ N
Sbjct: 249 TTAKALGGGF-PIGAMLTTEK------CASVMTVGTHGTTYGGNPLASAVAGKVLELINT 301
Query: 328 DNILQRISQDMKKITKALTSL 348
+L + Q + L ++
Sbjct: 302 PEMLNGVKQRHDWFVERLNTI 322
|
Length = 406 |
| >gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-37
Identities = 114/418 (27%), Positives = 201/418 (48%), Gaps = 34/418 (8%)
Query: 28 LIDVSGKRYLD---AISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 84
+ DV G +Y+D AI + V GHS+ + +AL Q+++ H + + ++P I+L+E
Sbjct: 48 VTDVDGNQYIDFAGAIGTINV---GHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAE 104
Query: 85 KLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLG 142
KL++L + F S GA AVE A+K++ Y +G I +HG TL
Sbjct: 105 KLAALAPGSFDKKVLFLNS-GAEAVENAVKIARKYTKRQGI------ISFSRGFHGRTLM 157
Query: 143 ALAVTN-IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEILLKKNH 199
+ +T+ ++ +K + + Y P +G + + I F + +
Sbjct: 158 TMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAP 217
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
IAA+++EP VQ GG I+ +++ VR IC+ + I +ADEI G RTGK+FA EH
Sbjct: 218 ETIAAVVMEP-VQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEH 276
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 319
++ PD + +SK + G +P+S V+ +I + +Y+G+PL C AAL
Sbjct: 277 FDVVPDLITVSKSLGAG-VPISGVIGRKEIMDE------SAPGELGGTYAGSPLGCAAAL 329
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIE- 377
A L+I K+N+ R + K + + + I + R G + AF+ +++D + E
Sbjct: 330 AVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFE-LVQDRKTKEP 388
Query: 378 --TFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
T + A K LLL GN + ++ P ++ +++ + I ++
Sbjct: 389 DKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQACYE 446
|
Length = 451 |
| >gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-36
Identities = 100/393 (25%), Positives = 170/393 (43%), Gaps = 55/393 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
LID GK+YLD S V G + + +AL+ Q + H P + L+
Sbjct: 23 LIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAG--------LIWHSPNLYLNSLQE 73
Query: 88 SLTQYKLGH----CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 143
+ Q +G F+ + GA A E A+K++ + K++ I QNS+HG T G+
Sbjct: 74 EVAQKLIGDKDYLAFFCNSGAEANEAAIKIA------RKATGKQEIITFQNSFHGRTFGS 127
Query: 144 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203
++ T K+ + G+ + DL + + A
Sbjct: 128 MSATGQDKIKDGF--------------------GDGVPHFSYAIFNDLNSVKALVNKNTA 167
Query: 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
A+++E LVQ G++ D ++K + + C I LI DE+ G GRTGK +A EH I
Sbjct: 168 AVMLE-LVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIE 226
Query: 264 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323
PD L+KG+ G +P+ ++ + + Y + H ++ GN L+ AA ATL+
Sbjct: 227 PDIFTLAKGLANG-VPVGAMLAKSSLGGAFGYGS------HGSTFGGNKLSMAAASATLD 279
Query: 324 IFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 382
I L++ ++ + + L +L + R G + + D Q+ ++
Sbjct: 280 IMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIET-TADLSQLVEAARD 338
Query: 383 FFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
K ++L N + L+PP L K EI+
Sbjct: 339 ------KGLIVLTAGTNVIRLLPPLTLTKEEIE 365
|
Length = 375 |
| >gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-36
Identities = 122/425 (28%), Positives = 191/425 (44%), Gaps = 48/425 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
L I + W + DV G +YLD ++ GH++ + +++++ L + +L
Sbjct: 42 LAIAKAQGVW---VTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDL 98
Query: 75 THKPVIKLSEKLSSL-----TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
T SE L SL +Y L G GA AVE A+K++ K + +
Sbjct: 99 TTPLKDAFSEYLLSLLPGQGKEYCLQFT--GPSGADAVEAAIKLA------KTYTGRSNV 150
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN--INKGNSANEIARCA 187
I YHG T GALAVT S K L+ + P + G A A
Sbjct: 151 ISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTY 210
Query: 188 IFDLEIL-LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
F+ I ++ K AA+I+E +Q GG+ +L+ +RE+ + I LI DE+
Sbjct: 211 YFENFIEDVESGVRKPAAVILEA-IQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQA 269
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306
G RTGK FA EHA I PD + +SK + GG LPL+ V+ K +++ H+
Sbjct: 270 GFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPLA-VLGIKKEFDAWQPGG------HTG 321
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWA 365
++ GN LA L TL+I ++N+ Q ++ + + L L +P I N R +G++
Sbjct: 322 TFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIG 381
Query: 366 FDVIIE------------DPEQIETFSKKFFVAALKNELLLRP---IGNTVYLMPPYILN 410
+++ E D E K F +N LLL GN V L+PP ++
Sbjct: 382 IEIVDERQPADAMGSYPADGELAAAIQKACF----ENGLLLERGGRNGNVVRLLPPLLIT 437
Query: 411 KNEIQ 415
+ E +
Sbjct: 438 QAECE 442
|
Length = 459 |
| >gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 1e-35
Identities = 106/396 (26%), Positives = 189/396 (47%), Gaps = 37/396 (9%)
Query: 22 NSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIK 81
N+ W D G+RY+D + V GH + + A+K QL++ H + ++ ++
Sbjct: 31 NAEIW---DKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVR 87
Query: 82 LSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L+E+L++L + F + GA AVE A+K++ + I +HG
Sbjct: 88 LAERLNALVPGDFAKKTIFV-TTGAEAVENAVKIARAA------TGRSAVIAFGGGFHGR 140
Query: 140 TLGALAVT-NIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197
T +++T + +K + +++ Y + P + ++ S + + D++
Sbjct: 141 TFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD----- 195
Query: 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
++AAIIIEP VQ GG + ++K +RE+C+ + I LIADE+ G RTGK FA
Sbjct: 196 -PQRVAAIIIEP-VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAM 253
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317
EH E+ D ++KG+ GG PL+ V +I ++ +Y GNPL A
Sbjct: 254 EHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGPGG------LGGTYGGNPLGIAA 306
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIEDPEQI 376
A A L++ ++++ +R +Q ++ + L SL P+I + R G + A V D +
Sbjct: 307 AHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNA--VEFNDADSG 364
Query: 377 E---TFSKKFFVAALKNELLLRPI---GNTVYLMPP 406
F+ + + AL+ L+L GN + + P
Sbjct: 365 LPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAP 400
|
Length = 425 |
| >gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 1e-35
Identities = 111/407 (27%), Positives = 185/407 (45%), Gaps = 63/407 (15%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
+ DV G R +D S V G+S + +A++ Q+ + H ++ + ++E+L+
Sbjct: 50 VEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLN 109
Query: 88 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
LT ++ + S GA AVE A+K++ Y ++ + ++YHG T +A
Sbjct: 110 RLTPGDHEKRSALFNS-GAEAVENAVKIARSY------TGRQAVVVFDHAYHGRTNLTMA 162
Query: 146 VTNIQS-FK--------EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI--FDLEIL 194
+T +K E+Y + ++ Y E A AI + ++
Sbjct: 163 LTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGL------ATDGEEAAARAITVIEKQV- 215
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+ +AA+IIEP +Q GG I+ +L + E C + IADE+ G RTG +
Sbjct: 216 ---GADNLAAVIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAW 271
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH------SY 308
FACEH I PD + +KGI GG LPLS V +I ++ H +Y
Sbjct: 272 FACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAP------------HPGGLGGTY 318
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFD 367
GNP+AC AALA +E +D+++ R Q +T L +L +I + R +G + A +
Sbjct: 319 GGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIE 378
Query: 368 VIIE-----DPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPP 406
++ D E +K AA +++ G N + L+PP
Sbjct: 379 LVKPGTTEPDAE----LTKALAAAAHAAGVIVLTCGTYGNVIRLLPP 421
|
Length = 443 |
| >gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-35
Identities = 111/408 (27%), Positives = 176/408 (43%), Gaps = 70/408 (17%)
Query: 24 WKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-----HKP 78
W W D G RYLD +S++ GH + I A+ Q +L LT +
Sbjct: 34 WVW---DTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRL------TLTSRAFRNDQ 84
Query: 79 VIKLSEKLSSLTQYKLGHCFYGS-------DGASAVEVALKMSFHYWYN-KGFL-NKKKF 129
+ L E+L++LT GS GA AVE A+K + Y KG + +
Sbjct: 85 LAPLYEELAALT---------GSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEI 135
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
I +++HG TL I F T PD+R G R F
Sbjct: 136 IVCADNFHGRTLS------IVGFS-------------TDPDARG-GFGPFTPGF-RVVPF 174
Query: 190 -DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
D E L A ++EP +Q G+I+ + Y VRE+C N+ LI DEI G
Sbjct: 175 GDAEALEAAITPNTVAFLVEP-IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308
GRTGK A EH I D + K ++GG+ P+S V++ ++ + H ++
Sbjct: 234 GRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQ------HGSTF 287
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDV 368
GNPLAC A A L++ ++ +++ ++ + L S I + R +G++ A ++
Sbjct: 288 GGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRS-IRSNIVREVRGRGLMLAVEL 346
Query: 369 IIEDPEQIETFSKKFFVAALKNELLL--RPIGNTVYLMPPYILNKNEI 414
+ E + + ALK LL +T+ L PP ++ + ++
Sbjct: 347 ------EPEAGGARQYCEALKERGLLAKDTHDHTIRLAPPLVITREQV 388
|
Length = 401 |
| >gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 1e-34
Identities = 101/389 (25%), Positives = 188/389 (48%), Gaps = 49/389 (12%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
+L DV G+ Y+D + V GH + + A++ QL++ H + + + L+E++
Sbjct: 33 TLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERI 92
Query: 87 SSLTQYKLGHC---FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 143
++L G F+ + GA AVE A+K++ Y G I ++HG TL
Sbjct: 93 NALAPID-GPAKTAFF-TTGAEAVENAVKIARAYTGRPGV------IAFGGAFHGRTLLT 144
Query: 144 LAVT-NIQSFK--------EIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193
+A+T + +K I+ +L N+ + ++ ++ + S + + I
Sbjct: 145 MALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALS-----SVERLFKADI----- 194
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+++AAI++EP +Q GG + ++ +R +C+ + I LIADE+ G RTGK
Sbjct: 195 ----APDQVAAILLEP-IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK 249
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FA E+ ++ PD + ++K + GG P+S V+ ++ ++ +Y+GNPL
Sbjct: 250 LFAMEYYDVKPDLITMAKSLGGGM-PISAVVGRAEVMDAPAPGG------LGGTYAGNPL 302
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKIINFRQKGMIWAFDVIIED 372
A AALA L++ ++ + QR + + L P I++ R +G + A V D
Sbjct: 303 AVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVA--VEFND 360
Query: 373 PEQIE---TFSKKFFVAALKNELLLRPIG 398
P+ + F++++ AL+ LLL G
Sbjct: 361 PQTGKPSPEFTRQYQRQALEEGLLLLSCG 389
|
Length = 421 |
| >gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 1e-34
Identities = 112/404 (27%), Positives = 186/404 (46%), Gaps = 37/404 (9%)
Query: 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN 73
N +S +N+ +L DV G Y+D + V GH + + A++ QL + H
Sbjct: 23 NFFAQSAENA---TLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQI 79
Query: 74 LTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131
+ ++ + L+EK+++L + F+ + GA AVE A+K++ + + I
Sbjct: 80 VPYESYVTLAEKINALAPVSGQAKTAFF-TTGAEAVENAVKIA------RAHTGRPGVIA 132
Query: 132 LQNSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIF 189
+HG T +A+T + +K + Y + P D I+ +S + I R
Sbjct: 133 FSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKS 192
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
D+E ++AAII EP VQ GG + + +R +C+ + I +IADE+ G
Sbjct: 193 DIEA------KQVAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFA 245
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTGK FA +H PD + ++K + GG +PLS V+ I ++ +Y+
Sbjct: 246 RTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAPGG------LGGTYA 298
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWA-- 365
GNPLA AA A L I +K+++ +R +Q +++ L + P I R G MI A
Sbjct: 299 GNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEF 358
Query: 366 FDVIIEDPEQIETFSKKFFVAALKNELLLR---PIGNTVYLMPP 406
D +P ++K AL LLL GN + + P
Sbjct: 359 NDPQTGEPSAA--IAQKIQQRALAQGLLLLTCGAYGNVIRFLYP 400
|
Length = 421 |
| >gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 2e-31
Identities = 105/399 (26%), Positives = 199/399 (49%), Gaps = 37/399 (9%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
DV G ++D ++ G+S+ + KA++ Q+ ++H M+ + I+++EKL+ +
Sbjct: 49 DVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEI 108
Query: 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVTN 148
+ + +G G+ AV++A+K+S F ++ +I +YHG+TLGA +V
Sbjct: 109 SPIENPKVLFGLSGSDAVDMAIKVS-------KFSTRRPWILAFIGAYHGQTLGATSVAA 161
Query: 149 IQ-SFKEIYTSLLNKTYIITTPDS-RN---INKGNSANEIARCAIFDLEILLKKN---HN 200
Q S K ++ L+ I P+ RN IN +E+ + LE + + +
Sbjct: 162 FQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPD 221
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
++AA+ EP +Q G+++ + K ++++ + + I L+ DE+ G GRTGK+FA E
Sbjct: 222 EVAALFAEP-IQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWF 280
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY----SGNPLACC 316
E+ PD + KG+ G + LS V+ ++ + L S S + NP+
Sbjct: 281 EVKPDLIIFGKGVASG-MGLSGVIGRKELMD-----------LTSGSALLTPAANPVISA 328
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQ 375
AA ATLEI ++N+L+ + + I K L + ++I + R KG++ +++ E+ +
Sbjct: 329 AAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKP 388
Query: 376 IETFSKKFFVAALKNELLLRP---IGNTVYLMPPYILNK 411
+ K A + L+L GN + + PP ++ K
Sbjct: 389 DPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITK 427
|
Length = 457 |
| >gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 34/322 (10%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSS 88
D G+ YLD + V GH++ + AL Q KL H SN+ + P +KL+E+L +
Sbjct: 36 DDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT--SNVFYSAPPLKLAEELVT 93
Query: 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI-CLQNSYHGETLGALAVT 147
+++ F + G A E A+K+ + ++G K+ I + S+HG TL A+ T
Sbjct: 94 ASRFA-EKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTAT 152
Query: 148 NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
++E Y L P R ++ N++ LE + +AA++
Sbjct: 153 AQPKYQEGYEPL---------PGGFRYVD----FNDVEA-----LEAAMAG--GDVAAVM 192
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP +Q GG++ +L VR +C+ ++ L+ DEI G GRTG FA ++ PD
Sbjct: 193 LEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDI 251
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ L+K + GG+ P+ ++ K+ ++ + H ++ GNPLA A L
Sbjct: 252 VTLAKALGGGF-PIGAMLAGPKVAETMQFG------AHGTTFGGNPLAAAVARVALRKLA 304
Query: 327 KDNILQRISQDMKKITKALTSL 348
I +++ + L +L
Sbjct: 305 SPQIAANVARQSAALRAGLEAL 326
|
Length = 408 |
| >gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-29
Identities = 85/284 (29%), Positives = 135/284 (47%), Gaps = 27/284 (9%)
Query: 98 FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 157
F G G AVE ALK+ K + + Q YHG + GAL++ K+
Sbjct: 131 FCGPTGTDAVEAALKLV------KTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLG 184
Query: 158 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCA 214
+LL + P G R + LE LL + + AA+I+E +VQ
Sbjct: 185 ALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILE-VVQGE 243
Query: 215 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT 274
GG+I +L+ +R I I LI DEI G GRTGK FA EHA I PD + LSK I
Sbjct: 244 GGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAI- 302
Query: 275 GGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNIL 331
GG LPL++V+ Y+ ++ + H+ ++ GN +A A ATL + +
Sbjct: 303 GGSLPLAVVV----------YREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLA 352
Query: 332 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE 374
+ + +++ + L L +P++ + R +G++ +++ DP+
Sbjct: 353 EHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIV--DPQ 394
|
Length = 464 |
| >gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 6e-23
Identities = 91/403 (22%), Positives = 160/403 (39%), Gaps = 85/403 (21%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV G Y+D + W + GH++ + +A++ QL + + + ++L+E L
Sbjct: 47 LTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG---LSFGAPTELEVELAELLI 103
Query: 88 SLTQ--YKLGHCFYGSDGA--SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 143
K+ G++ A SA+ +A + + + K I + YHG +
Sbjct: 104 ERVPSIEKVRFVNSGTE-ATMSAIRLA----------RAYTGRDKIIKFEGCYHGHSDSL 152
Query: 144 L-------AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
L A S + + T + P N++ LE +
Sbjct: 153 LVKAGSGAATLGSPSSPGVPADVAKHT--LVLP----------YNDLE-----ALEEAFE 195
Query: 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF- 255
+ + IAA+I+EP V G++ + +L+ +RE+ + LI DE+ TG F
Sbjct: 196 EYGDDIAAVIVEP-VAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV-----ITG--FR 247
Query: 256 -----ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN------SIYYKNNINIFLH 304
A + + PD L K I GG LP+ +I +Y
Sbjct: 248 VALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAPLGPVY---------Q 297
Query: 305 SHSYSGNPLACCAALATLE-IFNKDNILQRISQDMKKITKALTSLITHPKI---INFRQK 360
+ + SGNPLA A LATLE + ++ + +R+ +++ + L + I +N R
Sbjct: 298 AGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVN-RVG 356
Query: 361 GM--IWAFDVIIEDPEQ-----IETFSKKFFVAALKNELLLRP 396
M I+ + + + +E F KFF L + L P
Sbjct: 357 SMFGIFFTEEGVRNYADAKRSDVERF-AKFFHHLLNRGVYLAP 398
|
Length = 432 |
| >gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 93/348 (26%), Positives = 167/348 (47%), Gaps = 47/348 (13%)
Query: 24 WKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 83
W+ L D++G+ YLD +++ V + GH + + A Q + L S + V + S
Sbjct: 575 WRHHLFDMAGRSYLDMVNN--VTVLGHGHPRLAAAAARQWSLLN--TNSRFHYAAVAEFS 630
Query: 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 143
E+L++L L F + G+ A ++A++++ W G ++ + + +YHG T+
Sbjct: 631 ERLAALAPDGLDTVFLVNSGSEANDLAIRLA---WAASG---RRDVVSVLEAYHGWTVAT 684
Query: 144 LAV-TNIQSFKEIYTSLLNKTYIITTPDS-RNINKG-NSANEIARCAIFDLEILLKKNHN 200
AV T+I + + + + + +P++ R +G +SA + R + LE L
Sbjct: 685 DAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASG-R 743
Query: 201 KIAAIIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNYNIHLIADEIAVGCGRTGK 253
+A I EP+ AGG+ + YL+ VR +C IADE+ VG GR G
Sbjct: 744 GLAGFICEPVYGNAGGIALPPG-YLQQVYAAVRARGGVC-------IADEVQVGYGRLGH 795
Query: 254 FF-ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSI----YYKNNINIFLHSHSY 308
+F E + PD + ++KG+ G+ PL V+T +I ++ Y+ F S
Sbjct: 796 YFWGFEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEALEAEGYF------F---SST 845
Query: 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKA-LTSLIT-HPKI 354
G+P++C +A L++ ++ LQ ++ + KA L +L HP I
Sbjct: 846 GGSPVSCRIGMAVLDVL-REEKLQENARRVGDHLKARLEALADRHPLI 892
|
Length = 972 |
| >gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 68/337 (20%)
Query: 24 WKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN--LTHKPVIK 81
W LID G+ YLD ++ V GH++ + A Q +L +N H ++
Sbjct: 614 WGVWLIDNRGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLN----TNTRYLHDAIVA 667
Query: 82 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 141
+E+L++ L F+ + G+ A +AL+++ + + I L ++YHG T
Sbjct: 668 YAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHTGQRDA------IVLDHAYHGTTT 721
Query: 142 GALAVTNIQSFKEIYTSLLNK---------TYIITTPDSRNINKGNS--------ANEIA 184
+ + +K N+ + PDS + A +A
Sbjct: 722 ELID---LSPYK------FNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVA 772
Query: 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK----LVRE---ICNNYNI 237
I + K A I E + AG + + + YL+ +VR +C
Sbjct: 773 E-QI---AAMAAKGR-GPAFFIAESIPSVAGQIFLPEG-YLREVYAMVRAAGGVC----- 821
Query: 238 HLIADEIAVGCGRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK 296
IADE+ VG GR G ++A E + PD + + K I G+ P+ V+TT +I +S +
Sbjct: 822 --IADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIADS--FD 876
Query: 297 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR 333
N + F +++ GNP++C LA L+I ++ LQR
Sbjct: 877 NGMEYF---NTFGGNPVSCAIGLAVLDIIEDED-LQR 909
|
Length = 1013 |
| >gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 94/406 (23%), Positives = 159/406 (39%), Gaps = 92/406 (22%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV G Y+D + SW + GH++ + +A+K L E + I L++++
Sbjct: 42 LYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEAL---ERGTSYGAPTEAEILLAKEII 98
Query: 88 SL--TQYKLGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL 144
S + + G++ SAV +A +G+ + K I + YHG
Sbjct: 99 SRVPSVEMVRFVNSGTEATMSAVRLA----------RGYTGRDKIIKFEGCYHGH----- 143
Query: 145 AVTNIQSFKEIYTSLLNK------TYIITTPDSRNINKGNSANEIARCAIFDLEIL---L 195
+ +LL K T + P S + + + + DLE L
Sbjct: 144 -----------HDALLVKAGSGAATLGL--PTSPGVPEDFAKLTLV-LPYNDLEALEEVF 189
Query: 196 KKNHNKIAAIIIEPLVQCAGGM--IMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
++ +IA +I+EP+ AG M + +L +R + Y LI DE+ G R
Sbjct: 190 EEYGEEIAGVIVEPV---AGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL 245
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLP----------LSLVMTTDKIYNSIYYKNNINIFL 303
A E+ + PD L K I GG LP + + +Y +
Sbjct: 246 GGAQEYFGVEPDLTTLGK-IIGGGLPVGAFGGRREIMERLAPEGPVYQA----------- 293
Query: 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI---INFRQK 360
+ SGNPLA A LATL++ +++ + + + K++ + L+ ++ I +N R
Sbjct: 294 --GTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVN-RVG 350
Query: 361 GMIWAFDVIIEDPE----------QIETFSKKFFVAALKNELLLRP 396
M F + + E E F KFF L + L P
Sbjct: 351 SM---FSLFFTEEEVTNYADAKKSDTELF-AKFFHEMLDKGVFLPP 392
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423 |
| >gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 7e-20
Identities = 79/348 (22%), Positives = 143/348 (41%), Gaps = 42/348 (12%)
Query: 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK---------KFICLQNSYHGETLGAL 144
L H F+ GA AVE ALK +F W K N+ + + L+ ++HG + L
Sbjct: 103 LPHLFFIEGGALAVENALKTAFD-W--KSRHNQARGIPAALGTQVLHLRQAFHGRSGYTL 159
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA--RCAIFDLEILLKKNHNKI 202
++TN K + I + ++ N IA A+ + + I
Sbjct: 160 SLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDI 219
Query: 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262
A I EP +Q GG + +L+ +R +C+ ++ LI DE+ G G TG +A + +
Sbjct: 220 ACFIAEP-IQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGV 278
Query: 263 WPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHSYSGNPLACC 316
PD + K GI G D++ ++++ + +N ++ GN +
Sbjct: 279 QPDIVAFGKKTQVCGIMAG-------RRVDEVADNVFAVPSRLN-----STWGGNLVDMV 326
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIWAFDVIIEDPE 374
A LEI ++ ++ + L L P ++ N R +G++ AFD +
Sbjct: 327 RATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD--LPSTA 384
Query: 375 QIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 421
+ ++ + + +LL G ++ PP + + EI AI
Sbjct: 385 DRDEVIRQLY----REGVLLLGCGERSIRFRPPLTVTREEIDAAIDAI 428
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431 |
| >gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 7e-20
Identities = 80/358 (22%), Positives = 142/358 (39%), Gaps = 62/358 (17%)
Query: 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK------KFICLQNSYHGETLGALAVT 147
L H F+ GA AVE ALK++F + K K + L+ ++HG + L++T
Sbjct: 110 LPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLT 169
Query: 148 NIQSFKEIYTSLLNKT-YI-------ITTPDSRNINKGNSANEIA---RCAIFDLEILLK 196
N KT I P R G E+ A+ +
Sbjct: 170 NTDP---------RKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFE 220
Query: 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
++ + IA I EP +Q GG + + +RE+C+ ++ LI DE+ G G TG +A
Sbjct: 221 RHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWA 279
Query: 257 CEHAEIWPDFLCLSK-----GITGGYLPLSLVMTTDKIYNSIYYKNNINIF-----LHSH 306
+ + PD + K GI G D++ + N+F ++S
Sbjct: 280 YQQLGVRPDIVAFGKKTQVCGIMAG-------RRVDEVED--------NVFAVSSRINS- 323
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMIW 364
++ GN + A LE+ +D +++ ++ + + L L P ++ N R +G++
Sbjct: 324 TWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMC 383
Query: 365 AFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAI 421
AFD+ + + +L+ P G ++ P + EI A+
Sbjct: 384 AFDL--PTTAD----RDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDAL 435
|
Length = 443 |
| >gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 5e-19
Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 69/361 (19%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
FK +V +K S+ W DV G Y+D + SW + GH++ + AL + K
Sbjct: 75 FKSVGGQPIVFDRVKGSYAW---DVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKG 131
Query: 67 EH----VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122
+L N+ + VI + S+ + F S G A L+++ +
Sbjct: 132 TSFGAPCLLENVLAEMVID---AVPSVEMVR----FVNS-GTEACMGVLRLA------RA 177
Query: 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182
+ ++K I + YHG L +++ + T L PDS + K ++
Sbjct: 178 YTGREKIIKFEGCYHGHADSFL----VKAGSGVATLGL--------PDSPGVPKAATSAT 225
Query: 183 IARCAIF-DLEI---LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238
+ A + DLE L + N +IAA+I+EP+V + G I+ +L+ +REI
Sbjct: 226 L--TAPYNDLEAVKKLFEANKGEIAAVILEPVVGNS-GFIVPKKEFLEGLREITKENGAL 282
Query: 239 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP----------LSLVMTTDK 288
L+ DE+ G R A E+ I PD L K I GG LP + +V
Sbjct: 283 LVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAPAGP 340
Query: 289 IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+Y + + SGNPLA A + TL+ + + + KITK L
Sbjct: 341 MY-------------QAGTLSGNPLAMTAGIHTLKRLQQPGTYEY----LDKITKKLIQG 383
Query: 349 I 349
I
Sbjct: 384 I 384
|
Length = 474 |
| >gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-18
Identities = 91/378 (24%), Positives = 155/378 (41%), Gaps = 70/378 (18%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI------- 80
L+DV G R LD S G++N + KA ++ M + L ++P +
Sbjct: 52 LVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP------EMATTLINRPALGNFPSKD 105
Query: 81 ---KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK------GFLNKKKFIC 131
L E + + + G G+ A E+A K +F Y+ +K F ++ C
Sbjct: 106 WAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESC 165
Query: 132 LQN---------------SYHGETLGALAVT--------NIQSFKEIYTSLLNKTYIITT 168
+ N ++HG G+L+ T +I +F + Y
Sbjct: 166 MDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKY---- 221
Query: 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 228
P ++ + +A E RC + ++E L+KK H +AAII+EP +Q GG + + +
Sbjct: 222 PLEEHVKE--NAKEEQRC-LEEVEDLIKKWHKPVAAIIVEP-IQSEGGDNHASPDFFRKL 277
Query: 229 REICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGI-TGGYLPLSLVMT 285
R+I +N+ I DE+ G G TGKF+A EH + PD + SK T GY
Sbjct: 278 RDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGYFFHDPAFR 337
Query: 286 TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 345
+K Y +++ G+P ++ + ++L+ ++ + L
Sbjct: 338 PNKPYR------------QFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL 385
Query: 346 TSLIT-HP-KIINFRQKG 361
L +P I N R KG
Sbjct: 386 EDLQKKYPEFIQNLRGKG 403
|
This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 1e-14
Identities = 63/238 (26%), Positives = 97/238 (40%), Gaps = 53/238 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+E L ++ ++IAA+I+EP AG G++ +L+ +RE+C+ + LI DE V
Sbjct: 187 VEELFEEYGDEIAAVIVEP---VAGNMGVVPPKPGFLEGLRELCDEHGALLIFDE--VMT 241
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 297
G R A + + PD L K I GG LP+ + +Y
Sbjct: 242 GFRVALGGAQGYYGVTPDLTTLGK-IIGGGLPVGAFGGRREIMEQLAPLGPVYQ------ 294
Query: 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 354
+ + SGNPLA A LATL++ + + + K++ + L P
Sbjct: 295 -------AGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLT 347
Query: 355 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+N R M F D + + E F +FF A L G VYL P
Sbjct: 348 VN-RVGSMFGLFFTDEPVTNYADAKKSDTERF-ARFFHAMLDE-------G--VYLAP 394
|
Length = 426 |
| >gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 90/419 (21%), Positives = 159/419 (37%), Gaps = 118/419 (28%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQL---------NKLEHVMLSNLTHKP 78
DV G +Y+D ++++ + GH++ +I KA+ +LE + +
Sbjct: 47 FYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELE-IEFAK----- 100
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 138
L E + SL + + F S G AV ++++ + + + K I YHG
Sbjct: 101 --MLKEAIPSLEKVR----FVNS-GTEAVMTTIRVA------RAYTGRTKIIKFAGCYHG 147
Query: 139 E-------------TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185
TLG TPDS + K + A E+
Sbjct: 148 HSDLVLVAAGSGPSTLG-------------------------TPDSAGVPK-SIAQEVIT 181
Query: 186 CAIFDLEIL---LKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLI 240
D+E L L K +++AA+++EP+V G G++ +L+ V E+ + +I
Sbjct: 182 VPFNDIEALKEALDKWGDEVAAVLVEPIV---GNFGIVEPKPGFLEAVNELAHEAGALVI 238
Query: 241 ADEIAVGCGRTGKFF----ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK 296
DE+ T F A + + PD L K I GG LP+ Y
Sbjct: 239 YDEVI-----TAFRFMYGGAQDLLGVEPDLTALGK-IIGGGLPIGA------------YG 280
Query: 297 NNINIFLH---------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 347
+I + + +GNP + A +A LE+ ++ + +++ + + + +
Sbjct: 281 GRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE 340
Query: 348 LIT---HPKIINFRQKGMIWAF--DVIIEDPEQI-----ETFSKKFFVAALKNELLLRP 396
IN R KG + + D + + +Q E F KFF L + L P
Sbjct: 341 AAEKHGITITIN-RLKGALTVYFTDEKVTNYDQAERSDGEAFG-KFFKLMLNQGINLAP 397
|
Length = 428 |
| >gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 33/312 (10%)
Query: 29 IDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88
ID GK ++D SW + GHS+ I A++ E LT + I +E+L S
Sbjct: 48 IDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQ---QGAERGTSYGLTSEQEILFAEELFS 104
Query: 89 ---LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L +K+ + S G A A++++ +G + I YHG A
Sbjct: 105 YLGLEDHKIR---FVSSGTEATMTAVRLA------RGITGRSIIIKFLGCYHGH-----A 150
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205
T +Q TSL T+++ T + + N+ IF ++ H ++A +
Sbjct: 151 DTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDF---QIF-QTVMNSLGH-RVAGV 205
Query: 206 IIEPLVQCAG-GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
I EP+ CA G+++ +++ + + C I DE+ G R + A + P
Sbjct: 206 IFEPI--CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKP 262
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324
D K I GG LP + V+ I + + + I + + SGNPLA A A++ +
Sbjct: 263 DITVYGK-ILGGGLPAAAVVAHKSIMDHLAPEGTI---FQAGTLSGNPLAMAAGKASINL 318
Query: 325 FNKDNILQRISQ 336
+ ++S
Sbjct: 319 CREQGFYTQLST 330
|
Length = 433 |
| >gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 191 LEILLKKNHNKIAAIIIEP-LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI-AVGC 248
LE L +AA++ EP + GM++ + + + +RE+ Y L+ DE +
Sbjct: 210 LEAALA--DGDVAAVLAEPAMTNI--GMVLPEPGFHEALRELTRRYGTLLVIDETHTISS 265
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHSHS 307
G G + H + PDFL + K I GG +P ++ + ++ K + HS
Sbjct: 266 GPGG--YTRAHG-LEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKAS---APPGHS 318
Query: 308 -----YSGNPLACCAALATLE 323
S N LA A ATL
Sbjct: 319 GIGTTLSANALAMAAMRATLA 339
|
Length = 453 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 45/179 (25%)
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIY--------LKLVREICNNYNIHLIA 241
LE LL++ A + I+ + ++ L + E+ Y L
Sbjct: 157 HLEALLEEARENGARRKL----------IVTEGVFSMDGDIAPLPELVELAEKYGALLYV 206
Query: 242 DEI-AVG-CGRTGKFFACEHAEIWP---DFL--CLSK--GITGGYLPLSLVMTTDKIYNS 292
DE AVG G G+ EH + P D + L K G +GGY+ S +
Sbjct: 207 DEAHAVGVLGPNGRGL-AEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID------ 259
Query: 293 IYYKNNINIFLHSHSYSGN--PLACCAALATLEIFNKD----NILQRISQDMKKITKAL 345
Y +N +S P AALA L I + LQ ++ + + KAL
Sbjct: 260 -YLRN----RARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313
|
Length = 388 |
| >gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 33/188 (17%)
Query: 164 YIITTPDSRNINKGNSANEIARCAIFD------LEILLKKNHNKIAAIIIEP--LVQCAG 215
+I TTP ++ G A+ A F LE L + + +IA +I+EP +
Sbjct: 148 FIGTTP----MSAGIPASVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATADEPQD 203
Query: 216 GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC-----GRTGKFFACEHAEIWPDFLCLS 270
G +L VR +C+ I DE+ G G + I PD C
Sbjct: 204 G-------FLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLY------GIVPDLSCFG 250
Query: 271 KGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328
K + G+ +S + + + + + +FL S ++ A AA+AT+ I+ +
Sbjct: 251 KALGNGF-AVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDE 309
Query: 329 NILQRISQ 336
++++R+ +
Sbjct: 310 DVIERLHE 317
|
Length = 431 |
| >gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 0.004
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
L DV G Y+D + SW + GH++ + +A+ K
Sbjct: 44 LYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK 81
|
Length = 426 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 100.0 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 100.0 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 100.0 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 100.0 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 100.0 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07678 | 451 | aminotransferase; Validated | 100.0 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 100.0 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 100.0 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 100.0 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 100.0 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 100.0 | |
| PRK06105 | 460 | aminotransferase; Provisional | 100.0 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 100.0 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 100.0 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 100.0 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 100.0 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 100.0 | |
| KOG1404|consensus | 442 | 100.0 | ||
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 100.0 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 100.0 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 100.0 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 100.0 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| KOG1402|consensus | 427 | 100.0 | ||
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 100.0 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 100.0 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 100.0 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 100.0 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 100.0 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 100.0 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 100.0 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 100.0 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 100.0 | |
| KOG1401|consensus | 433 | 100.0 | ||
| PRK06148 | 1013 | hypothetical protein; Provisional | 100.0 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 100.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 100.0 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 100.0 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 100.0 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 100.0 | |
| PLN00144 | 382 | acetylornithine transaminase | 100.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 100.0 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 100.0 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 100.0 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 100.0 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 100.0 | |
| PRK07046 | 453 | aminotransferase; Validated | 100.0 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 100.0 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 100.0 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 100.0 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 100.0 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 100.0 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 100.0 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 100.0 | |
| KOG1403|consensus | 452 | 100.0 | ||
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 100.0 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 100.0 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 100.0 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 100.0 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 100.0 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 100.0 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 100.0 | |
| KOG1405|consensus | 484 | 100.0 | ||
| PRK07505 | 402 | hypothetical protein; Provisional | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 100.0 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 100.0 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 100.0 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.98 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| KOG1359|consensus | 417 | 99.96 | ||
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.96 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.96 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.96 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.96 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.96 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.95 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.95 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.94 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.94 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.94 | |
| PRK07324 | 373 | transaminase; Validated | 99.94 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.94 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.94 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.94 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.94 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.94 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.94 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.93 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.93 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.93 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.93 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.93 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.93 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.93 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.93 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.93 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.93 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.93 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.93 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.93 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.93 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.92 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.92 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.92 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.92 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.92 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.92 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.92 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.92 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.92 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.92 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.92 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.92 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.92 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.92 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.92 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.92 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN02656 | 409 | tyrosine transaminase | 99.92 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.92 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.92 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.92 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| PLN02187 | 462 | rooty/superroot1 | 99.92 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.92 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.92 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.91 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.91 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PLN02721 | 353 | threonine aldolase | 99.91 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.91 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.91 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.91 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.91 | |
| KOG0257|consensus | 420 | 99.91 | ||
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.91 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.91 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.91 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.91 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.91 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.91 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.91 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.91 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.91 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.91 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.9 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.9 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.9 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.9 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.9 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.9 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.9 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.9 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.9 | |
| PLN02231 | 534 | alanine transaminase | 99.9 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.9 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| KOG1360|consensus | 570 | 99.9 | ||
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.9 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.89 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.89 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.89 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.89 | |
| KOG0259|consensus | 447 | 99.89 | ||
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.89 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.89 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.89 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.89 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.88 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.88 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.88 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.87 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.87 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.87 | |
| PLN02651 | 364 | cysteine desulfurase | 99.87 | |
| PLN02397 | 423 | aspartate transaminase | 99.86 | |
| KOG1549|consensus | 428 | 99.86 | ||
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.85 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.85 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.85 | |
| PLN02368 | 407 | alanine transaminase | 99.84 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.84 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.84 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.83 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.83 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.82 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.82 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.82 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.81 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.81 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.81 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.81 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.8 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.8 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.8 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.8 | |
| KOG0256|consensus | 471 | 99.79 | ||
| KOG0633|consensus | 375 | 99.79 | ||
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.78 | |
| KOG1368|consensus | 384 | 99.78 | ||
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.77 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.77 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.77 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.77 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.77 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.76 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.75 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.75 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.75 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.75 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.75 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.75 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.74 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.74 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.74 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.73 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.73 | |
| KOG0634|consensus | 472 | 99.72 | ||
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.72 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.72 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.72 | |
| KOG1358|consensus | 467 | 99.72 | ||
| PRK06460 | 376 | hypothetical protein; Provisional | 99.72 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.72 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.71 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.71 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.71 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.7 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.7 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.7 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.7 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.69 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.69 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.69 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.69 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.69 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.68 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.68 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.68 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.68 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.67 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.67 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.67 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.67 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.66 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.66 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.66 | |
| PLN02263 | 470 | serine decarboxylase | 99.66 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.66 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.66 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.65 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.65 | |
| KOG1357|consensus | 519 | 99.64 | ||
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.64 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.63 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.62 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.62 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.61 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.61 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.61 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.6 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.6 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.6 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.6 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.59 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.59 | |
| KOG2862|consensus | 385 | 99.59 | ||
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.58 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.58 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.57 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.57 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.57 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.56 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.56 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.56 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.55 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.55 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.53 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.52 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.47 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.44 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.44 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.4 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.4 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.39 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.39 | |
| KOG0053|consensus | 409 | 99.39 | ||
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.39 | |
| KOG0258|consensus | 475 | 99.35 | ||
| PLN02452 | 365 | phosphoserine transaminase | 99.32 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.3 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.28 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.28 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.24 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.23 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.22 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.2 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.17 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.14 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.14 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.1 | |
| KOG2040|consensus | 1001 | 99.09 | ||
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.08 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.04 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.03 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.0 | |
| KOG1383|consensus | 491 | 98.98 | ||
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.74 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.71 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 98.68 | |
| KOG3846|consensus | 465 | 98.64 | ||
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.62 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.61 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.6 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.53 | |
| KOG0628|consensus | 511 | 98.4 | ||
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.35 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.3 | |
| KOG1412|consensus | 410 | 98.26 | ||
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.22 | |
| KOG0629|consensus | 510 | 98.15 | ||
| KOG2467|consensus | 477 | 98.01 | ||
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.72 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.69 | |
| KOG1411|consensus | 427 | 97.65 | ||
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 97.29 | |
| KOG3843|consensus | 432 | 95.36 | ||
| KOG2040|consensus | 1001 | 89.6 |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-79 Score=556.07 Aligned_cols=382 Identities=31% Similarity=0.494 Sum_probs=354.2
Q ss_pred cccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q psy14484 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (430)
.++.|.+.|+++.+++|+ |+||.+|++||||.+|+++++|||+||.+++|+++|++++.+.++ .+.++...++++.
T Consensus 17 ~~~~Y~~~~~~~~~G~G~---~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn-~~~~~~~~~la~~ 92 (404)
T COG4992 17 LMPTYGRLPVVIVRGEGA---YVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSN-LFYNEPQAELAEK 92 (404)
T ss_pred hhcccCcCceeEEecccc---EEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccc-ccCChHHHHHHHH
Confidence 367789999999999888 799999999999999999999999999999999999999877654 6788999999999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
|.+..| ..++|+|+|||+|||+.|+|++|.|+. .+.+.+||.+.++|||+|++++++++.+.|++.|.|+.+++.+
T Consensus 93 L~~~s~-~~d~vff~NSGaEA~EaAiKlARk~~~---~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~ 168 (404)
T COG4992 93 LVELSP-FADRVFFCNSGAEANEAALKLARKYTG---DPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRH 168 (404)
T ss_pred HHhhCc-cccEEEEcCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCcee
Confidence 999997 799999999999999999999999873 2358899999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
+|+. |+++++++++ +++++||+|| +|+++|.++|+++|+++++++|++||++||+||||
T Consensus 169 vpfn-----------------Di~al~~ai~---~~taAvivEP-IQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ 227 (404)
T COG4992 169 VPFN-----------------DIEALEAAID---EDTAAVIVEP-IQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ 227 (404)
T ss_pred cCCC-----------------CHHHHHHHhc---cCeEEEEEec-ccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc
Confidence 8885 9999999996 5899999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 246 ~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
||+||||++|+++++++.|||++++|+|+|| +|||+++.++.+.+.+.+ ..|++||++||++|+++.++|+++
T Consensus 228 tG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG-~PigA~la~~~~~~~~~~------G~HgSTfGGNpLacAv~~a~l~~l 300 (404)
T COG4992 228 TGLGRTGKLFAYEHYGVEPDILTLAKALGGG-FPIGAMLATEEIASAFTP------GDHGSTFGGNPLACAVALAVLEVL 300 (404)
T ss_pred cCCCccchHHHHHHhCCCCCEEEeeccccCC-ccceeeEEchhhhhcCCC------CcccCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 799999999776766665 569999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEE
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYL 403 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~ 403 (430)
.++++.+++++++++|+++|+++ .+++.+..++|+|+|+++++. .+. .+..+.+.|.++|+++.+.+ +++||
T Consensus 301 ~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~-~~~-----~a~~~~~~~~~~gvL~~~a~~~ViR~ 374 (404)
T COG4992 301 LEEGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELK-EPY-----RARDIVRALREEGVLVLPAGPNVIRF 374 (404)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecceeEEEEEec-Ccc-----cHHHHHHHHHHCCeEEecCCCCeEEe
Confidence 99999999999999999999999 678888899999999999998 532 14679999999999998765 89999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.|++.+++|||++++++|++++....
T Consensus 375 ~PpL~i~~eei~~~~~~l~~~l~~~~ 400 (404)
T COG4992 375 LPPLVITEEEIDEALDALERALAAAS 400 (404)
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998653
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=552.53 Aligned_cols=410 Identities=43% Similarity=0.752 Sum_probs=376.9
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC-C
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-Y 92 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~ 92 (430)
+.++.+++|. |++|.||++|||..|+||++++||++|++.+|+++|+.++.+.+.....+.+..+|+++|++..| .
T Consensus 27 ~~~i~~aeG~---yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~ 103 (449)
T COG0161 27 PRVIVRAEGV---YLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEG 103 (449)
T ss_pred ceeeeeccee---EEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCC
Confidence 7889999887 89999999999999999999999999999999999999999887777888889999999999998 5
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch-hhhhccCCCeeEeCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK-EIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 171 (430)
++++|+|++|||||++.|+|++++|++.+|+|.|.++|+...+|||.+.+++++++.+..+ ..+.++..+..+++.|+.
T Consensus 104 ~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~ 183 (449)
T COG0161 104 GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYA 183 (449)
T ss_pred CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcc
Confidence 5999999999999999999999999999999999999999999999999999999965554 677778888889999988
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINK-GNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~-~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++... +.+..++ ..++++||+.+.++. +++++||+||++++.||+++|++.|+++++++|++|||+||+|||.+|||
T Consensus 184 y~~~~~~~~~~~~-~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFG 262 (449)
T COG0161 184 YRRGFFGEGDEEF-AEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFG 262 (449)
T ss_pred cccCCCCCChHHH-HHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCC
Confidence 76654 5556666 678999999999985 89999999995555599999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|++|++++++++||++|++|+|+|||+|+|++++++++.+.+..+. ...+.|+.||++||++|++|++.|+++++++
T Consensus 263 RTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TYsghPlacAaAla~L~i~e~e~ 341 (449)
T COG0161 263 RTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTYSGNPLACAAALANLDILEEED 341 (449)
T ss_pred cCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhccc-CCeeccCCccccCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999998732 7889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHc-hhcCCCeeeEeecceEEEEEEeecCCccch----hHHHHHHHHHHHCCcEEeecCCEEEEe
Q psy14484 330 ILQRISQDMKKITKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIE----TFSKKFFVAALKNELLLRPIGNTVYLM 404 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~a~~~~~~l~~~Gv~~~~~~~~lR~~ 404 (430)
+.+++++.+.+|.++|++ +..+|.+.++|+.|++.++++. .+..++. ....++...++++|++++|.++.+.++
T Consensus 342 l~~~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv-~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g~~i~~~ 420 (449)
T COG0161 342 LLERVAEIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELV-ADKATKTPFEARVGARVRAAALERGLLIRPLGDVIYLM 420 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEe-cccccccchhhhHHHHHHHHHHHCCeEEeecCCEEEEc
Confidence 999999999999999998 5777999999999999999999 7765553 235678888999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|++++|++||+++++++++++++..
T Consensus 421 PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 421 PPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-75 Score=547.71 Aligned_cols=398 Identities=33% Similarity=0.525 Sum_probs=358.7
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|+++.+++|+ |+||.|||+||||.+++++.++||+||+|++|+++|++++.+........+...+++++|.+.+|
T Consensus 37 ~~p~~~~ra~G~---~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p 113 (447)
T COG0160 37 RFPLVIVRAEGA---YLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAP 113 (447)
T ss_pred cCcceEEecccC---EEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCC
Confidence 588999999888 79999999999999999999999999999999999999988765545555899999999999998
Q ss_pred C-CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc-hhhhhccCCCeeEeCCC
Q psy14484 92 Y-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF-KEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~-~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 169 (430)
. ..+.++|++||+|||++|+|+++.++ ++..||.|.++|||+|.+++++++.... +..+.++..++.++|+|
T Consensus 114 ~~~~~~~~f~~sGaeA~E~AiKiAr~~T------gr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp 187 (447)
T COG0160 114 GSGLKKVFFGNSGAEAVEAAIKIARAYT------GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYP 187 (447)
T ss_pred cccCCeEEecCCcHHHHHHHHHHHHHHh------CCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCC
Confidence 6 57899999999999999999999997 8999999999999999999999887654 45677888889999999
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+.+++++....++.....++.+++.+... +.+++++|+|| +++++|.++||++|+++++++|++||++||+||||+
T Consensus 188 ~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~Ep-IQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQt 266 (447)
T COG0160 188 NPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEP-IQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQT 266 (447)
T ss_pred ccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 99999876554444444666777756554 56899999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||||||++|+++++++.||++|+||++++| +|+|++++++++++ +.. -.|++||.+||++++++.++|+.++
T Consensus 267 G~GRTG~~fa~E~~gv~PDivt~aK~ig~G-~Pl~avv~r~ei~~-~~~------g~~~~Tf~GNpva~Aaa~AvL~vie 338 (447)
T COG0160 267 GFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEIMD-WPP------GGHGGTFGGNPVACAAALAVLDVIE 338 (447)
T ss_pred CCCccccchhhhhcCCCCCEEEecccccCC-CceeEEeccHHhcc-cCC------cccCCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 79999999999988 544 3588999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeecC---C
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---N 399 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~~---~ 399 (430)
++++.++..+++++++++|+++ .++|.+.++||.|+|+++++. .+.. .....+..++++++++|+++..+| +
T Consensus 339 ~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v-~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G~~~n 417 (447)
T COG0160 339 EENLLERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELV-KDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGN 417 (447)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEe-cCCCCCCCCHHHHHHHHHHHHHcCCEEeccCCCCc
Confidence 9999999999999999999999 789999999999999999998 6533 233457899999999999998876 8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++||.|+++++++++|+++++|++++.++
T Consensus 418 viRi~PPL~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 418 VLRILPPLTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred EEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999875
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=536.00 Aligned_cols=412 Identities=53% Similarity=0.956 Sum_probs=366.1
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|+++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+.....+.++...+++++|.+..|.
T Consensus 36 ~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~ 112 (453)
T PRK06943 36 PLLPVARGEGA---WLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGG 112 (453)
T ss_pred CCceEEecccC---EEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCC
Confidence 47889998887 799999999999999999999999999999999999998766555567888999999999999875
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
..++++|++||+||++.|+|+++.++..+|.++|.+||.+.++|||.+.+++++++...++..|.++..+..++++|+..
T Consensus 113 ~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~ 192 (453)
T PRK06943 113 TLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDAR 192 (453)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCcc
Confidence 56899999999999999999999987777877899999999999999999999999888888888877777788888765
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
+.......+++..+++++++++++++++++++||+|| + ++++|+++|+++|+++|+++|++||++||+|||++||||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEP-vvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt 271 (453)
T PRK06943 193 GARPGETAADVAARALADVRRLFAERAGKIAALIVEP-LVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT 271 (453)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEec-cccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCC
Confidence 5554444556667889999999987778999999999 6 9999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|.+|+++++++.||++++||+|+||++|+|++++++++++.+........+.|++||++||++|+++.++|++++++++.
T Consensus 272 G~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~ 351 (453)
T PRK06943 272 GTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVL 351 (453)
T ss_pred cchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999997799999999999988764211224568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCH
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNK 411 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~ 411 (430)
+++++++++|+++|+++..++.+..+++.|+++++++. .+......++..+.+.++++|+++.+.++.+||+|++++|+
T Consensus 352 ~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gvel~-~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~l~~~Ppl~it~ 430 (453)
T PRK06943 352 ARNARKSARLRAALAPLAAHPQVRHLRQRGTIFAFDVA-LDGDAARTFSRRFFEAALERELLLRPIGTTVYLMPPYVLDD 430 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEeccccEEEEEEc-cCCCcchHHHHHHHHHHHHCCcEEEecCCEEEEeCCCcCCH
Confidence 99999999999999998667788899999999999997 54322233467889999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14484 412 NEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~~~ 429 (430)
+||++++++|+++++++.
T Consensus 431 ~eid~~~~~l~~al~~~~ 448 (453)
T PRK06943 431 DEIAWLAERTRATLDATL 448 (453)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998763
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=530.17 Aligned_cols=412 Identities=27% Similarity=0.478 Sum_probs=358.1
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|+++.+++|. |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+... ..+.++...+++++|.+..|
T Consensus 28 ~~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p 104 (459)
T PRK05965 28 GVTVLASAKGA---TLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAP 104 (459)
T ss_pred CCceEEeeeEe---EEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCC
Confidence 46899999887 899999999999999999999999999999999999998765432 24678888999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.+++.+|.++|.+||.++++|||.+.+++++++.+.++..+.+.......++.|..
T Consensus 105 ~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~ 184 (459)
T PRK05965 105 GSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYP 184 (459)
T ss_pred CCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcc
Confidence 67789999999999999999999999877887789999999999999999988888877777777766666667777765
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++.+.+.+.++....+++++++.+.++ ++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEP-iqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGR 263 (459)
T PRK05965 185 YRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGR 263 (459)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCcc
Confidence 555443444445556788999999765 37899999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
+|.+|+++++++.||++|++|+|+||++|+|++++++++++.+.... ....+.|++||++||++|+++.++|+++++++
T Consensus 264 tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~ 343 (459)
T PRK05965 264 TGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGG 343 (459)
T ss_pred CchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999779999999999998875411 11235689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecC-CEEE
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIG-NTVY 402 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~-~~lR 402 (430)
+.+++++++++|+++|+++..++.+..+++.|+++++++. .+.... ...+..+.+.++++|+++.+.+ +++|
T Consensus 344 l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~ 422 (459)
T PRK05965 344 LLANGQKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELV-ADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLG 422 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEe-ccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEE
Confidence 9999999999999999998667888899999999999997 542111 1245778899999999998876 6799
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+.|++++|++||++++++|++++.++.
T Consensus 423 ~~PpL~it~~ei~~~~~~l~~~l~~~~ 449 (459)
T PRK05965 423 FAPALCCTEGEFDLIFERTRKTLDDVL 449 (459)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998763
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=527.26 Aligned_cols=411 Identities=25% Similarity=0.419 Sum_probs=358.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|+++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+... ..+.++...+++++|.+..|
T Consensus 32 ~p~~i~~a~G~---~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p 108 (461)
T PRK07482 32 PGRIVEGGEGI---RITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAP 108 (461)
T ss_pred CCeeEEeeeee---EEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCC
Confidence 37899999887 899999999999999999999999999999999999998764432 35778999999999999988
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.++..+|.++|.+||.+.++|||.+.++.++++.+.++..+.++...+.++++|..
T Consensus 109 ~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (461)
T PRK07482 109 AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHY 188 (461)
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCcc
Confidence 66889999999999999999999998877787789999999999999999999999888888888887777777777765
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINK-GNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++.+. +...+.+...+++++++.+.+. ++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++|||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP-vqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfG 267 (461)
T PRK07482 189 YRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEP-VLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFG 267 (461)
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 55432 2233445566889999988643 57899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|+|.+|+++++++.||++|++|+|+||+.|+|++++++++++.+... .....+.|++||++||++|+++.++|+.++++
T Consensus 268 RtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~ 347 (461)
T PRK07482 268 RLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERE 347 (461)
T ss_pred cCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999977999999999998877531 11234568999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeec--CC
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPI--GN 399 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~--~~ 399 (430)
++.+++++++++|+++|+++ ..++.+..+++.|+|+++++. .+.... ...+..+++.|+++|+++.+. ++
T Consensus 348 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~ 426 (461)
T PRK07482 348 NLVGNAAEVGAYFRARLRAAFGDHPLVGEVRGVGMLAAVEFV-ADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGD 426 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeceeEEEEEec-cCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCC
Confidence 99999999999999999988 678888899999999999997 532211 123467899999999998654 68
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+||.|++++|++||++++++|+++++++
T Consensus 427 ~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 427 ILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-69 Score=525.06 Aligned_cols=412 Identities=42% Similarity=0.769 Sum_probs=361.2
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC-
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY- 92 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~- 92 (430)
+..+.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+.+|.
T Consensus 47 ~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~ 123 (472)
T PRK08742 47 LVPIARGEGA---WLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQ 123 (472)
T ss_pred CeeEEecccC---EEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCc
Confidence 3678888777 899999999999999999999999999999999999988766555567788999999999999873
Q ss_pred ----CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 93 ----KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 93 ----~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
+.++++|++||+||++.|+|+++.++..+|.++|.+||.+.++|||.+.+++++++.+.++..|.+...++.++++
T Consensus 124 ~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~ 203 (472)
T PRK08742 124 DGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPS 203 (472)
T ss_pred ccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCC
Confidence 3579999999999999999999999877787789999999999999999999999887788888887777788888
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
|+.++...+....+....+++.+++.+.+.++++++||+||++++++|.++|+++|+++|+++|++||++||+|||++||
T Consensus 204 p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGf 283 (472)
T PRK08742 204 PDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGF 283 (472)
T ss_pred CCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 87666554444445555678999999986667999999999449999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
||+|.+|+++++++.||++++||+|+||++|+|++++++++++.+........+.|++||++||++|+++.++|++++++
T Consensus 284 GRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~ 363 (472)
T PRK08742 284 GRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADD 363 (472)
T ss_pred CCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999997799999999999887753111234678999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
++.++++++++++++.++.+.+++.+.++++.|+++++++. .+.... ...+..+.+.++++|+++.+.++++|
T Consensus 364 ~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~~giel~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~vi~ 442 (472)
T PRK08742 364 DVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMVVAFELT-RGGNKRTPFPPAARVGLHAYRAALARGVVLRPLGDVLY 442 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceEEEEEec-cCccccccCCchhHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 99999999999999888877678888899999999999997 543211 12346788899999999999889999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|.|++++|++||++++++|++++.++.
T Consensus 443 ~~PpL~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 443 WMPPYCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=523.06 Aligned_cols=411 Identities=48% Similarity=0.860 Sum_probs=363.9
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
++++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+..|.+
T Consensus 30 ~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~ 106 (466)
T PRK07030 30 LIPIRRGEGV---WLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG 106 (466)
T ss_pred CceEEeeecc---EEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCC
Confidence 3678888887 8999999999999999999999999999999999999987665555678899999999999998766
Q ss_pred CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCC
Q psy14484 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 94 ~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
.++++|++||+||++.|+|+++.+++.+|.+++.+||.+.++|||.+.+++++++.+.++..+.+...+..++|+|+.++
T Consensus 107 ~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~ 186 (466)
T PRK07030 107 LSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYL 186 (466)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccc
Confidence 78999999999999999999999887778778999999999999999999999888777877877777777888887666
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~ 253 (430)
...+.....+..++++++++.+.++++++++||+||++++++|.++|+++|+++|+++|++||++||+|||++||||+|.
T Consensus 187 ~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~ 266 (466)
T PRK07030 187 RPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT 266 (466)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc
Confidence 55555555667788999999998777899999999944999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 254 ~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
+|+++++++.||+++++|+|+||++|+|++++++++++.+... .....+.|++||++||++|+++.++|++++++++.+
T Consensus 267 ~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~ 346 (466)
T PRK07030 267 MFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIE 346 (466)
T ss_pred chHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999977999999999999887531 112346799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEEEeCC
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVYLMPP 406 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~ 406 (430)
++++++++|+++|+++.+++.+..+++.|+++++++. .+.... ...+..+.+.++++|+++.+.++.+||.|+
T Consensus 347 ~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~i~~~Pp 425 (466)
T PRK07030 347 NNRALARRMAEATAHLADHPHVAEVRQTGMILAIEMV-QDKASKTPYPWQERRGLKVYQHALERGALLRPLGSVVYFLPP 425 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEec-cCccccccCcchhHHHHHHHHHHHHCCeEEEecCCEEEEECC
Confidence 9999999999999998667888899999999999996 533211 112357888999999999988889999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++|++||++++++|+++++++
T Consensus 426 l~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 426 YVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-68 Score=520.18 Aligned_cols=408 Identities=29% Similarity=0.488 Sum_probs=352.4
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
|+++.+++|+ |+||.|||+||||.+++|+.+|||+||+|.+|++++++++.+... .+.++...+++++|.+.+| .
T Consensus 30 p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~lae~l~~~~~-~ 104 (451)
T PRK07678 30 TMVVAKAEGA---WVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL-TQSHEPAIKLAEKLNEWLG-G 104 (451)
T ss_pred CeeEEeeeee---EEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc-ccCCHHHHHHHHHHHHhCC-C
Confidence 7889998887 899999999999999999999999999999999999998765432 4678888999999999987 3
Q ss_pred CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCC
Q psy14484 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 94 ~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
.++++|++||+||++.|+|+++.+++.+|.++|.+||.+.++|||++.+++++++.+.++..+.++..++..++.|+.++
T Consensus 105 ~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (451)
T PRK07678 105 EYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYR 184 (451)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCcccc
Confidence 46999999999999999999999987788888999999999999999999999888777777777777777888877666
Q ss_pred CCCCCChhHHHHHHHHHHHHHHH-hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 174 INKGNSANEIARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~-~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
.+.+...+......++.+++.++ .+++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++||||+|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EP-iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG 263 (451)
T PRK07678 185 MPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEP-IITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG 263 (451)
T ss_pred ccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc
Confidence 54333222233334566788886 3357899999999 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+|+++++++.||++|+||+|+||++|+|++++++++++.+........+.|++||++||++|+++.++|+.++++++.+
T Consensus 264 ~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~ 343 (451)
T PRK07678 264 KAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIE 343 (451)
T ss_pred hhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999978999999999999887642212346789999999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc----chhHHHHHHHHHHHCCcEEeec-------CCE
Q psy14484 333 RISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ----IETFSKKFFVAALKNELLLRPI-------GNT 400 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~a~~~~~~l~~~Gv~~~~~-------~~~ 400 (430)
++++++++|+++|+++ .+++.+..+++.|+|+++++. .+... ....+..++..|+++|+++.+. ++.
T Consensus 344 ~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~-~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~ 422 (451)
T PRK07678 344 RSAQLGELLLEQLKEELGEHPLVGDIRGKGLLVGIELV-NDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNV 422 (451)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEeeceEEEEEEe-cCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCE
Confidence 9999999999999776 677888899999999999996 43221 1233578899999999999764 268
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+|++++|++||++++++|++++.++
T Consensus 423 lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 423 LTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999764
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=519.32 Aligned_cols=411 Identities=31% Similarity=0.532 Sum_probs=357.8
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|+++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+... ....++...+++++|.+.+|
T Consensus 24 ~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~ 100 (449)
T PRK07481 24 PPIIIVRGDGV---YVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFA 100 (449)
T ss_pred CCceEEecccc---EEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcC
Confidence 57899999887 899999999999999999999999999999999999998765432 25678999999999999983
Q ss_pred -CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 92 -YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 -~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
.+.++++|++||+||++.|+|+++.+++.+|.++|.+||.+.++|||++.+++++++.+.++..+.+...++.+++.|+
T Consensus 101 ~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~ 180 (449)
T PRK07481 101 PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPW 180 (449)
T ss_pred CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCc
Confidence 3567999999999999999999999988788778999999999999999999999887777777777777787888887
Q ss_pred CCCCCCC-CChhHHHHHHHHHHHHHHH-hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKG-NSANEIARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~-~~~~~~~~~d~~~le~~l~-~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++.+++ .+.+.......+.+|+.+. ++++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++||
T Consensus 181 ~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEP-vqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGf 259 (449)
T PRK07481 181 LYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEP-VQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGF 259 (449)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEec-ccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCc
Confidence 6665554 2344444445677788776 3357899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
||+|.+|+++.+++.||++++||+++||++|+|++++++++++.+.... ....+.|++||++||++++++.++|+++++
T Consensus 260 GRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~ 339 (449)
T PRK07481 260 GRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVR 339 (449)
T ss_pred CcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999789999999999998875411 112456899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc------chhHHHHHHHHHHHCCcEEeecCCE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPIGNT 400 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~a~~~~~~l~~~Gv~~~~~~~~ 400 (430)
+++.+++++++++|+++|+++ .+++.+..+++.|+|+++++. .+... ....+..+.+.|+++|+++.+.++.
T Consensus 340 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~ 418 (449)
T PRK07481 340 EDLPANAAKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLV-ADKATREPIDPSKGYANAVADVARENGVLVRPSGTK 418 (449)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEec-ccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCE
Confidence 999999999999999999998 568888899999999999996 43211 1234567888999999999988888
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+|++++|++||++++++|++++.++
T Consensus 419 i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 419 IILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999875
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=521.37 Aligned_cols=414 Identities=39% Similarity=0.727 Sum_probs=364.8
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|+++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+.+|
T Consensus 37 ~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p 113 (460)
T PRK06916 37 EDPLIIERGEGR---KLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVP 113 (460)
T ss_pred CCCeeEEecccc---EEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC
Confidence 358899999888 79999999999999999999999999999999999999876554446778999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
...++++|++||+||++.|+|+++.+++.+|.++|.+||.+.++|||.+.+++++++.+.++..|.+.......+|+|+.
T Consensus 114 ~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~ 193 (460)
T PRK06916 114 EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYT 193 (460)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcc
Confidence 66789999999999999999999998877777789999999999999999999999888888888877777778888876
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
++.+.+.+.+.+...+++++++.++++++++++||+||++++++|.++|+++|+++|+++|++||++||+|||++||||+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt 273 (460)
T PRK06916 194 YRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT 273 (460)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC
Confidence 66554444555666789999999987778999999999339999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
|.+|+++++++.||++++||+|+||++|+|++++++++++.+.... ....+.|++||++||++++++.++|+.++++++
T Consensus 274 G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l 353 (460)
T PRK06916 274 GKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNL 353 (460)
T ss_pred chhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999999779999999999988775310 123456889999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEEEe
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVYLM 404 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR~~ 404 (430)
.++++++++++++.|+++..++.+..+++.|+|+++++. .+.... ...+..+++.|+++|+++.+.++.+||.
T Consensus 354 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~l~~~ 432 (460)
T PRK06916 354 IEQVARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELV-KNKETKEPFEWTERVGVQVCKRSRELGMLTRPLGNTIVFM 432 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEee-cccccccCCCchhhHHHHHHHHHHHCCeEEEecCCEEEEe
Confidence 999999999999999999557888899999999999997 543211 1224678899999999999988999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|++++|++||++++++|++++.++-
T Consensus 433 Ppl~it~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06916 433 PPLASTIDELDEMLRILYKAISDVT 457 (460)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=517.08 Aligned_cols=412 Identities=29% Similarity=0.509 Sum_probs=354.1
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
...|+++.+++|. |+||.||++||||.+++|+.++||+||+|.++++++++++.+.....+.++...+++++|.+..
T Consensus 10 ~~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~ 86 (443)
T PRK07483 10 RATLPVAVAGEGI---YLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAA 86 (443)
T ss_pred cCCCceEEeceEE---EEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC
Confidence 4468999998887 8999999999999999999999999999999999999987544333466888899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
|.+.++++|++||+||++.|+|+++.+++.+|.++|.+||.+.++|||++.+++++++.+.++..+.+...+..+++.|.
T Consensus 87 p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~ 166 (443)
T PRK07483 87 PAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCY 166 (443)
T ss_pred CCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCc
Confidence 76678999999999999999999999987778778999999999999999999999987777777777766677777665
Q ss_pred CCCCCC-CCChhHHHHHHHHHHHHHHHh-CCCCeEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 171 SRNINK-GNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 171 ~~~~~~-~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
.++... ....+++....++++++++.. .++++++||+|| +++ ++|.++|+++|+++|+++|++||++||+|||++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEP-iqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 245 (443)
T PRK07483 167 AYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAET-VVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCG 245 (443)
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC-cccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeC
Confidence 444421 222333444456788877753 357899999999 998 5899999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.+|+++++++.||++++||+++||+.|+|++++++++++.+.. ....+.|++||++||++++++.++|+++++
T Consensus 246 fGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~--~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~ 323 (443)
T PRK07483 246 MGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIAD--GSGFFQHGHTYLGHATACAAALAVQRVIAE 323 (443)
T ss_pred cccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHHHhc--CCCccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999996699999999999888764 123356899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc------chhHHHHHHHHHHHCCcEEeec---
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
+++.+++++++++|+++|+++ .+++.+..+++.|+|+++++. .+... ....+..+++.++++|+++.+.
T Consensus 324 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~ 402 (443)
T PRK07483 324 DGLLANVRARGEQLRARLRERLGQHPHVGDIRGRGLFVGVELV-ADRATKAPFDPALKLHARIKREAMARGLMVYPMGGT 402 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEeecccEEEEEEe-ecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcc
Confidence 999999999999999999987 678888899999999999996 43211 1123567899999999999764
Q ss_pred -----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 -----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 -----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++.+||.|++++|++||++++++|++++.+++
T Consensus 403 ~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~ 439 (443)
T PRK07483 403 IDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAAL 439 (443)
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999998865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=518.99 Aligned_cols=412 Identities=28% Similarity=0.494 Sum_probs=352.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhc
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~ 90 (430)
+.|.++.+++|+ |+||.|||+||||.+++|+.+|||+||+|.+|++++++++.+... ..+.++...+++++|.+.+
T Consensus 70 ~~p~~i~~~~G~---~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~ 146 (504)
T PLN02760 70 LEPLVIEKSEGS---YVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMF 146 (504)
T ss_pred CCCceEEeeeee---EEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhc
Confidence 367899999887 899999999999999999999999999999999999998765432 2467888999999999985
Q ss_pred -CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 91 -QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 91 -~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
+.+.++++|++||+|||+.|+|+++.++..+|.+++.+||.++++|||++.+++++++.+.++..+.+....+.++++|
T Consensus 147 ~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p 226 (504)
T PLN02760 147 TARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP 226 (504)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC
Confidence 4456789999999999999999999987777877889999999999999999999888776666666555556677777
Q ss_pred CCCCCCC-CCChhHHHHHHHHHHHHHHHh-CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 170 DSRNINK-GNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
+.++... ....+++.....++|++.+.. .++++++||+|| +++++|+++|+++|+++|+++|++||++||+|||+||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EP-v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TG 305 (504)
T PLN02760 227 HYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICA 305 (504)
T ss_pred cccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhC
Confidence 6555421 122333333455677777753 356899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
|||+|.+|+++++++.||++||||+++||++|+|++++++++++.+... +....+.|++||+++|++|+++.++|++++
T Consensus 306 fGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~ 385 (504)
T PLN02760 306 FGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYK 385 (504)
T ss_pred CcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999978999999999999887541 112245689999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCE
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNT 400 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~ 400 (430)
++++.+++++++++|+++|+++.+++.+..++|.|+++++++. ++.... ...+..+++.|+++|+++.+.++.
T Consensus 386 ~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~ 464 (504)
T PLN02760 386 ERNIPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFV-DNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAGDN 464 (504)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEe-cCCcccccccchhHHHHHHHHHHHhCCcEEEecCCE
Confidence 8999999999999999999998667888899999999999997 543211 123567889999999999988889
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+|++++|++||++++++|++++.++
T Consensus 465 lrl~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 465 IMMSPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-67 Score=513.41 Aligned_cols=409 Identities=28% Similarity=0.474 Sum_probs=351.1
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|+++.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+... +.+.++...+++++|.+.+|
T Consensus 32 ~~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p 108 (456)
T PRK07480 32 GSRVITRAEGV---YLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAP 108 (456)
T ss_pred CCceEEeceee---EEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCC
Confidence 46889998777 899999999999999999999999999999999999998755432 25678999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.+++.+|.++|.+||.+.++|||.+.+++++++.+.++..+.+.......+++|..
T Consensus 109 ~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~ 188 (456)
T PRK07480 109 PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYW 188 (456)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcc
Confidence 66789999999999999999999999877787789999999999999999999988766555555554556667777766
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++...+.+.+++....++.+++.+.+. ++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EP-iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 267 (456)
T PRK07480 189 FGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEP-IQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGR 267 (456)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 655443334444443467887666433 57899999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+|+++++++.||+++|||+++||++|+|++++++++++.+.. ....+.|++||++||++|+++.++|++++++++
T Consensus 268 tG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~--~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l 345 (456)
T PRK07480 268 TGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIE--EGGEFNHGFTYSGHPVAAAVALANLRILRDEGI 345 (456)
T ss_pred CcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHHhc--CCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999997799999999999888742 123456899999999999999999999998999
Q ss_pred HHHH-HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEEE
Q psy14484 331 LQRI-SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVYL 403 (430)
Q Consensus 331 ~~~~-~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR~ 403 (430)
.+++ ++++++|+++|+++.+++.+..+++.|+|+++++. ++.... ......+.+.|+++|+++.+.++.+||
T Consensus 346 ~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~l~~ 424 (456)
T PRK07480 346 VERVRDDTGPYLQKRLRELADHPLVGEVRGVGLVGAIELV-KDKATRERFEAGGGVGTICRDHCFANGLIMRAVGDRMII 424 (456)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeEEeecceEEEEEe-ccccccccCcchhhHHHHHHHHHHHCCcEEeecCCEEEE
Confidence 9999 59999999999988667888899999999999996 432211 112356788899999999888889999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|++.+|++||++++++|++++.++
T Consensus 425 ~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 425 SPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=512.04 Aligned_cols=410 Identities=30% Similarity=0.479 Sum_probs=355.3
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.| ++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+.....+.++...+++++|.+.+|
T Consensus 13 ~~p-~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p 88 (447)
T PRK06917 13 PYP-VISHGKGV---YLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSP 88 (447)
T ss_pred CCC-eEEeeeee---EEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCC
Confidence 345 68888776 89999999999999999999999999999999999999875444345678889999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
...++++|++||+||++.|+|+++.+++.+|.++|.+|+.+.++|||++.+++++++.+.++..|.++......++.|..
T Consensus 89 ~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~ 168 (447)
T PRK06917 89 GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYC 168 (447)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcc
Confidence 56689999999999999999999999877888899999999999999999999888876666666666556666666665
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccC-CCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCA-GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~-~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++.+.+...+.+..++++.+++.++++. +++++||+|| ++++ +|+++|+++|+++|+++|++||+++|+|||++|||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EP-i~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfG 247 (447)
T PRK06917 169 YRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEP-IIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLG 247 (447)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEec-cccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcC
Confidence 5555445555666778999999998763 5899999999 8874 77899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+|+++++++.||++++||+++||++|+|++++++++++.+.. ..+.+.+++||++||++++++.++|+.+++++
T Consensus 248 RtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~--~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~ 325 (447)
T PRK06917 248 RTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILR--GSRSIMSGHTLSANPLSAATALAVLEYMEKHN 325 (447)
T ss_pred cccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhc--cCcccccccCCCCCHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999997799999999999988764 12345688999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc------chhHHHHHHHHHHHCCcEEeec-----
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPI----- 397 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~a~~~~~~l~~~Gv~~~~~----- 397 (430)
+.+++++++++|++.|+++ .+++.+..+++.|+|+++++. .+... ....+..+++.|+++|+++.+.
T Consensus 326 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~ 404 (447)
T PRK06917 326 LPEKAAEKGEYLIKGLQKVQQQSTIIGDVRGKGLLIGVEFV-ADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQD 404 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeecceEEEEEEe-ccCCcCCCCcchhHHHHHHHHHHHhCCcEEEecccccC
Confidence 9999999999999999999 568888899999999999996 43211 1134578899999999999875
Q ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++.+|++|++++|++||++++++|++++.++.
T Consensus 405 g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~ 439 (447)
T PRK06917 405 GKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMM 439 (447)
T ss_pred CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999998763
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=512.89 Aligned_cols=411 Identities=27% Similarity=0.468 Sum_probs=355.7
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCC-CCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|+++++.++.+...+. ..++...+++++|.+..|
T Consensus 33 ~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p 109 (466)
T PRK07036 33 GSLVIVEAEGI---YVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAP 109 (466)
T ss_pred CCceEEeCcee---EEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCC
Confidence 47899999887 89999999999999999999999999999999999999876544433 678899999999999988
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.++..+|.++|.+||.+.++|||++.+++++++.+.++.+|.+....+.+++.|+.
T Consensus 110 ~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (466)
T PRK07036 110 GDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNP 189 (466)
T ss_pred CCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcc
Confidence 66789999999999999999999998777777788999999999999999999998888788777777666777888876
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHh-CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++.+.+.....+....++.+++.+.. .++++++||+|| +++++|.++|+++|+++|+++|++||+++|+|||++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EP-v~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGR 268 (466)
T PRK07036 190 YRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEP-ILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGR 268 (466)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCc
Confidence 65544433334444456677777764 357899999999 9999999999999999999999999999999999999999
Q ss_pred cccccccc-cCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 251 TGKFFACE-HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 251 ~g~~~~~~-~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+|++|+++ .+++.||++++||+++||++|+|++++++++++.+... .....+.|++||++||++|+++.++|++++++
T Consensus 269 tG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~ 348 (466)
T PRK07036 269 LGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMERE 348 (466)
T ss_pred CchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 99988887 78999999999999999977999999999999887531 01123568899999999999999999999889
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCcc------chhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
++.+++++++++|+++|+++.+++.+..+++.|+++++++. .+... ....+..+.+.|+++|+++.+.++.+|
T Consensus 349 ~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~ 427 (466)
T PRK07036 349 GLCEHVREVGPYFEERLASLRELPLVGDVRGDHLMACVECV-ADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHLCV 427 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEc-cCccccCCCCchhHHHHHHHHHHHHCCcEEeecCCEEE
Confidence 99999999999999999988667888899999999999997 53221 122456788899999999998888899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|+|++++|++||++++++|++++.++
T Consensus 428 l~Ppl~it~~~id~~~~~l~~al~~~ 453 (466)
T PRK07036 428 LSPPLIITRAQIDEIVAILRAAIEET 453 (466)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=511.01 Aligned_cols=412 Identities=28% Similarity=0.485 Sum_probs=355.2
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC-CCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++.+++|. |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.... .+.++...+++++|.+.+|
T Consensus 30 ~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p 106 (460)
T PRK06105 30 GPLVIERGEGI---YVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAP 106 (460)
T ss_pred CCceEEeeeEE---EEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCC
Confidence 47889998777 8999999999999999999999999999999999999987644322 4678888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||+++|+|+++.+++.+|.++|.+||.+.++|||++.++.++++.+.++..+.+....+.++++|+.
T Consensus 107 ~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~ 186 (460)
T PRK06105 107 VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHY 186 (460)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcc
Confidence 66789999999999999999999988777777789999999999999999999888877677777777677778888865
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINK-GNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++... ....+.+...+++++++.+... ++++++||+|| +++++|.+.|+++|+++|+++|++||+++|+||||+|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEP-iqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~G 265 (460)
T PRK06105 187 YRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEP-VMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFG 265 (460)
T ss_pred cccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCC
Confidence 55422 1222344445677888888543 46899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|+|++|+++++++.||++++||+|+||++|+|++++++++++.+.... ....+.|++|+++||++++++.++|++++++
T Consensus 266 RtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~ 345 (460)
T PRK06105 266 RTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEER 345 (460)
T ss_pred cCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999779999999999988775411 1123558999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
++.+++++++++|+++|+++.+++.+..+++.|+++++++. .+.... ...+..+.+.++++|+++.+.++.+|
T Consensus 346 ~l~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~g~~i~ 424 (460)
T PRK06105 346 DLVGNAAERGARLQARLRALADHPLVGEVRGVGLIAAVELV-ADKATKTPFEPPGKVGARANAAAHEHGVISRAMGDTLA 424 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEe-cCcccCCCCCchhHHHHHHHHHHHHCCeEEEecCCEEE
Confidence 99999999999999999999667888899999999999996 432211 22346788899999999998889999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++++|++||++++++|++++.++.
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~~ 451 (460)
T PRK06105 425 FCPPLIITAAQVDEMVDRFGRALDDVA 451 (460)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998763
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-66 Score=505.74 Aligned_cols=413 Identities=27% Similarity=0.453 Sum_probs=353.6
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+.......++...+++++|.+.+|
T Consensus 27 ~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p 103 (442)
T PRK13360 27 KAPRLLVAAKGM---YYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAP 103 (442)
T ss_pred CCCceEEeeeee---EEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCC
Confidence 457888998777 89999999999999999999999999999999999999876555445678889999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.+++.+|.++|.+||++.++|||++.+++++++.+.++..|.+....+.++|++..
T Consensus 104 ~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~ 183 (442)
T PRK13360 104 GGLNHVFFTNSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLD 183 (442)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCch
Confidence 66789999999999999999999998776766678899999999999999999999887777777766666667776642
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 -RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 -~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++..+..........+++++++.+... ++++++|++|| +++++|.+.|+++|+++|+++|++||++||+||||+|||
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEp-i~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~G 262 (442)
T PRK13360 184 LARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEP-VAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFG 262 (442)
T ss_pred hhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 333332222333444678888888755 46899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCC-cccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|+|.+|+++++++.||+++|||+++||++|+|++++++++++.+..... ...+.+++||+++|++++++.++|++++++
T Consensus 263 rtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~ 342 (442)
T PRK13360 263 RLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYERE 342 (442)
T ss_pred CCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999997899999999999887754111 112458899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 408 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~ 408 (430)
++.++++++++++++.|+++..++.+.++++.|+++.+++. .........+..+.+.|+++||++.+.++.+||+|++.
T Consensus 343 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~-~~~~~~~~~~~~~~~~l~~~Gvl~~~~~~~lr~~Ppl~ 421 (442)
T PRK13360 343 GLLTRAARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELA-PRDGKPGKRAYEVFLKCFEKGLMIRYTGDILALSPPLI 421 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEe-cCCCCcchhHHHHHHHHHHCCcEEEecCCEEEEeCCCc
Confidence 99999999999999999988557778889999999999886 43221222346788899999999988888999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+|++||++++++|++++.+++
T Consensus 422 ~t~~eid~~~~~l~~~l~~~~ 442 (442)
T PRK13360 422 IEEAQIDELFDILAQALKETI 442 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998874
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=505.44 Aligned_cols=412 Identities=27% Similarity=0.476 Sum_probs=354.5
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ |+||.||++||||.+++|+.+|||+||+|.++++++++++.+.....+.++...+++++|.+.+|
T Consensus 30 ~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p 106 (445)
T PRK09221 30 AAPRLLVSAEGM---YYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAP 106 (445)
T ss_pred CCCceEEecccc---EEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 457899999887 89999999999999999999999999999999999999876655545778889999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD- 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 170 (430)
.+.++|+|++||+||++.|+|+++.+++.+|.+++.+||.+.++|||.+.+++++++.+.++..|.+...+..++++|.
T Consensus 107 ~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (445)
T PRK09221 107 GGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLD 186 (445)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCcc
Confidence 5678999999999999999999999987777767889999999999999999999887777777777666677777664
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
.++.............+++++++.++.+ .+++++||+|| +++++|.+.|+++|+++|+++|++||++||+||||+|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Ep-v~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~G 265 (445)
T PRK09221 187 LPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEP-MAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFG 265 (445)
T ss_pred ccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCC
Confidence 3333332333333344567888888765 37899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|+|.+|+++++++.||++++||+++||++|+|++++++++++.+.... ....+.|++||+++|++++++.++|++++++
T Consensus 266 RtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~ 345 (445)
T PRK09221 266 RLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREE 345 (445)
T ss_pred cCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999889999999999988775410 0113458899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 408 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~ 408 (430)
++.+++++++++|+++|+++..++.+..+++.|++.++++. .........+..+.+.|+++|+++.+.++.+||+|+++
T Consensus 346 ~l~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~-~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~lr~~Ppl~ 424 (445)
T PRK09221 346 DLFERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELA-PRPGAPGARGYEAFMKCFEKGLLVRYTGDTIALSPPLI 424 (445)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEe-cccccccchHHHHHHHHHHCCeEEeecCCEEEEECCcc
Confidence 99999999999999999988667778899999999999987 42211111245788999999999988889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|++||++++++|++++.++
T Consensus 425 ~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 425 IEKAQIDELVDALGDALRAV 444 (445)
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999875
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=506.45 Aligned_cols=408 Identities=27% Similarity=0.442 Sum_probs=348.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++.+++|+ |+||.|||+||||.+++++.+|||+||+|++|++++++++.+... ....++...+++++|++.+|
T Consensus 36 ~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p 112 (460)
T PRK12403 36 GPRVMVRGEGL---HLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLP 112 (460)
T ss_pred CCceEEeceee---EEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCC
Confidence 47899999887 899999999999999999999999999999999999998765433 24567889999999999997
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
...++++|++||+|||+.|+|+++.++..+|++++.+|+.+..+|||++.+++++++.+.++. +.+...++.+++.|..
T Consensus 113 ~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~-~~~~~~~~~~~~~p~~ 191 (460)
T PRK12403 113 GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHE-MGGLIPDVAHIDEPYW 191 (460)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccc-cCCCCCCCEEeCCCcc
Confidence 567899999999999999999999987777766678899999999999999999988665544 3455566677777766
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHh-CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++.+.+....++...+++++++.+.+ .++++++||+|| +++++|.+.|+++|+++|+++|++||++||+|||++||||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Ep-v~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR 270 (460)
T PRK12403 192 YANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEP-FQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGR 270 (460)
T ss_pred cccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 55443333344544456778776643 346899999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+|+++++++.||++++||+|+||++|+|++++++++++.+.. ..+.+.|++||++||++|+++.++|++++++++
T Consensus 271 tG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~--~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l 348 (460)
T PRK12403 271 TGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVE--QGGVFAHGLTYSGHPVAAAVAIANLKALRDEGV 348 (460)
T ss_pred CchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHHHhc--CCCccccCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999997799999999999888764 123456899999999999999999999998889
Q ss_pred HHHHH-HHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 331 LQRIS-QDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 331 ~~~~~-~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
.++++ +++++|++.|+++ .+++.+.++++.|+++++++. .+.... ......+.+.++++|+++.+.++.+|
T Consensus 349 ~~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~ 427 (460)
T PRK12403 349 VTRVKDDTGPYLQRCLREVFGDHPLVGEVQGAGLVAALQFA-EDKATRKRFANENDLAWRCRTIGFEEGVIIRSTLGRMI 427 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEeEeecceEEEEEEc-cCccccccccchhHHHHHHHHHHHhCCEEEEecCCEEE
Confidence 99996 9999999999888 678888999999999999996 432211 11234566778999999988778899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|+|++++|++|+++++++|++++.++
T Consensus 428 l~Ppl~it~~eid~~~~~l~~al~~~ 453 (460)
T PRK12403 428 MAPALVAGRAEIDELVDKTRIAVDRT 453 (460)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=506.02 Aligned_cols=399 Identities=25% Similarity=0.366 Sum_probs=343.9
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|+++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|+++++++........+.++...+++++|.+..|
T Consensus 44 ~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p 120 (464)
T PRK06938 44 RIPLALKRARGI---YVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLP 120 (464)
T ss_pred CCCceEEecccc---EEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCc
Confidence 468899999888 79999999999999999999999999999999999997543222235678888999999999887
Q ss_pred CCC---CeEEEc-CCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 92 YKL---GHCFYG-SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 92 ~~~---~~v~~~-~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
... ++++|+ +||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++...++..+.+...++.+++
T Consensus 121 ~~~~~~~~v~f~~~SGSEAve~AlklAr~~t------gr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~ 194 (464)
T PRK06938 121 EAFAREAKIQFCGPTGTDAVEAALKLVKTAT------GRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLP 194 (464)
T ss_pred ccccccceEEEeCCCcHHHHHHHHHHHHHhh------CCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeC
Confidence 443 367665 799999999999999885 8899999999999999999998887767777776666677888
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
+|+.++.+++...++....+++.+++.+.+.. +++++||+|| +++++|.++|+++|+++|+++|++||++||+|||
T Consensus 195 ~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EP-iqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV 273 (464)
T PRK06938 195 YPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEV-VQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEI 273 (464)
T ss_pred CCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 88776665544444444567899999997532 4799999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
++||||+|.+|+++++++.||++|+||+++|| +|+|++++++++ +.+.. ..|++||++||++|+++.++|++
T Consensus 274 ~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG-~PlsAv~~~~~~-~~~~~------~~~~~T~~gnpla~Aaa~a~L~~ 345 (464)
T PRK06938 274 QSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS-LPLAVVVYREWL-DTWQP------GAHAGTFRGNQMAMAAGSATLRY 345 (464)
T ss_pred ccCCCcCcHHHHHHhcCCCCCEEEeeccccCC-CceEEEeehhHh-hccCC------CCCCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 799999999885 54432 34889999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---------chhHHHHHHHHHHHCCcEE
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLL 394 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~a~~~~~~l~~~Gv~~ 394 (430)
++++++.+++++++++|+++|+++ .+++.+..++|.|+|+++++. ++... ....+..+++.|+++|+++
T Consensus 346 l~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~ 424 (464)
T PRK06938 346 IKEHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIV-DPQGEPDALGHPPANGELASLIQRECLRRGLIL 424 (464)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEec-cCcccccccccCCccHHHHHHHHHHHHHCCeEE
Confidence 998999999999999999999998 678888999999999999996 43211 1234567889999999999
Q ss_pred eec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 395 RPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 395 ~~~---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+. ++++||.|++++|++|+++++++|++++.++.
T Consensus 425 ~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 425 ELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred eecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 874 47999999999999999999999999998764
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-66 Score=503.60 Aligned_cols=400 Identities=27% Similarity=0.386 Sum_probs=343.3
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|+++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+... .+.++...+++++|.++.|
T Consensus 34 ~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~lae~L~~~~p 109 (451)
T PRK06062 34 INPMVIAGAEGS---YVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP-AHANDARSEAARLIAERAP 109 (451)
T ss_pred CCCceEEeceee---EEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC-ccCCHHHHHHHHHHHHhCC
Confidence 357889998887 899999999999999999999999999999999999998765543 6778999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++.+.++. ..+...++..++.|+.
T Consensus 110 ~~~~~v~f~~SGsEAve~AlklAr~~t------gr~~ii~~~~~yHG~t~~als~~~~~~~~~-~~~~~~~~~~~~~p~~ 182 (451)
T PRK06062 110 GDLSKVFFTNGGADANEHAVRMARLHT------GRPKVLSAYRSYHGGTGSAINLTGDPRRWP-NDTGRAGVVHFFGPFL 182 (451)
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHHhh------CCceEEEEeCCCCCCCHHHHhhcCCccccc-CCCCCCCCEEeCCCCc
Confidence 667899999999999999999999986 889999999999999999998887554332 2344455566666665
Q ss_pred CCCCCCC-ChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINKGN-SANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~~~-~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++.++.. ..++....+++.++++++.. ++++++||+|| +++++|.+.|+++|+++|+++|++||++||+|||++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEP-v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfG 261 (451)
T PRK06062 183 YRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLES-VPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFG 261 (451)
T ss_pred cccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCC
Confidence 5543321 11233344688999999754 46899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+|+++++++.||+++|||+|+||++|+|++++++++++.+.. ..+.+++||++||++|+++.++|+.+++++
T Consensus 262 RtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~ 337 (451)
T PRK06062 262 RTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATFAD----RPYPGGLTYSGHPLACAAAVATINAMEEEG 337 (451)
T ss_pred cCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhcc----CCCCCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999997799999999999988753 235688999999999999999999999889
Q ss_pred HHHHHHHHH-HHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc---------hhHHHHHHHHHHHCCcEEeecC
Q psy14484 330 ILQRISQDM-KKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI---------ETFSKKFFVAALKNELLLRPIG 398 (430)
Q Consensus 330 ~~~~~~~~~-~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~a~~~~~~l~~~Gv~~~~~~ 398 (430)
+.+++++++ ++++++|+++ ..++.+..+++.|+|+++++. .+.... ...+..+++.|+++||++.+.+
T Consensus 338 l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~Gl~~gve~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~~ 416 (451)
T PRK06062 338 IVENAARIGAEVLGPGLRELAERHPSVGEVRGLGVFWALELV-ADRETREPLAPYGASSAAMAAVKAACKERGLLPFVNG 416 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEeEeccccEEEEEEc-ccccccCCCcccchhhHHHHHHHHHHHHCCcEEeecC
Confidence 999999998 6999999998 667888899999999999986 432110 1135688999999999998878
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+||+|++.+|++||++++++|++++.++
T Consensus 417 ~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 417 NRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999865
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-66 Score=502.32 Aligned_cols=408 Identities=29% Similarity=0.515 Sum_probs=355.4
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
|.++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+.....+.++...+++++|.+..|.+
T Consensus 35 ~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~ 111 (460)
T PRK06541 35 VPVIVRGEGC---YIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGD 111 (460)
T ss_pred CceEEeCccc---EEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCC
Confidence 6788998887 8999999999999999999999999999999999999987665445678899999999999998766
Q ss_pred CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCC
Q psy14484 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 94 ~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
.++++|++||+||++.|+|+++.+++.+|.+++.+||.+.++|||.+.+++++++.+.++..+.+...++..++.|+.++
T Consensus 112 ~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 191 (460)
T PRK06541 112 LNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYR 191 (460)
T ss_pred cCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCcccc
Confidence 78999999999999999999999887778778999999999999999999999887777777777777888888887665
Q ss_pred CC-CCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 174 IN-KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 174 ~~-~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
.+ ++.+.+.+...+++.+++.+++. ++++++|++|| +++++|.+.|+++|+++|+++|++||++||+||||+||||+
T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EP-v~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~ 270 (460)
T PRK06541 192 APELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEP-VQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRL 270 (460)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC
Confidence 54 33334445555688899998753 56899999999 99999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|.+|+++++++.||++++||+++||++|+|++++++++++.+.. . .+.+.+++|+++||++++++.++|+.++++++.
T Consensus 271 G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~-~-~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~ 348 (460)
T PRK06541 271 GEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLD-G-PTMFLHGYTFGGHPVSAAVALANLDIFEREGLL 348 (460)
T ss_pred chhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHHhhc-C-CCccccCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999999996699999999999888764 1 145668899999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc--------hh-HHHHHHHHHHHCCcEEeec--C-C
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI--------ET-FSKKFFVAALKNELLLRPI--G-N 399 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~-~a~~~~~~l~~~Gv~~~~~--~-~ 399 (430)
+++++++++|+++|+++..++.+..+++.|+|+++++. .+.... .. ....+++.|+++|+++.+. + +
T Consensus 349 ~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~ 427 (460)
T PRK06541 349 DHVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELV-KDKATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDP 427 (460)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEe-cCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCC
Confidence 99999999999999998557777889999999999996 532111 00 1236788899999999873 3 6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+||+|++.+|++||++++++|++++.++
T Consensus 428 ~lrl~Ppl~~t~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06541 428 VVQLAPPLISGQEEFDEIEQILRSVLTEA 456 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999865
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-67 Score=466.74 Aligned_cols=394 Identities=29% Similarity=0.420 Sum_probs=350.6
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+...|+++.++++. |++|++|++|||+.+|+++..+||+||+|.+++.+|+..+.|.. ..+.+++..++++.|.+.
T Consensus 29 ~~~~Pl~Iv~~~~~---ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~s~ 104 (442)
T KOG1404|consen 29 YYKKPLVIVRGEGQ---YLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALVSK 104 (442)
T ss_pred cccCCceEEecceE---EEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHHHh
Confidence 46689999999887 89999999999999999999999999999999999997766543 367888899999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
+|.++..++|+|||+|||++|+++++.|+ +...+|.+..+|||.+..++++++.+.++.++........+...|
T Consensus 105 ~P~~l~~vfF~nsGsEANelal~mar~Yt------~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~P 178 (442)
T KOG1404|consen 105 LPGDLKVVFFVNSGSEANELALKMARLYT------GNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNP 178 (442)
T ss_pred CCCCceEEEEecCCchHHHHHHHHHHHhc------CCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCC
Confidence 99899999999999999999999999997 888999999999999999999999888888777666677888889
Q ss_pred CCCCCCCCCCh-hHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 170 DSRNINKGNSA-NEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 170 ~~~~~~~~~~~-~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
+.++.+++.+. .+......+++++.+..- ++.++++|+|+ +++-+|++.+++.||+++.++|+++|.++|.||||+|
T Consensus 179 dp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEt-IqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtG 257 (442)
T KOG1404|consen 179 DPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAET-IQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTG 257 (442)
T ss_pred CcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeeh-hccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhc
Confidence 99988875553 333444566777666654 67899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.+|+++..++.|||+|++|++|+| .|+|+++.++++++.+.+. ..+..||++||++++++.++|+++++
T Consensus 258 fGRtG~~wgfe~h~v~PDIvTmAKgiGnG-~Pl~AVvtt~EIa~v~~~~-----~~~fnTyggnP~a~avg~aVL~Vike 331 (442)
T KOG1404|consen 258 FGRTGHMWGFESHGVVPDIVTMAKGIGNG-FPLGAVVTTPEIADVLNQK-----SSHFNTYGGNPVACAVGLAVLKVIKE 331 (442)
T ss_pred cccccccccccccCCCccHHHHHhhccCC-CcceeeecCHHHHHHHHhc-----cccccccCCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7999999999999988861 12789999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccch----hHHHHHHHHHHHCCcEEeec---CC
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIE----TFSKKFFVAALKNELLLRPI---GN 399 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~a~~~~~~l~~~Gv~~~~~---~~ 399 (430)
+++.++..+.+.+|+++|.++ .++|.+.++||+|+|+++++. +++..+. .....+.+.++++|+++..+ |+
T Consensus 332 e~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V-~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~ 410 (442)
T KOG1404|consen 332 ENLQENAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELV-SDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGN 410 (442)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEe-cccCCCCCcchHHHHHHHHHHHHhCeeeecccccce
Confidence 999999999999999999999 789999999999999999999 7662211 12357888999999999765 47
Q ss_pred EEEEeCCCCCCHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+|++|++++|++|++.+++.+
T Consensus 411 vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 411 VFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred EEEecCCeeccHHHHHHHHHHH
Confidence 9999999999999997777655
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-66 Score=499.24 Aligned_cols=398 Identities=33% Similarity=0.611 Sum_probs=348.4
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL 94 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (430)
.++.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+.+|.+.
T Consensus 28 ~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~ 104 (429)
T PRK06173 28 YPVERADGV---MITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSL 104 (429)
T ss_pred ceEEeceee---EEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCc
Confidence 467888776 89999999999999999999999999999999999999876554445678999999999999987678
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCCCC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
++++|++||+||++.|+|+++.++..+|+++|.+||.+.++|||.+.+++++++. +.++..+.+......++++|....
T Consensus 105 ~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 184 (429)
T PRK06173 105 NKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKF 184 (429)
T ss_pred CEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCccc
Confidence 8999999999999999999999987788788999999999999999888888764 446666666655666777664321
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
...+...+++.|++.+.++++++++||+|| + ++++|.++|+++|+++|+++|++||++||+||+|+||||+|
T Consensus 185 ------~~~~~~~~l~~l~~~i~~~~~~iAAvi~EP-i~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG 257 (429)
T PRK06173 185 ------GEEWNDEAIEPLQDLLEQKGDEIAALILEP-VVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG 257 (429)
T ss_pred ------chhHHHHHHHHHHHHHHhCCCcEEEEEEcc-hhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCC
Confidence 123445578999999986667899999999 7 99999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+|+++++++.||+++|||+++||++|++++++++++++.+.. +..+.+.|++||.++|++++++.++|++++++++.+
T Consensus 258 ~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~ 336 (429)
T PRK06173 258 KLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICS-GEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQ 336 (429)
T ss_pred cchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhc-CCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999997899999999999888754 233456789999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHH
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKN 412 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e 412 (430)
++++++++|+++|+++..++.+..+++.|+++.+++. +... +..+.+.|+++|+++.+.++++||.|+++++++
T Consensus 337 ~~~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~-~~~~-----~~~i~~~l~e~Gi~v~~~g~~l~~~Ppl~it~~ 410 (429)
T PRK06173 337 NIQRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMK-EPVN-----MATLQPRFVEHGIWVRPFGKLVYIMPPFIISPD 410 (429)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeC-Cccc-----HHHHHHHHHHCCeEEEecCCEEEEeCCccCCHH
Confidence 9999999999999877556777789999999999997 5311 357889999999999998899999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14484 413 EIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~~~ 429 (430)
|+++++++|++++.++-
T Consensus 411 ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 411 ELSQLTSGLLRVLKQEY 427 (429)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998764
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=501.86 Aligned_cols=382 Identities=30% Similarity=0.540 Sum_probs=338.7
Q ss_pred CCceeEEeecC-CceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 12 SNNLVIRSLKN-SWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
+.+.++.+++| . |+||.||++||||.+|+|+.++||+||+|.+|++++++++.+... .+.++...+++++|.+..
T Consensus 62 ~~~~~~~~~~G~~---~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~lae~L~~~~ 137 (459)
T PRK11522 62 DYGAVEWQAGGLN---TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQ-ELLDPLRAMLAKTLAALT 137 (459)
T ss_pred CCCeeEEeccCeE---EEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccc-ccCCHHHHHHHHHHHHhC
Confidence 45678999988 7 899999999999999999999999999999999999998765432 466888999999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
|.+.++++|++||+||++.|+|+++.++..+ +|.+||.+.++|||++.+++++++.+.++.++.+..+.+.+++++
T Consensus 138 p~~~~~v~f~~SGsEAve~AlklAr~~t~~~---gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~- 213 (459)
T PRK11522 138 PGKLKYSFFCNSGTESVEAALKLAKAYQSPR---GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFG- 213 (459)
T ss_pred CCCCCEEEEeCCchHHHHHHHHHHHHHhccC---CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCC-
Confidence 8667899999999999999999999986333 367899999999999999999988877777777776666666665
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
|++++++.+++ +++++++||+|| +++++|.+.||++|+++++++|++||+++|+||||+|
T Consensus 214 ----------------d~~~l~~~l~~~~~~~~~iAavIvEp-v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG 276 (459)
T PRK11522 214 ----------------NIEAMRTALSECKKTGDDVAAVILEP-IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTG 276 (459)
T ss_pred ----------------CHHHHHHHHHHhhccCCcEEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceec
Confidence 67778877764 246799999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.+|+++++++.||++|+||+|+||++|+|++++++++++.+.. .++.|++||++||++++++.++|+.+++
T Consensus 277 ~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaala~L~~i~~ 352 (459)
T PRK11522 277 MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD----NPFLHTTTFGGNPLACAAALATINVLLE 352 (459)
T ss_pred CCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhcc----CCcccCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999997799999999999887643 2456899999999999999999999988
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVY 402 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR 402 (430)
+++.+++++++++|+++|+++ .+++ .+..+++.|+++.+++. ++ +.+..+++.|+++||++.+. ++.+|
T Consensus 353 ~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~-~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr 426 (459)
T PRK11522 353 QNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFV-DN-----EIGYNFASEMFRQRVLVAGTLNNAKTIR 426 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEec-Cc-----hHHHHHHHHHHHCCeEEEecCCCCCEEE
Confidence 899999999999999999998 5677 57899999999999998 53 22467899999999999875 47999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|+|++.+|++||++++++|++++.++
T Consensus 427 ~~Ppl~~t~~~id~~l~~l~~~l~~~ 452 (459)
T PRK11522 427 IEPPLTLTIEQCEQVLKAARKALAAM 452 (459)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=497.84 Aligned_cols=368 Identities=30% Similarity=0.532 Sum_probs=327.1
Q ss_pred eEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 26 WSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 26 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
+|+||.||++||||.+++|+.++||+||+|.+|++++++++.+... ...++...+++++|++.+|...++++|++||+|
T Consensus 67 ~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~-~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsE 145 (442)
T TIGR03372 67 NTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQ-ELLDPLRALLAKTLAALTPGKLKYSFFCNSGTE 145 (442)
T ss_pred eEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCccc-ccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchH
Confidence 4899999999999999999999999999999999999988764432 456888899999999998866689999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.|+|+++.++..+ ++.+||++.++|||++.+++++++.+.++..+.++..++.++|+|
T Consensus 146 A~e~AlklAr~~t~~~---gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~---------------- 206 (442)
T TIGR03372 146 SVEAALKLAKAYQSPR---GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG---------------- 206 (442)
T ss_pred HHHHHHHHHHHHHhhc---CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC----------------
Confidence 9999999999986433 578899999999999999999988777777788777777788776
Q ss_pred HHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC
Q psy14484 186 CAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 186 ~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
|++++++.+++ +++++++||+|| +++++|.+.|+++|+++++++|++||+++|+||||+||||+|.+|+++++++
T Consensus 207 -d~~~~~~~l~~~~~~~~~vAavIvEp-v~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv 284 (442)
T TIGR03372 207 -DIEAMLKALNECKKTGDDVAAIILEP-IQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGV 284 (442)
T ss_pred -CHHHHHHHHHHHhcCCCcEEEEEEeC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCC
Confidence 56677666653 356899999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 342 (430)
Q Consensus 263 ~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~ 342 (430)
.||++++||+|+||++|+|++++++++++.+.. +++.|++||++||++++++.++|+.++++++.+++++++++++
T Consensus 285 ~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~----~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~ 360 (442)
T TIGR03372 285 QPDILCLAKALGGGVMPIGATIATEAVFSVLFD----NPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLL 360 (442)
T ss_pred CCCeeeehhhhcCCcccceEEEecHHHHHhhhc----cCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999997799999999999887742 2356899999999999999999999998999999999999999
Q ss_pred HHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHH
Q psy14484 343 KALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 343 ~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~ 417 (430)
++|+++ .+++ .+..+++.|+|+++++. ++ ..+..+++.|+++||++.+. ++.+||+|++++|+++++++
T Consensus 361 ~~L~~l~~~~~~~i~~vRG~Gl~~giel~-~~-----~~~~~i~~~l~~~Gvl~~~~~~~~~~lr~~Ppl~~t~~~id~~ 434 (442)
T TIGR03372 361 DGFQQLAAEYPDLIIEARGKGLLMAIEFR-DN-----EIGYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCALV 434 (442)
T ss_pred HHHHHHHHhCCCceEEEecceEEEEEEeC-Ch-----HHHHHHHHHHHHCCcEEeecCCCCCEEEEECCcccCHHHHHHH
Confidence 999998 5677 67899999999999998 53 22467999999999999764 37999999999999999999
Q ss_pred HHHHHHHH
Q psy14484 418 TSAIFQTF 425 (430)
Q Consensus 418 ~~~l~~~l 425 (430)
+++|++++
T Consensus 435 ~~~l~~~~ 442 (442)
T TIGR03372 435 IKAAKDAL 442 (442)
T ss_pred HHHHHHhC
Confidence 99998864
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=496.03 Aligned_cols=397 Identities=36% Similarity=0.655 Sum_probs=344.8
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
+.++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+..|.+
T Consensus 26 ~~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~ 102 (428)
T PRK07986 26 VYPVVSAEGC---ELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQP 102 (428)
T ss_pred CeeEEeeeee---EEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3778888777 8999999999999999999999999999999999999987655443567888999999999999866
Q ss_pred CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCCC
Q psy14484 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 94 ~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
.++++|++||+||++.|+|+++.+++.+| ++|.+||.+.++|||.+.+++++++. ..++..|.+...+..+++.|...
T Consensus 103 ~~~v~f~~SGsEAve~AlklAr~~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 181 (428)
T PRK07986 103 LECVFLADSGSVAVEVAMKMALQYWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSR 181 (428)
T ss_pred cCEEEEeCCcHHHHHHHHHHHHHHHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcc
Confidence 78999999999999999999999866555 36889999999999999999888764 33555666666666667666422
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
. .+++..+|++++++.+++.++++++|++||++++++|.++|+++||++|+++|++||++||+||||+||||+|
T Consensus 182 ~------~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG 255 (428)
T PRK07986 182 F------DGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG 255 (428)
T ss_pred c------chhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCC
Confidence 1 1234567899999999876678999999993399999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+|+++++++.||++++||+++||++|+|++++++++++.+.. .....+.|++||++||++++++.++|+.++++++.+
T Consensus 256 ~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~ 334 (428)
T PRK07986 256 KLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQ 334 (428)
T ss_pred CeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhc-CCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999997899999999999988864 112245689999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHH
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKN 412 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e 412 (430)
++++++++|+++|+++..++.+..+++.|+++.+++. ... . +..+.+.|+++|+++.+.++.+||+|++++|++
T Consensus 335 ~~~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~-~~~---~--~~~~~~~l~~~Gl~~~~~g~~i~~~Ppl~it~~ 408 (428)
T PRK07986 335 QVAAIEAQLREELAPLRDAPMVADVRVLGAIGVVETT-RPV---N--MAALQRFFVEQGVWIRPFGKLIYLMPPYIILPE 408 (428)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeC-Ccc---c--HHHHHHHHHHCCcEEEecCCEEEEeCCCCCCHH
Confidence 9999999999999998557788899999999999987 431 1 467899999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
||++++++|++++.+
T Consensus 409 ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 409 QLQRLTAAVNRAVQD 423 (428)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999864
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-65 Score=496.04 Aligned_cols=399 Identities=28% Similarity=0.402 Sum_probs=337.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|. |+||.||++||||.+++|+.++||+||+|.+|+++++.+........+.++...+++++|.+.+|
T Consensus 39 ~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p 115 (459)
T PRK06931 39 KLPLAIAKAQGV---WVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLP 115 (459)
T ss_pred CCCceEEecccc---EEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCC
Confidence 458899999888 79999999999999999999999999999999999998643222224677888999999999987
Q ss_pred CCC---CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 92 YKL---GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 92 ~~~---~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
... ..+++++||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++.+.++..+.+...++.++++
T Consensus 116 ~~~~~~~~~f~~~SGsEAve~AlklAr~~t------gr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~ 189 (459)
T PRK06931 116 GQGKEYCLQFTGPSGADAVEAAIKLAKTYT------GRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPY 189 (459)
T ss_pred CccccceEEEeCCCcHHHHHHHHHHHHHhc------CCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCC
Confidence 332 245666999999999999999986 88999999999999999999888877777777777777888888
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
|+.++.+++...++......+.+++.+.+ .++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EP-iqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~ 268 (459)
T PRK06931 190 PHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEA-IQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ 268 (459)
T ss_pred CccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch
Confidence 88777665433222111122223444432 245799999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 246 ~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
+||||+|.+|+++++++.||++++||+++|| +|+|++++++++ +.+.. ..|++||++||++|+++.++|+++
T Consensus 269 tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG-~Pi~av~~~~~~-~~~~~------~~~~~T~~gnpla~aaala~L~~l 340 (459)
T PRK06931 269 AGFARTGKMFAFEHAGIEPDIIVMSKAVGGG-LPLAVLGIKKEF-DAWQP------GGHTGTFRGNQLAMATGLTTLKIL 340 (459)
T ss_pred hcCCcCchHHHhhhcCCCCCEEEecccccCC-cceeeeeeHHHH-hhccC------CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 799999988774 55532 358999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---------chhHHHHHHHHHHHCCcEEe
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~a~~~~~~l~~~Gv~~~ 395 (430)
+++++.+++++++++|+++|+++ .++|.+..+++.|+|+++++. ++... ..+.+..+.+.|+++|+++.
T Consensus 341 ~~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Glm~giel~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~ 419 (459)
T PRK06931 341 KEENLAQNAAERGEWLKAQLAELQKRYPCIGNVRGRGLMIGIEIV-DERQPADAMGSYPADGELAAAIQKACFENGLLLE 419 (459)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEecCceEEEEEEc-cCcccccccccCCccHHHHHHHHHHHHHCCcEEe
Confidence 99999999999999999999999 678888999999999999996 53211 12345678889999999997
Q ss_pred ec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 396 PI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 396 ~~---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+. ++++||.|++++|++||++++++|++++.+++
T Consensus 420 ~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 420 RGGRNGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred ecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 65 47899999999999999999999999998764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=489.78 Aligned_cols=398 Identities=33% Similarity=0.584 Sum_probs=341.8
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|++++++++.+.......++...+++++|++..|
T Consensus 21 ~~p~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p 97 (422)
T PRK05630 21 VRNRLVTSTDGV---FLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTD 97 (422)
T ss_pred CCCeeEEeceee---EEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCC
Confidence 457899999887 79999999999999999999999999999999999999876554444678889999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (430)
.+.++++|++||+||++.|+|+++.++..+|.++|.+||++.++|||.+.+++++++. +.++..|.+......+++.|.
T Consensus 98 ~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~ 177 (422)
T PRK05630 98 NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPP 177 (422)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCc
Confidence 5678999999999999999999999987778778899999999999999999988764 345556666555666676663
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
... .+.++ ....++.+++.+. +++++||+|| + ++++|.+.|+++|+++|+++|++||++||+|||++|||
T Consensus 178 ~~~----~~~~~-~~~~~~~~~~~~~---~~iAAvi~EP-i~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~G 248 (422)
T PRK05630 178 VRG----SSPQE-ISEYLRSLELLID---ETVAAIIIEP-IVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFG 248 (422)
T ss_pred ccC----CChHH-HHHHHHHHHHHHh---hceEEEEEec-hhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCC
Confidence 211 11111 1123566777664 5899999999 7 99999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+|+++.+++.||++|+||+++||+.|+|++++++++++.+........+.|++||++||++++++.++|+++++++
T Consensus 249 rtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~ 328 (422)
T PRK05630 249 RTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGM 328 (422)
T ss_pred cCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999977999999999999887541112345689999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCC
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYIL 409 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~ 409 (430)
+.+++++++++|++.|+.+..++.+.++++.|+++.+++. +... +..+.+.++++|+++.+.++++||.|++++
T Consensus 329 ~~~~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~-~~~~-----~~~~~~~~~~~Gl~~~~~g~~l~~~PpL~i 402 (422)
T PRK05630 329 WRKQVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEME-QPVD-----MEEATQAAVDHGVWLRPFGRLVYVMPPYIT 402 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEEC-Cccc-----HHHHHHHHHHCCeEEEecCCEEEEECCccC
Confidence 9999999999999999888557788899999999999997 4311 357888999999999988899999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
|++||++++++|++++..
T Consensus 403 t~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 403 TSEQIAQICAALAAAVKA 420 (422)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=490.98 Aligned_cols=400 Identities=40% Similarity=0.740 Sum_probs=347.7
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+.+|.
T Consensus 24 ~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~ 100 (423)
T PRK05964 24 PPIPIVRAEGA---YLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPG 100 (423)
T ss_pred CCeeEEecccc---EEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCC
Confidence 57899999887 899999999999999999999999999999999999998765443356788889999999999875
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
+.++++|++||+||++.|+|+++.++..+|.++|.+||.+.++|||.+.+++++++.+.++..+.+...+..++++|+..
T Consensus 101 ~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d 180 (423)
T PRK05964 101 GLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDG 180 (423)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcch
Confidence 67899999999999999999999997777777899999999999999999999888766666666655556677776421
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
....+++++++.+.++++++++|++||++++++|+++|+++|+++|+++|++||++||+||+|+|+||+|
T Consensus 181 ----------~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G 250 (423)
T PRK05964 181 ----------YEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTG 250 (423)
T ss_pred ----------hHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc
Confidence 1123589999999876778999999994499999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+++++.+++.||++++||+++||++|+|++++++++++.+........+.+++||++||++++++.++|+.++++++.+
T Consensus 251 ~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~ 330 (423)
T PRK05964 251 TLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLE 330 (423)
T ss_pred chhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence 88888889999999999999999878999999999999887531112345688999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHH
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKN 412 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e 412 (430)
+++++++++++.|+++..++.+..+++.|+++.+++. ++.. ...+..+.+.|.++||++.+.++.+||+|++++|++
T Consensus 331 ~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~-~~~~--~~~~~~l~~~l~~~Gv~v~~~~~~lR~~p~l~~t~e 407 (423)
T PRK05964 331 RVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELD-RPVL--ERDGPALRAFALERGVLLRPLGNTIYLMPPYIITAE 407 (423)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEec-cCcc--hhHHHHHHHHHHHCCeEEEecCCEEEEeCCcccCHH
Confidence 9999999999999988557777788999999999997 5321 112467899999999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14484 413 EIQHMTSAIFQTFNEV 428 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~~ 428 (430)
|||+++++|+++++++
T Consensus 408 dId~~v~~l~~al~~~ 423 (423)
T PRK05964 408 ELDRITDAIVEVADEL 423 (423)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999874
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-64 Score=489.84 Aligned_cols=398 Identities=24% Similarity=0.385 Sum_probs=340.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|+++.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+..|.
T Consensus 35 ~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~ 111 (457)
T PRK05639 35 FPLVPKRGFGA---LIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPI 111 (457)
T ss_pred CCceEEeeecC---EEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCC
Confidence 58899999888 899999999999999999999999999999999999998755433344568888999999999875
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
..++++|++||+||++.|+|+++.++ ++.+||.+.++|||++.+++++++. ..++..+.+...++.++++|+.
T Consensus 112 ~~~~v~f~~SGsEA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (457)
T PRK05639 112 ENPKVLFGLSGSDAVDMAIKVSKFST------RRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNP 185 (457)
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHhc------CCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCcc
Confidence 56899999999999999999999885 8889999999999999988887764 3355666666667778888866
Q ss_pred CCCCCC----CChhHHHHHHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 172 RNINKG----NSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 172 ~~~~~~----~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
++.+.. .+.+......++.+++.+.. .++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EP-iqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv 264 (457)
T PRK05639 186 YRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEP-IQGDAGIVVPPENFFKELKKLLDEHGILLVMDEV 264 (457)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 554322 12334444456778877643 257899999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
++||||+|.+|+++++++.||++++||+++|| +|+|++++++++++. .. + .+.+|++++|++++++.++|+.
T Consensus 265 ~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG-~pi~av~~~~~i~~~-~~----~--~~~~T~~g~p~~~aaa~a~l~~ 336 (457)
T PRK05639 265 QTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGRKELMDL-TS----G--SALLTPAANPVISAAAEATLEI 336 (457)
T ss_pred hhccCcCchHHHHHhcCCCCCEEEechhhcCC-CcceeEEehHHHHhh-cC----C--CcccCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 699999999999883 22 1 2568999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc-cchhHHHHHHHHHHHCCcEEeec---CC
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPI---GN 399 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~a~~~~~~l~~~Gv~~~~~---~~ 399 (430)
++++++.+++++++++|+++|+++ .+++.+.+++|.|+|+++++. .+.. .....+..+.+.|+++|+++.+. ++
T Consensus 337 l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~-~~~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~ 415 (457)
T PRK05639 337 IEEENLLKNALKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIV-KENGKPDPELTGKICWRAFELGLILPSYGMFGN 415 (457)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEe-cCCCCCCHHHHHHHHHHHHhCCeEEeecCCCCC
Confidence 999999999999999999999998 678888899999999999996 4321 12234578899999999999875 37
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+||.|++++|++|+++++++|++++.++.
T Consensus 416 ~lr~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 416 VIRITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred EEEEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998653
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=487.49 Aligned_cols=399 Identities=27% Similarity=0.401 Sum_probs=336.3
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|+++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|+++++++..+.....+.++...+++++|.+.+|
T Consensus 20 ~~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p 96 (442)
T TIGR00709 20 KLPTAFAKAQGC---WVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIP 96 (442)
T ss_pred CCCceEEecccc---EEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCC
Confidence 357899999888 79999999999999999999999999999999999998765443334678889999999999987
Q ss_pred CC---CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 92 YK---LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 92 ~~---~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
.. ...+++++||+||++.|+|+++.++ +|.+||++.++|||.+.+++++++.+.++..+.+...+..++++
T Consensus 97 ~~~~~~~~~f~~~sGsEA~e~AlklAr~~t------gr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~ 170 (442)
T TIGR00709 97 KRKMDYKLQFPGPSGADAVEAAIKLAKTYT------GRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPY 170 (442)
T ss_pred CcCCCccEEEeCCCHHHHHHHHHHHHHHhc------CCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCC
Confidence 32 2335667999999999999999986 78899999999999999999998866666666666666777788
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
|+.++.+++.+.+.......+.+++.++. .++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||||
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Ep-i~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~ 249 (442)
T TIGR00709 171 PHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEA-IQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ 249 (442)
T ss_pred CccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 87666554333222212223334555532 236799999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 246 ~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
+||||+|.+|+++++++.||++++||++++| +|+|+++++++ ++.+.. ..|++||++||++++++.++|+.+
T Consensus 250 tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G-~Pigav~~~~~-~~~~~~------~~~~~T~~gnpla~aaa~a~L~~i 321 (442)
T TIGR00709 250 AGFGRSGTMFAFEHAGIEPDFVVMSKAVGGG-LPLAVLLIAPE-FDAWQP------AGHTGTFRGNQLAMVTGTEALNYW 321 (442)
T ss_pred cCCCCCCchhHHHHcCCCCcEEEEcccccCC-cccEEEEEchH-HhccCC------CcCCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 79999999988 454432 347899999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---------chhHHHHHHHHHHHCCcEEe
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~a~~~~~~l~~~Gv~~~ 395 (430)
+++++.+++++++++|+++|+++ .+++.+..+++.|+|+++++. ++..+ ....+..+...|+++|+++.
T Consensus 322 ~~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~ 400 (442)
T TIGR00709 322 KDDNLAQNAQERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIV-DERQSKDATGAYPRDCELAAAIQGACFENGLLLE 400 (442)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEc-cCcccccccccCCcchHHHHHHHHHHHHCCeEEe
Confidence 88999999999999999999998 678888999999999999997 53211 11245678889999999997
Q ss_pred ec---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 396 PI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 396 ~~---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+. ++++||.|++++|++|+++++++|++++.+++
T Consensus 401 ~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 437 (442)
T TIGR00709 401 TGGREGEVFRLLCPITIDQEECEEGISRFKQAVEEAL 437 (442)
T ss_pred ecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 65 58999999999999999999999999998763
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-64 Score=488.54 Aligned_cols=397 Identities=27% Similarity=0.424 Sum_probs=333.9
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+.+|
T Consensus 37 ~~p~~i~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p 113 (443)
T PRK06058 37 TLPVYVARAGGG---IVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTP 113 (443)
T ss_pred CCCceEEeeeee---EEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 357899999887 89999999999999999999999999999999999998865443334567888999999999987
Q ss_pred CC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCC
Q psy14484 92 YK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (430)
.. .++++|++||+||++.|+|+++.++ ++++||++.++|||++.+++++++. ..++..+.++......+++|
T Consensus 114 ~~~~~~v~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK06058 114 GDHEKRSALFNSGAEAVENAVKIARSYT------GRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMS 187 (443)
T ss_pred CCCCCEEEEeCCcHHHHHHHHHHHHHhh------CCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCC
Confidence 33 3699999999999999999999986 7889999999999999999988764 23555565555566666655
Q ss_pred CCCCCCCC--CChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 170 DSRNINKG--NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 170 ~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
..++.... ...++.....++.+++.+. ++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||||+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~iAavi~EP-i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tG 264 (443)
T PRK06058 188 YPYRDPKGLATDGEEAAARAITVIEKQVG--ADNLAAVIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTG 264 (443)
T ss_pred cccccccccccchHHHHHHHHHHHHHhhC--CCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 44332110 1111222224455555553 46899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.+|+++++++.||++++||+++|| +|+|++++++++++.+.. ..+++||++||++++++.++|+.+++
T Consensus 265 fgRtG~~fa~~~~gv~PDiv~~gK~l~~G-~Pi~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~~ 337 (443)
T PRK06058 265 FARTGAWFACEHEGIVPDLITTAKGIAGG-LPLSAVTGRAEIMDAPHP------GGLGGTYGGNPVACAAALAAIETIEE 337 (443)
T ss_pred CCcChhhhHHHhcCCCCCEEEEcccccCC-CccEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 799999999999888764 34789999999999999999999988
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC--ccchhHHHHHHHHHHHCCcEEeec---CCEE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPI---GNTV 401 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~Gv~~~~~---~~~l 401 (430)
+++.+++++++++++++|+++ ..++.+..+++.|+|+++++. ++. .....++..+.+.|+++||++.+. ++++
T Consensus 338 ~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~~~~l 416 (443)
T PRK06058 338 DDLVARARQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELV-KPGTTEPDAELTKALAAAAHAAGVIVLTCGTYGNVI 416 (443)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEe-cCCCCCCcHHHHHHHHHHHHHCCeEEeccCCCCCEE
Confidence 999999999999999999998 567888899999999999997 532 112234678889999999999875 4799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||.|++++|+++|++++++|++++.++
T Consensus 417 r~~Ppl~~t~~~i~~~~~~l~~~l~~~ 443 (443)
T PRK06058 417 RLLPPLVIGDELLREGLDVLEAALADL 443 (443)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998763
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=484.54 Aligned_cols=399 Identities=25% Similarity=0.431 Sum_probs=343.9
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|+++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|++.+|.
T Consensus 24 ~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~ 100 (445)
T PRK08593 24 YPLVIDHGYGA---TLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPG 100 (445)
T ss_pred CCceEEeeeeC---EEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCC
Confidence 58899999887 799999999999999999999999999999999999998766544456789999999999999874
Q ss_pred CC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCCC
Q psy14484 93 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 93 ~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (430)
.. ++|+|++||+||++.|+|+++.++ +|.+||.++++|||++.+++++++.. .++..+.+...++.++++|+
T Consensus 101 ~~~~~v~f~~SGseA~e~AiklAr~~t------gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~ 174 (445)
T PRK08593 101 DFEKRVTFGLSGSDANDGIIKFARAYT------GRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPD 174 (445)
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCc
Confidence 43 699999999999999999999986 88899999999999999999888743 34556667677777888887
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++.+.....++.....++++++.+.++ ++++++||+|| +++++|.++|+++|+++|+++|++||++||+||||+||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EP-v~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~ 253 (445)
T PRK08593 175 KYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIET-IQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGL 253 (445)
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 7665433222233333467777777643 46899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
||+|.+++++.+++.||++++||+++|| +|+|++++++++++.+.. ..+..|++++|++++++.++|+.++++
T Consensus 254 GrtG~~~a~~~~gv~pDi~t~gK~l~~G-~p~gav~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~ 326 (445)
T PRK08593 254 GRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVGRKEIMESLEA------PAHLFTTGANPVSCAAALATIDMIEDE 326 (445)
T ss_pred CcCchHHHHHhcCCCCCEeeecccccCC-cccEEEEEcHHHHhhhcc------CCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 9999988889999999999999999999 799999999999888753 136779999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeec-CCEEEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPI-GNTVYL 403 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~ 403 (430)
++.+++++++++|+++|+++ .+++.+..+++.|+++++++. .+.. .....+..+++.|+++||++.+. ++.+||
T Consensus 327 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~gi~l~-~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~ 405 (445)
T PRK08593 327 SLLQRSAEKGEYARKRFDQWVSKYNFVGDVRGYGLSIGIDIV-SDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRF 405 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccceEEEEEEe-cCCCcCCCcHHHHHHHHHHHHHCCeEEeccCCCEEEE
Confidence 99999999999999999998 678888999999999999987 4321 12233578999999999999774 589999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+|++.+|++||++++++|++++.++.
T Consensus 406 ~p~l~~t~~~id~~~~~l~~~l~~~~ 431 (445)
T PRK08593 406 QPPLVITYEQLDTALNTIEQAFTALE 431 (445)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=438.31 Aligned_cols=386 Identities=29% Similarity=0.453 Sum_probs=341.9
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
.+.+++-|.++.+++|+ ++||.+|++|+||.+++++.+.||+||.|.++++++.+++...++ .+..+..-++++.+
T Consensus 35 ahnyhpLpvvf~ka~g~---~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssr-afYnd~~~~f~~~v 110 (427)
T KOG1402|consen 35 AHNYHPLPVVFSKAKGS---RVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSR-AFYNDVLGEFAEYV 110 (427)
T ss_pred cccCCcCceEEEecCCc---EEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhH-HHhhhhHHHHHHHH
Confidence 45677888999999998 799999999999999999999999999999999999998654432 34456778899999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhh-hhcCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC-e
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-YNKGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-T 163 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~-~~~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (430)
.+++ +.+.++.+++|.||++.|+|++|.|. +.++.| .+.+|+.-.++|||.+.++.+++..+.-...|.|+.+. +
T Consensus 111 t~lf--~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~ 188 (427)
T KOG1402|consen 111 TKLF--GYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVV 188 (427)
T ss_pred HHhc--CcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcc
Confidence 9999 78899999999999999999999664 455555 55678888999999999999999887666678877666 4
Q ss_pred eEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy14484 164 YIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DE 243 (430)
..+++. |+++|+.+++ .++++++++|| +|++.|.++||+.||++++++|++|++++|.||
T Consensus 189 ~~v~Y~-----------------d~eale~~l~--~~~vaaFivEP-IQGEaGVvvP~~GYL~~vreLCtkynvl~I~DE 248 (427)
T KOG1402|consen 189 DKVPYG-----------------DAEALEVALK--SPNVAAFIVEP-IQGEAGVVVPPPGYLKKVRELCTKYNVLLIADE 248 (427)
T ss_pred eeeccC-----------------CHHHHHHHhc--CCCeeEEEeec-cccccceEeCCchhHHHHHHHHHhhcEEEEehh
Confidence 556554 8999999998 47999999999 999999999999999999999999999999999
Q ss_pred cccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 244 IAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 244 v~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
+|+|++|+|++++.++..+.||++.|+|+++||.+|+++++++++++-.+.+ ..|++||++||++++++.++|+
T Consensus 249 vQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~p------geHgsTyggNpLg~~vaiAale 322 (427)
T KOG1402|consen 249 VQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKP------GEHGSTYGGNPLGCAVAIAALE 322 (427)
T ss_pred hhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCC------CccccccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988766 4599999999999999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CE
Q psy14484 324 IFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NT 400 (430)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~ 400 (430)
.+.++++.++.+.++..|+.+|..+ ...|+ +..++|+|++.++++. ..+. +...+-.+|-.|.++|++..|.+ +.
T Consensus 323 vi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~-~~~~-~~~~aw~~cl~lk~~g~LAkptH~~I 400 (427)
T KOG1402|consen 323 VIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVIN-PSKT-SGQDAWDVCLALKENGLLAKPTHGNI 400 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEec-cccc-cchhHHHHHHcccccccccCCCCCCe
Confidence 9999999999999999999999999 56665 6789999999999997 5332 22225678889999999998875 78
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+||.|++.++++|+++.++++++++.
T Consensus 401 iRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 401 IRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred EEecCCcccCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-63 Score=482.71 Aligned_cols=395 Identities=28% Similarity=0.446 Sum_probs=340.5
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.+.++.+++|. |+||.||++||||+++ ++.+|||+||+|.+|++++++++.+.. ..+.++...+++++|++.+|.
T Consensus 54 ~~~~i~~a~G~---~l~D~dG~~ylD~~g~-~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~lae~L~~~~p~ 128 (459)
T PRK06082 54 CLDVLASAEGI---YIEDVDGKKYMDFHGN-NVHQLGYGHPHVIEKVKEQMAKLPFSP-RRFTNETAIECAEKLTEIAGG 128 (459)
T ss_pred CCceEEeeeee---EEEECCCCEEEEcccH-hhcccCCCCHHHHHHHHHHHHhCCCcc-CccCCHHHHHHHHHHHHhCCC
Confidence 36888889887 7999999999999854 899999999999999999999876533 356789999999999999975
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
..++++|++||+||+++|+|+++.++ ++.+||++.++|||++.+++++++.+.++..+.+...++..++.|..+
T Consensus 129 ~~~~v~f~~sGseAve~AlklAr~~t------gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (459)
T PRK06082 129 ELNRVLFAPGGTSAIGMALKLARHIT------GNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSY 202 (459)
T ss_pred CCCEEEECCCcHHHHHHHHHHHHHhc------CCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCccc
Confidence 56899999999999999999999985 789999999999999999998888777777777777777888877666
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
+.++. +.+.....+++.+++.+++. +++++||+|| +++++ .+.|+++|+++|+++|++||++||+|||++||||+|
T Consensus 203 ~~~~~-~~~~~~~~~~~~l~~~i~~~-~~vAavIvEP-v~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG 278 (459)
T PRK06082 203 RGAFP-DADGSDVHYADYLEYVIEKE-GGIGAFIAEA-VRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG 278 (459)
T ss_pred ccccC-ChhHHHHHHHHHHHHHHhcC-CCEEEEEECC-ccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc
Confidence 55432 22334445678899988753 5799999999 99885 688999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+|+++++++.||++++||+++||++|+|++++++++++.+.. .+.+ +||++||++++++.++|+.++++++.+
T Consensus 279 ~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~-----~~~~-~T~~gnpl~~aaa~a~L~~l~~~~l~~ 352 (459)
T PRK06082 279 EWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQI-----SLGH-YTHEKSPLGCAAALATIEVIEQEGLLE 352 (459)
T ss_pred hhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccC-----CCCC-CCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999997799999999998754421 2335 799999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeec-CCEEEEeCCC
Q psy14484 333 RISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-GNTVYLMPPY 407 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~ 407 (430)
++++++++|+++|+++ .+++.+..+++.|+|+++++. .+... ....+..+.+.++++|+++.+. ++.+||+|++
T Consensus 353 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~-~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl 431 (459)
T PRK06082 353 KVKADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELV-TDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPL 431 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEc-cCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCC
Confidence 9999999999999998 678888899999999999997 53221 1123567888999999999886 6899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++|++||++++++|++++.++.
T Consensus 432 ~it~~eid~~~~~l~~~l~~~~ 453 (459)
T PRK06082 432 IITREELTQALAILEEAIAKIC 453 (459)
T ss_pred ccCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=477.95 Aligned_cols=398 Identities=29% Similarity=0.443 Sum_probs=341.2
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+..|
T Consensus 35 ~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p 111 (441)
T PRK05769 35 WYPLVIERGEGV---WVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAP 111 (441)
T ss_pred CCCeeEEecceE---EEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCC
Confidence 357888888776 89999999999999999999999999999999999999876654445678889999999999986
Q ss_pred CC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCC
Q psy14484 92 YK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (430)
.+ .++++|++||+||++.|+|+++.++ +|.+|+.+.++|||++.+++++++. +.++..|.+...++..+++|
T Consensus 112 ~~~~~~v~f~~SGsEA~e~AlklAr~~t------gr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~ 185 (441)
T PRK05769 112 GGFEKKVFFTNSGTESNEAAIKIARYHT------GRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYP 185 (441)
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHHh------CCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCC
Confidence 32 5799999999999999999999986 8899999999999999998888654 34566677777777888888
Q ss_pred CCCCCCCC-CChhHHHHHHHHHHHH-HHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 170 DSRNINKG-NSANEIARCAIFDLEI-LLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 170 ~~~~~~~~-~~~~~~~~~d~~~le~-~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
+.++.+++ .+.++....+++.+++ ++++ .++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Ep-v~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~ 264 (441)
T PRK05769 186 NPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEP-IQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQ 264 (441)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 76665543 3333333446777887 4443 256899999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 246 ~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
+||||+|.+++++.+++.||+++|||++++| +|+|++++++++++.+. ..+++||+++|++++++.++|+++
T Consensus 265 tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G-~p~gav~~~~~i~~~~~-------~~~~~T~~g~p~~~aaa~a~L~~l 336 (441)
T PRK05769 265 TGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAELMFLPP-------GSHANTFGGNPVAAAAALATLEEL 336 (441)
T ss_pred hCCCcccceehhhccCCCCCEEEEcccccCC-cccEEEEEehhhhhcCC-------CCCCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999 79999999999875332 247899999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC-ccchhHHHHHHHHHHHCCcEEeecC-CEEE
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP-EQIETFSKKFFVAALKNELLLRPIG-NTVY 402 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR 402 (430)
++ ++.+++++++++|++.|+++ .+++.+..+++.|+++.+++. ++. ......+..+.+.|+++|+++.+.+ +.+|
T Consensus 337 ~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr 414 (441)
T PRK05769 337 EE-GLLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELV-KDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIR 414 (441)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEec-cCCccccHHHHHHHHHHHHhCCcEEecCCCCEEE
Confidence 88 99999999999999999998 567888899999999999997 532 1122345678889999999998765 7899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++++|++||++++++|++++.+++
T Consensus 415 ~~p~l~~t~~~id~~~~~l~~~l~~~~ 441 (441)
T PRK05769 415 IIPPLIITEEEADIGLEILEEAIKELL 441 (441)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998764
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-62 Score=475.35 Aligned_cols=390 Identities=27% Similarity=0.441 Sum_probs=337.6
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
|.++.+++|. |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+.+|.+
T Consensus 23 p~~i~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~ 99 (425)
T PRK07495 23 QIYADRAENA---EIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGD 99 (425)
T ss_pred CeeEEeeeec---EEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCC
Confidence 7889999887 7999999999999999999999999999999999999987654434567888899999999998744
Q ss_pred -CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCC
Q psy14484 94 -LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 94 -~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.++++|++||+||++.|+|+++.++ ++.+|+.+.++|||++.+++++++. ..++..+.+...++.++++|..
T Consensus 100 ~~~~v~f~~SGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (425)
T PRK07495 100 FAKKTIFVTTGAEAVENAVKIARAAT------GRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE 173 (425)
T ss_pred CCCEEEECCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcc
Confidence 3699999999999999999999985 7889999999999999988887765 3466667766667778888865
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
+++. + ...+++++++.+.+ .++++++|++|| +++++|.++++++|+++|+++|++||+++|+||+|+|||
T Consensus 174 ~~g~---~----~~~~~~~l~~~~~~~~~~~~iaavi~EP-v~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~g 245 (425)
T PRK07495 174 LHGV---S----VEQSLAALDKLFKADVDPQRVAAIIIEP-VQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFA 245 (425)
T ss_pred cccc---c----HHHHHHHHHHHHHhccCCCceEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 4421 1 11356778888864 246799999999 999999899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+||+++|++++++.++|+++++++
T Consensus 246 r~G~~~a~~~~gv~pDi~tlsK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~~~~ 318 (425)
T PRK07495 246 RTGKLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGP------GGLGGTYGGNPLGIAAAHAVLDVIEEED 318 (425)
T ss_pred cCCCceeecccCCCCCEEeehhhhcCC-ccceEEEEcHHHHhccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhch
Confidence 999988888899999999999999999 799999999999887754 2478999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--cchhHHHHHHHHHHHCCcEEeec---CCEEEE
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--QIETFSKKFFVAALKNELLLRPI---GNTVYL 403 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~ 403 (430)
+.+++++++++++++|+++ ..+|.+..+++.|+|+++++. +... .....+..+.+.++++|+++.+. ++.+||
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~iel~-~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g~~~~~~r~ 397 (425)
T PRK07495 319 LCERANQLGNRLKQRLASLRETVPEIADIRGPGFMNAVEFN-DADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRF 397 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeecCceEEEEEEe-cCCCCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEE
Confidence 9999999999999999998 667888899999999999997 5321 12234567899999999999764 479999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.|++++|++++++++++|++++.++
T Consensus 398 ~Ppl~it~~~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 398 LAPITIQDDVFAEALDILEASILEA 422 (425)
T ss_pred eCCCccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999764
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=477.36 Aligned_cols=398 Identities=32% Similarity=0.498 Sum_probs=343.6
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK 93 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 93 (430)
+.++.+++|. |+||.||++||||.+|+|+.+|||+||+|.+|++++++++.+.....+.++...+++++|++.+|..
T Consensus 26 ~~~~~~~~G~---~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~ 102 (433)
T PRK08117 26 NLPVVKGEGC---YYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGG 102 (433)
T ss_pred CceEEeeeee---EEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC
Confidence 3788888777 7999999999999999999999999999999999999987654433467788999999999999656
Q ss_pred CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCCC
Q psy14484 94 LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 94 ~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
.+.++|++||+|||+.|+|+++.++ ++.+||.++++|||++.++++++.. +.++..+.+...++.++|+|+.+
T Consensus 103 ~~~v~f~~SGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (433)
T PRK08117 103 LDCFFFSNSGAEAIEGALKLAKHVT------KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCD 176 (433)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHHhc------CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccc
Confidence 7899999999999999999999885 7889999999999999998877653 44555566666677788888766
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
+.+.....++...++++++++.+++ .++++++||+|| +++++|.+.|+++|+++|+++|++||++||+||||+||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr 255 (433)
T PRK08117 177 RCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEP-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGR 255 (433)
T ss_pred cccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECC-eeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCc
Confidence 5544333445567789999998875 246899999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++++.+++.||++++||++++| +|+|++++++++++.+.. ..+++|++++|++++++.++|+.++++++
T Consensus 256 ~G~~~~~~~~gv~pDi~t~sK~lg~G-~pigav~~~~~i~~~~~~------~~~~~T~~~np~~~aaa~a~L~~l~~~~l 328 (433)
T PRK08117 256 TGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQWPL------GSHGTTFGGNPVACAAALATLEVIKEEKL 328 (433)
T ss_pred cccchhHhhcCCCCCEeehhhhccCC-CcceeEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHhccH
Confidence 99988888889999999999999999 799999999999887754 34788999999999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc-cchhHHHHHHHHHHHCCcEEeec---CCEEEEeC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPI---GNTVYLMP 405 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~ 405 (430)
.+++++++++++++|+++ ..++.+..+++.|+++++++. ++.. .....+..+.+.|+++||++.+. ++.+||+|
T Consensus 329 ~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~~gi~~~-~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p 407 (433)
T PRK08117 329 LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLMIGIEIV-DPDGEPDGDAVEKILDKCLEKGLLFYLCGNAGNVLRMIP 407 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcEEEEEEe-cCCCCcchHHHHHHHHHHHHCCCEEeecCCCCCEEEEeC
Confidence 999999999999999988 567777789999999999997 5321 11223567889999999998764 37999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++.+|+++|++++++|.+++.++.
T Consensus 408 ~~~~t~~~i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 408 PLTVTKEEIDEGLDILDEALTEYE 431 (433)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=470.28 Aligned_cols=383 Identities=24% Similarity=0.399 Sum_probs=336.8
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|+++.+++|. |+||.||++||||.+++|+.++||+||+|.+|+.++++++.+... .+.++...+++++|.+..
T Consensus 20 ~~~~~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~~~ 95 (408)
T PRK04612 20 RPRQVVLERGQGS---RVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVTAS 95 (408)
T ss_pred CCCCceEEEeeeC---EEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhC
Confidence 4667899999888 799999999999999999999999999999999999988655433 356788889999999987
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC-CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~-~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
| ..++++|++||+||++.|+|+++.++..+|. +++.+||.+.++|||++.+++++++.+.++..+.+...++..+++|
T Consensus 96 ~-~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 174 (408)
T PRK04612 96 R-FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFN 174 (408)
T ss_pred C-CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCC
Confidence 6 3479999999999999999999998776775 3577899999999999999999888777777676655555556555
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
|++.+++++. ++++++|++|| +++++|++.++++|+++|+++|++||+++|+||+|+|+|
T Consensus 175 -----------------d~~~l~~~~~--~~~~aavi~eP-~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~g 234 (408)
T PRK04612 175 -----------------DVEALEAAMA--GGDVAAVMLEP-IQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMG 234 (408)
T ss_pred -----------------CHHHHHHhhC--CCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 7888998885 46899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
++|.+++....++.||+++|||++++| +|+|++++++++++.+.. ..+++||+++|++++++.++|+.+++++
T Consensus 235 r~G~~~a~~~~~~~pdi~t~~K~l~~G-~piga~~~~~~~~~~~~~------~~~~~t~~~~p~~~aaa~a~L~~~~~~~ 307 (408)
T PRK04612 235 RTGTLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQF------GAHGTTFGGNPLAAAVARVALRKLASPQ 307 (408)
T ss_pred cCCchhhhhhcCCCCCEEEEcchhcCC-CceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999877777778999999999999999 799999999998877654 3478899999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCC
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 407 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~ 407 (430)
+.+++++++++++++|+++ ..++.+..+++.|+|+++++. .+.. ..+..+++.|+++|+++.+.+ +.+||.|++
T Consensus 308 l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~-~~~~---~~a~~i~~~l~~~Gvlv~~~g~~~lRl~Ppl 383 (408)
T PRK04612 308 IAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLA-PAHA---GQAGAILDLAAEHGLLLLQAGPDVLRFVPAL 383 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEec-Cchh---hHHHHHHHHHHHCCeEEeeCCCCEEEEcCCc
Confidence 9999999999999999998 567888899999999999987 4211 224678999999999998876 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.++++||++++++|++++.++.
T Consensus 384 ~it~eeid~~l~~l~~~l~~~~ 405 (408)
T PRK04612 384 NLTDAELADGLARLRLALADYV 405 (408)
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=470.63 Aligned_cols=398 Identities=28% Similarity=0.405 Sum_probs=341.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|. |+||.||++||||.+|+|+.+|||+||+|.+|+++++.++.+.......++...++++.|.+..|
T Consensus 22 ~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p 98 (443)
T PRK08360 22 YYPLVPVKAENA---KVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAP 98 (443)
T ss_pred cCCceEEeccee---EEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCC
Confidence 458889998877 89999999999999999999999999999999999999876655445567888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (430)
...++++|++||+||++.|+|+++.++ +|.+|+.+.++|||++.++.++++.. .++..+.+ ..+..++++|+
T Consensus 99 ~~~~~v~f~~sGsEAve~AlklAr~~t------gr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~-~~~~~~~~~~~ 171 (443)
T PRK08360 99 GDNPKVSFGLSGSDANDGAIKFARAYT------KRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGE-LSDVHYIPYPD 171 (443)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhc------CCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCC-CCCcEEEeCCc
Confidence 666899999999999999999999986 88999999999999998888877632 34444555 45567778887
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
..+.++.....+...++++.+++.+.+. ++++++|++|| +++++|.+.|+++|+++|.++|++||+++|+||+|+||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 250 (443)
T PRK08360 172 CYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEP-IQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGL 250 (443)
T ss_pred cccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 6655443322334445777888888652 46899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|.+++++.+++.||++++||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.++++
T Consensus 251 gr~G~~~a~~~~~~~pDiitlsK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~l~~l~~~ 323 (443)
T PRK08360 251 GRTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIGRAEIMDSLPP------LAHAFTLSGNPVASAAALAVIEEIEEK 323 (443)
T ss_pred CcCccchhhhhcCCCCCEEEecccccCC-ceeEEEEEcHHHHhhhcC------CCCCCCCCcCHHHHHHHHHHHHHHHHc
Confidence 9999887877889999999999999998 799999999999888764 347889999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeec-CCEEEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-GNTVYL 403 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~ 403 (430)
++.+++++++++++++|+++ ..++.+..+++.|+++++++. ++... ....+..+.+.|+++|+++.+. ++.+||
T Consensus 324 ~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~~gie~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~ 402 (443)
T PRK08360 324 NLLKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLMIGVDLV-KDRETKERAYEEAAKVVWRAWELGLIVTFFSGNVLRI 402 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEe-cCCcccCccHHHHHHHHHHHHHCCeEEeecCCCEEEE
Confidence 99999999999999999988 567888899999999999997 54211 1123567889999999998764 589999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|++++|+++|++++++|++++.++
T Consensus 403 ~P~l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 403 QPPLTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999765
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-61 Score=472.00 Aligned_cols=397 Identities=26% Similarity=0.391 Sum_probs=338.5
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+..
T Consensus 13 ~~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~ 89 (420)
T TIGR00700 13 VTLPVFAARAEGA---ILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIA 89 (420)
T ss_pred CCCCeeEEeeeee---EEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhC
Confidence 3468899999888 7999999999999999999999999999999999999987654433466788889999999998
Q ss_pred CC-CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCC
Q psy14484 91 QY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~-~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (430)
|. ..++++|++||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++.. .++..+.++..+...+++
T Consensus 90 p~~~~~~v~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (420)
T TIGR00700 90 PGSGPKKSVFFNSGAEAVENAVKIARSYT------GRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPL 163 (420)
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHHhc------CCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCC
Confidence 63 35799999999999999999999986 78899999999999999999887653 456666666667777888
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHH--hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLK--KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
|+.++.........+ ..+++.+++.+. ..++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||||+
T Consensus 164 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iAavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t 241 (420)
T TIGR00700 164 PYPYRDGLLDKQLST-DGELAAARAIFVIDVGANNVAALVIEP-VQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT 241 (420)
T ss_pred CccccccccccchhH-HHHHHHHHHHHHhhcCCCcEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 765554322111121 235788888874 2357899999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||+|+|.+++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.++
T Consensus 242 g~gr~g~~~a~~~~~~~pDi~~lsK~l~~G-~pig~v~~~~~i~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~l~ 314 (420)
T TIGR00700 242 GFARTGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMDAPAP------GGLGGTYAGNPLACAAALAVLAIIE 314 (420)
T ss_pred CCcccchhHHHhhcCCCCCEEEeeccccCC-cceEEEEecHHHHhhcCC------CCcCCCCCcCHHHHHHHHHHHHHHH
Confidence 999999888888889999999999999998 799999999999887754 3478999999999999999999988
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC--ccchhHHHHHHHHHHHCCcEEeec---CCE
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPI---GNT 400 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~Gv~~~~~---~~~ 400 (430)
++++.+++++++++++++|+++ ..++.+..+++.|+++++++. +.. .+...++..+.+.|+++||++.|+ +++
T Consensus 315 ~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~~~ 393 (420)
T TIGR00700 315 SEGLIERARQIGRLVTDRLTTLKAVDPRIGDVRGLGAMIAVELV-DPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNI 393 (420)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEeeccceEEEEEEe-cCCCCCccHHHHHHHHHHHHHCCeEEeccCCCCCE
Confidence 8899999999999999999988 667777889999999999986 421 112334678888899999999886 479
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+||+|++.+++++|++++++|++++.
T Consensus 394 lRl~p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 394 IRFLPPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=450.54 Aligned_cols=390 Identities=23% Similarity=0.311 Sum_probs=326.7
Q ss_pred cccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHH
Q psy14484 4 IVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 83 (430)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (430)
.+.|+.....|.++.+++|+ |+||.|||+||||+.+||...|||+||.|++|+++++.++. .++.+++...+++
T Consensus 26 vra~~~v~~~P~fi~~g~Ga---~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~---~fg~Pte~Ei~~A 99 (432)
T COG0001 26 VRAFKSVGGYPIFIERGKGA---YLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGL---SFGAPTELEVELA 99 (432)
T ss_pred ccccCCCCCCCeeEEeccCC---eEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcC---CCCCCCHHHHHHH
Confidence 35677777899999999998 89999999999999999999999999999999999999865 3467889999999
Q ss_pred HHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCC--CccchhhhhccCC
Q psy14484 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN--IQSFKEIYTSLLN 161 (430)
Q Consensus 84 ~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~--~~~~~~~~~~~~~ 161 (430)
+.+.+++| ..+.|.|+||||||++.|+|+||.++ +|++|+.|+++|||+....+.-.+ ...+.
T Consensus 100 ell~~~~p-~~e~vrfvnSGTEAtmsAiRlARa~T------gR~kIikF~G~YHG~~D~~lv~agsg~~t~g-------- 164 (432)
T COG0001 100 ELLIERVP-SIEKVRFVNSGTEATMSAIRLARAYT------GRDKIIKFEGCYHGHSDSLLVKAGSGAATLG-------- 164 (432)
T ss_pred HHHHHhcC-cccEEEEecchhHHHHHHHHHHHHhh------CCCeEEEEcCCCCCCccHHHhhcCcCcccCC--------
Confidence 99999998 77999999999999999999999997 999999999999999765544322 11000
Q ss_pred CeeEeCCCCCCCCCC--CCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEE
Q psy14484 162 KTYIITTPDSRNINK--GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239 (430)
Q Consensus 162 ~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~l 239 (430)
.|.....+. .+....+.+||++++++++++.++++++||+|| +.++.|.+.|+++|+++|+++|++||++|
T Consensus 165 ------~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEP-v~gn~g~i~p~~~Fl~~Lr~lt~e~G~lL 237 (432)
T COG0001 165 ------SPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEP-VAGNMGVVPPEPGFLEGLRELTEEHGALL 237 (432)
T ss_pred ------CCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEecc-ccCCCCCCCCCHHHHHHHHHHHHHcCcEE
Confidence 011111111 011112235799999999999888999999999 99999999999999999999999999999
Q ss_pred EEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHH
Q psy14484 240 IADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 319 (430)
Q Consensus 240 i~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 319 (430)
|+|||.||| |.....+...++++||+.||+|.+||| +|+|++.+++++++.+.+ .++..+.+|+++||++++|++
T Consensus 238 I~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGG-lP~ga~gGr~eiM~~~~p---~g~vyqaGT~sgnplamaAG~ 312 (432)
T COG0001 238 IFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGG-LPIGAFGGRAEIMEQLAP---LGPVYQAGTLSGNPLAMAAGL 312 (432)
T ss_pred EEecchhhc-ccCCcccccccCcCcchhhhhhhhcCC-cceeeeccHHHHHhhhCC---CCCccccCCCCCcHHHHHHHH
Confidence 999999999 666667888999999999999999999 799999999999998886 557889999999999999999
Q ss_pred HHHHHHhh-cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHH
Q psy14484 320 ATLEIFNK-DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALK 389 (430)
Q Consensus 320 ~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~ 389 (430)
++|+.+.+ +..++++.+++++|++.|++. .++.....+...|.++.+.+. .... +..+....+.+.|++
T Consensus 313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~-~~~~~n~~da~~sd~~~~~~~~~~~l~ 391 (432)
T COG0001 313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFT-EEGVRNYADAKRSDVERFAKFFHHLLN 391 (432)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEec-CCCCCCHHHHHhhchHHHHHHHHHHHh
Confidence 99998876 568999999999999999887 666555577788899988887 4211 011123456669999
Q ss_pred CCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 390 NELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 390 ~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+||++.|.. +.. .++..||+++|++++++++++++++.
T Consensus 392 ~GV~l~ps~~ea~--flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 392 RGVYLAPSQFEAG--FLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred CCcccCCccccce--eeecccCHHHHHHHHHHHHHHHHHhh
Confidence 999999886 332 34778999999999999999998764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=472.27 Aligned_cols=398 Identities=27% Similarity=0.443 Sum_probs=338.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|+ |+||.|||+||||.+++|+.++||+||+|.+|++++++++.+.....+.++...+++++|.+.+|.
T Consensus 36 ~~~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~ 112 (451)
T PRK06918 36 IPTFAQSANGA---LVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPG 112 (451)
T ss_pred CCceEEecccc---EEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCC
Confidence 46888998887 899999999999999999999999999999999999998765544455688899999999999974
Q ss_pred CC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCC
Q psy14484 93 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 93 ~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (430)
.. ++++|++||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++. +.++..+.++..++.++|+|+
T Consensus 113 ~~~~~v~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (451)
T PRK06918 113 SFDKKVLFLNSGAEAVENAVKIARKYT------KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPY 186 (451)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHHHHHh------CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCc
Confidence 44 699999999999999999999986 8899999999999999999988764 345666677666777788876
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++.+.+...+.+....++.+++.+.. .++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||+|+||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EP-i~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~ 265 (451)
T PRK06918 187 EYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEP-VQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGF 265 (451)
T ss_pred cccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 655543332233333335556655532 256899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+|+|.+++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.++++
T Consensus 266 gr~g~~~a~~~~~v~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~------~~~~~T~~g~~l~~aaa~a~l~~i~~~ 338 (451)
T PRK06918 266 ARTGKYFAIEHFDVVPDLITVSKSLGAG-VPISGVIGRKEIMDESAP------GELGGTYAGSPLGCAAALAVLDIIEKE 338 (451)
T ss_pred CccCceehhHhcCCCCCEEeeehhhcCC-CccEEEEEcHHHHhccCC------CCcCcCCCcCHHHHHHHHHHHHHHHHC
Confidence 9999888888889999999999999998 799999999999887754 347899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC---ccchhHHHHHHHHHHHCCcEEeecC---CEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP---EQIETFSKKFFVAALKNELLLRPIG---NTV 401 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~a~~~~~~l~~~Gv~~~~~~---~~l 401 (430)
++.+++++++++++++|+++ ..++.+..+++.|.++.+++. .+. .....++..+.+.|+++||++.+++ +.+
T Consensus 339 ~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vrg~G~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~l 417 (451)
T PRK06918 339 NLNDRAIELGKVVMNRFEEMKNKYNCIGDVRGLGAMCAFELV-QDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVI 417 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCceeeccceeEEEEEEc-cCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCCCCEE
Confidence 99999999999999999988 567777788999999999885 332 1122346788899999999998864 799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||+|++.+++++|++++++|++++.++
T Consensus 418 rl~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 418 RVLMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred EEECCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=468.88 Aligned_cols=388 Identities=26% Similarity=0.431 Sum_probs=334.4
Q ss_pred ceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC-
Q psy14484 14 NLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY- 92 (430)
Q Consensus 14 ~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~- 92 (430)
|.++.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.......++...++++.|.+..|.
T Consensus 23 p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~ 99 (421)
T PRK06777 23 DFYAERAENA---TLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPID 99 (421)
T ss_pred CeeEEeeecC---EEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCC
Confidence 7899999888 799999999999999999999999999999999999998765544345678889999999998863
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
+.++++|++||+||++.|+|+++.++ +|.+||.+.++|||++.+++++++. ..++..+.++...+.++++|+.
T Consensus 100 ~~~~~~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (421)
T PRK06777 100 GPAKTAFFTTGAEAVENAVKIARAYT------GRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNE 173 (421)
T ss_pred CCceEEEeCCcHHHHHHHHHHHHHhh------CCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc
Confidence 46799999999999999999999986 8889999999999999999988765 3456666666666667777753
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
.... . ...+++.+++.+.+ .++++++|++|| +++++|..+++++|+++|+++|++||+++|+||||+||+
T Consensus 174 ~~~~---~----~~~~~~~l~~~~~~~~~~~~iaavi~Ep-v~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~g 245 (421)
T PRK06777 174 LHGV---S----VEEALSSVERLFKADIAPDQVAAILLEP-IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFA 245 (421)
T ss_pred ccCc---C----HHHHHHHHHHHHHhccCCCceEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCc
Confidence 3211 0 12367888888864 357899999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+++++.+++.||++++||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.+++++
T Consensus 246 r~g~~~~~~~~~~~pDiv~~sK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~~~p~~~aaa~a~L~~~~~~~ 318 (421)
T PRK06777 246 RTGKLFAMEYYDVKPDLITMAKSLGGG-MPISAVVGRAEVMDAPAP------GGLGGTYAGNPLAVAAALAVLDVIAEEK 318 (421)
T ss_pred cCCchhhhhhcCCCCCEEeeehhhcCC-CceEEEEEcHHHHhccCC------CCCCCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 999888888889999999999999988 799999999999887764 2477899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC--ccchhHHHHHHHHHHHCCcEEeecC---CEEEE
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG---NTVYL 403 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~ 403 (430)
+.+++++++++++++|+++ ..++.+..+++.|+|+.+++. ... ....+++..+.+.++++||++.+++ +++||
T Consensus 319 l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~-~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~g~~lr~ 397 (421)
T PRK06777 319 LCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMVAVEFN-DPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRF 397 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEEEEEEe-cCccCCccHHHHHHHHHHHHhCCeEEeecCCCCCEEEE
Confidence 9999999999999999998 567778889999999999886 421 1123456778888899999998863 79999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.|+++++++++++++++|++++.
T Consensus 398 ~ppl~i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 398 LYPLTIPDAQFSKALNILTRLLA 420 (421)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998874
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-61 Score=467.92 Aligned_cols=381 Identities=28% Similarity=0.448 Sum_probs=334.2
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|+.++++++.+... .+.++...+++++|++.
T Consensus 14 ~~~~~~~~~~~~G~---~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~L~~~ 89 (397)
T TIGR03246 14 YAPAPFIPVRGEGS---RVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGN-GYTNEPVLRLAKKLVDA 89 (397)
T ss_pred cCCCCceEEEeecC---EEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccC-ccCCHHHHHHHHHHHhh
Confidence 34678999999888 799999999999999999999999999999999999987543322 45678889999999998
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
.+ .++++|++||+|||+.|+++++.++..++.+++.+||.++.+|||++..++++++.+.++..+.+...+...++++
T Consensus 90 ~~--~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (397)
T TIGR03246 90 TF--ADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN 167 (397)
T ss_pred CC--CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC
Confidence 74 5799999999999999999999987666556788999999999999998888888766666666666666666554
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
|++++++.+. +++++|++|| +++++|..+|+++|+++|+++|++||+++|+||+|+|+|
T Consensus 168 -----------------d~~~l~~~l~---~~~aavi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~G 226 (397)
T TIGR03246 168 -----------------DLAAAKALIS---DKTCAVIVEP-IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVG 226 (397)
T ss_pred -----------------CHHHHHHHhc---cCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 7899999885 5799999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+++.+.+++.||++++||+++|| +|+|++++++++++.+.. ..+++||+++|++++++.++|+.+++++
T Consensus 227 r~G~~~a~~~~gv~pDi~t~~K~lggG-~pigav~~~~~i~~~~~~------~~~~~t~~~~p~~~aaa~a~l~~~~~~~ 299 (397)
T TIGR03246 227 RTGELYAYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKV------GTHGTTYGGNPLACAVAGKVLDLVNTPE 299 (397)
T ss_pred ccccchhhhhcCCCCCEEEeehhhhCC-cceeEEEEcHHHHHhccC------CCcCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999988888899999999999999988 799999999999887764 3477899999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCC
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 407 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~ 407 (430)
+.+++++++++++++|+++ ..++.+..+++.|.++.+++. +.. ...+..+++.|+++|+++.+.+ +.+||+|++
T Consensus 300 l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~-~~~---~~~~~~~~~~l~~~Gv~~~~~g~~~lR~~p~~ 375 (397)
T TIGR03246 300 LLAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLT-EAY---QGKAKQFVNAAAEEGVIALIAGPNVVRFAPSL 375 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEc-Cch---hhHHHHHHHHHHHCCeEEeecCCCEEEEeCCC
Confidence 9999999999999999988 556777788999999999886 421 1125689999999999998765 799999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+|+++|++++++|++++.++
T Consensus 376 ~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 376 VISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=466.28 Aligned_cols=389 Identities=26% Similarity=0.397 Sum_probs=335.8
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|. |+||.||++||||.+++|+.++||+||+|.+|++++++++.+.......++...+++++|.+..|.
T Consensus 22 ~~~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~ 98 (421)
T PRK09792 22 CNFFAQSAENA---TLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPV 98 (421)
T ss_pred CCeeEEecccc---EEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCC
Confidence 36888999888 799999999999999999999999999999999999998765544446788889999999998863
Q ss_pred -CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCeeEeCCCC
Q psy14484 93 -KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 93 -~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+.++++|++||+||++.|+|+++.++ ++.+||.+.++|||++.+++++++. +.++..+.++...+..+++|.
T Consensus 99 ~~~~~~~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~ 172 (421)
T PRK09792 99 SGQAKTAFFTTGAEAVENAVKIARAHT------GRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPS 172 (421)
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHhc------CCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCc
Confidence 34799999999999999999999875 7889999999999999999888764 346666666656667777775
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
..+.. ...++++.+++.+++. ++++++|++|| +++++|..+++++|+++|+++|++||+++|+||+++||
T Consensus 173 ~~~~~-------~~~~~~~~l~~~~~~~~~~~~iaavi~EP-vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~ 244 (421)
T PRK09792 173 DLHGI-------STQDSLDAIERLFKSDIEAKQVAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGF 244 (421)
T ss_pred ccccc-------cHHHHHHHHHHHHHhccCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 44321 1235789999998752 46899999999 89999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+|+|.+++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+++||++||++++++.+++++++++
T Consensus 245 gr~G~~~a~~~~~~~pDi~t~gK~l~~G-~pigav~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~l~~l~~~ 317 (421)
T PRK09792 245 ARTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGVVGNANIMDAPAP------GGLGGTYAGNPLAVAAAHAVLNIIDKE 317 (421)
T ss_pred CCCCchhHHHhcCCCCcEEEeehhhcCC-CceEEEEEcHHHHhccCC------CCcCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999988888889999999999999999 799999999999887754 247899999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--cchhHHHHHHHHHHHCCcEEeec---CCEEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--QIETFSKKFFVAALKNELLLRPI---GNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR 402 (430)
++.++++++++++++.|+++ ..+|.+..++|.|+++++++. ++.. .....+..+++.|+++|+++.+. ++.+|
T Consensus 318 ~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~-~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g~~~~~ir 396 (421)
T PRK09792 318 SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFN-DPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIR 396 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEec-CCccCCcchHHHHHHHHHHHHCCcEEeecCCCCCEEE
Confidence 89999999999999999998 668888899999999999997 5311 11123578999999999998754 47999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
|.|+++++++++++++++|++++.
T Consensus 397 l~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 397 FLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999875
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-61 Score=465.30 Aligned_cols=383 Identities=28% Similarity=0.431 Sum_probs=327.4
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc-
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT- 90 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 90 (430)
+.|.++.+++|. |+||.||++||||.+++|+.++||+||+|.+|+++++++..+.......++...+++++|.+..
T Consensus 16 ~~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~ 92 (412)
T TIGR02407 16 SFPTVFEKAKGS---TLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIIL 92 (412)
T ss_pred CCCceEEecccC---EEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhcc
Confidence 468899999888 7999999999999999999999999999999999999875444333456788899999999875
Q ss_pred -CCCCC-eEEE-cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 91 -QYKLG-HCFY-GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 91 -~~~~~-~v~~-~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
|.+.. ++.| ++||+||++.|+|+++.++ +|++||.++++|||++.+++++++.+.++..+.++...+.++|
T Consensus 93 ~~~~~~~~~~f~~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p 166 (412)
T TIGR02407 93 KPRGLDYKVQFPGPTGTNAVESALKLARKVT------GRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMP 166 (412)
T ss_pred CccCCCceEEEeCCCchHHHHHHHHHHhhhc------CCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECC
Confidence 22232 5666 5899999999999999885 7889999999999999999999887777777776666666777
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
+|+.... ..++++.+++.+.++. +++++|++|| +++++|.++|+++|+++|+++|++||++||+|||
T Consensus 167 ~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~aavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV 236 (412)
T TIGR02407 167 YDGYLGG---------DVDTIAYFEKLLEDSSSGVDLPAAVILET-VQGEGGINVASDEWLQRLEKLCRRHDILLIVDDI 236 (412)
T ss_pred CCCcccc---------chhHHHHHHHHHHhccCCCCceEEEEecc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEech
Confidence 6642211 1247888999997652 5789999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
|+||||+|.+|+++.+++.||++++||++++ | +|+|++++++++ +.+.. ..+++||++|+++++++.++|+
T Consensus 237 ~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G-~pigav~~~~~~-~~~~~------~~~~~T~~gnpl~~aaa~a~l~ 308 (412)
T TIGR02407 237 QAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYG-LPLALTLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALE 308 (412)
T ss_pred hhCCCccchhHHhcccCCCCCEEEechhccCCc-cceeEEEEchhh-hccCC------CccCCCCCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 7 799999999886 54432 3588999999999999999999
Q ss_pred H-HhhcCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--
Q psy14484 324 I-FNKDNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-- 398 (430)
Q Consensus 324 ~-~~~~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-- 398 (430)
. ++++++.+++++++++++++|+.+ ..++ .+..+++.|+++++++. +. ..+..+.+.|+++||++.+.+
T Consensus 309 ~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~-~~-----~~~~~~~~~~~~~Gv~v~~~~~~ 382 (412)
T TIGR02407 309 YYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECG-DG-----DLAGKIAKAAFENGLIIETSGPN 382 (412)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEec-Ch-----HHHHHHHHHHHHCCCEEeccCCC
Confidence 5 777889999999999999999988 5666 46688999999999997 42 224679999999999997653
Q ss_pred -CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 399 -NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 -~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+.+||+|++++|++|+++++++|++++++
T Consensus 383 ~~~lr~~p~l~~t~~~i~~~~~~l~~~l~~ 412 (412)
T TIGR02407 383 DEVIKLLPPLTIDEETLQQGLDILEQAVEE 412 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999864
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-61 Score=454.07 Aligned_cols=357 Identities=28% Similarity=0.485 Sum_probs=316.7
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|..+.+++|+ |+||.||++||||.+++|+.++||+||+|.+|+++++++..+... .+.++...+++++|++..
T Consensus 5 ~~~~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~~~~- 79 (364)
T PRK04013 5 RKRLRLVRGEGI---YVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELSKWV- 79 (364)
T ss_pred CCCccEEEeecC---EEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHHhhc-
Confidence 467888999888 799999999999999999999999999999999999998755433 567889999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
+.++++|++||+||++.|+|+++.++ ++++||+++.+|||++.+++++++.+.++..+.+...++.+++++
T Consensus 80 -~~~~v~~~~SGseA~e~Alklar~~~------gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~-- 150 (364)
T PRK04013 80 -NYEYVYMGNSGTEAVEAALKFARLYT------GRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFN-- 150 (364)
T ss_pred -CCCEEEEeCchHHHHHHHHHHHHHHh------CCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCC--
Confidence 56799999999999999999999885 788999999999999999999888877777777777777666665
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
|++++++.+. +++++|++|| +++++|..+|+++|+++|+++|++||+++|+||+++|+ |+
T Consensus 151 ---------------d~~~l~~~i~---~~~aAvivEp-i~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-Rt 210 (364)
T PRK04013 151 ---------------DVEAAKEAIT---KETAAVIFEP-IQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RT 210 (364)
T ss_pred ---------------CHHHHHHHhc---CCcEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CC
Confidence 6788888885 5899999999 99999999999999999999999999999999999999 99
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|++|+++.+++.||++++||+++|| +|+|+++.++++. . ..|++||++||++|+++.++|++++++++.
T Consensus 211 G~~~a~~~~gv~PDiv~~gK~lggG-~P~~a~~~~~~~~----~------~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~ 279 (364)
T PRK04013 211 GKFLAIEHYKVEPDIVTMGKGIGNG-VPVSLTLTNFDVE----R------GKHGSTFGGNPLACKAVAVTLRILRRERLV 279 (364)
T ss_pred CchhHHHhcCCCCCEEEecccccCC-ceeEEEEeccccc----C------CCcCCCCCcCHHHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999999999 7999999987751 1 248899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCC
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILN 410 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t 410 (430)
+++++. |+++. .+.+.+++|.|+|+++++. .. +..+.+.++++|+++.+.+ +++||.|++++|
T Consensus 280 ~~~~~~-------l~~l~-~~~v~~vRG~Gl~~gve~~-~~-------~~~i~~~~~~~Gll~~~~g~~vlr~~Ppl~it 343 (364)
T PRK04013 280 EKAGEK-------FIEIK-GERVVTTRGRGLMIGIVLK-KP-------VGKYVEELQNRGYLVHTAGQRVIRLLPPLIIS 343 (364)
T ss_pred HHHHHH-------HHHhc-cCcceeeeeCcEEEEEEeC-Cc-------HHHHHHHHHhCCcEEeeCCCCEEEEeCCcccC
Confidence 887764 23332 2567899999999999997 42 3568899999999998876 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14484 411 KNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 411 ~e~i~~~~~~l~~~l~~~~ 429 (430)
++|+++++++|++++++++
T Consensus 344 ~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 344 KDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999886
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=461.72 Aligned_cols=396 Identities=37% Similarity=0.691 Sum_probs=338.2
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL 94 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 94 (430)
..+.+++|. |+||.||++||||.+++|+.+|||+||+|.++++++++++.+.......++...+++++|.+.+|.+.
T Consensus 29 ~~~~~a~G~---~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 105 (427)
T TIGR00508 29 YPVESADGV---ELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNAL 105 (427)
T ss_pred ceEEeeeee---EEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 456777666 89999999999999999999999999999999999999876544445677888999999999988677
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCCCCCC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
++++|++||+||++.|+|+++.++..+|.+++.+||++.++|||.+.++.++++.. .++..+.+...+...++.|....
T Consensus 106 ~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 185 (427)
T TIGR00508 106 DCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRF 185 (427)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccc
Confidence 89999999999999999999998877777788999999999999999888887642 24444444444444555553211
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
. ..+..+|++++++.+.++++++++||+|| + ++++|...++.+|+++|+++|++||+++|+|||++|+||+|
T Consensus 186 ~------~~~~~~~~~~l~~~l~~~~~~vaavivEP-v~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G 258 (427)
T TIGR00508 186 D------EEWNEEAITPLAKLMELHSDEIAAVILEP-IVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTG 258 (427)
T ss_pred c------chhHHHHHHHHHHHHHhcCCcEEEEEEec-hhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCC
Confidence 0 12233578899999987667899999999 7 99999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
.+|+.+++++.||++++||+++||++|++++++++++++.+.. .....+.+++||.++|++++++.++|+.++++++.+
T Consensus 259 ~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~ 337 (427)
T TIGR00508 259 KLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISS-GEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQK 337 (427)
T ss_pred ccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhc-CCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 9889988999999999999999997799999999999888864 112345688999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHH
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKN 412 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e 412 (430)
++++++++|+++|+++...+.+..+++.|.++.+++. +... +..+++.|+++||++.+.++.+|++|++.+|++
T Consensus 338 ~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~-~~~~-----~~~~~~~l~~~Gv~~~~~~~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 338 QVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMY-KPVN-----VEELQKKFVEQGVWIRPFGKLIYVMPPYIITTE 411 (427)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEEC-CccC-----HHHHHHHHHHCCeEEEecCCEEEEECCCCCCHH
Confidence 9999999999999998555666789999999999987 4311 367899999999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
||++++++|++++++
T Consensus 412 ~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 412 QLQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-61 Score=431.72 Aligned_cols=389 Identities=31% Similarity=0.445 Sum_probs=328.3
Q ss_pred cccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q psy14484 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (430)
....+...|.++.+++++ .++|.+|++||||+++||+..+||+||++.+++.+++.++.|.....+..+ ..++++.
T Consensus 31 ~~~t~a~~pv~~~~gkg~---kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~ 106 (433)
T KOG1401|consen 31 IVSTYARYPVVIESGKGS---KLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEV 106 (433)
T ss_pred EeeecCCCceeeecceee---eeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHH
Confidence 456778899999999888 699999999999999999999999999999999999999988876666666 7788888
Q ss_pred HHhhcC-CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCee
Q psy14484 86 LSSLTQ-YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTY 164 (430)
Q Consensus 86 l~~~~~-~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
|.+..+ ...++|+|++||||||+.|+|+++..+..+....+.++|.|.++|||.+.+++++.++..|+.++.|..+++.
T Consensus 107 l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~ 186 (433)
T KOG1401|consen 107 LSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVV 186 (433)
T ss_pred HHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCcee
Confidence 888773 3678999999999999999999998765544334467999999999999999999998888888887766666
Q ss_pred EeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 165 IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
...+ ||..++++.++.+.+.+++||+|| ++++||.++++++|+..|+++|+++|++||.|||
T Consensus 187 ~~~y-----------------nd~t~l~k~~~~h~~~IaAVIvEP-iqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV 248 (433)
T KOG1401|consen 187 TAEY-----------------NDSTALEKLFESHKGEIAAVIVEP-IQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEV 248 (433)
T ss_pred eccc-----------------CCHHHHHHHHHhCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHhhcCceEEeehh
Confidence 5544 389999999999877899999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|+||+|+|..|+.+.++++|||.|++|.|+|| +|+|++++++++++.+.+ ..++.|++||++||++|.++..+|+.
T Consensus 249 ~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gG-lPigA~~v~~kV~~~i~~---~~~l~hg~Tf~gnpLacsa~~~~l~~ 324 (433)
T KOG1401|consen 249 QTGLGRLGYGWAQEYFGVTPDITTVAKPLGGG-LPIGATGVRDKVAEMISP---GDHLYHGGTFSGNPLACSAGIKVLDE 324 (433)
T ss_pred hhCccccchHHHHHHhCcCCcceeehhhccCC-ceeEEEeehHHHHhhcCC---CCccccCcccCCChhhhhHHHHHHHH
Confidence 99999999999999999999999999999999 899999999999999987 33488999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----- 397 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----- 397 (430)
+.++++++++....+.|++.+.+. ...+. +....++|+++++.+. ... ..+.+...+.|.++.+.
T Consensus 325 l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~-~p~-------~~~~d~~~~~~ll~~~~~~~~~ 396 (433)
T KOG1401|consen 325 LKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFE-GPV-------YKFADAAREQGLLILTLGKGLL 396 (433)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEe-ech-------hhhhhhhhhhhHHHHHHhcccc
Confidence 999999999999999999999776 55554 3344889999998876 321 11222222222222221
Q ss_pred CCEEEEeC----CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 GNTVYLMP----PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ~~~lR~~~----~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
...+|+.| ...+++|.+++.++++.+.+.++
T Consensus 397 ~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~~~ 431 (433)
T KOG1401|consen 397 EEGVRIAPIYLLTVEHTPEVIQRLLTILEKVLSAL 431 (433)
T ss_pred cceEEEeccccccccCcHHHHHHHHHHHHHHHHHh
Confidence 13456666 22346899999999999998875
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-60 Score=502.67 Aligned_cols=396 Identities=22% Similarity=0.337 Sum_probs=336.9
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|. |+||.||++||||.++ +.++||+||+|.+|++++++++.. ...+.++...+++++|.+.+|
T Consensus 605 ~~p~~i~~g~G~---~l~D~dG~~ylD~~~g--~~~lGH~hp~v~~Ai~~q~~~l~~--~~~~~~~~~~~lAe~L~~~~p 677 (1013)
T PRK06148 605 SDPIKFVRGWGV---WLIDNRGRAYLDCFNN--VCHVGHAHPRVVAAAARQAARLNT--NTRYLHDAIVAYAERLTATLP 677 (1013)
T ss_pred CCCceEEEeeec---EEEECCCCEEEEcccC--hhhcCCCCHHHHHHHHHHHhhcCC--cCCcCCHHHHHHHHHHHHhCC
Confidence 568899999887 8999999999999998 478999999999999999988632 235678999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhcc-CCCeeEeCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL-LNKTYIITTPD 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 170 (430)
.+.++++|++||+||++.|+|+++.++ ++.+||+++++|||++.+++++++.. ++.++.+. ..++..++.|+
T Consensus 678 ~~~~~v~f~nSGsEA~e~AlklAr~~t------Gr~~ii~~~~~YHG~t~~a~s~s~~~-~~~~~~~~~~~~~~~~~~p~ 750 (1013)
T PRK06148 678 DGLTVAFFVNSGSEANSLALRLARAHT------GQRDAIVLDHAYHGTTTELIDLSPYK-FNRKGGKGRPDHVEVAEVPD 750 (1013)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHhc------CCCeEEEEcCCccCCCcchhhcCchh-hcccCCCCCCCCceEcCCCC
Confidence 667899999999999999999999986 88999999999999999988887633 34333332 34445666776
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHH---hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLK---KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
.++.+++....+......+.+++.++ ..++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||||+|
T Consensus 751 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EP-v~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtG 829 (1013)
T PRK06148 751 SYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAES-IPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVG 829 (1013)
T ss_pred ccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence 66666543323333334555665554 2346899999999 9999999999999999999999999999999999999
Q ss_pred CCCccc-ccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 248 CGRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 248 ~g~~g~-~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
|||+|. +|+++++++.|||+|+||+|+|| +|+|++++++++++.+.. + ..+.+||++||++|+++.++|++++
T Consensus 830 fGRtG~~~~a~e~~gv~PDivt~gK~lggG-~Plgav~~~~ei~~~~~~-g----~~~~~Tf~gnpla~aaa~a~L~~i~ 903 (1013)
T PRK06148 830 FGRVGSHWWAFETQGVVPDIVTMGKPIGNG-HPMGAVVTTREIADSFDN-G----MEYFNTFGGNPVSCAIGLAVLDIIE 903 (1013)
T ss_pred CCCCCCcchhhhhcCCCcceeeecccccCC-cceEEEEEcHHHHhhccC-C----CccccCCCCCHHHHHHHHHHHHHHh
Confidence 999996 78999999999999999999999 699999999999988764 1 2367999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeecC---C
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPIG---N 399 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~~---~ 399 (430)
++++.+++++++++|+++|+++ .+++.+..++|.|+|+++++. .+..+ ....+..+++.|+++||++.+.+ +
T Consensus 904 ~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gvel~-~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~ 982 (1013)
T PRK06148 904 DEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIELV-TDRKTKAPATAIARYVKNGARERGILIGTEGPHDN 982 (1013)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeeceEEEEEec-CCccccCccHHHHHHHHHHHHhCCeEEeccCCCCC
Confidence 9999999999999999999998 678888899999999999997 54321 12345789999999999998754 8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++||.|++++|+++|++++++|++++.++.
T Consensus 983 vlr~~Ppl~it~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 983 VLKIRPPLIFSRADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998764
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=463.56 Aligned_cols=385 Identities=28% Similarity=0.419 Sum_probs=327.8
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|+++++++..+.......++...+++++|.+.++
T Consensus 20 ~~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~ 96 (425)
T PRK09264 20 SFPVVFDKAKGS---WLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETIL 96 (425)
T ss_pred CCCccEEeeecC---EEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhc
Confidence 468899999887 89999999999999999999999999999999999998754443334567888899999998753
Q ss_pred --CCCC-eEEE-cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 92 --YKLG-HCFY-GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 92 --~~~~-~v~~-~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
.+.+ ++.| ++||+||++.|+|+++.++ +|.+||++.++|||++.+++++++.+.++..+.+...+..++|
T Consensus 97 ~~~~~~~~~~f~~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p 170 (425)
T PRK09264 97 KPRGLDYKVQFTGPTGTNAVEAALKLARKVT------GRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMP 170 (425)
T ss_pred CCcCCCceEEEeCCCHHHHHHHHHHHHHHhc------CCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeC
Confidence 2233 5766 5899999999999999985 7889999999999999999999887777777776666777787
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
+|+.++. ..+|++++++.++++. +++++||+|| +++++|.++|+++|+++|+++|++||+++|+|||
T Consensus 171 ~~~~~~~---------~~~~~~~l~~~l~~~~~~~~~~aavi~Ep-v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV 240 (425)
T PRK09264 171 YDGYFGG---------DVDTLAYLEKLLEDSSSGVDLPAAVIVET-VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDI 240 (425)
T ss_pred CCCcccc---------chhHHHHHHHHHHhccCCCCceEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEech
Confidence 7753221 1248889999997642 4799999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHH-
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATL- 322 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l- 322 (430)
|+||||+|.+++++.+++.||++++||++++ | +|+|++++++++ ..+.. ..+++||++||++++++.+++
T Consensus 241 ~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G-~pigav~~~~~i-~~~~~------~~~~~T~~gnp~~~aaa~a~l~ 312 (425)
T PRK09264 241 QAGCGRTGTFFSFERAGITPDIVTLSKSISGYG-LPMALVLIKPEL-DVWKP------GEHNGTFRGNNLAFVTATAALE 312 (425)
T ss_pred hhCCccccHHHHHhhcCCCCCEEEeccccCCCc-cceEEEEEchhh-hccCC------CccCCCCCCCHHHHHHHHHHHH
Confidence 9999999998888999999999999999998 6 799999999887 34432 347889999999999999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--
Q psy14484 323 EIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-- 398 (430)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-- 398 (430)
++++++++.+++++++++++++|+++ ..++. ...+++.|+++++++. +. ..+..+++.+.++||++.+.+
T Consensus 313 ~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~-~~-----~~~~~l~~~~~~~Gv~~~~~~~~ 386 (425)
T PRK09264 313 EYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFG-DG-----ELAGKIAAEAFENGLIIETSGPE 386 (425)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEec-Ch-----HHHHHHHHHHHHCCCEEeccCCC
Confidence 66667789999999999999999988 45664 3678899999999987 42 224678999999999998754
Q ss_pred -CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 399 -NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 399 -~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
..|||+|++++|+++|++++++|++++.++.
T Consensus 387 ~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~~~ 418 (425)
T PRK09264 387 DEVVKLLPPLTIDEEELEEGLDILEEAVAEVL 418 (425)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999998753
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-60 Score=460.91 Aligned_cols=399 Identities=22% Similarity=0.365 Sum_probs=322.3
Q ss_pred CCcee--EEeecCCceeEEEEC-CCCEEEecccccccccCCCCCHHHHH--HHHHHHhhccc--cccCCCCCHHHHHHHH
Q psy14484 12 SNNLV--IRSLKNSWKWSLIDV-SGKRYLDAISSWWVNLFGHSNSYINK--ALKNQLNKLEH--VMLSNLTHKPVIKLSE 84 (430)
Q Consensus 12 ~~~~~--~~~~~~~~~~~~~d~-~g~~~lD~~~~~~~~~lG~~~p~v~~--a~~~~~~~~~~--~~~~~~~~~~~~~l~~ 84 (430)
+.|++ +.+++|+ |+||. ||++||||.+++|+.+|||+||+|.+ ++++++.+..+ .....+.++...++++
T Consensus 23 ~~p~~~~i~~a~G~---~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~ 99 (443)
T PRK08297 23 GFDLVLDLERSQGS---YLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVD 99 (443)
T ss_pred CCCcceEEEeccCC---EEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHH
Confidence 34555 6788777 89995 99999999999999999999999999 99999987643 2233567788899999
Q ss_pred HHHhhc-CCCCCeEEEcCCchHHHHHHHHHHHHhhhh----cCC--CCCcEEEEEcCCCCCcchhhhccCCCccchhhhh
Q psy14484 85 KLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYN----KGF--LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 157 (430)
Q Consensus 85 ~l~~~~-~~~~~~v~~~~sgteA~~~al~~~~~~~~~----~g~--~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~ 157 (430)
+|.+.. |.+.++++|++||+||++.|+|+++.+++. +|. ++|.+||.+.++|||++.+++++++.+.++..+.
T Consensus 100 ~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~ 179 (443)
T PRK08297 100 TFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARF 179 (443)
T ss_pred HHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccC
Confidence 999987 546789999999999999999999988642 454 3578999999999999999999887543322222
Q ss_pred ccCCCeeEeCCCCCCCCCC-C---CChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 158 SLLNKTYIITTPDSRNINK-G---NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
+.. ....++.|... .+. . .+...+..++++++++.+.++++++++||+|| +++++|.++|+++|+++|+++|+
T Consensus 180 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EP-i~g~~G~~~pp~~yl~~lr~lc~ 256 (443)
T PRK08297 180 PKF-DWPRIDNPKLR-FPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEP-IQGEGGDNHFRPEFFAAMRELCD 256 (443)
T ss_pred CCC-CccccCCCCCC-CCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHH
Confidence 211 11122222211 110 1 11334556789999999987778999999999 99999999999999999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHH
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 313 (430)
+||++||+||||+||||+|.+|+++++++.||++++||+++ +|+++.++++.+.... .......|++||++||+
T Consensus 257 ~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~-----~~a~l~~~~i~~~~~~-~~~~~~~~~~T~~gnpl 330 (443)
T PRK08297 257 EHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGRRVDEVEDN-VFAVSSRINSTWGGNLV 330 (443)
T ss_pred HcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc-----ccceecchHHHHhhhh-hccCccccCCCCCccHH
Confidence 99999999999999999999999999999999999999973 4556666654432211 00011248899999999
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 314 ~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
+++++.++|+.++++++.+++++++++++++|+++ .+++.+. .+++.|+++++++. +. .....+++.|+++|
T Consensus 331 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i~~~-~~-----~~~~~~~~~l~~~G 404 (443)
T PRK08297 331 DMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAFDLP-TT-----ADRDEVIRRLWEEG 404 (443)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEEEec-CH-----HHHHHHHHHHHHCC
Confidence 99999999999988999999999999999999998 5677654 88999999999997 41 22467999999999
Q ss_pred cEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 392 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 392 v~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++.+.+ +.+||+|++.+|++||++++++|++++.++
T Consensus 405 vl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 405 VLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred EEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 9998876 789999999999999999999999999875
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=459.58 Aligned_cols=388 Identities=22% Similarity=0.330 Sum_probs=315.1
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHH--HhhccccccCCCCCHHHHHHHHHHHh-
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQ--LNKLEHVMLSNLTHKPVIKLSEKLSS- 88 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~- 88 (430)
+.|+++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++ ...+.+. +.+.++...++++.|.+
T Consensus 39 ~~p~~~~~a~G~---~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~--~~~~~~~~~~la~~l~~~ 113 (464)
T TIGR00699 39 HFLADYEKSRGN---YLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINR--PALGNFPSKDWAKILKEG 113 (464)
T ss_pred ccceEEEecccC---EEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccc--ccCCcHHHHHHHHHHHHh
Confidence 568899999888 799999999999999999999999999999999985 3332222 24566777788888754
Q ss_pred ---hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC-------------------CC--CcEEEEEcCCCCCcchhhh
Q psy14484 89 ---LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF-------------------LN--KKKFICLQNSYHGETLGAL 144 (430)
Q Consensus 89 ---~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~-------------------~~--~~~vl~~~~~yhg~~~~~~ 144 (430)
..|.+.++++|++||+||++.|+|+++.+++.+++ ++ +.+||.+.++|||++.+++
T Consensus 114 l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~al 193 (464)
T TIGR00699 114 ILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSL 193 (464)
T ss_pred HHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHH
Confidence 66656789999999999999999999988654321 12 3489999999999999999
Q ss_pred ccCCCccchhhhhccCCCeeEeCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCC
Q psy14484 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG---NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYD 221 (430)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~ 221 (430)
++++.+.++.. .+......++++|. .+.+.. ...+....++++++++++.++++++++||+|| +++++|.++|+
T Consensus 194 s~t~~~~~~~~-~~~~~~~~~~p~p~-~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EP-v~g~~G~~~~~ 270 (464)
T TIGR00699 194 STTRSKPIHKL-DIPAFDWPQAPFPS-LKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEP-IQSEGGDNHAS 270 (464)
T ss_pred HhcCCcccccc-CCCCCCceecCCCC-cccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeC-CCCCCCCcCCC
Confidence 98876544333 22223445666664 222111 11133456789999999987667899999999 99999999999
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC--CceeeeecccC-CCccccEEEEEcHHHHHhhhccCC
Q psy14484 222 SIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNN 298 (430)
Q Consensus 222 ~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~--~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~ 298 (430)
++|+++|+++|++||++||+|||++||||+|.+|+++++++. ||++|+||+++ ||+ . +.+ +. +..
T Consensus 271 ~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg~gG~-~----~~~-~~---~~~--- 338 (464)
T TIGR00699 271 PDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQTAGY-F----FHD-PA---FRP--- 338 (464)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhccCCc-c----ccc-hh---ccC---
Confidence 999999999999999999999999999999999999999997 99999999996 563 2 222 22 211
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEe--ecceEEEEEEeecCCc
Q psy14484 299 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHP-KIINFR--QKGMIWAFDVIIEDPE 374 (430)
Q Consensus 299 ~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~--~~g~~~~~~~~~~~~~ 374 (430)
.....+++||.+||++++++.++|+.++++++.+++++++++|+++|+++ .+++ .+..++ +.|+|+.+++. +
T Consensus 339 ~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~-~--- 414 (464)
T TIGR00699 339 NKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTP-D--- 414 (464)
T ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecC-C---
Confidence 12345889999999999999999999999999999999999999999998 5688 677888 99999999886 3
Q ss_pred cchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...+..+.+.++++|+++.+.+ +.+||.|++++|++||++++++|++++
T Consensus 415 --~~~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 415 --EAKRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred --HHHHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 1225789999999999998876 799999999999999999999998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-60 Score=457.75 Aligned_cols=375 Identities=27% Similarity=0.422 Sum_probs=319.4
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|+ |+||.||++||||.+++++.+|||+||+|.+|+++++++..+... ...+++..+++++|.+.
T Consensus 15 ~~~~~~~~~~~~G~---~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~~ 90 (395)
T PRK03715 15 TNRPDIVFTHGKGS---WLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQH 90 (395)
T ss_pred cCCCCceEEeeecC---EEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhhc
Confidence 34567889999888 799999999999999999999999999999999999987654432 45578888999999887
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
. ..++++|++||+||++.|+++++.+++ ++.+++.+||+++++|||++.+++++++.+.++..+.+...++..+++
T Consensus 91 ~--~~~~v~f~~SGseA~e~Aik~ar~~~~-~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~- 166 (395)
T PRK03715 91 S--CFDKVFFANSGAEANEGAIKLARKWGR-KHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAEL- 166 (395)
T ss_pred c--CCCEEEEeCCcHHHHHHHHHHHHHHhh-ccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCC-
Confidence 5 467999999999999999999998754 333577899999999999999999988877666655554444433333
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
+|++++++.+. +++++|++|| +++++|.++|+++|+++|+++|++||+++|+||+|+|||
T Consensus 167 ----------------~d~~~l~~~l~---~~~aavi~Ep-v~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~G 226 (395)
T PRK03715 167 ----------------NDIASVEKLIT---DKTVAVMLEP-VQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCG 226 (395)
T ss_pred ----------------chHHHHHHHcC---CCceEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 28899998885 5799999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+|+++++++.||++|+||+++|| +|+|++++++++.. +.. ..+++||+++|++++++.++|+.+++++
T Consensus 227 RtG~~~a~~~~gv~PDi~t~gK~lg~G-~p~~av~~~~~i~~-~~~------~~~~~T~~g~pl~~aaala~L~~l~~~~ 298 (395)
T PRK03715 227 RTGTLFAYELSGIEPDIMTLGKGIGGG-VPLAALLAKAEVAV-FEA------GDQGGTYNGNPLMTAVGVAVISQLLAPG 298 (395)
T ss_pred CCcchhhHhhcCCCCceeeehhhhhCC-cceEEEEEcccccc-ccC------CCcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999 79999999999852 222 1378999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC---CcEEeec-CCEEEEe
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN---ELLLRPI-GNTVYLM 404 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~---Gv~~~~~-~~~lR~~ 404 (430)
+.+++++++++|+++|+++ ..++ +..+++.|+|+.+++. ++. +..+.+.+.+. |+++.+. ++.+||+
T Consensus 299 l~~~~~~~g~~l~~~L~~l~~~~~-i~~vrG~Glm~~i~l~-~~~------~~~~~~~~~~~~~~Gi~~~~~~~~~lR~~ 370 (395)
T PRK03715 299 FLEGVRARGEYLKEKLLELSEERG-LEGERGEGLLRALLLG-KDI------GPQIVEKARDMQPDGLLLNAPRPNLLRFM 370 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-cCeEEcceeEEEEEec-Cch------HHHHHHHHHhccCCCEEEeecCCCEEEEe
Confidence 9999999999999999988 4444 5678999999999997 421 23444445445 9998754 5899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++.+|++||++++++|++++.++
T Consensus 371 p~l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 371 PALNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=459.33 Aligned_cols=380 Identities=26% Similarity=0.403 Sum_probs=332.4
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|. |+||.||++||||.+++|+++|||+||+|.+|+++++.++.+... .+.++...+++++|++..
T Consensus 19 ~~~~~~~~~~~G~---~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~ 94 (406)
T PRK12381 19 APAPFIPVRGEGS---RLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN-GYTNEPVLRLAKKLIDAT 94 (406)
T ss_pred CCCCceEEEeecC---EEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC-ccCCHHHHHHHHHHHhhC
Confidence 4567899999888 799999999999999999999999999999999999987644332 456788889999999987
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
..++++|++||+||++.|+|+++.++..++.+++.+|+.++++|||++.+++++++.+.++..+.++..+...++++
T Consensus 95 --~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (406)
T PRK12381 95 --FADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYN- 171 (406)
T ss_pred --CCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCC-
Confidence 45799999999999999999999987666656788999999999999999989888777776666665555555554
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
|++++++.+. +++++|++|| +++++|.++|+++|+++|+++|++||+++|+||+|+|+|+
T Consensus 172 ----------------d~~~l~~~l~---~~~aaviiEP-v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr 231 (406)
T PRK12381 172 ----------------DLNSASALID---DQTCAVIVEP-IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGR 231 (406)
T ss_pred ----------------CHHHHHHhcc---CCeeEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCC
Confidence 7889998885 5799999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++++..++.||+++|||+++|| +|+|++++++++++.+.. ..+++||+++|++++++.++|+.++++++
T Consensus 232 ~G~~~~~~~~~v~pDi~t~sK~l~gG-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~pl~~aaa~a~l~~l~~~~~ 304 (406)
T PRK12381 232 TGELYAYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTV------GTHGTTYGGNPLASAVAGKVLELINTPEM 304 (406)
T ss_pred CcchhhhHhhCCCCCEEEehhhhhCC-CceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH
Confidence 99887778889999999999999988 799999999999888764 35778999999999999999999888889
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
.++++++++++.++|+++ ..++.+..+++.|+++++++. +.. ...+..+.+.|+++||++.+.+ +.+||+|++.
T Consensus 305 ~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~-~~~---~~~~~~~~~~l~~~Gv~v~~~g~~~lRl~p~~~ 380 (406)
T PRK12381 305 LNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLN-AEY---AGKAKQISQEAAKAGVMVLIAGPNVVRFAPALN 380 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEec-Cch---hhHHHHHHHHHHHCCcEEeeCCCCEEEEeCCcc
Confidence 999999999999999988 456667788999999999887 421 1124678899999999998765 7999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|+++|++++++|++++.++
T Consensus 381 ~t~~~i~~~~~~l~~~l~~~ 400 (406)
T PRK12381 381 ISEEEITTGLDRFARACERF 400 (406)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=480.66 Aligned_cols=412 Identities=24% Similarity=0.429 Sum_probs=335.3
Q ss_pred CceeEEeecCC-ceeEEEECCCC----EEEecccccccccCC-CCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNS-WKWSLIDVSGK----RYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~d~~g~----~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
.+.++.+++|. +..|++|.||+ +|||+.++||+.++| |+||+|.+|+.+|+.++.+.+...+.++...+|+++|
T Consensus 339 ~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L 418 (817)
T PLN02974 339 SVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELL 418 (817)
T ss_pred CceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHH
Confidence 46888999884 33479999998 999999999999999 6899999999999999888776677899999999999
Q ss_pred HhhcCC-CCCeEEEcCCchHHHHHHHHHHHH-hhhhcCCC------------CCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 87 SSLTQY-KLGHCFYGSDGASAVEVALKMSFH-YWYNKGFL------------NKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 87 ~~~~~~-~~~~v~~~~sgteA~~~al~~~~~-~~~~~g~~------------~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+. ..++|+|++||+||++.|+|++++ ++..+|.+ +|.+||.+.++|||.+.+++++++.+.+
T Consensus 419 ~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~ 498 (817)
T PLN02974 419 LGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVF 498 (817)
T ss_pred HhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhh
Confidence 996542 267999999999999999999975 66666754 5789999999999999999999987766
Q ss_pred hhhh-hcc-CCCeeEeCCCCCC--------------CCCC----------------CCChhHHHHHHHHHHHHHHHh---
Q psy14484 153 KEIY-TSL-LNKTYIITTPDSR--------------NINK----------------GNSANEIARCAIFDLEILLKK--- 197 (430)
Q Consensus 153 ~~~~-~~~-~~~~~~~~~~~~~--------------~~~~----------------~~~~~~~~~~d~~~le~~l~~--- 197 (430)
+..+ .++ .....+++.|..+ +... .++..++....++.+++.|++
T Consensus 499 ~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~ 578 (817)
T PLN02974 499 TGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEA 578 (817)
T ss_pred hcccccccccCCCcccCCCccccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhcc
Confidence 6554 232 1122233333211 1000 001122333456788888864
Q ss_pred --CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCC
Q psy14484 198 --NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITG 275 (430)
Q Consensus 198 --~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~g 275 (430)
.++++++||+||++++.+|+++|+++|+++|+++|++||++||+|||++||||+|.+|+++++++.|||+|++|+|+|
T Consensus 579 ~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtg 658 (817)
T PLN02974 579 SAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTG 658 (817)
T ss_pred ccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeecccccC
Confidence 246899999999448999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHHH-Hchhc
Q psy14484 276 GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKAL-TSLIT 350 (430)
Q Consensus 276 G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~----~~~~~~~~~l~~~l-~~l~~ 350 (430)
|++|+|++++++++++.+..+.....+.|++||++||++|+++.++|++++++++. ++.+++..++.+.| +.+..
T Consensus 659 G~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~ 738 (817)
T PLN02974 659 GLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISS 738 (817)
T ss_pred CCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 98899999999999998863222245779999999999999999999999887544 44555566666777 44566
Q ss_pred CCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHH-HCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 351 HPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 351 ~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~-~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
++.+..+++.|+|+++++. ++... ....+..+++.++ ++|+++.+.++++|+.|++.++++++++++++|.+.|
T Consensus 739 ~p~V~~VRg~Gl~~~iel~-~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 739 LPNVERVVSLGTVLALELD-AEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCCeeEEEeeeeEEEEEEe-cCCcccccchHHHHHHHHHHHHhCCEEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999998 54321 1123567888899 9999999999999999999999999999999998876
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=455.26 Aligned_cols=370 Identities=28% Similarity=0.459 Sum_probs=325.5
Q ss_pred EeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeE
Q psy14484 18 RSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHC 97 (430)
Q Consensus 18 ~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 97 (430)
.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.+... .+.++...+++++|.+.. ..+++
T Consensus 2 ~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~--~~~~v 75 (382)
T PLN00144 2 VSGKGC---KLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASS--FADRV 75 (382)
T ss_pred eeeecc---EEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcC--CCCeE
Confidence 345555 899999999999999999999999999999999999998765433 345788899999999886 45799
Q ss_pred EEcCCchHHHHHHHHHHHHhhhhcCCCC-------CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 98 FYGSDGASAVEVALKMSFHYWYNKGFLN-------KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 98 ~~~~sgteA~~~al~~~~~~~~~~g~~~-------~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+|++||+||++.|+|+++.++..++.+. +.+||.+.++|||++.+++++++.+.++..+.+...++.+++++
T Consensus 76 ~f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~- 154 (382)
T PLN00144 76 FFCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG- 154 (382)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-
Confidence 9999999999999999999876554322 57899999999999999999998877777777766666677665
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
|++++++.+. .+++++|++|| +++++|...++++|+++|+++|++||+++|+||+|+||+|
T Consensus 155 ----------------d~~~l~~~~~--~~~~aavi~eP-~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr 215 (382)
T PLN00144 155 ----------------NLEAARKLIQ--KGKTAAVFVEP-VQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGR 215 (382)
T ss_pred ----------------CHHHHHHhcC--CCCeEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 7899998885 36899999999 8999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|++++|++++++.++|++++++++
T Consensus 216 ~g~~~~~~~~~~~PDi~t~sK~l~~G-~pig~v~~~~~~~~~~~~------~~~~~T~~~~pl~~aaa~a~l~~i~~~~~ 288 (382)
T PLN00144 216 TGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINP------GDHGSTFAGGPLVCNAALAVLDKISKPGF 288 (382)
T ss_pred cchHhhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhchH
Confidence 99888877889999999999999999 799999999999888764 34789999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPY 407 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~ 407 (430)
.++++++++++++.|+++ ..+|.+..+++.|+++++++. .. +..+++.++++||++.+.+ +.+||+|++
T Consensus 289 ~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg~G~~~~l~l~-~~-------~~~~~~~~~~~Gv~i~~~~~~~~lrl~p~~ 360 (382)
T PLN00144 289 LASVAKKGEYLRELLRRKLGGNPHVKEVRGVGLLVGIQLD-VP-------AGPLVDACRDSGLLVLTAGKGDVVRLVPPL 360 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceeeecCceEEEEEec-Cc-------cHHHHHHHHHCCeEEeecCCCCEEEEeCCC
Confidence 999999999999999886 667777788999999999986 31 2578999999999998864 899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++++++++++++|++++.++
T Consensus 361 ~~~~~~i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 361 VISEAELEQAVEILADCLPAL 381 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=458.04 Aligned_cols=385 Identities=19% Similarity=0.264 Sum_probs=320.2
Q ss_pred ccccccc-CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHH
Q psy14484 4 IVYFKKK-SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKL 82 (430)
Q Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l 82 (430)
++++... .+.|.++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.. ....++...++
T Consensus 25 ~~~~~~~~~~~p~~~~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~l 98 (428)
T PRK12389 25 SRSYKAVGGGAPVVMERGKGA---YFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL---YGTPTELEIEF 98 (428)
T ss_pred cccccccCCCCCeEEEeccCC---EEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc---cCCCCHHHHHH
Confidence 4444322 2578999999888 799999999999999999999999999999999999987543 24678888999
Q ss_pred HHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh------hh
Q psy14484 83 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE------IY 156 (430)
Q Consensus 83 ~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~------~~ 156 (430)
+++|.+..| ..++++|++||+||++.|+|+++.++ +|.+||.+.++|||++.++++.++...++. .+
T Consensus 99 a~~l~~~~p-~~~~v~f~~sGseA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 171 (428)
T PRK12389 99 AKMLKEAIP-SLEKVRFVNSGTEAVMTTIRVARAYT------GRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGV 171 (428)
T ss_pred HHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCC
Confidence 999999887 67899999999999999999999986 889999999999999998888776432211 00
Q ss_pred h-ccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 157 T-SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
. ....+...+++ +|++.+++.+.++++++++||+|| +++++|.++|+++|+++|+++|++|
T Consensus 172 ~~~~~~~~~~~~~-----------------~d~~~l~~~l~~~~~~vaavi~EP-v~g~~G~~~p~~~yl~~l~~lc~~~ 233 (428)
T PRK12389 172 PKSIAQEVITVPF-----------------NDIEALKEALDKWGDEVAAVLVEP-IVGNFGIVEPKPGFLEAVNELAHEA 233 (428)
T ss_pred CCcccCceEEcCC-----------------CCHHHHHHHHHhcCCcEEEEEEeC-CCCCCCCcCCCHHHHHHHHHHHHHc
Confidence 0 11122233333 378999999987667899999999 9999999999999999999999999
Q ss_pred CCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy14484 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 315 (430)
Q Consensus 236 gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 315 (430)
|++||+|||++|| |++..++.+++++.||++|+||+++|| +|+|++++++++++.+.. .....+++||++||+++
T Consensus 234 g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG-~Pi~av~~~~~i~~~~~~---~~~~~~~~T~~gnpl~~ 308 (428)
T PRK12389 234 GALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIMEQVAP---LGPAYQAGTMAGNPASM 308 (428)
T ss_pred CCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCC-CceeEEeEHHHHHhhhcc---CCCcccccCCccCHHHH
Confidence 9999999999999 998777788899999999999999999 799999999999988753 12346889999999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeE-eecceEEEEEEeecCCcc--------chhHHHHHHH
Q psy14484 316 CAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQ--------IETFSKKFFV 385 (430)
Q Consensus 316 ~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------~~~~a~~~~~ 385 (430)
+++.++|+.++++++.+++++++++|+++|+++ .+++.+..+ ++.| ++.+++. .+... ....+..+.+
T Consensus 309 Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~r~~g-~~gi~~~-~~~~~~~~~~~~~~~~~~~~~~~ 386 (428)
T PRK12389 309 AAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHGITITINRLKG-ALTVYFT-DEKVTNYDQAERSDGEAFGKFFK 386 (428)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCc-EEEEEEe-CCCCCChhhhcccCHHHHHHHHH
Confidence 999999999988899999999999999999988 567765555 6777 7778876 43210 1123567889
Q ss_pred HHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 386 AALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 386 ~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.|+++||++.+.+ +. +.|++.+|++||++++++|++++.++
T Consensus 387 ~l~~~Gv~~~~~~~~~--~~~~l~~t~e~id~~~~~l~~~l~~~ 428 (428)
T PRK12389 387 LMLNQGINLAPSKYEA--WFLTTAHTEEDIEETLEAVDRAFAQL 428 (428)
T ss_pred HHHHCCcEeecCCCCC--eeecCCCCHHHHHHHHHHHHHHHHhC
Confidence 9999999998764 23 45799999999999999999998764
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=454.91 Aligned_cols=393 Identities=21% Similarity=0.262 Sum_probs=311.9
Q ss_pred ccccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHH
Q psy14484 3 NIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKL 82 (430)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l 82 (430)
+++.|....+.|+++.+++|+ |+||.||++||||.+++|+.+|||+||+|.++++++++++.. ....++...++
T Consensus 71 ~~r~~~~~~~~p~~~~~a~G~---~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~---~~~~~~~~~~l 144 (474)
T PLN02482 71 PVRAFKSVGGQPIVFDRVKGS---YAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTS---FGAPCLLENVL 144 (474)
T ss_pred cchhhcccCCCCeeEEEeeeC---EEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCC---CCCCCHHHHHH
Confidence 345554445678999999888 799999999999999999999999999999999999988653 24577888999
Q ss_pred HHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhh--ccCCCccchhhhhccC
Q psy14484 83 SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLL 160 (430)
Q Consensus 83 ~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~ 160 (430)
+++|.+.+| ..+++.|++||+||++.|+|+++.++ +|++||.+.++|||++.... ..++...+..+..+
T Consensus 145 Ae~l~~~~p-~~~~v~f~~SGsEA~e~AlklAR~~t------gr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~-- 215 (474)
T PLN02482 145 AEMVIDAVP-SVEMVRFVNSGTEACMGVLRLARAYT------GREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSP-- 215 (474)
T ss_pred HHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhc------CCCEEEEECCccCCCcchhhhhcCCCccccCCCCCC--
Confidence 999999998 57999999999999999999999986 89999999999999864322 22221111100000
Q ss_pred CCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy14484 161 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLI 240 (430)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li 240 (430)
.......++ ...+.+||++++++.+.++++++++||+|| +++++|.++|+++|+++|+++|++||++||
T Consensus 216 -g~~~~~~~~---------~~~~~~nd~~~l~~~l~~~~~~iAavI~Ep-v~g~~G~i~p~~~fl~~lr~lc~~~g~lLI 284 (474)
T PLN02482 216 -GVPKAATSA---------TLTAPYNDLEAVKKLFEANKGEIAAVILEP-VVGNSGFIVPKKEFLEGLREITKENGALLV 284 (474)
T ss_pred -CCCCCCCCC---------eEEecCCChHHHHHHHHhCCCceEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 000000000 001122488999999987777899999999 999999999999999999999999999999
Q ss_pred EeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHH
Q psy14484 241 ADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320 (430)
Q Consensus 241 ~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~ 320 (430)
+|||++|| |+|.+++.+++++.||++||||+++|| +|+|++++++++++.+.. ...+.+++||++||++++++.+
T Consensus 285 ~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG-~Pigav~g~~ei~~~~~~---~~~~~~~~T~~gnpl~~aAala 359 (474)
T PLN02482 285 FDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGG-LPVGAYGGRREIMEMVAP---AGPMYQAGTLSGNPLAMTAGIH 359 (474)
T ss_pred EeccccCe-ecCcchHhHHhCCCCCEEEecchhhCC-CceEEEEEcHHHHHhhcc---CCCcccccCcchhHHHHHHHHH
Confidence 99999999 999888888899999999999999999 799999999999988764 2346688999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCC
Q psy14484 321 TLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNE 391 (430)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~G 391 (430)
+|++++++++.+++++++++|+++|+++ .+++........+.++.+++. .+.. .....+..+.+.|+++|
T Consensus 360 ~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g~~~~~~~v~g~~gi~f~-~~~~~~~~~~~~~d~~~~~~~~~~l~~~G 438 (474)
T PLN02482 360 TLKRLQQPGTYEYLDKITKKLIQGILEAGKKAGHEMCGGYISGMFGFFFT-EGPVYNFADAKKSDTAKFARFHRGMLEEG 438 (474)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEcccceEEEEEEe-cCCccChhhhccCCHHHHHHHHHHHHHCC
Confidence 9999988899999999999999999988 443321111122237777775 4311 11123467889999999
Q ss_pred cEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 392 LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 392 v~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++.+.+...+ .|++.+|++|||++++++++++.++
T Consensus 439 v~~~~~~~~~~-~psl~ht~~dId~~l~al~~~l~~~ 474 (474)
T PLN02482 439 VYLAPSQFEAG-FTSLAHTEEDIDFTIAAAERVLARI 474 (474)
T ss_pred eEEeccCCCCC-cCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 99987542222 4899999999999999999998764
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=452.90 Aligned_cols=386 Identities=27% Similarity=0.426 Sum_probs=333.5
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|+++.+++|. |+||.||++||||.+++++.++||+||+|.+|++++++++.+... .+.++...++++.|++++
T Consensus 55 ~~~p~~~~~a~G~---~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~~ 130 (474)
T PLN02624 55 HPIPVVFSRAKGS---RIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSMF 130 (474)
T ss_pred CCCCceEEeeeeC---EEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhhc
Confidence 4568899999887 799999999999999999999999999999999999998765443 467888899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhh-cCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~-~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
+.++++|++||+||++.|+|+++.++.. +|.+ ++.+|+.+.++|||.+.+++++++.+.++..|.+...+..++++
T Consensus 131 --~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 208 (474)
T PLN02624 131 --GYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF 208 (474)
T ss_pred --CCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC
Confidence 4679999999999999999999987533 2322 45689999999999999999998877777777776666666655
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |++.+++.++..++++++|++|| +++++|.+.|+++|+++|.++|++||+++|+||+|+|+
T Consensus 209 ~-----------------d~~~l~~~l~~~~~~iaaiiiEp-v~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~ 270 (474)
T PLN02624 209 G-----------------DLDALEKIFEEDGDRIAAFLFEP-IQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGL 270 (474)
T ss_pred C-----------------CHHHHHHHHHhCCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc
Confidence 3 78999999986667899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|++|.++++++.++.||++++||++++|++|+|++++++++++.+.. ..+++|+++++++++++.++|+.++++
T Consensus 271 GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~------~~~~~T~~g~pl~~aaa~aaLe~l~~~ 344 (474)
T PLN02624 271 ARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKP------GEHGSTFGGNPLASAVAMAALQVVQDE 344 (474)
T ss_pred CcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhcc------CCcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99998888888899999999999999988899999999998877654 347889999999999999999988888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeC
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMP 405 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~ 405 (430)
++.+++.+++++++++|+++ ..++ .+..+++.|.++.+++. .... ....+.++++.|+++||++.|.+ +.+||+|
T Consensus 345 ~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~-~~~~-~~~~a~~~~~~L~e~GV~v~p~~~~~lR~~p 422 (474)
T PLN02624 345 KLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLN-SPKL-GPVSAYDVCLKLKERGLLAKPTHDTIIRLAP 422 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEec-CCCc-ChHHHHHHHHHHHhCCeEEecCCCCEEEEEC
Confidence 88999999999999999988 5666 36678899999998886 4321 11224678999999999999875 7899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.+|+++|++++++|++++.+-
T Consensus 423 ~l~~t~e~id~~l~~L~~~l~~~ 445 (474)
T PLN02624 423 PLSISEDELQECSKALSDVLEHD 445 (474)
T ss_pred CccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-58 Score=442.77 Aligned_cols=388 Identities=18% Similarity=0.283 Sum_probs=316.0
Q ss_pred cccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHH
Q psy14484 4 IVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 83 (430)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (430)
++++....+.|.++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|++++++++. .....++...+++
T Consensus 26 ~~~~~~~~~~p~~i~~a~G~---~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~~~~~~~~la 99 (433)
T PRK00615 26 VRACRSVGITPPIVSSASGD---IFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---SYGLTSEQEILFA 99 (433)
T ss_pred cccccccCCCCceEEEeeeC---EEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC---CCCCCCHHHHHHH
Confidence 44443334689999999888 79999999999999999999999999999999999998754 2346678889999
Q ss_pred HHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcc---hhhhccCCCccch--hhhhc
Q psy14484 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET---LGALAVTNIQSFK--EIYTS 158 (430)
Q Consensus 84 ~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~---~~~~~~~~~~~~~--~~~~~ 158 (430)
++|.+.+|...++++|++||+||++.|+|+++.++ +|.+|+.+.++|||++ ..+++.++..... ..+.+
T Consensus 100 ~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~t------gr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~ 173 (433)
T PRK00615 100 EELFSYLGLEDHKIRFVSSGTEATMTAVRLARGIT------GRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDT 173 (433)
T ss_pred HHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh------CCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCC
Confidence 99999987555799999999999999999999986 8899999999999987 5555544321100 00100
Q ss_pred cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCE
Q psy14484 159 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~ 238 (430)
.........+| .+|++++++.+.++.+++++||+|| +++++|.++|+++|+++|+++|++||++
T Consensus 174 ~~~~~~~~~~~---------------~~d~~~l~~~l~~~~~~~aavI~Ep-v~~~~G~~~p~~~yl~~l~~lc~~~g~l 237 (433)
T PRK00615 174 DLAHPLTLSLP---------------YNDFQIFQTVMNSLGHRVAGVIFEP-ICANMGVVLPKPGFIEGIIQTCRRTGSL 237 (433)
T ss_pred CCCCCCeEeCC---------------CCCHHHHHHHHHhcCCceEEEEECC-CCCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 00000111112 2378899999987667899999999 9999999999999999999999999999
Q ss_pred EEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 239 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 239 li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
+|+|||++|| |+|.+++.+++++.||++++||+++|| +|+|++++++++++.+.. .....+++|++++|++++++
T Consensus 238 lI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG-~p~~av~~~~~i~~~~~~---~~~~~~~~T~~g~p~~~aa~ 312 (433)
T PRK00615 238 SIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAP---EGTIFQAGTLSGNPLAMAAG 312 (433)
T ss_pred EEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCC-cceeeeeecHHHHhhhcC---CCCcccCCCCcccHHHHHHH
Confidence 9999999999 899888888899999999999999999 799999999999988754 12345788999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hc--CCCeeeEeecceEEEEEEeecCCcc--------chhHHHHHHHHH
Q psy14484 319 LATLEIFNKDNILQRISQDMKKITKALTSL-IT--HPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAA 387 (430)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~--~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~a~~~~~~l 387 (430)
.++|++++++++.+++++++++|.++|+++ .. ++ +..++ .|+++++++. .+... .......+++.|
T Consensus 313 la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r-~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 389 (433)
T PRK00615 313 KASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR-YGSMFSFFFN-ENRPNNLAEAQLSDIEAFQTFYQSA 389 (433)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe-eceEEEEEEe-CCCCCChHHHhhCCHHHHHHHHHHH
Confidence 999999988889999999999999999887 44 34 45556 8999999997 54211 112245789999
Q ss_pred HHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 388 LKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 388 ~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.++||++.+.. .. ..++..||++|||+++++++++++++.
T Consensus 390 ~~~Gv~~~~~~~~~--~~ls~~ht~~did~~~~a~~~~~~~~~ 430 (433)
T PRK00615 390 FSKGVYLSPSPFEA--SFLSSAHSMENLDYAQNVLIDSLEKVF 430 (433)
T ss_pred HHCCeeecCccccc--cceecCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999988653 11 245778999999999999999999874
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=445.91 Aligned_cols=394 Identities=22% Similarity=0.332 Sum_probs=316.1
Q ss_pred CCcee--EEeecCCceeEEEEC-CCCEEEecccccccccCCCCCHHHH--HHHHHHHhhcccc--ccCCCCCHHHHHHHH
Q psy14484 12 SNNLV--IRSLKNSWKWSLIDV-SGKRYLDAISSWWVNLFGHSNSYIN--KALKNQLNKLEHV--MLSNLTHKPVIKLSE 84 (430)
Q Consensus 12 ~~~~~--~~~~~~~~~~~~~d~-~g~~~lD~~~~~~~~~lG~~~p~v~--~a~~~~~~~~~~~--~~~~~~~~~~~~l~~ 84 (430)
+.|.+ +.+++|. |+||. ||++||||.+++|+.+|||+||+|. +|+++++.+..+. ......++...++++
T Consensus 16 ~~p~~~~~~~a~G~---~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~ 92 (431)
T TIGR03251 16 GFDLVLDLDRSRGS---VLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVD 92 (431)
T ss_pred CCceeeEEEeccCC---EEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHH
Confidence 44655 4888777 89996 9999999999999999999999999 9999999876432 223466778888999
Q ss_pred HHHhhc-CCCCCeEEEcCCchHHHHHHHHHHHHhhh----hcCCCC--CcEEEEEcCCCCCcchhhhccCCCccchhhhh
Q psy14484 85 KLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWY----NKGFLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYT 157 (430)
Q Consensus 85 ~l~~~~-~~~~~~v~~~~sgteA~~~al~~~~~~~~----~~g~~~--~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~ 157 (430)
+|.+.. +.+.++++|++||+||++.|+|+++.++. .+|.++ +.+||.+.++|||++.+++++++...++..+.
T Consensus 93 ~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 172 (431)
T TIGR03251 93 TFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARF 172 (431)
T ss_pred HHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCC
Confidence 998886 44678999999999999999999999863 346543 67899999999999999999887654544443
Q ss_pred ccCCCeeEeCCCCCCCCCCC----CChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 158 SLLNKTYIITTPDSRNINKG----NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
+.. ....++.|.. ..+++ ........++++++++.+.++++++++||+|| +++++|.++|+++|+++|+++|+
T Consensus 173 ~~~-~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEP-v~g~~G~~~~~~~~l~~l~~lc~ 249 (431)
T TIGR03251 173 PKF-DWPRIDNPKL-TFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEP-IQGEGGDNHFRPEFLRAMRALCD 249 (431)
T ss_pred CCC-CCccCCCCcc-cCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEec-cccCCCCcCCCHHHHHHHHHHHH
Confidence 322 1222333322 11111 11233446788999999987778999999999 99999999999999999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHH
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 313 (430)
+||++||+||||+|||++|.+|+++.+++.||++++||++ ++++++.++++.+.... .......+.+||++||+
T Consensus 250 ~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~-----~~~g~~~~~~i~~~~~~-~~~~~~~~~~T~~gnpl 323 (431)
T TIGR03251 250 EHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT-----QVCGIMAGRRVDEVADN-VFAVPSRLNSTWGGNLV 323 (431)
T ss_pred HcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC-----ccceEEecchHHHhhhh-cccCccccCCCCCCCHH
Confidence 9999999999999999999999999999999999999986 44555566554222210 00011247899999999
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 314 ~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
+++++.++|+.++++++.+++++++++++++|+++ .+++ .+..+++.|+++.+++. +. ..+..+++.|+++|
T Consensus 324 ~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~-~~-----~~~~~~~~~l~~~G 397 (431)
T TIGR03251 324 DMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLP-ST-----ADRDEVIRQLYREG 397 (431)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEEEEeC-CH-----HHHHHHHHHHHhCC
Confidence 99999999999988899999999999999999988 5677 67788999999999987 41 22467999999999
Q ss_pred cEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 392 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 392 v~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
|++.+.+ +.+||+|++.+|++||++++++|++
T Consensus 398 vl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 398 VLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred eEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence 9998876 7899999999999999999999876
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=441.87 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=326.8
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|+++.+++|. |+||.||++||||.+++|+++|||+||+|.+|++++++++.+... .+.++...+++++|++.
T Consensus 10 ~~~~~~~~~~~~G~---~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~ 85 (389)
T PRK01278 10 YNRADLAFERGEGV---WLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVEN 85 (389)
T ss_pred cCCCCceEEeeecC---EEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHhh
Confidence 34568899999888 799999999999999999999999999999999999987654332 35678889999999998
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
. ..++++|++||+||++.|+++++.++...|++++++||+++++|||++..+...++.+.+...+.+...++..++++
T Consensus 86 ~--~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (389)
T PRK01278 86 S--FADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFG 163 (389)
T ss_pred C--CCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCC
Confidence 7 45799999999999999999999887777777788999999999999999888887666554444444444444444
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
|++++++.++ +++++|++|| +++++|...++++++++|+++|++||+++|+||+|+|++
T Consensus 164 -----------------d~~~l~~~l~---~~~~avivep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 -----------------DIEALKAAIT---PNTAAILIEP-IQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred -----------------CHHHHHHhhC---CCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 7899999885 4799999999 999999899999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
++|.+++.+..++.||+++|||++++| +|+|++++++++++.+.. ..+++|+++++++++++.++|+.+++++
T Consensus 223 ~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~l~~~~ 295 (389)
T PRK01278 223 RTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTP------GTHGSTYGGNPLAMAVGNAVLDVILAPG 295 (389)
T ss_pred cCCcceeecccCCCCCEEEEehhccCC-cceEEEEEcHHHHhccCC------CCCCCCCCccHHHHHHHHHHHHHHhhhH
Confidence 999877777789999999999999988 799999999998887754 3577899999999999999999887778
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCC
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPP 406 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~ 406 (430)
+.+++++++++++++|+++ ..++ .+..+++.|.++++++. .+ +.++++.|+++||++.|++ +.+||+|+
T Consensus 296 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~-~~-------~~~~~~~l~~~GV~~~p~~~~~lR~~p~ 367 (389)
T PRK01278 296 FLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCV-VP-------NRDLVQALRDEGLLTVGAGDNVVRLLPP 367 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEe-cC-------HHHHHHHHHHCCeEEeecCCCEEEEeCC
Confidence 8899999999999999987 5566 56678899999998876 41 3679999999999999875 79999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+++++|++++++|++++.++
T Consensus 368 ~~~~~~~i~~~l~~l~~~l~~~ 389 (389)
T PRK01278 368 LIITEEEIDEALERLERAAESL 389 (389)
T ss_pred cccCHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-58 Score=443.09 Aligned_cols=374 Identities=27% Similarity=0.454 Sum_probs=322.7
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|+ |+||.||++||||.+++|+.+|||+||+|.+|+.++++++.+... ...++...+++++|+++
T Consensus 19 ~~~~p~~~~~~~G~---~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~ 94 (396)
T PRK04073 19 YHPLPIVISEAEGV---WVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAKL 94 (396)
T ss_pred cCCCCceEEeeeec---EEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhc
Confidence 34568899999887 799999999999999999999999999999999999998765432 45678888999999998
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhh-cCC-CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~-~g~-~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
.+ .++++|++||+||++.|+++++.+++. +|. +++++||.++.+|||++..++++++.+.++..+.+...+..+++
T Consensus 95 ~~--~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (396)
T PRK04073 95 TG--KDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIP 172 (396)
T ss_pred CC--CCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeC
Confidence 74 479999999999999999999987432 232 36789999999999999999888887666666666655666665
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
++ |++++++.++ +++++|++|| +++++|.+.|+++|+++|.++|++||+++|+||+|+|
T Consensus 173 ~~-----------------d~~~l~~~i~---~~~~~viiep-~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g 231 (396)
T PRK04073 173 YG-----------------DLEALKAAIT---PNTAAFLVEP-IQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTG 231 (396)
T ss_pred CC-----------------CHHHHHHhcc---cCeEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhC
Confidence 54 7888888885 5789999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|+++|..++++..++.||+++|||++++|++|+|++++++++++.+.. ..+.+||++++++++++.++|+.+++
T Consensus 232 ~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aaL~~~~~ 305 (396)
T PRK04073 232 LGRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTP------GSHGSTFGGNPLACAVSIAALEVLEE 305 (396)
T ss_pred CCcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999998777777889999999999999977899999999999887754 24678999999999999999998877
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCC
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPP 406 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~ 406 (430)
+++.++.+++++++.+.|+++ ..+.+..+++.|.|+.+++. .. +..+++.|+++||++.+.+ +++||+|+
T Consensus 306 ~~l~~~~~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~Gv~~~~~~~~~iRi~p~ 376 (396)
T PRK04073 306 EKLPERSLELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELN-EP-------ARPYCEALKEEGLLCKETHETVIRFAPP 376 (396)
T ss_pred cCHHHHHHHHHHHHHHHHHhh-cCCcccceecceEEEEEEec-ch-------HHHHHHHHHHCCeEEecCCCCEEEEECC
Confidence 889999999999999999887 33556677899999888876 31 3578899999999998765 79999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l 425 (430)
+.+|++++++++++|++++
T Consensus 377 l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 377 LVITKEELDWAFEKIKAVL 395 (396)
T ss_pred cccCHHHHHHHHHHHHHHh
Confidence 9999999999999998875
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-57 Score=441.87 Aligned_cols=378 Identities=19% Similarity=0.233 Sum_probs=310.7
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|+++.+++|+ |+||.|||+||||.+++|+.+|||+||+|.+|++++++++.. ....++...++++.|.+.+
T Consensus 56 ~~p~~~~~a~G~---~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~---~~~~~~~~~~lAe~l~~~~- 128 (453)
T PRK07046 56 PFPLFVAEARGA---RFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLT---TMLPSEDAAWVGEELARRF- 128 (453)
T ss_pred CCCCeEEeeeeC---EEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHHh-
Confidence 578999999888 799999999999999999999999999999999999987542 3567888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhcc--CCCccchhhhhcc----CCCeeE
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV--TNIQSFKEIYTSL----LNKTYI 165 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~----~~~~~~ 165 (430)
+.+++.|++|||||++.|+|++|.++ +|++|+.++++|||++...+.. ++.+.++..+... ......
T Consensus 129 -~~~~v~F~nSGtEA~e~AlrlAR~~T------Gr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 201 (453)
T PRK07046 129 -GLPYWQVATTATDANRFVLRWARAVT------GRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRV 201 (453)
T ss_pred -CCCEEEEECCHHHHHHHHHHHHHHhh------CCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEe
Confidence 47899999999999999999999986 8999999999999996544432 2211111111110 011112
Q ss_pred eCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
++ ++|++++++++. .+++++||+|| +++++|.++|+++|+++|+++|++||++||+|||+
T Consensus 202 ~~-----------------~nd~~~l~~~l~--~~~vAavi~EP-i~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~ 261 (453)
T PRK07046 202 VE-----------------FNDLAALEAALA--DGDVAAVLAEP-AMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETH 261 (453)
T ss_pred eC-----------------CCCHHHHHHHhC--CCCeEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccc
Confidence 22 248999999885 46899999999 99999999999999999999999999999999999
Q ss_pred cCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC---CcccccccCCCCCCHHHHHHHHHHH
Q psy14484 246 VGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN---NINIFLHSHSYSGNPLACCAALATL 322 (430)
Q Consensus 246 ~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~---~~~~~~~~~t~~~~~~~~~aa~~~l 322 (430)
+ | |.|.....+.+++.||++|+||+++|| +|+|++++++++++.+.... ....+.+++||++||++++++.++|
T Consensus 262 t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG-~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L 338 (453)
T PRK07046 262 T-I-SSGPGGYTRAHGLEPDFLVVGKPIAGG-VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATL 338 (453)
T ss_pred c-C-ccCCcchhHHhCCCccceeehhhhcCC-CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHH
Confidence 8 4 344434456679999999999999999 79999999999998875311 1223468899999999999999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---------chhHHHHHHHHHHHCCc
Q psy14484 323 EIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---------IETFSKKFFVAALKNEL 392 (430)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~a~~~~~~l~~~Gv 392 (430)
+.++++++.+++++++++|+++|+++ .+++....+++.|.++.+.+. ++... .......++..|+++||
T Consensus 339 ~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~v~g~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv 417 (453)
T PRK07046 339 AEVMTEAAYAHMLALAARLAAGLRAVIARHGLPWHVTRVGARVEFQFA-PTPPRNGAEAAAALDPELEAALHLYLLNRGV 417 (453)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCcEEEEEEe-CCCCCCHHHHhcccCHHHHHHHHHHHHHCCC
Confidence 99988899999999999999999987 567766789999999988875 32210 11234568888999999
Q ss_pred EEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 393 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 393 ~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++.+.++.++++|+ +|++||+++++++++++++++
T Consensus 418 ~~~~~~~~~~~~p~--~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 418 LITPFHNMMLVCPA--TTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred EEecccCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence 99887777888875 999999999999999998875
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-57 Score=478.55 Aligned_cols=395 Identities=21% Similarity=0.337 Sum_probs=324.7
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|. |+||.||++||||.+++ ..+||+||+|.+|+++++.++.+.. .+.++...+++++|++.+|
T Consensus 566 ~~p~~i~~g~G~---~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~~~p 638 (972)
T PRK06149 566 ADPPQIERGWRH---HLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAALAP 638 (972)
T ss_pred cCCCeEEEeeee---EEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHHhCC
Confidence 356788888776 89999999999999885 5799999999999999998865432 3567888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh-hccCCCeeEeCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY-TSLLNKTYIITTPD 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 170 (430)
.+.++++|++||+|||+.|+|+++.++ ++.+||+++.+|||++.++.+++.....+... ......+..++.|+
T Consensus 639 ~~~~~v~f~~SGsEA~e~AlklAr~~t------gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~ 712 (972)
T PRK06149 639 DGLDTVFLVNSGSEANDLAIRLAWAAS------GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPN 712 (972)
T ss_pred CCcCEEEEeCCchHHHHHHHHHHHHhc------CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCc
Confidence 667899999999999999999999986 88899999999999998887765432111111 12223445566666
Q ss_pred CCCCCCCCC--hhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNS--ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~--~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++.++... ...+. ++++...+.+.+.++++++||+|| +++++|.++|+++|+++|+++|++||+++|+||||+||
T Consensus 713 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~iAavI~Ep-v~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGf 790 (972)
T PRK06149 713 TYRGRFRGADSAADYV-RDVVAQLEELDASGRGLAGFICEP-VYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGY 790 (972)
T ss_pred ccCCcCCCcccHHHHH-HHHHHHHHHHhhcCCceEEEEEcc-cccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcC
Confidence 665544211 11111 232222222223357899999999 99999999999999999999999999999999999999
Q ss_pred CCccc-ccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 249 GRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 249 g~~g~-~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
||+|. +|+++++++.||++|+||+++|| +|+|++++++++++.+... ..+.+|+++||++|+++.++|+++++
T Consensus 791 GRtG~~~~a~e~~gv~PDivt~gK~lg~G-~Pl~av~~~~~i~~~~~~~-----~~~~sT~~gnP~~~aaala~L~~i~~ 864 (972)
T PRK06149 791 GRLGHYFWGFEQQGVVPDIITMAKGMGNG-HPLGAVITRREIAEALEAE-----GYFFSSTGGSPVSCRIGMAVLDVLRE 864 (972)
T ss_pred CccCccchhhhhcCCCCCEEEecccccCC-eeeEEEEEcHHHHhhhccC-----CcccCCCCCCHHHHHHHHHHHHHHHh
Confidence 99997 67899999999999999999999 7999999999999887641 12457889999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeecC---CE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NT 400 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~~---~~ 400 (430)
+++.+++++++++|+++|+++ .+++.+..++|.|+|+++++. .+.. .....+..+++.|+++||++.+.+ ++
T Consensus 865 e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gvel~-~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g~~~~v 943 (972)
T PRK06149 865 EKLQENARRVGDHLKARLEALADRHPLIGAVHGMGLYLGVELV-RDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNI 943 (972)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEEEe-cCcccCCCChHHHHHHHHHHHhCCeEEeecCCCCCE
Confidence 999999999999999999999 678888999999999999996 4322 122335789999999999999875 78
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||.|++++|++++++++++|++++.+.
T Consensus 944 l~~~Ppl~it~~~id~~~~~l~~~l~~~ 971 (972)
T PRK06149 944 LKIKPPLCLDRESADFFVDMLDRVLTEG 971 (972)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999864
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-59 Score=438.28 Aligned_cols=336 Identities=36% Similarity=0.614 Sum_probs=291.8
Q ss_pred eEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC
Q psy14484 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG 95 (430)
Q Consensus 16 ~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 95 (430)
++.+++|. |+||.||++|+||.+++++.+|||+||+|.+++++++.+..+.......++...+++++|.+.+|...+
T Consensus 1 ~i~~a~G~---~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~ 77 (339)
T PF00202_consen 1 FIERAEGA---YLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLD 77 (339)
T ss_dssp EEEEEEBT---EEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEE
T ss_pred CeEEeecC---EEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccc
Confidence 46778777 899999999999999999999999999999999999998876665678889999999999999976788
Q ss_pred eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCC
Q psy14484 96 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 175 (430)
Q Consensus 96 ~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
+++|++||+||++.|+|+++.++..+..+++.+|+.+.++|||++.+++++++.+.++..+.+...+..++|+|+...
T Consensus 78 ~v~f~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~-- 155 (339)
T PF00202_consen 78 RVFFANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAA-- 155 (339)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHH--
T ss_pred eeeeccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccch--
Confidence 999999999999999999995554445568999999999999999999999988888988888888888888875322
Q ss_pred CCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc
Q psy14484 176 KGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254 (430)
Q Consensus 176 ~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~ 254 (430)
++.....++.+++.+.+. ++++++||+|| +++++|.+.++++|+++|+++|++||+++|+|||++||||+|++
T Consensus 156 -----~~~~~~~~~~~~~~~~~~~~~~iaavivEP-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~ 229 (339)
T PF00202_consen 156 -----DEEEQACLNALEELIAALNADEIAAVIVEP-IQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKF 229 (339)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHGGGEEEEEEES-SBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSS
T ss_pred -----hhhHHHHHHHHHHHHHhhcCCcEEEEEEec-cccccCccccccchhhehcccccccccceecccccccccccCCc
Confidence 111222334444444332 57899999999 99999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH
Q psy14484 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI 334 (430)
Q Consensus 255 ~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~ 334 (430)
|+++.+++.||++|+||+++|| +|+|++++++++++.+.. ..+++||+++|++|+++.++|+.++++++.+++
T Consensus 230 ~a~~~~gv~PDiv~~gK~l~gG-~p~sav~~~~~i~~~~~~------~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~ 302 (339)
T PF00202_consen 230 FASEHYGVDPDIVTFGKGLGGG-LPISAVLGSEEIMEAFQP------GSHGSTFGGNPLSCAAALATLEILEEEDLLERV 302 (339)
T ss_dssp SGHHHHTSSSSEEEEEGGGGTT-SSEEEEEEEHHHHTTSCT------TSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cceecccccCcccccccchhhh-hhcccccccchhhccccc------cccccccccchHhhhhhhhHHHhhccHHHHHHH
Confidence 9999999999999999999999 899999999999988765 238999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEe
Q psy14484 335 SQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVI 369 (430)
Q Consensus 335 ~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~ 369 (430)
++.+++|+++|+++ ..++.+..+++.|+|+++++.
T Consensus 303 ~~~g~~l~~~L~~l~~~~~~i~~vrg~Gl~~~ie~~ 338 (339)
T PF00202_consen 303 RELGERLREGLRELAARYPLIGEVRGIGLMIGIELV 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeeCeEEEEEEE
Confidence 99999999999999 566889999999999999985
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=429.28 Aligned_cols=381 Identities=25% Similarity=0.436 Sum_probs=324.0
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |+||.||++||||.+|+|+.+|||+||+|.+++.++++++..... .+.++...+++++|++..
T Consensus 20 ~~~~~~~~~~~G~---~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~ 95 (403)
T PRK05093 20 APAEFIPVRGEGS---RVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDAT 95 (403)
T ss_pred CCCCeeEEEeecC---EEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhhC
Confidence 4578899999888 799999999999999999999999999999999999987543332 345677889999999987
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
..++++|++||+|||+.|+++++.++..++.+++.+||.++.+|||++..+.++++.+.+...+.+......+++++
T Consensus 96 --~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 172 (403)
T PRK05093 96 --FAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN- 172 (403)
T ss_pred --CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-
Confidence 45799999999999999999999886544444788999999999999988888777655554454444444555443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
|++.+++.+. +++++|++|| +++++|...|+++|+++|+++|++||+++|+||+|+|+++
T Consensus 173 ----------------d~~~l~~~l~---~~~aaiiiep-~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 173 ----------------DLAAVKAVID---DHTCAVVVEP-IQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred ----------------CHHHHHHHhc---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 8899998885 5799999999 9999998889999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++....++.||+.+|||++++| +|+|++++++++++.+.. ..+..|++++++.++++.++|+.+.++++
T Consensus 233 ~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~vv~~~~i~~~l~~------~~~~~t~~~~~~~~~aa~a~L~~~~~~~~ 305 (403)
T PRK05093 233 TGDLFAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKV------GTHGSTYGGNPLACAVAEAVFDIINTPEV 305 (403)
T ss_pred CccchhhhhcCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhccH
Confidence 99876667778899999999999988 799999999999888764 34667899999999999999998877889
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
.++++++++++.+.|+++ ...+.+..+++.|.++++.+. .+.. ..+.++++.|+++||.+.+.+ +.+|++|++.
T Consensus 306 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~-~~~~---~~~~~~~~~l~~~Gv~v~~~g~~~lRl~~~~~ 381 (403)
T PRK05093 306 LEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELK-PQYK---GRARDFLNAAAEEGVMVLVAGPDVLRFAPSLV 381 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEec-Ccch---hHHHHHHHHHHHCCeEEecCCCCEEEEeCCCC
Confidence 999999999999999987 445556678888999999886 4211 124679999999999999866 7999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++++|++++++|++++.++.
T Consensus 382 ~~~~~i~~~~~~l~~~l~~~~ 402 (403)
T PRK05093 382 IEEADIDEGLARFEKAVAKVV 402 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-55 Score=422.89 Aligned_cols=371 Identities=27% Similarity=0.471 Sum_probs=319.7
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
...|.++.+++|+ ++||.||++||||.+++++++|||+||+|.+++.+++++..+.. ..+.++...+++++|++.+
T Consensus 23 ~~~~~~~~~~~G~---~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~ 98 (398)
T PRK03244 23 GTPPLALVRGEGA---VVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVELL 98 (398)
T ss_pred cCCCceEEEeeec---EEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHHhC
Confidence 3467889998887 89999999999999999999999999999999999998865432 2466777889999999998
Q ss_pred CCC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 91 QYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 91 ~~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
+.. +++++|++||+||++.|+++++.. ++++||.++++|||++..+..+++...+...+.+...+...++++
T Consensus 99 ~~~~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (398)
T PRK03244 99 GAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYG 171 (398)
T ss_pred CCCCCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCC
Confidence 632 479999999999999999998874 678899999999999988887776554444444444444555443
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
|++++++.+. +++++|++|| +++++|.+.|+++|+++|.++|++||+++|+||+|+|||
T Consensus 172 -----------------d~~~l~~~~~---~~~~aviiep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 230 (398)
T PRK03244 172 -----------------DVDALAAAVD---DDTAAVFLEP-IQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIG 230 (398)
T ss_pred -----------------CHHHHHHhhc---CCeEEEEEec-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCc
Confidence 7888988884 5799999999 999999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+++++..++.||+++|||++++| +|+|++++++++++.+.. ..+.+||++++++++++.++|+.+++++
T Consensus 231 r~g~~~~~~~~~~~pDi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~ 303 (398)
T PRK03244 231 RTGAWFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLLTP------GLHGSTFGGNPVACAAALAVLDTIASEG 303 (398)
T ss_pred ccchHHhhhhhCCCCCEEEEchhhhCC-cccEEEEEcHHHHhhccC------CCCcCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999877777789999999999999988 799999999998887754 3477899999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
+.+++++++++|++.|+++ .++.+..+++.|+++++++. .+ .+..+++.|+++|+++.+.+ +++||+|++.
T Consensus 304 ~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~-~~------~~~~~~~~l~~~Gv~~~~~~~~~iR~~p~~~ 375 (398)
T PRK03244 304 LLENAERLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLT-AP------VAKAVEAAAREAGFLVNAVAPDVIRLAPPLI 375 (398)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEe-cc------HHHHHHHHHHHCCeEEeecCCCEEEEECCCc
Confidence 9999999999999999887 35656678889999999987 42 14679999999999998864 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++||++++++|++++.++
T Consensus 376 ~t~~~i~~~~~~l~~~l~~~ 395 (398)
T PRK03244 376 ITDAQVDAFVAALPAILDAA 395 (398)
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=417.11 Aligned_cols=381 Identities=28% Similarity=0.452 Sum_probs=321.2
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |++|.||++||||.+++++.++||+||+|.+|++++++++.+... ...++...++++.|++.+
T Consensus 17 ~~~~~~~~~~~g~---~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~ 92 (401)
T TIGR01885 17 HPLPVVFSKAEGV---HVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKLF 92 (401)
T ss_pred CCCCceEEeeecC---EEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhc
Confidence 4567888888887 799999999999999999999999999999999999988664433 346788899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhc-CC-CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNK-GF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~-g~-~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
+ .++++|++||++||+.|+++++.++..+ |. +++++|+.++.+|||++.+++++++.+.+...+.+.......+++
T Consensus 93 ~--~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (401)
T TIGR01885 93 G--YDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY 170 (401)
T ss_pred C--CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC
Confidence 4 5799999999999999999999875432 21 257899999999999999988887765544444443333444444
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|++++++.++++++|++|| +++++|.+.|+++|+++|.++|++||+++|+||+|+|+
T Consensus 171 ~-----------------d~~~le~~l~~~~~~~~avi~E~-v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~ 232 (401)
T TIGR01885 171 N-----------------NLEALEEALEDHGPNVCAFIVEP-IQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGL 232 (401)
T ss_pred C-----------------CHHHHHHHHHhcCCCEEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 3 78999999976667899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|++|.+++.+..++.||++++||++++|++|+|++++++++++.+.. ..+..|++++|++++++.++|+.++++
T Consensus 233 g~~G~~~~~~~~~~~~di~~~gK~l~~g~~~ig~v~~~~~i~~~~~~------~~~~~t~~~~p~~~~aa~a~L~~i~~~ 306 (401)
T TIGR01885 233 GRTGKLLCVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKP------GEHGSTYGGNPLACAVAVAALEVLEEE 306 (401)
T ss_pred CccchhhHHhhcCCCCCEEEeeccccCCCCCcEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99998777777788999999999999887899999999999887754 235678999999999999999998877
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 407 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~ 407 (430)
++.++.++++++++++|+++ ..+.+..+++.|.++.+.+. .+.. ...+.++++.|.++||++.+.+ +.+||+|++
T Consensus 307 ~l~~~~~~~~~~~~~~L~~l-~~~~~~~~~g~g~~~~i~~~-~~~~--~~~~~~l~~~l~~~Gv~v~~~~~~~lRi~p~l 382 (401)
T TIGR01885 307 KLAENAEKLGEIFRDQLKKL-PKPIITEVRGRGLLNAIVID-ESKT--GRTAWDLCLKLKEKGLLAKPTHGNIIRLAPPL 382 (401)
T ss_pred cHHHHHHHHHHHHHHHHHhc-cCCceeEEeecCeeEEEEec-cCcc--hhHHHHHHHHHHhCCEEEEecCCCEEEEeCCc
Confidence 88899999999999999988 33555677899999998886 4321 1124789999999999998875 789999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l 425 (430)
.+++++|++++++|++++
T Consensus 383 ~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 383 VITEEQLDEGLEIIKKVI 400 (401)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999998876
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=415.04 Aligned_cols=367 Identities=26% Similarity=0.428 Sum_probs=315.1
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.+.++.+++|+ |+||.||++||||.+|+++.+|||+||+|.+++.+++++..+.. ..+.++...++++.+.+..
T Consensus 9 ~~~~~~~~~~~G~---~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~ 84 (377)
T PRK02936 9 GRFPIDIVKGKGT---KVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAENS 84 (377)
T ss_pred cCCCceEEEeecC---EEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhcC
Confidence 4567889999888 79999999999999999999999999999999999998754332 2345778889999998876
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+ .++++|++||++|++.|+++++.++ ++++|++++++|||++...+.+++.+.++..+.+...+..+++++
T Consensus 85 ~--~~~~~~~~sG~~a~~~A~~~a~~~~------g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (377)
T PRK02936 85 A--GDLVFFCNSGAEANEAALKLARKHT------GKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN- 155 (377)
T ss_pred C--CCEEEEeCCcHHHHHHHHHHHHHhc------CCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-
Confidence 4 4689999999999999999988764 788999999999999988888877655555555555555555443
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
|++++++.+. +++++|++|| +++++|..+++++++++|.++|++||+++|+||+|+||++
T Consensus 156 ----------------d~~~l~~~~~---~~~~~ii~e~-i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~ 215 (377)
T PRK02936 156 ----------------DIKALKEVMN---EEVAAVMLEV-VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGR 215 (377)
T ss_pred ----------------CHHHHHHhcc---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 7889998885 5799999999 9999998889999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++++..++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.+..+++
T Consensus 216 ~g~~~~~~~~~~~~di~t~sK~l~~G-~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~a~l~~~~~~~~ 288 (377)
T PRK02936 216 TGTLFAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGP------GSHGSTFGGNPLAMAAAKEVLQVIKQPSF 288 (377)
T ss_pred CchhhHHHhhCCCCcEEEEcccccCC-CccEEEEEcHHHHhhccC------CCCCCCCCCCHHHHHHHHHHHHHHHhccH
Confidence 99877767778899999999999988 799999999999888764 23667889999999999999998877788
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
.++++++.+++++.|+++ .+++.+..+++.|.++++++. ++ +..+.+.|.++||++.+.+ +.+||+|++.
T Consensus 289 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~-~~-------~~~~~~~l~~~gv~v~~~g~~~lRi~p~~~ 360 (377)
T PRK02936 289 LEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECT-EE-------VAPVIEQLREEGLLVLSAGPNVIRLLPPLV 360 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEec-ch-------HHHHHHHHHHCCeEEecCCCCEEEEECCcc
Confidence 999999999999999885 566776677888999988887 42 3678889999999999876 7999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy14484 409 LNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l 425 (430)
++++++++++++|++++
T Consensus 361 ~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 361 VTKEELDQAVYLLKKVL 377 (377)
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999998764
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=416.91 Aligned_cols=391 Identities=29% Similarity=0.441 Sum_probs=327.0
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|. |+||.||++||||.+++++.++||+||+|.+++.++++++.+.......++...+++++|.+..|.
T Consensus 23 ~p~~~~~~~G~---~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~ 99 (425)
T PRK08088 23 HPIFADRAENC---RVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPG 99 (425)
T ss_pred CCceEEeeeeC---EEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCC
Confidence 47889999887 799999999999999999999999999999999999998654433334467778999999998764
Q ss_pred CC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCCC
Q psy14484 93 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 93 ~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (430)
+. ++++|++||+||++.|+++++.++ ++.+||++.++|||.+.++.++++.. .++..+.+....+..+++|.
T Consensus 100 ~~~~~~~f~~sGsea~e~Alklar~~~------~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 173 (425)
T PRK08088 100 DFAKKTLLVTTGSEAVENAVKIARAAT------KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173 (425)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHHh------CCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCc
Confidence 44 599999999999999999999886 77889999999999998888877642 24445544445555555554
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHh--CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~--~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++. .+ ...+++.+++.++. .++++++|++|| +++++|.+.++++++++|.++|++||+++|.||+|+|+
T Consensus 174 ~~~~---~~----~~~~~~~l~~~l~~~~~~~~~aavi~Ep-i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~ 245 (425)
T PRK08088 174 PLHG---VS----EDDAIASIERIFKNDAAPEDIAAIIIEP-VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGA 245 (425)
T ss_pred cccC---cc----HHHHHHHHHHHHHhccCCCceEEEEECc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 3321 11 11247788888862 357899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|.+++++..++.||+.+|||++++| +|+|++++++++++.+.. ..+.+|++++++.++++.++|+.++.+
T Consensus 246 g~~g~~~~~~~~~~~pdi~s~sK~l~~G-~rig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~~a~~~~l~~~~~~ 318 (425)
T PRK08088 246 GRTGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGVTGRAEVMDAIAP------GGLGGTYAGNPIACAAALAVLKVFEQE 318 (425)
T ss_pred CcCcchhHHhhcCCCCCEEEEeccccCC-CcceeeEecHHHHhhcCC------CCCCCCCCcCHHHHHHHHHHHHHHHhc
Confidence 9998877777788899999999999999 799999999999988765 347789999999999999999988888
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeec---CCEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPI---GNTV 401 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~---~~~l 401 (430)
++.+++++..+++++.|.++ ..+|.+..+++.|+++++.+. .+.. .....+..+++.|.++||++.++ ++.+
T Consensus 319 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~G~~~~l~l~-~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~~~i 397 (425)
T PRK08088 319 NLLQKANALGEKLKDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVL 397 (425)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeccceEEEEEEe-cCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCCCCEE
Confidence 99999999999999999988 567777788899999999985 4322 12223578999999999988765 3889
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++|++.+++++|++++++|++++.++
T Consensus 398 Rl~~~~~~t~~ei~~~i~~l~~~l~~~ 424 (425)
T PRK08088 398 RILVPLTIEDAQIRQGLEIIAQCFDEA 424 (425)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-54 Score=419.18 Aligned_cols=379 Identities=22% Similarity=0.330 Sum_probs=310.5
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|. |+||.||++||||.+|+|+.++||+||+|.+|+++++++... ....++...+++++|++.+
T Consensus 28 ~~~p~~~~~~~G~---~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~lae~l~~~~ 101 (423)
T TIGR00713 28 GPTPFFVARGKGA---YLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTS---YGAPTEAEILLAKEIISRV 101 (423)
T ss_pred CCCCeeEEeccCC---EEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHHhC
Confidence 3568899999888 799999999999999999999999999999999999987542 2456778899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC--ccchhhhhccC-----CCe
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI--QSFKEIYTSLL-----NKT 163 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~--~~~~~~~~~~~-----~~~ 163 (430)
+ ..++|+|++||+||++.|+++++.++ ++++||+++++|||++......+.. ..+..++.+.. ...
T Consensus 102 ~-~~~~v~~~~sGseA~e~Alk~ar~~~------gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (423)
T TIGR00713 102 P-SVEMVRFVNSGTEATMSAVRLARGYT------GRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLT 174 (423)
T ss_pred C-cccEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccce
Confidence 7 45799999999999999999999886 7899999999999987665554332 11111111110 011
Q ss_pred eEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy14484 164 YIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DE 243 (430)
..+++ +|++++++++.++++++++|++|| +++++|.+.++++|+++|+++|++||+++|+||
T Consensus 175 ~~~~~-----------------~d~~~l~~~i~~~~~~~aavi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DE 236 (423)
T TIGR00713 175 LVLPY-----------------NDLEALEEVFEEYGEEIAGVIVEP-VAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDE 236 (423)
T ss_pred EEeCC-----------------CCHHHHHHHHHHcCCcEEEEEEeC-CCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEc
Confidence 12221 378999999986657899999999 999999888889999999999999999999999
Q ss_pred cccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 244 IAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 244 v~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
+|+|| ++|..++.+.+++.||+++|||++++| +|+|++++++++++.+.. .....+.+|+++++++++++.++|+
T Consensus 237 v~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G-~pig~v~~~~~i~~~~~~---~~~~~~~~T~~~~~~~~aaa~a~l~ 311 (423)
T TIGR00713 237 VMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAP---EGPVYQAGTLSGNPLAMAAGLATLK 311 (423)
T ss_pred ccccc-ccCcchhHHHhCCCcchhhhhhhhcCC-CceeeeeEHHHHHHhhCc---CCCeeeccCCCCCHHHHHHHHHHHH
Confidence 99999 888777777789999999999999988 799999999999988764 1234577899999999999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEE
Q psy14484 324 IFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLL 394 (430)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~ 394 (430)
.++++++.++++++.+++++.|+++ ..++....+++.|.++.+++. .+.. .....+..+++.|+++||++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~g~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 390 (423)
T TIGR00713 312 LLDEEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNRVGSMFSLFFT-EEEVTNYADAKKSDTELFAKFFHEMLDKGVFL 390 (423)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccEEEEEEe-cCCCCChhhhhcccHHHHHHHHHHHHHCCeEE
Confidence 9887789999999999999999876 566666677899999998886 4321 01112357888999999998
Q ss_pred eecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 395 RPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 395 ~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+ +.+|++|+ +++++|++++++|++++.++
T Consensus 391 ~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~l~~~ 423 (423)
T TIGR00713 391 PPSQFEACFLSAA--HTEEDIENTIEAAEEVFAEL 423 (423)
T ss_pred ecCCccceeeECC--CCHHHHHHHHHHHHHHHhhC
Confidence 7654 57888776 79999999999999998764
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=415.55 Aligned_cols=385 Identities=22% Similarity=0.316 Sum_probs=314.8
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
+......|.++.+++|. |+||.||++||||.+++++.+|||+||+|.+++.+++++.. .....++...+++++|
T Consensus 26 ~~~~~~~~~~~~~a~G~---~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~---~~~~~~~~~~~la~~L 99 (426)
T PRK00062 26 FKSVGGTPRFIERAKGA---YLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL---SFGAPTELEVELAELV 99 (426)
T ss_pred cCCCCCCCeEEEeCcCC---EEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC---cCCCCCHHHHHHHHHH
Confidence 33333457888898887 89999999999999999999999999999999999998743 2345678888999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc--hhhhhccCCC--
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF--KEIYTSLLNK-- 162 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~--~~~~~~~~~~-- 162 (430)
.+.++ +.++++|++||+||++.|+++++.++ ++++||.++++|||++.+....++.... ...+.+....
T Consensus 100 ~~~~~-~~~~v~~~~sGseA~e~Aik~a~~~~------g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (426)
T PRK00062 100 IELVP-SIEMVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDF 172 (426)
T ss_pred HHhCC-CCCEEEEecCHHHHHHHHHHHHHHHh------CCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCccc
Confidence 99886 57899999999999999999999875 7889999999999998666655432111 1111100000
Q ss_pred -eeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy14484 163 -TYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241 (430)
Q Consensus 163 -~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~ 241 (430)
.....+|+ +|++++++.+.++++++++|++|| +++++|.+.|+++|+++|+++|++||+++|+
T Consensus 173 ~~~~~~~~~---------------~d~~~l~~~i~~~~~~~aaiivEp-v~~~~G~~~~~~~~l~~l~~l~~~~~~llI~ 236 (426)
T PRK00062 173 AKHTLTAPY---------------NDLEAVEELFEEYGDEIAAVIVEP-VAGNMGVVPPKPGFLEGLRELCDEHGALLIF 236 (426)
T ss_pred ccceEEcCC---------------CCHHHHHHHHHhCCCcEEEEEEeC-CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 00111221 378899998876667899999999 9999999999999999999999999999999
Q ss_pred eccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 242 DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
||+|+|+ |+|.+++.+.+++.||++++||++++| +|+|++++++++++.+.. .....+.+|++++|++++++.++
T Consensus 237 DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G-~p~ga~~~~~~i~~~~~~---~~~~~~~~T~~~~p~~~aaa~a~ 311 (426)
T PRK00062 237 DEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAP---LGPVYQAGTLSGNPLAMAAGLAT 311 (426)
T ss_pred eechhcc-ccCCccHHHHhCCCcchHhhhhHhhCC-CcceeeeEHHHHHHhhcc---CCCceecccCcCCHHHHHHHHHH
Confidence 9999999 888777777889999999999999999 799999999999988853 12345778999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc--------chhHHHHHHHHHHHCCc
Q psy14484 322 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAALKNEL 392 (430)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~a~~~~~~l~~~Gv 392 (430)
|+.++++++.++++++.++++++|+++ .+++.+..+++.|.|+.+++. ++... ....+..+++.|+++||
T Consensus 312 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg~G~~~~i~l~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv 390 (426)
T PRK00062 312 LKLLKEPGFYEELEALTKRLAEGLKEAAKKAGIPLTVNRVGSMFGLFFT-DEPVTNYADAKKSDTERFARFFHAMLDEGV 390 (426)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEEEEEe-cCCCcchhhhccccHHHHHHHHHHHHHCCe
Confidence 999987789999999999999999887 566777778999999999987 53211 11234689999999999
Q ss_pred EEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 393 LLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 393 ~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.+.+ +.+++ ++++|++||++++++|++++.++
T Consensus 391 ~v~~~~~~~~~~--~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 391 YLAPSQFEAGFV--SAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred EeecCCcCceee--eccCCHHHHHHHHHHHHHHHHhh
Confidence 998865 56666 58999999999999999999765
|
|
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-55 Score=377.18 Aligned_cols=397 Identities=22% Similarity=0.339 Sum_probs=333.7
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|+.+.++++. |++|++|++|||++++ +...||+||+|++|...++..... +.++.++...+.+++|...
T Consensus 26 y~sDP~kivRaq~Q---YmfDE~g~~yLDCInN--VaHvghchp~VV~A~~kQmat~~t--N~RFlhd~lv~cA~~l~st 98 (452)
T KOG1403|consen 26 YRSDPLKIVRAQGQ---YMFDEEGTRYLDCINN--VAHVGHCHPEVVRAGAKQMATIST--NNRFLHDELVQCARTLTST 98 (452)
T ss_pred ecCCchhhehhccc---eeeccCcccHHHHhhh--hhhcccCCHHHHHHHHHHHhHhcc--cchhhHHHHHHHHHHHhhc
Confidence 46788888888776 9999999999999999 788999999999999999887553 3467788888999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCe-eEeCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKT-YIITT 168 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (430)
+| .++.++|+|||+|||++|++++|.++ ++..+|+.+..|||+....+.++...- ..+-..-.+++ +..|.
T Consensus 99 lP-eLsvc~F~NSGSEANDLALRLAR~ft------khqDvItldHAYHGHl~s~mE~SPYKF-~~g~~v~kpd~VHVAPc 170 (452)
T KOG1403|consen 99 LP-ELSVCFFVNSGSEANDLALRLARNFT------KHQDVITLDHAYHGHLQSVMEVSPYKF-NQGGGVAKPDYVHVAPC 170 (452)
T ss_pred CC-CceEEEEecCCchhhHHHHHHHHhhc------ccCceEEEechhccceeeeeeccceec-cCCCCcCCCceeEecCC
Confidence 98 69999999999999999999999987 888999999999999888777776432 22222223344 55678
Q ss_pred CCCCCCCCCCChhHHH---HHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy14484 169 PDSRNINKGNSANEIA---RCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~---~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~D 242 (430)
|+.+++.+.....+.+ ....+.+++++.+. ...++++|.|. .++-||.+.||++|++.+.+..+.+|.++|.|
T Consensus 171 PDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEs-lQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaD 249 (452)
T KOG1403|consen 171 PDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAES-LQSCGGQIIPPAGYFQAVADAVRSAGGVCIAD 249 (452)
T ss_pred ccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHH-HHhcCCcccCchhHHHHHHHHHhcCCCeEEee
Confidence 9888886633222211 12445666666543 35689999999 99999999999999999999999999999999
Q ss_pred ccccCCCCccc-ccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 243 EIAVGCGRTGK-FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 243 Ev~~g~g~~g~-~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
|||.||||.|+ .|+++.+++.|||++++|.||+| -|+++++.++++.+.+.. ....+..||++||.+|++++++
T Consensus 250 EVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNG-hPVa~VattkeIA~Af~a----tgv~YFNTyGGnPVsCAv~laV 324 (452)
T KOG1403|consen 250 EVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNG-HPVAAVATTKEIAQAFHA----TGVEYFNTYGGNPVSCAVGLAV 324 (452)
T ss_pred hhhhcccccchhhhhhhhhccccchheecccCCCC-CeeeEEeccHHHHHHhcc----ccceehhccCCCchhHHHHHHH
Confidence 99999999997 68999999999999999999999 599999999999988864 2356789999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc---hhHHHHHHHHHHHC-CcEEee
Q psy14484 322 LEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI---ETFSKKFFVAALKN-ELLLRP 396 (430)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~a~~~~~~l~~~-Gv~~~~ 396 (430)
|+.++.+++.++.++.+++|...|+++ ..++.+.+++|.|+|+++++. .|..+. ...|..+..+|++. +|++..
T Consensus 325 m~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLV-kD~~tRtP~tk~A~~~v~rlke~y~VLlsa 403 (452)
T KOG1403|consen 325 MRVCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDVRGVGLFIGIDLV-KDRKTRTPDTKEAHWVVNRLKELYRVLLSA 403 (452)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccceeccccceEEEeeeee-cccccCCCcHHHHHHHHHHHHHhhhEEEec
Confidence 999999999999999999999999998 688899999999999999998 654322 22366777888877 688875
Q ss_pred c---CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 I---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 ~---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
. .+.+.|.|+.+.+++++++++..|.++|.-|
T Consensus 404 DGPh~NilKiKPPmCFneena~e~v~~ld~iLT~m 438 (452)
T KOG1403|consen 404 DGPHRNILKIKPPMCFNEENADEFVLGLDEILTVM 438 (452)
T ss_pred CCCCCceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence 4 3789999999999999999999999998743
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=410.60 Aligned_cols=377 Identities=25% Similarity=0.416 Sum_probs=318.2
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |+||.||++||||.+++++.++||+||+|.+++.++++++.+... ...++...++++.|++..
T Consensus 21 ~~~~~~~~~~~G~---~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~ 96 (401)
T PRK00854 21 KPLDVVLTRGEGV---WVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAALT 96 (401)
T ss_pred CCCCceEEeeeeC---EEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhhC
Confidence 4567888888877 799999999999999999999999999999999999998765432 455788899999999988
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhh-cCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~-~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
+ .+++++++||++|++.|+++++.+++. +|.+ ++++||+++.+|||++.....++..+..+..+.+...++.++++
T Consensus 97 ~--~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (401)
T PRK00854 97 G--SHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF 174 (401)
T ss_pred C--CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC
Confidence 5 469999999999999999999987432 2332 46789999999999988877777655555555555555556655
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|++.+. +++++|++|| +++++|.+.|+++|+++|+++|++||+++|+||+|+|+
T Consensus 175 ~-----------------d~~~le~~i~---~~~~aii~e~-~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~ 233 (401)
T PRK00854 175 G-----------------DAEALEAAIT---PNTVAFLVEP-IQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGL 233 (401)
T ss_pred C-----------------CHHHHHHHhC---CCeEEEEEcc-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCC
Confidence 4 7899999885 5799999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|++|..++.+..++.||++++||++++|++|+|++++++++++.+.. ..+..|+++++++++++.++|+.++++
T Consensus 234 g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~l~~~ 307 (401)
T PRK00854 234 GRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKP------GQHGSTFGGNPLACAVARAALKVLTEE 307 (401)
T ss_pred CCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccC------CCCCCCCCcCHHHHHHHHHHHHHHHHc
Confidence 99987666667788999999999999997899999999999887754 346778889999999999999988777
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPY 407 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~ 407 (430)
+..++++++++++.+.|+++. .+.+..+++.|.++.+.+. .+.. ....+++.|+++||.+.+. ++++||+|++
T Consensus 308 ~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~-~~~~----~~~~~~~~L~~~GV~v~~~~~~~lR~~p~~ 381 (401)
T PRK00854 308 GMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELE-PEAG----GARQYCEALKERGLLAKDTHDHTIRLAPPL 381 (401)
T ss_pred CHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEe-cCch----hHHHHHHHHHHCCeEEecCCCCEEEEeCCc
Confidence 789999999999999998872 2334567889999998886 4321 1367999999999999876 4799999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~ 426 (430)
.+++++|++++++|++++.
T Consensus 382 ~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 382 VITREQVDWALEQIAKVLA 400 (401)
T ss_pred ccCHHHHHHHHHHHHHHhh
Confidence 9999999999999998864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=405.83 Aligned_cols=383 Identities=28% Similarity=0.434 Sum_probs=317.7
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|+ |+||.||++||||.+++++.++||+||+|++++.++++++.+... .+.++...++++.+++.
T Consensus 10 ~~~~~~~~~~~~G~---~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 85 (400)
T PTZ00125 10 YHPLPVVLKRGKGV---FVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITDL 85 (400)
T ss_pred cCCCCccEEeeecC---EEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHhC
Confidence 45678899999888 799999999999999999999999999999999999988765433 23467778888888887
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhh-cCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~-~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
. +.++++|++||++|++.|+++++.++.. +|.+ ++++||+++.+|||.+...+..++...+...+.+...+...++
T Consensus 86 ~--~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (400)
T PTZ00125 86 F--GYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD 163 (400)
T ss_pred C--CCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC
Confidence 6 5679999999999999999999865322 2222 4678999999999999888887764433333333333333443
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
++ |++++++.++ .+++++|++|| +++++|.+.++++|+++|.++|++||+++|+||+|+|
T Consensus 164 ~~-----------------d~~~le~~l~--~~~~~~v~~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g 223 (400)
T PTZ00125 164 YN-----------------DVEALEKLLQ--DPNVAAFIVEP-IQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTG 223 (400)
T ss_pred CC-----------------CHHHHHHHhC--CCCeEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 33 8899999986 35799999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
+|++|..+..+..++.||++++||++++|++|+|++++++++++.+.. ..+..|++++++.++++.++|+.+++
T Consensus 224 ~g~~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~i~~ 297 (400)
T PTZ00125 224 LGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKP------GEHGSTYGGNPLACAVAVEALEVLKE 297 (400)
T ss_pred CCccchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccC------CCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 999998777777888999999999999986799999999999887754 23567889999999999999998877
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeC
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMP 405 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~ 405 (430)
+++.++++++.++++++|+++ ...+.+..+++.|.++++.+. .... ..+..+++.|+++||.+.|.+ +.+||+|
T Consensus 298 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~v~~~-~~~~---~~~~~~~~~l~~~Gv~v~~~~~~~lRi~~ 373 (400)
T PTZ00125 298 EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGKGLLNAIVFD-HSDG---VNAWDLCLKLKENGLLAKPTHDNIIRFAP 373 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccEEEEEEEc-cCcc---hHHHHHHHHHHHCCeEEeecCCCEEEEEC
Confidence 788899999999999999887 455666667889999998876 4211 124678999999999999865 7999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.++++++++++++|++++.++
T Consensus 374 ~~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 374 PLVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=404.12 Aligned_cols=377 Identities=32% Similarity=0.523 Sum_probs=319.0
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|+ ++||.||++||||.+++++++|||+||++.+++++++.+..+.. ..+.++...+++++|++.
T Consensus 18 ~~~~~~~~~~~~G~---~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~ 93 (396)
T PRK02627 18 YGRLPIAFVRGEGA---RLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVEL 93 (396)
T ss_pred ccCCCceEEeeeeC---EEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhh
Confidence 34568899999888 79999999999999999999999999999999999998764332 246688899999999998
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
. +.+++++++||+||++.|+++++.+....+. ++++|++++++|||++.....+++.+.++..+.++..+...++++
T Consensus 94 ~--~~~~v~~~~gg~eA~~~al~~a~~~~~~~~~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (396)
T PRK02627 94 S--GMDKVFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFN 170 (396)
T ss_pred c--CCCEEEECCCcHHHHHHHHHHHHHHhcccCC-CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCC
Confidence 6 5689999999999999999999876522111 237899999999999988888777655544444444444444433
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
|++++++++. +++++|++|| +++++|+.+++++++++|.++|++||+++|+||+|+||+
T Consensus 171 -----------------d~~~l~~~i~---~~~~~vii~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g 229 (396)
T PRK02627 171 -----------------DIEALKAAIT---DKTAAVMLEP-IQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMG 229 (396)
T ss_pred -----------------CHHHHHHhcC---CCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCC
Confidence 7899998884 5799999999 999999889999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
++|.+++++..++.||+++|||++++| +|+|++++++++++.+.. ..+..|+++++++++++.++|+.+++++
T Consensus 230 ~~g~~~~~~~~~~~pdi~t~sK~~~~G-~rig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 302 (396)
T PRK02627 230 RTGKLFAYQHYGIEPDIMTLAKGLGGG-VPIGAVLAKEKVADVFTP------GDHGSTFGGNPLACAAALAVIEIIEEEG 302 (396)
T ss_pred ccCceeeehhcCCCCCEEEEcchhhCC-cccEEEEEcHHHHhccCC------CCCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 998777777778899999999999988 799999999998887754 3467899999999999999999887778
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCC
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPY 407 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~ 407 (430)
+.++++++.++++++|+++ ..++.+..+++.|.++++++. .+ +.++++.|+++||++.+++ +.+||+|++
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~-~~-------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~ 374 (396)
T PRK02627 303 LLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELD-RP-------AAEIVKKALEKGLLINVTGDNVLRLLPPL 374 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEec-Cc-------HHHHHHHHHHCCeEEeecCCCEEEEECCc
Confidence 8999999999999999887 556666677888999888875 31 3679999999999999875 789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.++++++++++++|++++++++
T Consensus 375 ~~~~~~i~~~~~~l~~~l~~~~ 396 (396)
T PRK02627 375 IISKEEIDEAVDRLEEVLKELL 396 (396)
T ss_pred ccCHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999998764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=402.61 Aligned_cols=392 Identities=36% Similarity=0.579 Sum_probs=325.1
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ ++||.||++||||.+|+++.++||+||+|++++.+++.+........+.++...++++.|++.++
T Consensus 17 ~~~~~~~~~~g~---~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 93 (413)
T cd00610 17 PYPLVIVRAEGA---YLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTP 93 (413)
T ss_pred CCCceEEeeecC---EEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCC
Confidence 578899998887 79999999999999999999999999999999999997765443322357889999999999997
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++++|++||++|++.|+++++.++ ++++|++++++|||++...+..++.+.++..+.+...++..+++++.
T Consensus 94 ~~~~~v~~~~sgsea~~~al~~~~~~~------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (413)
T cd00610 94 EGLDKVFFVNSGTEAVEAALKLARAYT------GRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYR 167 (413)
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHHc------CCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcc
Confidence 678999999999999999999998764 78899999999999998888877665455444444445555555421
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
.+.. .....|++.|++.+++++++++++++|| +++++|...++++++++|.++|++||+++|+||+|+|+++.
T Consensus 168 ~~~~------~~~~~d~~~l~~~l~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~ 240 (413)
T cd00610 168 YRPP------AELADDLEALEEALEEHPEEVAAVIVEP-IQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRT 240 (413)
T ss_pred ccch------hhHHHHHHHHHHHHhcCCCCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 1110 1112388999999986556899999999 99999999999999999999999999999999999999998
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|..+.++.+++.||++++||++++| +|+|++++++++++.+. .....+.+|+++++++++++.++|+.++++++.
T Consensus 241 g~~~~~~~~~~~~d~~t~sK~l~~g-~~~g~~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~ 315 (413)
T cd00610 241 GKMFAFEHFGVEPDIVTLGKGLGGG-LPLGAVLGREEIMDAFP----AGPGLHGGTFGGNPLACAAALAVLEVLEEEGLL 315 (413)
T ss_pred cchhhHhhcCCCCCeEEEcccccCc-cccEEEEEcHHHHHhhc----cCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHH
Confidence 8777777788899999999999998 79999999999988761 123457789999999999999999988878899
Q ss_pred HHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 332 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
+++++++++++++|+++ ...+.+..+++.|.++++.+. +.... ....+..+++.|.++||.+.+. ++.+|++++
T Consensus 316 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~~~~lR~~~~ 394 (413)
T cd00610 316 ENAAELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELV-KDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPP 394 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEe-cCCCcCCcchHHHHHHHHHHHHCCeEEeecCCCEEEEECC
Confidence 99999999999999987 334555567788999999887 53110 0122467999999999999987 489999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l 425 (430)
+.+|+++|++++++|++++
T Consensus 395 ~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 395 LIITEEEIDEGLDALDEAL 413 (413)
T ss_pred CcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=392.27 Aligned_cols=365 Identities=27% Similarity=0.412 Sum_probs=302.9
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |+||.||++||||.+++++.+||| ||+|++|+.+++++..... ....++...++++.+...
T Consensus 9 ~~~~~~~~~~~G~---~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~- 82 (375)
T PRK04260 9 KRAAIEFVKAEGN---YLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGD- 82 (375)
T ss_pred CCCCceEEEeeeC---EEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcC-
Confidence 4467889999888 799999999999999999999999 9999999999998754322 234456666777666432
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
....++|++||+||++.|+++++.++ ++++||+++++|||++..+...++.+.++..+.+....+...++
T Consensus 83 --~~~~~~~~~SGseA~~~Al~~ar~~~------~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (375)
T PRK04260 83 --KDYLAFFCNSGAEANEAAIKIARKAT------GKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-- 152 (375)
T ss_pred --cCCEEEEcCccHHHHHHHHHHHHHhc------CCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC--
Confidence 22357999999999999999998764 77889999999999998888777655444444332222222222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
+|++.+++++. +++++|++|| +++++|++.++++|++++.++|+++|+++|+||+|+|+++
T Consensus 153 ---------------~dl~~l~~~l~---~~~a~vi~e~-v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~ 213 (375)
T PRK04260 153 ---------------NDLNSVKALVN---KNTAAVMLEL-VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGR 213 (375)
T ss_pred ---------------CCHHHHHHhcC---CCeEEEEECC-eECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 27889998874 5789999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.++.++..++.||+++|||++++| +|+|++++++++.+.+.. ..+.+|+++++++++++.++|+.++.+++
T Consensus 214 ~g~~~~~~~~~~~pdi~t~sK~l~~G-~~ig~~~~~~~~~~~~~~------~~~~~t~~~~~~~~~aa~a~l~~~~~~~~ 286 (375)
T PRK04260 214 TGKLYAFEHYGIEPDIFTLAKGLANG-VPVGAMLAKSSLGGAFGY------GSHGSTFGGNKLSMAAASATLDIMLTAGF 286 (375)
T ss_pred ccchhhhHhhCCCCCEEEecccccCC-cceEEEEEcHHHHhhcCC------CCCCCCCCcCHHHHHHHHHHHHHHHhhHH
Confidence 88766766778999999999999988 799999999999887754 24678999999999999999998887789
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
.+++++..+++++.+.++ ..++.+..+++.|+++++++. .+ +.++.+.|+++||++.+.+ +.+|++|++.
T Consensus 287 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~Gi~v~~~~~~~lR~~~~~~ 358 (375)
T PRK04260 287 LEQALENGNYLQEQLQKALQDKETVTTVRGLGYMIGIETT-AD-------LSQLVEAARDKGLIVLTAGTNVIRLLPPLT 358 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEEeccceEEEEEec-Cc-------HHHHHHHHHhCCCEEecCCCCEEEEcCCCc
Confidence 999999999999999876 556656677889999999886 32 3679999999999998765 7899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy14484 409 LNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l 425 (430)
++++++++++++|++++
T Consensus 359 ~t~~~i~~~l~~l~~~~ 375 (375)
T PRK04260 359 LTKEEIEQGIAILSEVF 375 (375)
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999998763
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-51 Score=395.36 Aligned_cols=370 Identities=17% Similarity=0.245 Sum_probs=289.5
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|+++.+++|+ |+||.||++||||.+++|+.++||+||+|.+|++++++++.. ....+....+++++|.+.+|
T Consensus 29 ~~p~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~~~~~~~~~~la~~l~~~~p 102 (431)
T PRK06209 29 LAPGFIQRGSGA---HVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN---FTRPSAIELDAAESFLELID 102 (431)
T ss_pred CCCeEEEeccCC---EEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHHHhCC
Confidence 567899999888 899999999999999999999999999999999999988642 23455566689999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE-cCCCCCcchhhhccCC-CccchhhhhccCCCeeEeCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL-QNSYHGETLGALAVTN-IQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~-~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 169 (430)
..++++|++||+||++.|+|+++.++ +|.+|+.+ ..+|||........+. ....... ... ....++
T Consensus 103 -~~~~v~f~~sGseA~e~AlklAr~~t------gr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~---~~~--~~~~~~ 170 (431)
T PRK06209 103 -GADMVKFCKNGSDATSAAVRLARAYT------GRDLVARCADHPFFSTDDWFIGTTPMSAGIPAS---VSA--LTVTFR 170 (431)
T ss_pred -ccceEEEecCHHHHHHHHHHHHHHHh------CCCeEEEeccCccccccccccccCCCCCCCChh---Hhc--cccccC
Confidence 46899999999999999999999986 78889888 5677763211110000 0000000 000 011122
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
.+|+++++++++++++++++|++|| ++++ .|+++|+++|+++|++||++||+|||++|++
T Consensus 171 ---------------~~d~~~l~~~l~~~~~~~aavi~Ep-v~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~ 230 (431)
T PRK06209 171 ---------------YNDIASLEALFEDHPGRIACVILEP-ATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFR 230 (431)
T ss_pred ---------------CCCHHHHHHHHHhCCCCEEEEEEcc-ccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCC
Confidence 2488999999987667899999999 8765 7889999999999999999999999999997
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHh--hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNS--IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
+.+ .+..+.+++.||++++||+++|| +|+|++++++++++. +......+.+.+++|+++||++++++.++|+++++
T Consensus 231 ~~~-~g~~~~~gv~PDi~t~gK~lggG-~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~ 308 (431)
T PRK06209 231 WHM-RGAQKLYGIVPDLSCFGKALGNG-FAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRD 308 (431)
T ss_pred cCc-chhhHHhCCCcceeeehhhhcCC-cccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhc
Confidence 642 22334579999999999999999 699999999999886 32211234567899999999999999999999988
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC---ccchhHHHHHHHHHHHCCcEEeecCCEEEE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP---EQIETFSKKFFVAALKNELLLRPIGNTVYL 403 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~ 403 (430)
+++.++++++++++++.|+++ .+++....+++.|.++.+.+. ... .........+.+.|+++|+++.+ +
T Consensus 309 ~~~~~~~~~~g~~l~~~L~~~~~~~~~~~~vr~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gi~~p~------l 381 (431)
T PRK06209 309 EDVIERLHEQGAKLAAGVNEAAAEHGLQDHVRVSGRPCCLTYS-TLDGNGQPSQAFRTLFLQETIRRGVLMPS------L 381 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecceEEEEEe-cCCcccCCcHHHHHHHHHHHHHCCccccc------c
Confidence 899999999999999999887 567766677888888877764 321 11222334788889999998732 3
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++..+|+++|++++++|++++.++
T Consensus 382 ~is~~ht~~dId~~l~~l~~~l~~~ 406 (431)
T PRK06209 382 VVSYAHGDADIERTIDAVHGALGVY 406 (431)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999875
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=366.12 Aligned_cols=371 Identities=34% Similarity=0.545 Sum_probs=303.1
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|. +++|.||++||||.+++|+++|||++|.|.+++.+++.+..... ..+.++...++++.+++.+
T Consensus 7 ~~~~~~~~~~~g~---~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~ 82 (379)
T TIGR00707 7 GRLPVKIVRGKGA---YVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVEHS 82 (379)
T ss_pred CCCCccEEEeecC---EEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhC
Confidence 3578899999887 79999999999999999999999999999999999998764332 2456788999999999999
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+.+++++++||++|++.++++++.++.+.| +++++|++++++|||+...+...+....+...+.++..+..+++++
T Consensus 83 --g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (379)
T TIGR00707 83 --GADRVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYN- 158 (379)
T ss_pred --CCCEEEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCC-
Confidence 456999999999999999998876542222 2368999999999999887777666544332333333333344332
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
|++++++.+. +++++|+++| +++++|..+++.+++++|.++|+++|+++|+||+|++|++
T Consensus 159 ----------------d~~~l~~~~~---~~~~~v~~~p-~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~ 218 (379)
T TIGR00707 159 ----------------DIESLKKAID---DETAAVIVEP-IQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGR 218 (379)
T ss_pred ----------------CHHHHHHHhh---hCeeEEEEEc-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 7889998886 4688999999 9999997778999999999999999999999999999988
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
.|..+.+...++.||+++|||++++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.++.+++
T Consensus 219 ~g~~~~~~~~~~~~d~~t~sK~~~~G-~riG~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aaL~~~~~~~~ 291 (379)
T TIGR00707 219 TGKFFAYEHYGIEPDIITLAKGLGGG-VPIGATLAKEEVAEAFTP------GDHGSTFGGNPLACAAALAVLEVIEKERL 291 (379)
T ss_pred cchhhhHHhcCCCCCEEEEcccccCC-cccEEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 87655555567889999999999988 799999999999888765 23556788899999999999998877778
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYI 408 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~ 408 (430)
.++++++.++++++|+++ ...+ ...+++.|.++++.+. ++ +.++++.|+++||.+.|.+ +++|+++++.
T Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~Gv~v~~~~~~~lRi~~~~~ 362 (379)
T TIGR00707 292 LENVKEKGDYFKERLEELGKNYP-NKEVRGKGLMLGIELE-AP-------CKDIVKKALEKGLLVNCAGPKVLRFLPPLI 362 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC-CCccccCceEEEEEec-Cc-------HHHHHHHHHHCCcEEeeCCCCEEEEECCCc
Confidence 899999999999999876 3332 2345567888888776 32 3678999999999999876 7999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy14484 409 LNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l 425 (430)
++++++++++++|++++
T Consensus 363 ~t~~~i~~~~~~l~~~~ 379 (379)
T TIGR00707 363 ITKEEIDEAVSALEEAI 379 (379)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998753
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=324.12 Aligned_cols=390 Identities=23% Similarity=0.312 Sum_probs=303.8
Q ss_pred EEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHH-HhhccccccC---CCCC-HHHHHHHHHHHhhcC
Q psy14484 17 IRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQ-LNKLEHVMLS---NLTH-KPVIKLSEKLSSLTQ 91 (430)
Q Consensus 17 ~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~-~~~~~~~~~~---~~~~-~~~~~l~~~l~~~~~ 91 (430)
+.--+-+.|+|++|.|||.+||..+.+.+.++||+||.+.+++++- .... ...++ .++. +..+.+.+.+.+..|
T Consensus 59 ~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~-lvnRPALg~fP~kd~~~~l~~~ll~~AP 137 (484)
T KOG1405|consen 59 FVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATM-LVNRPALGNFPPKDFAEKLRQSLLSIAP 137 (484)
T ss_pred ehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHH-HhccccccCCChhhHHHHHHHHHHhhCc
Confidence 3334455789999999999999999999999999999999888752 2211 11111 2222 333445455556667
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhc--CC----------------C--CCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNK--GF----------------L--NKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~--g~----------------~--~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
-+.+.|.+.-+|+.||+.|++.+.-|++++ |. | +.-.|+.|.++|||++.++.+.+....
T Consensus 138 KG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e~eScm~n~aPg~P~lsvlsF~gaFHGR~~g~lstT~SKp 217 (484)
T KOG1405|consen 138 KGQKQVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEELESCMINQAPGAPDLSVLSFKGAFHGRTFGSLSTTHSKP 217 (484)
T ss_pred chHHHHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCCCCceeeeeeccccccccccccccccCcc
Confidence 777899999999999999999999887643 21 2 356799999999999999999888766
Q ss_pred chhhhhccCCCeeEeCCCCCCCCC-CCCChh-HHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNIN-KGNSAN-EIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
.++.-.|- .++...++|.....- .....+ ...+.+++++|+.|.++. ..++++|+|| ++++||....+++|++
T Consensus 218 IHKldiPa-FdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEP-IQsEGGDnhaSp~Ff~ 295 (484)
T KOG1405|consen 218 IHKLDIPA-FDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEP-IQSEGGDNHASPDFFR 295 (484)
T ss_pred ccccCCCC-CCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEeec-hhccCCCccCCHHHHH
Confidence 66533332 233344555433221 011111 123457899999998883 4799999999 9999999999999999
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC--CceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccc
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH 304 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~--~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~ 304 (430)
.|+++|+|||+.+|+||||||.|-||+.|+.+++++. ||++||||-+..|+ .+-.++++ + ..++.+
T Consensus 296 kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gG-----ffh~~~fr----p---n~pYri 363 (484)
T KOG1405|consen 296 KLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGG-----FFHDEEFR----P---NEPYRI 363 (484)
T ss_pred HHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCc-----cccCcccC----C---CchHHH
Confidence 9999999999999999999999999999999999985 89999999765431 33333332 2 224557
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHH
Q psy14484 305 SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKK 382 (430)
Q Consensus 305 ~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~ 382 (430)
..||.+.|.-..-..++++.++++++.+.++..++.|..+|.+| ..+|. +...+|+|.|++++++ ++. .-+.
T Consensus 364 fNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~p-s~~-----~Rdk 437 (484)
T KOG1405|consen 364 FNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCP-SGS-----IRDK 437 (484)
T ss_pred hhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCC-ChH-----HHHH
Confidence 78999999988888888999999999999999999999999999 67786 6678999999999998 532 2367
Q ss_pred HHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 383 FFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 383 ~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++..++-+|+.+..|| ..|||+|++..++-+.+.++++|.+++..
T Consensus 438 ~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 438 LILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred HHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 9999999999999887 68999999999999999999999998865
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=286.98 Aligned_cols=353 Identities=16% Similarity=0.143 Sum_probs=245.0
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCC-CCCHHHHHHHHHHHhhcc--cc-cc-CCCCCHHHHHHHHH
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLE--HV-ML-SNLTHKPVIKLSEK 85 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~--~~-~~-~~~~~~~~~~l~~~ 85 (430)
.++++++.+++|. ++||.||++||||.+ +.++| |+||+|++|+.+++++.+ .. .. ....++..+++++.
T Consensus 26 ~~~~~~~~~~~G~---~~~d~~g~~~ld~~s---~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~ 99 (402)
T PRK07505 26 GLNGLTVGEREGI---LITLADGHTFVNFVS---CSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEA 99 (402)
T ss_pred ccccceeeccCCc---cEEecCCceEEEeec---CCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHH
Confidence 3455788888887 799999999999988 36899 999999999999998753 11 11 12456788999999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
|++.++. +.++++||++|++.++++++... .+ +++.++|+++.+||+....... ... ...++..
T Consensus 100 la~~~~~---~~~~~~sG~~a~~~ai~~~~~~~-~~--~~~~~vi~~~~~~H~s~~~~~~------~~~----~~~~v~~ 163 (402)
T PRK07505 100 LSELFGA---SVLTFTSCSAAHLGILPLLASGH-LT--GGVPPHMVFDKNAHASLNILKG------ICA----DETEVET 163 (402)
T ss_pred HHHHhCC---CEEEECChHHHHHHHHHHHHhcc-cC--CCCCCEEEEchhhhHhHHhhhh------hhh----cCCeEEE
Confidence 9999863 67777799999999999876421 11 1456788999999985321111 110 0123344
Q ss_pred eCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
++++ |++++++++++ ....++++|| ++++ |.+.+ +++|.++|++||++||+||+|
T Consensus 164 ~~~~-----------------d~~~l~~~~~~--~~~~~vl~~p-~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~ 218 (402)
T PRK07505 164 IDHN-----------------DLDALEDICKT--NKTVAYVADG-VYSM-GGIAP----VKELLRLQEKYGLFLYIDDAH 218 (402)
T ss_pred eCCC-----------------CHHHHHHHHhc--CCCEEEEEec-cccc-CCcCC----HHHHHHHHHHcCCEEEEECcc
Confidence 5443 88999998863 4578889999 8766 54666 899999999999999999998
Q ss_pred --cCCCCcccccccccCCC-CCcee----eeecccCCCccccEEEEE-cHHHHHhhhccCCcccccccCCCCC--CHHHH
Q psy14484 246 --VGCGRTGKFFACEHAEI-WPDFL----CLSKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSG--NPLAC 315 (430)
Q Consensus 246 --~g~g~~g~~~~~~~~~~-~~d~~----~~sK~l~gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~ 315 (430)
++++++|..+..+..+. .||.+ ++||+++++ .|+++. ++++.+.+.. ..+..||++ +++++
T Consensus 219 ~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~------~~~~~t~~~~~~~~a~ 289 (402)
T PRK07505 219 GLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILR------YAGPLAFSQSLNVAAL 289 (402)
T ss_pred cccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHH------hCCCceeCCCCCHHHH
Confidence 46788887666666676 57744 799998864 256654 6788777764 234455544 45788
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe
Q psy14484 316 CAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 316 ~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~ 395 (430)
+++.++++.+.++.+.+... ++++.++.+... ....+++.+.++..... .+ ...+..+++.|+++||++.
T Consensus 290 aa~~a~l~~~~~~~~~~~~~----~l~~~~~~~~~~-~~~~~~g~~~~i~~~~~-~~----~~~~~~~~~~l~~~Gi~v~ 359 (402)
T PRK07505 290 GAILASAEIHLSEELDQLQQ----KLQNNIALFDSL-IPTEQSGSFLPIRLIYI-GD----EDTAIKAAKQLLDRGFYTS 359 (402)
T ss_pred HHHHHHHHHHhccCcHHHHH----HHHHHHHHHHHH-HHhcCCCCCCCEEEEEe-CC----HHHHHHHHHHHHHCCCeEe
Confidence 88888888665544433222 223333222110 00122444444433222 11 1124679999999999998
Q ss_pred ec-------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 396 PI-------G-NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 396 ~~-------~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+. + +++||+|++.+|++|+++++++|++++.+-+
T Consensus 360 ~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~~ 401 (402)
T PRK07505 360 PVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDEGL 401 (402)
T ss_pred eecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHhhc
Confidence 64 2 5899999999999999999999999988654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=286.53 Aligned_cols=351 Identities=14% Similarity=0.169 Sum_probs=254.9
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc----CCCCCHHHHHHHHHHHhh
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~ 89 (430)
.++.+++|. +++ .+|++|+||.++. ++|. +||+|++++.+++++++..+. ++++++.+.++++.|++.
T Consensus 94 ~~~~~~~G~---~i~-~~G~~~id~~s~~---~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~ 166 (481)
T PLN02822 94 PVLESAAGP---HTI-INGKDVVNFASAN---YLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKF 166 (481)
T ss_pred CceecCCCC---eEE-ECCceEEEeECCC---cCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHH
Confidence 366666665 788 7999999999874 4454 599999999999998654221 346678899999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
++ ..+.++|++|++ ++..++++.. ++..+|++++.||+....+..+++. ..++++++
T Consensus 167 ~~-~~~~i~~s~G~~-a~~sai~a~~---------~~gd~Ii~d~~~H~s~~~~~~ls~~------------~~~~~~~n 223 (481)
T PLN02822 167 LG-TPDSILYSYGLS-TIFSVIPAFC---------KKGDIIVADEGVHWGIQNGLYLSRS------------TIVYFKHN 223 (481)
T ss_pred hC-CCCEEEECCHHH-HHHHHHHHhC---------CCCCEEEEeCCccHHHHHHHHHcCC------------eEEEECCC
Confidence 97 557788876665 7788888654 4445666889999876555554431 22333332
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCC------CCe-EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEe
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNH------NKI-AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~-~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~D 242 (430)
|.+.++..+++.. +++ ++|++|+ +++++|.+.| +++|.++|++||++||+|
T Consensus 224 -----------------d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~-i~~~~G~i~~----L~~i~~l~~k~~~~LIvD 281 (481)
T PLN02822 224 -----------------DMESLRNTLEKLTAENKRKKKLRRYIVVEA-IYQNSGQIAP----LDEIVRLKEKYRFRVLLD 281 (481)
T ss_pred -----------------CHHHHHHHHHHHhhhhcccCCCcEEEEEec-CCCCCCCccC----HHHHHHHHHHcCCEEEEE
Confidence 4455555554321 234 8999999 9999998888 999999999999999999
Q ss_pred cccc--CCCCcccccccccCCC---CCceee--eecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCC--HH
Q psy14484 243 EIAV--GCGRTGKFFACEHAEI---WPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN--PL 313 (430)
Q Consensus 243 Ev~~--g~g~~g~~~~~~~~~~---~~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~ 313 (430)
|+|+ .+|++|.+ ..+++++ .+|+++ |||+++. .-|++++++++++.+.. ..++.+|+++ +.
T Consensus 282 Ea~s~gvlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~---~GG~i~g~~~ii~~~~~------~~~~~~fsa~lPp~ 351 (481)
T PLN02822 282 ESNSFGVLGKSGRG-LSEHFGVPIEKIDIITAAMGHALAT---EGGFCTGSARVVDHQRL------SSSGYVFSASLPPY 351 (481)
T ss_pred CCccccccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhh---CCeEEEcCHHHHHHHHh------cCCceeeccccCHH
Confidence 9998 34555543 4566776 688887 7799973 12678899999888764 2356677765 67
Q ss_pred HHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHH-
Q psy14484 314 ACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAAL- 388 (430)
Q Consensus 314 ~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~- 388 (430)
.++++.++|+.++. ++..++++++++++++.|+++...+. ...+.+.++.+.+. .... ........+++.|+
T Consensus 352 ~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~--~~~~~spi~~l~l~-~~~~~~~~~~~~~~~~~~~Ll~ 428 (481)
T PLN02822 352 LASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIPGLSI--GSNTLSPIVFLHLE-KSTGSAKEDLSLLEHIADRMLK 428 (481)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCCCEEEEEeC-CCcccccchHHHHHHHHHHHHh
Confidence 78888889987765 56888999999999999987532222 11234555556654 3101 01122467899987
Q ss_pred HCCcEEeec----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhhC
Q psy14484 389 KNELLLRPI----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430 (430)
Q Consensus 389 ~~Gv~~~~~----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~~ 430 (430)
++||++.+. +..+|++++..+|+++|++++++|++++.++++
T Consensus 429 e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 429 EDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred cCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 789999964 136999999999999999999999999998873
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=266.18 Aligned_cols=333 Identities=15% Similarity=0.145 Sum_probs=244.4
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+|+++++|+++ ++||. +||+|++++.++++++.... ...+.++...+++++|+++++ .+++++++||++|
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--~~~~~~~~SG~~A 117 (406)
T PRK13393 43 GPREVTVWCSN---DYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG--KEAALLFTSGYVS 117 (406)
T ss_pred CCccEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC--CCcEEEeCCcHHH
Confidence 46899999996 78998 69999999999998865421 112345678999999999995 4788899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
++.|++++... .++.+|+++..||+++.......+. +...++.+
T Consensus 118 n~~ai~~l~~~-------~~g~~I~~~~~~H~s~~~~~~~~g~------------~~~~~~~~----------------- 161 (406)
T PRK13393 118 NWAALSTLGSR-------LPGCVILSDELNHASMIEGIRHSRA------------EKRIFRHN----------------- 161 (406)
T ss_pred HHHHHHHhhcC-------CCCCEEEEccchhHHHHHHHHHcCC------------eEEEeCCC-----------------
Confidence 99999965431 1335788888999987765544321 11233322
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CC-CCcccccccccCCCC
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACEHAEIW 263 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~-g~~g~~~~~~~~~~~ 263 (430)
|++.+++.++.. ++++++|++|+ +++++|.+.| +++|.++|+++|+++|+||+|+ |+ |+.|..+ .+..++.
T Consensus 162 d~~~l~~~l~~~~~~~~~~v~~~~-v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~-~~~~~~~ 235 (406)
T PRK13393 162 DPADLERKLSDLDPHRPKLVAFES-VYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGI-AEREGLA 235 (406)
T ss_pred CHHHHHHHHHhccCCCCEEEEEcC-CCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch-hhhcCCC
Confidence 677778777654 24678999999 9999998888 9999999999999999999997 66 6666543 2444543
Q ss_pred --Ccee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHH
Q psy14484 264 --PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN-ILQRISQDM 338 (430)
Q Consensus 264 --~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~-~~~~~~~~~ 338 (430)
+|++ +|||+++. .-|++++++++.+.+.. ..+. +..+.+.++.+++++.++|+.+++.. ...+++++.
T Consensus 236 ~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~--~~~~--~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~ 308 (406)
T PRK13393 236 DRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRS--FASG--FIFTTSLPPAVAAGALASVRHLKASSAERERHQDRV 308 (406)
T ss_pred CCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHH--hCcC--ceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 5776 89999974 12567888888877765 1111 12355668888888999998775432 235567788
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------C-CEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------G-NTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~-~~lR~~~~~~~ 409 (430)
+++++.|+++ ..+ .+++.|.++.+.+. + ...+.++.+.|++ +||++.+. + +.+||+|++.+
T Consensus 309 ~~l~~~L~~~-g~~---~~~~~~~i~~v~~~-~-----~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~ 378 (406)
T PRK13393 309 ARLRARLDKA-GIP---HLPNPSHIVPVMVG-D-----PVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLH 378 (406)
T ss_pred HHHHHHHHHc-CCC---cCCCCCCeEEEEeC-C-----HHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCC
Confidence 8899988765 222 23566777766544 2 1124678899987 59998752 2 68999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
|++|+++++++|++++.++
T Consensus 379 t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 379 TDADIEHLVQALSEIWARL 397 (406)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988754
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.06 Aligned_cols=333 Identities=17% Similarity=0.223 Sum_probs=241.5
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc----CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+|+++++|+++ ++||. .||+|++|+.+++++++.... ..+.++...++++.+++.++ .+..++++||++|
T Consensus 43 ~~~~~~~~~sn---~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--~~~~l~~~sG~~a 117 (402)
T TIGR01821 43 GAKDVTVWCSN---DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--KESALVFTSGYVA 117 (402)
T ss_pred CCeeEEEeEcc---CcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--CCeEEEECchHHH
Confidence 46999999986 78887 499999999999988653211 12456788999999999995 3578888999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
|+.++++++.. .++.+++.+..||+.........+.+ ....+.+
T Consensus 118 n~~ai~~l~~~-------~~~~~v~~~~~~h~s~~~~~~~~g~~------------~~~~~~~----------------- 161 (402)
T TIGR01821 118 NDATLATLAKI-------IPGCVIFSDELNHASMIEGIRHSGAE------------KFIFRHN----------------- 161 (402)
T ss_pred HHHHHHHhhCC-------CCCCEEEEcchHhHHHHHHHHHcCCe------------EEEECCC-----------------
Confidence 99999988743 23456777778998766555433311 1122222
Q ss_pred HHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CC-CCcccccccccCCC-
Q psy14484 187 AIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACEHAEI- 262 (430)
Q Consensus 187 d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~-g~~g~~~~~~~~~~- 262 (430)
|++++++.++... +++++|++++ +++++|.+.| +++|.++|++||+++|+||+|+ |+ +..|.. ..+..++
T Consensus 162 d~~~l~~~l~~~~~~~~~~v~~e~-~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~g-~~~~~~~~ 235 (402)
T TIGR01821 162 DVAHLEKLLQSVDPNRPKIIAFES-VYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGGG-IAERDGLM 235 (402)
T ss_pred CHHHHHHHHHhccCCCCeEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCCc-cchhccCC
Confidence 6778888886543 3678999999 9999998888 9999999999999999999998 42 333332 2334444
Q ss_pred -CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHH
Q psy14484 263 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDM 338 (430)
Q Consensus 263 -~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~-~~~~~~~~~~ 338 (430)
.+|++ +|||+++. .-|++++++++++.+.. ...+ ...+.+.++.+++++.++|+.+++. ...++.+++.
T Consensus 236 ~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~--~~~~--~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~ 308 (402)
T TIGR01821 236 HRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRS--YAPG--FIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENV 308 (402)
T ss_pred CCCeEEEEechhhhcc---CCceeecCHHHHHHHHH--hCcC--ceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 46777 89999974 12568889898887764 1111 1234567888899999999977653 3456667888
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------C-CEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------G-NTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~-~~lR~~~~~~~ 409 (430)
+++++.|+++ ..+. +.+.+.++.+.+. . ...+..+++.|++ +||++.+. + +++|+++++.+
T Consensus 309 ~~l~~~L~~~-g~~~---~~~~~~i~~i~~~-~-----~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~ 378 (402)
T TIGR01821 309 KRLKNLLEAL-GIPV---IPNPSHIVPVIIG-D-----AALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAH 378 (402)
T ss_pred HHHHHHHHHc-CCCc---CCCCCCEEEEEeC-C-----HHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCC
Confidence 8999988876 3332 2335667666554 2 1124678888875 59998763 2 68999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
|++|+++++++|+++++++
T Consensus 379 t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 379 TDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999998764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=261.17 Aligned_cols=332 Identities=17% Similarity=0.191 Sum_probs=239.8
Q ss_pred CCEEEecccccccccCCCC-CHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
|++++||+++ ++||++ ||+|++++.++++++.... ...+.++...++++.|+++++ .+..+++++|++|+
T Consensus 45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g--~~~~~~~~sG~~an 119 (407)
T PRK09064 45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG--KEAALVFTSGYVSN 119 (407)
T ss_pred CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC--CCcEEEECcHHHHH
Confidence 5899999985 789997 9999999999998764321 112356788999999999985 35677788899999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.++++++.+ ..+.+++.+..+|+.........+. .....+.+ |
T Consensus 120 ~~ai~~l~~~-------~~~~~i~~~~~~h~s~~~~~~~~~~------------~~~~~~~~-----------------d 163 (407)
T PRK09064 120 DATLSTLAKL-------IPDCVIFSDELNHASMIEGIRRSRC------------EKHIFRHN-----------------D 163 (407)
T ss_pred HHHHHHHhCC-------CCCCEEEEeCcchHHHHHHHHHcCC------------cEEEECCC-----------------C
Confidence 9999988653 1234566666667665443332221 11222222 6
Q ss_pred HHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-CCCcccccccccCCC--
Q psy14484 188 IFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFACEHAEI-- 262 (430)
Q Consensus 188 ~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g-~g~~g~~~~~~~~~~-- 262 (430)
++++++.++... +++++|++++ +++++|.+.| +++|.++|+++|++||+||+|+ | +|+.|..+ .+..++
T Consensus 164 ~~~le~~l~~~~~~~~~~v~~~~-v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~ 237 (407)
T PRK09064 164 VAHLEELLAAADPDRPKLIAFES-VYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMD 237 (407)
T ss_pred HHHHHHHHHhccCCCCeEEEEeC-CCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCC
Confidence 788888887543 4688999999 9999998888 9999999999999999999998 5 46666543 344444
Q ss_pred CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC-HHHHHHHHHH
Q psy14484 263 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN-ILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~-~~~~~~~~~~ 339 (430)
.+|++ ||||+++. .-|++++++++++.+... ..+ +..+.+.++.+++++.++++.++..+ ..++++++.+
T Consensus 238 ~~div~~t~sKa~g~---~GG~~~~~~~~~~~l~~~--~~~--~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~ 310 (407)
T PRK09064 238 RIDIIEGTLAKAFGV---MGGYIAGSAALVDAVRSY--APG--FIFTTSLPPAIAAAALASIRHLKESNEERERHQERAA 310 (407)
T ss_pred CCeEEEEecchhhhc---cCceEecCHHHHHHHHHh--Ccc--ccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 46887 89999873 226688898888876541 111 22344667888888889998876543 3577888999
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec--------CCEEEEeCCCCCC
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI--------GNTVYLMPPYILN 410 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~--------~~~lR~~~~~~~t 410 (430)
++.+.|+++ ..+.+ ...+.++.+.+. +. ..+..+.+.|++ +||++.+. .+++||++++.+|
T Consensus 311 ~l~~~L~~~-g~~~~---~~~~~iv~i~~~-~~-----~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t 380 (407)
T PRK09064 311 KLKAALDAA-GIPVM---PNESHIVPVMVG-DP-----EKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHT 380 (407)
T ss_pred HHHHHHHHc-CCCCC---CCCCCEEEEEeC-CH-----HHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCC
Confidence 999999875 22222 234566655554 21 114678888875 59998753 2579999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14484 411 KNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 411 ~e~i~~~~~~l~~~l~~~ 428 (430)
++|+++++++|++++.++
T Consensus 381 ~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 381 DEMIDHLVEALVEVWARL 398 (407)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999988754
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=240.89 Aligned_cols=330 Identities=19% Similarity=0.207 Sum_probs=252.2
Q ss_pred EECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCc
Q psy14484 29 IDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDG 103 (430)
Q Consensus 29 ~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sg 103 (430)
.-.+|++++||+|| ++||. +||++++++.+++++++.. ....+.++.+.+|++.|++++ +.+..++++||
T Consensus 34 ~~~~~~~~~nf~SN---dYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~--g~e~al~f~SG 108 (388)
T COG0156 34 IRADGRKVLNFCSN---DYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFL--GAEAALLFSSG 108 (388)
T ss_pred eecCCceeEeeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHh--CCCcEEEEccc
Confidence 44569999999996 78998 5999999999999985432 123466789999999999999 77889999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHH
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (430)
..||..++..+. +++.+|+.+.-.|.+......++..+ .+.+.|
T Consensus 109 y~AN~~~i~~l~---------~~~dli~~D~lnHASiidG~rls~a~--------------~~~f~H------------- 152 (388)
T COG0156 109 FVANLGLLSALL---------KKGDLIFSDELNHASIIDGIRLSRAE--------------VRRFKH------------- 152 (388)
T ss_pred chhHHHHHHHhc---------CCCcEEEEechhhhhHHHHHHhCCCc--------------EEEecC-------------
Confidence 999999999887 45778888999999877777766532 233444
Q ss_pred HHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--ccccc
Q psy14484 184 ARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACE 258 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~~~ 258 (430)
||++.||+.+++.. .+...|++|. |.++.|.+.| |++|.+++++|+++|++||+|+ +|..|. .+..+
T Consensus 153 --nD~~~Le~~l~~~~~~~~~~~~Ivteg-VfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e 224 (388)
T COG0156 153 --NDLDHLEALLEEARENGARRKLIVTEG-VFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAE 224 (388)
T ss_pred --CCHHHHHHHHHhhhccCCCceEEEEec-cccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHH
Confidence 48999999998741 1478999999 9999999999 9999999999999999999997 555553 23345
Q ss_pred cCCCCC---cee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHH
Q psy14484 259 HAEIWP---DFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 332 (430)
Q Consensus 259 ~~~~~~---d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~ 332 (430)
+.|+.+ |++ ||||++|.. -|++.+++.+.+.+.. ..+++.++.. .+|..++++.++++.+++ ++.++
T Consensus 225 ~~g~~~~~vdi~~gTlsKAlGs~---Gg~v~g~~~~~d~L~~--~ar~~ifSta--lpP~~aaa~~~al~~l~~~~~~r~ 297 (388)
T COG0156 225 HFGLEPEEVDIIVGTLGKALGSS---GGYIAGSAALIDYLRN--RARPFIFSTA--LPPAVAAAALAALRILEEGPERRE 297 (388)
T ss_pred HhCCCCccceEEEEEchhhhccc---CceeeCcHHHHHHHHH--hCCceeccCC--CCHHHHHHHHHHHHHHHhCHHHHH
Confidence 666653 333 899999862 2678999999988876 4556655443 367777788899998875 57788
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEe
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLM 404 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~ 404 (430)
+++++..++++.++.. .+.. .+....++.+.+. + ...+.++...|+++||.+.+- ...+|++
T Consensus 298 ~L~~~~~~~~~~~~~~-~~~~---~~s~s~I~pv~~g-d-----~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~ 367 (388)
T COG0156 298 RLQELAAFFRSLLKAL-GLVL---LPSESPIIPVILG-D-----EERALEASRALLEEGIYVSAIRPPTVPKGTARLRIT 367 (388)
T ss_pred HHHHHHHHHHHHHHhc-CCcc---CCCCCCeeeeEeC-C-----HHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEE
Confidence 9999999998666543 2111 1222233444444 2 222578899999999998752 2689999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~ 424 (430)
++..+|+++|+.+++.|.++
T Consensus 368 lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 368 LTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998764
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=248.81 Aligned_cols=338 Identities=12% Similarity=0.158 Sum_probs=234.2
Q ss_pred EecccccccccCCC-CCHHHHHHHHHHHhhcccc---cc-CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 37 LDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV---ML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 37 lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~-~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
|||+++ ++||. .||++++++.+++++++.. .+ .+.....+.+|++.++++++ .+..++++||+.|+..++
T Consensus 1 ~~f~s~---dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g--~e~al~~~sG~~a~~~~i 75 (392)
T PLN03227 1 LNFATH---DFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG--TESAILYSDGASTTSSTV 75 (392)
T ss_pred CCCcCc---CccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC--CCcEEEecCcHHHHHHHH
Confidence 467764 77887 5999999999999875422 11 13345678899999999995 457788889988988888
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
..+.. +.+.|++.++.|. .......++. .....+++.+ ..+++.+
T Consensus 76 ~~l~~--------~GD~Vl~~~~~h~-s~~~~~~l~~------------~~~~~~~~~d--------------~~~l~~~ 120 (392)
T PLN03227 76 AAFAK--------RGDLLVVDRGVNE-ALLVGVSLSR------------ANVRWFRHND--------------MKDLRRV 120 (392)
T ss_pred HHhCC--------CCCEEEEeccccH-HHHHHHHHcC------------CeEEEeCCCC--------------HHHHHHH
Confidence 77643 5677777666654 3322222111 1112222221 0133333
Q ss_pred HHHHHhC--------CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc--CCCCcccccccccCC
Q psy14484 192 EILLKKN--------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV--GCGRTGKFFACEHAE 261 (430)
Q Consensus 192 e~~l~~~--------~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~--g~g~~g~~~~~~~~~ 261 (430)
.+.+... ..++..|++|+ +++++|.+.| +++|.++|++||+++|+||+|+ .+|++|. +..++++
T Consensus 121 ~~~i~~~~~a~~~~~~~~t~~vi~E~-v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g 194 (392)
T PLN03227 121 LEQVRAQDVALKRKPTDQRRFLVVEG-LYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAG 194 (392)
T ss_pred HHHhhhhccccccccCCCcEEEEEcC-CcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcC
Confidence 3333211 13578999999 9999998888 9999999999999999999997 2344444 5678888
Q ss_pred CCC----ceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCC--HHHHHHHHHHHHH-HhhcCHHHHH
Q psy14484 262 IWP----DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN--PLACCAALATLEI-FNKDNILQRI 334 (430)
Q Consensus 262 ~~~----d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~aa~~~l~~-~~~~~~~~~~ 334 (430)
+.| |++++|++-+.| ...|++++++++++.+.. ..++.+|+++ |..+.++.++++. ++.+++.+++
T Consensus 195 ~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~~~~~------~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l 267 (392)
T PLN03227 195 LKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVDHQRL------SGSGYCFSASAPPFLAKADATATAGELAGPQLLNRL 267 (392)
T ss_pred CCCCCCceEEEeechhhhh-ccCcEEecCHHHHHHHHH------hCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 888 999877443333 355778889888776653 2356677765 6667777777654 4556788999
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEee--------cceEEEEEEeecCCccc----hhHHHHHHHHHHHCCcEEeec-----
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQ--------KGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPI----- 397 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~----~~~a~~~~~~l~~~Gv~~~~~----- 397 (430)
++++++|+++|++. .++.+..+++ .|.++.+++. +..... ......+++.|+++|+++.+.
T Consensus 268 ~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~ 345 (392)
T PLN03227 268 HDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLS-DQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVK 345 (392)
T ss_pred HHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeC-CHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccC
Confidence 99999999999863 4454444444 3567888876 422111 112358999999999988642
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 -------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 -------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
...+|++++..+|+|||++++++|++++++++
T Consensus 346 ~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~~ 384 (392)
T PLN03227 346 KFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAIL 384 (392)
T ss_pred CcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 24689999999999999999999999998765
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-30 Score=248.80 Aligned_cols=341 Identities=16% Similarity=0.181 Sum_probs=239.3
Q ss_pred cccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHH
Q psy14484 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLS 83 (430)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~ 83 (430)
+.+++.+++..+++|. +++|.+|++||||. +||+|++++.+++++.+.. .......+...+++
T Consensus 39 ~~~~~~~~~~~~~~g~---~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le 105 (407)
T PRK07179 39 KNWNGKHLVLGKTPGP---DAIILQSNDYLNLS----------GHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFE 105 (407)
T ss_pred cCcCCceEEeecCCCC---cEEEeecCCccCCC----------CCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHH
Confidence 3456788888878776 58899999999976 5899999999999875321 11122335778999
Q ss_pred HHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCe
Q psy14484 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKT 163 (430)
Q Consensus 84 ~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (430)
+.|++.++ .+.+++++||++|++.+++++.. +++.|++ +...|..........+ .
T Consensus 106 ~~la~~~g--~~~~~~~~sG~~An~~~l~~l~~--------~g~~v~~-~~~~h~s~~~~~~~~g--------------~ 160 (407)
T PRK07179 106 KKLAAFTG--FESCLLCQSGWAANVGLLQTIAD--------PNTPVYI-DFFAHMSLWEGVRAAG--------------A 160 (407)
T ss_pred HHHHHHhC--CCcEEEECCHHHHHHHHHHHhCC--------CCCEEEE-ECCcCHHHHHHHHHCC--------------C
Confidence 99999985 46788999999999999998764 3455554 4444433322211111 1
Q ss_pred eEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy14484 164 YIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243 (430)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DE 243 (430)
..+++++ +|+++|++.+++ .++++|++++ +++++|.+.| +++|.++|+++|+++|+||
T Consensus 161 ~~~~~~~---------------~d~~~l~~~l~~--~~~~lV~v~~-v~n~tG~i~p----l~~I~~l~~~~~~~livDe 218 (407)
T PRK07179 161 QAHPFRH---------------NDVDHLRRQIER--HGPGIIVVDS-VYSTTGTIAP----LADIVDIAEEFGCVLVVDE 218 (407)
T ss_pred eEEEecC---------------CCHHHHHHHHHh--cCCeEEEECC-CCCCCCcccc----HHHHHHHHHHcCCEEEEEC
Confidence 1222322 288999999973 2468899999 9999998888 9999999999999999999
Q ss_pred cccCCCC---cccccccccCCCC--Cceee--eecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy14484 244 IAVGCGR---TGKFFACEHAEIW--PDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316 (430)
Q Consensus 244 v~~g~g~---~g~~~~~~~~~~~--~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 316 (430)
+|+ +++ +|..+ +..+++. +|+++ ++|++++ ++|++++++++++.+.. ...+..+++|.. +..++
T Consensus 219 a~~-~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~~g~---~~G~l~~~~~~~~~~~~--~~~~~~~~~t~~--~~~~a 289 (407)
T PRK07179 219 SHS-LGTHGPQGAGL-VAELGLTSRVHFITASLAKAFAG---RAGIITCPRELAEYVPF--VSYPAIFSSTLL--PHEIA 289 (407)
T ss_pred ccc-ccCcCCCCCch-HHhcCCCCCCCEEEeechHhhhc---cCeEEEeCHHHHHHHHH--hCcCeeeCCCCC--HHHHH
Confidence 997 433 33322 3344543 47764 6898863 68999999988776653 111123444443 44445
Q ss_pred HHHHHHHHHhhc-CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe
Q psy14484 317 AALATLEIFNKD-NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 317 aa~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~ 395 (430)
++.++++.++.. +..++++++.+++++.|+++ ... +.+.+.++.+.+. .. .-+..+.+.|.++||.+.
T Consensus 290 a~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~----v~~~~~i~~l~~~-~~-----~~~~~~~~~L~~~GI~~~ 358 (407)
T PRK07179 290 GLEATLEVIESADDRRARLHANARFLREGLSEL-GYN----IRSESQIIALETG-SE-----RNTEVLRDALEERNVFGA 358 (407)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCC----CCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCceEe
Confidence 555677766543 46788999999999999876 222 2245677777654 21 113578889999999743
Q ss_pred ----ec----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 396 ----PI----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 396 ----~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|. .+.+||+++..+|++|+++++++|++++++.
T Consensus 359 ~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 359 VFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred eecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 32 3689999999999999999999999988753
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-30 Score=245.44 Aligned_cols=336 Identities=16% Similarity=0.100 Sum_probs=243.0
Q ss_pred CCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
++++++|+++ ++||. .||++++++.+++++++... ...+.+..++++++.|++++ +.+.+++++||..||
T Consensus 101 ~r~~l~FsSn---dYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~e~all~sSGy~AN 175 (476)
T PLN02955 101 FKKLLLFSGN---DYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KKEDCLVCPTGFAAN 175 (476)
T ss_pred CceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CCCcEEEECChHHHH
Confidence 4799999985 78997 59999999999999875431 22345578889999999999 778899999999999
Q ss_pred HHHHHHHHHhhh---hcCC--CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhH
Q psy14484 108 EVALKMSFHYWY---NKGF--LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182 (430)
Q Consensus 108 ~~al~~~~~~~~---~~g~--~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (430)
..++.++..... ..++ .+++.+|+.+...|.+......++... .+.....++|
T Consensus 176 ~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~----------~~a~~~~f~H------------ 233 (476)
T PLN02955 176 MAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQ----------GNVEVFVYRH------------ 233 (476)
T ss_pred HHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhcccc----------CCceEEEeCC------------
Confidence 999987642100 0000 145667888999998877666544210 0112333454
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--ccccccC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEHA 260 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~~~~~ 260 (430)
||+++|++++++++++.+.|++|+ +.++.|.+.| +++|.++|++||++||+||+|+ +|..|. .+..+.+
T Consensus 234 ---ND~~~Le~~L~~~~~~~~~Vv~Eg-V~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~ 304 (476)
T PLN02955 234 ---CDMYHLNSLLSSCKMKRKVVVTDS-LFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEF 304 (476)
T ss_pred ---CCHHHHHHHHHhCCCCceEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHh
Confidence 499999999987766678999999 9999999988 9999999999999999999997 445554 3445667
Q ss_pred CCCCce----eeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHH
Q psy14484 261 EIWPDF----LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRIS 335 (430)
Q Consensus 261 ~~~~d~----~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~ 335 (430)
++.+|+ .||||++|. ..|++++++++++.+.. ..+++..+ | ..+|..++++.++++.+.. +..+++++
T Consensus 305 g~~~di~ii~~TLsKA~G~---~GGfi~gs~~~~~~l~~--~~~~~ifS-t-alpp~~aaa~laal~l~~~~~~~r~~L~ 377 (476)
T PLN02955 305 NCEADVDLCVGTLSKAAGC---HGGFIACSKKWKQLIQS--RGRSFIFS-T-AIPVPMAAAAYAAVVVARKEKWRRKAIW 377 (476)
T ss_pred CCCCCCcEEEEeCccchhc---cCceeecHHHHHHHHHH--hCCCCeec-c-cccHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 776654 589999973 23569999988888875 23333332 2 3345566677788887754 34557788
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEeCCC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPY 407 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~~~~ 407 (430)
++.++|++.+ ..+. ...++.+.+. + ...+..++++|+++|+++.+. ...+||+++.
T Consensus 378 ~n~~~fr~~~----G~~~------~sPI~pI~ig-~-----~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA 441 (476)
T PLN02955 378 ERVKEFKALS----GVDI------SSPIISLVVG-N-----QEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSA 441 (476)
T ss_pred HHHHHHHHhc----CCCC------CCCEEEEEeC-C-----HHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCC
Confidence 8888887732 2211 1334444444 2 222567899999999998852 2479999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
.||++||+.++++|.++.+.
T Consensus 442 ~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 442 AHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999887654
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-29 Score=245.20 Aligned_cols=342 Identities=16% Similarity=0.150 Sum_probs=239.5
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhh
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~ 89 (430)
.++.+++|. ++++ +|++||||.++ .++|| .+|+|++++++++....... ...+..+...++++.+++.
T Consensus 24 ~~~~~~~g~---~~~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~ 96 (385)
T PRK05958 24 RPREGGAGR---WLVV-DGRRMLNFASN---DYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEW 96 (385)
T ss_pred cccccCCCc---eeEe-CCceEEEeeCC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHH
Confidence 456667666 7997 99999999987 35897 68999999999987643211 1123467788999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
++ .++.+++++|++++..+++.+.. +++.|++.++ +|+.........+ .....++.+
T Consensus 97 ~~--~~~~i~~~~g~~~~~~~l~~~~~--------~gd~V~~~~~-~~~~~~~~~~~~g------------~~~~~~~~~ 153 (385)
T PRK05958 97 FG--AERALLFSSGYAANLAVLTALAG--------KGDLIVSDKL-NHASLIDGARLSR------------ARVRRYPHN 153 (385)
T ss_pred hC--CCcEEEECcHHHHHHHHHHHhCC--------CCCEEEEeCc-cCHHHHHHHHhcC------------CceEEeCCC
Confidence 85 35667778899999888776543 4566776654 4554443333222 122233322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G- 247 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g- 247 (430)
|++++++.++..+++++++++++ +++++|...+ +++|.++|++||+++|+||+|+ |
T Consensus 154 -----------------d~~~l~~~i~~~~~~~~lvi~~~-~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~ 211 (385)
T PRK05958 154 -----------------DVDALEALLAKWRAGRALIVTES-VFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGV 211 (385)
T ss_pred -----------------CHHHHHHHHHhccCCCeEEEEEe-cccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccc
Confidence 77889998875333578889999 9999997776 9999999999999999999996 2
Q ss_pred CCCccccccc-ccCCCCCc---eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 248 CGRTGKFFAC-EHAEIWPD---FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 248 ~g~~g~~~~~-~~~~~~~d---~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
+++.|..+.. ......+| +.++||+++. +.|++++++++.+.+... .+. +..+.+.+++.++++.++|+
T Consensus 212 ~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~aa~~aal~ 284 (385)
T PRK05958 212 LGPQGRGLAAEAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINR--ARP--FIFTTALPPAQAAAARAALR 284 (385)
T ss_pred cCCCCCchHHhhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHh--Ccc--ceecCCCCHHHHHHHHHHHH
Confidence 2333332211 11222455 5589999964 337888898888776531 111 22344567788878888888
Q ss_pred HHhhc-CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----
Q psy14484 324 IFNKD-NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----- 397 (430)
Q Consensus 324 ~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----- 397 (430)
.++.. +..+++.++.+++.+.|+++ ... ..++.|.++.+.+. .. ..+.++++.|.++||.+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~---~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~gI~v~~~~~~~~ 354 (385)
T PRK05958 285 ILRREPERRERLAALIARLRAGLRAL-GFQ---LMDSQSAIQPLIVG-DN-----ERALALAAALQEQGFWVGAIRPPTV 354 (385)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHc-CCC---cCCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCceEecccCCCC
Confidence 77553 56788888899999998875 222 23456777777665 31 11467999999999999752
Q ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 398 ---GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 398 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+++|++++..++++++++++++|++++
T Consensus 355 ~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 355 PAGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 2589999999999999999999998753
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=242.53 Aligned_cols=348 Identities=15% Similarity=0.176 Sum_probs=241.5
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCC-CHHHHHHHHHHHhhcccc-ccCC---CCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHV-MLSN---LTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~-~~~~---~~~~~~~~l~~~l~ 87 (430)
.+.++.+..|. ++++.+|++++||.++ .+||++ +|++++++.+++.+.... ..+. +..+...++++.++
T Consensus 20 ~~~~~~~~~~~---~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia 93 (393)
T TIGR01822 20 SERIITSPQGA---DIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIA 93 (393)
T ss_pred cccccccCCCc---eEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHH
Confidence 45566666666 6888899999999997 678886 999999999999874221 1112 33567789999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+.++ .+++++++||++|+..++..+.. +++.|++.++.|+...... ...+.. ....
T Consensus 94 ~~~g--~~~~ii~~~~~~a~~~~~~~l~~--------~gd~vi~~~~~~~s~~~~~-~~~~~~------------~~~~- 149 (393)
T TIGR01822 94 AFLG--TEDTILYASCFDANGGLFETLLG--------AEDAIISDALNHASIIDGV-RLCKAK------------RYRY- 149 (393)
T ss_pred HHhC--CCcEEEECchHHHHHHHHHHhCC--------CCCEEEEeccccHHHHHHH-HhcCCc------------eEEe-
Confidence 9995 35677779999999988876643 5678888777666543322 211110 1111
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
++ +|++++++.+++. ..++++|++++ +++++|.+.+ +++|.++|++||++||+||+
T Consensus 150 -~~---------------~d~~~l~~~i~~~~~~~~~~~~v~~~~-v~~~tG~~~~----l~~i~~la~~~~~~li~De~ 208 (393)
T TIGR01822 150 -AN---------------NDMADLEAQLKEARAAGARHRLIATDG-VFSMDGVIAP----LDEICDLADKYDALVMVDEC 208 (393)
T ss_pred -CC---------------CCHHHHHHHHHhhhhcCCCceEEEEeC-CccCCCCcCC----HHHHHHHHHHcCCEEEEECC
Confidence 11 2788999888753 12788999999 9999998877 99999999999999999999
Q ss_pred ccCCCCcccc--cccccCCC--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 245 AVGCGRTGKF--FACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 245 ~~g~g~~g~~--~~~~~~~~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
|+ ++..+.. ...+..++ .+|++ ++||+++| +++|++++++++++.+.. ....+..++ +.++..++++
T Consensus 209 ~~-~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g--~r~G~~~~~~~~~~~l~~--~~~~~~~~~--~~~~~~~~a~ 281 (393)
T TIGR01822 209 HA-TGFLGPTGRGSHELCGVMGRVDIITGTLGKALGG--ASGGFTTARKEVVELLRQ--RSRPYLFSN--SLPPAVVGAS 281 (393)
T ss_pred cc-ccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhC--CCcEEEEeCHHHHHHHHH--hCccceecC--CCCHHHHHHH
Confidence 95 4333221 11222333 35776 68899875 589999999999887764 111122222 2245555667
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec
Q psy14484 319 LATLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 397 (430)
Q Consensus 319 ~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~ 397 (430)
.++++.++. ++..++++++.+++.+.|+++ .... ..+.+.++.+.+. +. ..+.++++.|.++||.+...
T Consensus 282 ~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~i~~~-~~-----~~~~~l~~~L~~~gI~v~~~ 351 (393)
T TIGR01822 282 IKVLEMLEASNELRDRLWANTRYFRERMEAA-GFDI---KPADHPIIPVMLY-DA-----VLAQRFARRLLEEGIYVTGF 351 (393)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCC---CCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCeeEeee
Confidence 777876643 456788889999999988764 2221 1223445555444 21 11467999999999988631
Q ss_pred -------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -------G-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -------~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+ ..+|+++++.+++++|++++++|+++++++
T Consensus 352 ~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 352 FYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred CCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 469999999999999999999999987653
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=240.50 Aligned_cols=346 Identities=16% Similarity=0.181 Sum_probs=237.2
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~ 87 (430)
.+.++.+++|. +++ .+|++|+||.++ .++|| .+|++++++.+++.+.... ..+.+..+...+++++++
T Consensus 16 ~~~~~~~~~g~---~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~ 88 (385)
T TIGR01825 16 SIRVLESAQGP---RVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLA 88 (385)
T ss_pred cccccccCCCc---eEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHH
Confidence 57778888776 799 999999999874 55899 7999999999998764321 122345678899999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+.++ . +..++.++|++++..+++.+.. +++.|++.++. |+.........+. ....++
T Consensus 89 ~~~g-~-~~~i~~~sG~~a~~~a~~~~~~--------~gd~vi~~~~~-~~~~~~~~~~~g~------------~~~~~~ 145 (385)
T TIGR01825 89 KFKK-T-EAALVFQSGFNTNQGVLSALLR--------KGDIVLSDELN-HASIIDGLRLTKA------------TKKIYK 145 (385)
T ss_pred HHhC-C-CcEEEECcHHHHHHHHHHHhCC--------CCCEEEEEccc-cHHHHHHHHhcCC------------ceEEeC
Confidence 9886 3 3445556779999988887653 45666665554 4443333222221 111222
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
.+ |++++++.+.+.. .++++|++++ +++++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 146 ~~-----------------d~~~l~~~l~~~~~~~~~~v~~~~-v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~ 203 (385)
T TIGR01825 146 HA-----------------DMDDLDRVLRENPSYGKKLIVTDG-VFSMDGDVAP----LPEIVELAERYGAVTYVDDAHG 203 (385)
T ss_pred CC-----------------CHHHHHHHHHhhccCCCeEEEEec-CCcCCCCccC----HHHHHHHHHHhCCEEEEECccc
Confidence 11 6778888777542 4688999999 9999998777 9999999999999999999997
Q ss_pred C--CCCcccccccccCCCCCc----eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHH
Q psy14484 247 G--CGRTGKFFACEHAEIWPD----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320 (430)
Q Consensus 247 g--~g~~g~~~~~~~~~~~~d----~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~ 320 (430)
. +++.|. .....+++.+| +.+|||++++ +.|++++++++++.+... ...+ ..+...++..++++.+
T Consensus 204 ~~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~a~~~ 275 (385)
T TIGR01825 204 SGVMGEAGR-GTVHHFGLEDKVDIQVGTLSKAIGV---VGGYAAGHKELIEYLKNR--ARPF--LFSTAQPPAVVAALAA 275 (385)
T ss_pred ccCcCCCCC-ccHhhcCCCcCCcEEEEeccHHhhc---CCCEEecCHHHHHHHHHh--Cccc--cccCCCCHHHHHHHHH
Confidence 3 333332 12222333333 4689999963 447888898888877541 1111 1122346677778888
Q ss_pred HHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--
Q psy14484 321 TLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 321 ~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
+++.+.+ .+..++++++.+++.+.|+++ ..+.. .+.+.++.+.+. . ...+..+++.|+++||.+.+.
T Consensus 276 al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~-~-----~~~~~~~~~~L~~~gi~v~~~~~ 345 (385)
T TIGR01825 276 AVDELQRSPELMERLWDNTRFFKAGLGKL-GYDTG---GSETPITPVVIG-D-----EKAAQEFSRRLFDEGIFAQSIVF 345 (385)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC---CCCCCEEEEEEC-C-----HHHHHHHHHHHHHCCcEEcccCC
Confidence 8876643 456778888889999988775 22221 233445555443 2 111357899999999988531
Q ss_pred -----C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -----G-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -----~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+ ..+|++|++.++++++++++++|+++++++
T Consensus 346 ~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~ 382 (385)
T TIGR01825 346 PTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL 382 (385)
T ss_pred CCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 689999999999999999999999988753
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=237.24 Aligned_cols=346 Identities=17% Similarity=0.190 Sum_probs=238.0
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc----CCCCCHHHHHHHHHHHhh
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~ 89 (430)
..+.+++|. +++|++|++|+||.++ .++|+ .+|++.+++++++.+..+... ..+..+..+++++.+++.
T Consensus 26 ~~~~~~~~~---~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~ 99 (397)
T PRK06939 26 RVITSPQGA---DITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKF 99 (397)
T ss_pred ccccCCCCc---eEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHH
Confidence 344555555 7999999999999875 45788 589999999999876432211 124457788999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
++. .+.+++++ |++++..+++++.. +++.|++.++.|++......... .....++.+
T Consensus 100 ~g~-~~~i~~ts-G~~a~~~~~~~l~~--------~gd~vi~~~~~~~~~~~~~~~~~-------------~~~~~~~~~ 156 (397)
T PRK06939 100 LGT-EDAILYSS-CFDANGGLFETLLG--------KEDAIISDALNHASIIDGVRLCK-------------AKRYRYANN 156 (397)
T ss_pred hCC-CcEEEEcC-hHHHHHHHHHHhCC--------CCCEEEEEhhhhHHHHHHHHhcC-------------CceEEeCCC
Confidence 863 35555555 58999998887653 56788888888876543322211 111222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
|++++++.+++. ..+++++++++ +++++|...+ +++|.++|++||+++|+||+|+
T Consensus 157 -----------------d~~~l~~~i~~~~~~~~~~~~v~~~~-v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 157 -----------------DMADLEAQLKEAKEAGARHKLIATDG-VFSMDGDIAP----LPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred -----------------CHHHHHHHHHhhhccCCCCeEEEEec-CcCCCCCcCC----HHHHHHHHHHhCCEEEEECccc
Confidence 678888888642 22688899998 8998887655 9999999999999999999996
Q ss_pred -CC-CCcccccccccCCC--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHH
Q psy14484 247 -GC-GRTGKFFACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320 (430)
Q Consensus 247 -g~-g~~g~~~~~~~~~~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~ 320 (430)
|+ +..|.. .....++ .+|++ ++||+++| +++|++++++++++.+... ......+ .+.++..++++.+
T Consensus 215 ~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~g--~r~G~v~~~~~~~~~l~~~--~~~~~~~--~~~~~~~~~a~~~ 287 (397)
T PRK06939 215 VGFVGENGRG-TVEHFGVMDRVDIITGTLGKALGG--ASGGYTAGRKEVIDWLRQR--SRPYLFS--NSLAPAIVAASIK 287 (397)
T ss_pred ccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhCc--cCceEEEeCHHHHHHHHHh--Ccccccc--CCCCHHHHHHHHH
Confidence 33 222321 2222333 35677 78999964 4899999999998887641 1111111 1234555666777
Q ss_pred HHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--
Q psy14484 321 TLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 321 ~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
+++.+.. ++..++++++.+++.+.|+++ .... ..+.+.++.+.+. .. ..+.++++.|.++||.+.+.
T Consensus 288 al~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~---~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gI~v~~~~~ 357 (397)
T PRK06939 288 VLELLEESDELRDRLWENARYFREGMTAA-GFTL---GPGEHPIIPVMLG-DA-----KLAQEFADRLLEEGVYVIGFSF 357 (397)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCCc---CCCCCCEEEEEEC-CH-----HHHHHHHHHHHHCCceEeeeCC
Confidence 7776643 356778888888888888765 2211 2244556554443 21 11367999999999988642
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|+++++.++++++++++++|++++.++
T Consensus 358 ~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 358 PVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 2579999999999999999999999998765
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=231.96 Aligned_cols=337 Identities=16% Similarity=0.130 Sum_probs=242.8
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcC--CCCCe-EEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGH-CFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~-v~~~~sgteA~~~ 109 (430)
.+++|+..| ...+ ..++.+.+++.+++.... ++....+..++++.+++++.+..+ ..+++ |++|+|+++|+..
T Consensus 28 ~~vi~l~iG--~Pd~-~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~ 104 (393)
T COG0436 28 EDVIDLSIG--EPDF-PTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL 104 (393)
T ss_pred CCEEEeCCC--CCCC-CCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHH
Confidence 468887765 2222 256789999999988764 344455666788888888888865 34555 9999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC---CCCCCCCCCChhHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARC 186 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 186 (430)
++.++.. +++.||+++|+|..+.......++.+ +.++.. +.+..
T Consensus 105 ~~~a~~~--------pGDeVlip~P~Y~~y~~~~~~~gg~~-------------v~v~l~~~~~~f~~------------ 151 (393)
T COG0436 105 AFLALLN--------PGDEVLIPDPGYPSYEAAVKLAGGKP-------------VPVPLDEEENGFKP------------ 151 (393)
T ss_pred HHHHhcC--------CCCEEEEeCCCCcCHHHHHHhcCCEE-------------EEEeCCcCccCCcC------------
Confidence 9999887 67889999999998866655555432 233321 12333
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-c-cccccCCC--
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F-FACEHAEI-- 262 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~-~~~~~~~~-- 262 (430)
|+++|++++. +++++++++. ++|++| .+++++++++|.++|++||+++|.||+|.++.+.|. . ...+..+.
T Consensus 152 d~~~l~~~i~---~ktk~i~ln~-P~NPTG-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~ 226 (393)
T COG0436 152 DLEDLEAAIT---PKTKAIILNS-PNNPTG-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARD 226 (393)
T ss_pred CHHHHHhhcC---ccceEEEEeC-CCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcc
Confidence 8999999996 4789999988 999999 778899999999999999999999999999988774 2 22222221
Q ss_pred -CCceeeeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHH
Q psy14484 263 -WPDFLCLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRIS 335 (430)
Q Consensus 263 -~~d~~~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~ 335 (430)
...+-+|||.++- | ||+|+++++ +++.+.+.. +....+++.+.+++.++.++|+.-+. +...+.++
T Consensus 227 ~~i~i~s~SK~~~mtG-wRvG~~v~~~~~l~~~~~~------~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~ 299 (393)
T COG0436 227 RTITINSFSKTYGMTG-WRIGWVVGPPEELIAALRK------LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYR 299 (393)
T ss_pred eEEEEecccccccccc-cceeEeecChHHHHHHHHH------HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 1223379998764 5 899999999 778777664 33455667888999999999873211 12224466
Q ss_pred HHHHHHHHHHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec---C-----CEEEEeC
Q psy14484 336 QDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI---G-----NTVYLMP 405 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~---~-----~~lR~~~ 405 (430)
++.+.+.+.|.++ +++.... +.|.|+.|.-. +... + ..+|+..|+++ ||.+.|+ + +.+|+
T Consensus 300 ~rrd~l~~~l~~~---~g~~~~~~p~Ga~Y~~~~i-~~~~-d---~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi-- 369 (393)
T COG0436 300 ERRDLLVEALNEI---GGLSVVKPPEGAFYLFPKI-PELL-D---SEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL-- 369 (393)
T ss_pred HHHHHHHHHHHhc---CCeeeccCCCeeEEEEeec-CCCC-C---HHHHHHHHHHhCCEEEecccccCCCCCCCeEEE--
Confidence 6777777777655 4444444 66777776554 3221 1 35788887766 8999985 1 46787
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++..+++++++++++|++.+...
T Consensus 370 s~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 370 SLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred EEecCHHHHHHHHHHHHHHHHhc
Confidence 56677799999999999988653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=236.38 Aligned_cols=333 Identities=15% Similarity=0.191 Sum_probs=228.5
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+|+++++|.++ +++|. .||++++++.++++++.... ......+...+|++.+++.++ . +..++++||++|
T Consensus 44 ~~~~~~~~~sn---~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g-~-~~~i~~~sG~~a 118 (410)
T PRK13392 44 GPRRVTIWCSN---DYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG-K-ESALLFTSGYVS 118 (410)
T ss_pred CCceEEEEECC---CccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC-C-CCEEEECcHHHH
Confidence 57899999985 66777 59999999999998764321 112234567899999999996 3 566777788999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..+++.+.... +++ +|+.+..+|+.........+. +...++.+
T Consensus 119 ~~~~i~~l~~~~------~g~-~vi~~~~~h~s~~~~~~~~g~------------~~~~~~~~----------------- 162 (410)
T PRK13392 119 NDAALSTLGKLL------PGC-VILSDALNHASMIEGIRRSGA------------EKQVFRHN----------------- 162 (410)
T ss_pred HHHHHHHHhcCC------CCC-EEEEehhhhHHHHHHHHHcCC------------eEEEEeCC-----------------
Confidence 999998654321 233 555566788775544433331 11222211
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CC-CCcccccccccCCC-
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GC-GRTGKFFACEHAEI- 262 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~-g~~g~~~~~~~~~~- 262 (430)
|.+.+++.+++. ++++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ |+ +..|..+ .+..++
T Consensus 163 d~~~l~~~l~~~~~~~t~~v~i~~-~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~ 236 (410)
T PRK13392 163 DLADLEEQLASVDPDRPKLIAFES-VYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLM 236 (410)
T ss_pred CHHHHHHHHHhccCCCCEEEEEeC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCCch-hhhccCC
Confidence 455666666544 35788999999 9999998887 9999999999999999999998 44 4444332 233333
Q ss_pred -CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHH
Q psy14484 263 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDM 338 (430)
Q Consensus 263 -~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~-~~~~~~~~~~ 338 (430)
.+|++ +|||+++. +-|++++++++++.+.. ...++ ..+...++++++++.++|+.++.. ...++++++.
T Consensus 237 ~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~--~~~~~--~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~ 309 (410)
T PRK13392 237 DRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRS--FAPGF--IFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRV 309 (410)
T ss_pred CCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHH--hCcch--hccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35766 89999874 22678888888887664 11111 224445677788888899876543 3345677788
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec--------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~--------~~~lR~~~~~~~ 409 (430)
+++++.|+++ ..+. .++.+.++.+.+. .. ..+.++++.|+ ++||++.+. ..++|++++..+
T Consensus 310 ~~l~~~L~~~-g~~~---~~~~~~~~~i~~~-~~-----~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~ 379 (410)
T PRK13392 310 AALKAKLNAN-GIPV---MPSPSHIVPVMVG-DP-----TLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLH 379 (410)
T ss_pred HHHHHHHHHc-CCCC---CCCCCCEEEEEeC-CH-----HHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCC
Confidence 8888888765 2222 2345666554443 21 11367889886 679999863 158999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
|++|+++++++|+++++++
T Consensus 380 t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 380 DDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CHHHHHHHHHHHHHHHHHc
Confidence 9999999999999988754
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-27 Score=226.76 Aligned_cols=335 Identities=15% Similarity=0.127 Sum_probs=227.2
Q ss_pred EeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc----CCCCCHHHHHHHHHHHhhcCC
Q psy14484 18 RSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 18 ~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.++.|. ++. .+|++||||.+| +++|+ .+|++++++.+++........ ..+..+...++++.++++++
T Consensus 4 ~~~~~~---~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~- 75 (360)
T TIGR00858 4 DRGPGP---EVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG- 75 (360)
T ss_pred ccCCCC---eEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC-
Confidence 345555 565 799999999997 57996 789999999999876432211 12234677889999999886
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
..+ .+++++|++++..+++++.. +++.|++.++.|..... .....+ ..+..++.+
T Consensus 76 ~~~-~i~~~~G~~~~~~~l~~~~~--------~gd~v~~~~~~~~~~~~-~~~~~g------------~~~~~~~~~--- 130 (360)
T TIGR00858 76 TEA-ALLFSSGYLANVGVISALVG--------KGDLILSDALNHASLID-GCRLSG------------ARVRRYRHN--- 130 (360)
T ss_pred CCC-EEEECchHHHHHHHHHHhCC--------CCCEEEEEccccHHHHH-HHHhcC------------CceEEecCC---
Confidence 334 45556668888877776543 56677777666554322 222111 122233322
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
|++++++.+++.. .+++++++++ +++++|...+ +++|.++|+++|+++|+||+|+ ++..
T Consensus 131 --------------d~~~l~~~~~~~~~~~~~~v~~~~-~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~ 190 (360)
T TIGR00858 131 --------------DVEHLERLLEKNRGERRKLIVTDG-VFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVL 190 (360)
T ss_pred --------------CHHHHHHHHHHcccCCCeEEEEeC-CccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCc
Confidence 7788999887543 3578888999 8888887777 9999999999999999999997 3332
Q ss_pred cc--ccccccCCCCCc-----eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 252 GK--FFACEHAEIWPD-----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 252 g~--~~~~~~~~~~~d-----~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
+. .......++.++ +.+|||++++ +.|++++++++++.+... ... +..+.+.++..++++.++++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~a~~~al~~ 263 (360)
T TIGR00858 191 GEDGRGTLEHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINR--ART--LIFSTALPPAVAAAALAALEL 263 (360)
T ss_pred CCCCCchHHhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHh--Ccc--ceecCCCCHHHHHHHHHHHHH
Confidence 21 111233344333 5589999875 337899998888776530 111 112233456667777788876
Q ss_pred Hhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------
Q psy14484 325 FNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------ 397 (430)
Q Consensus 325 ~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------ 397 (430)
++. ++..++++++.+++.+.|+++ ... .....+.++++.+. .. ..+.++++.|.++||.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~---~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~gI~v~~~~~~~~~ 333 (360)
T TIGR00858 264 IQEEPWRREKLLALIARLRAGLEAL-GFT---LMPSCTPIVPVIIG-DN-----ASALALAEELQQQGIFVGAIRPPTVP 333 (360)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHc-CCc---cCCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCeeEeeeCCCCCC
Confidence 543 356788888999999999875 222 12345667777665 21 11367999999999999742
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
++++|++++..++++++++++++|+
T Consensus 334 ~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 334 AGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 2589999999999999999998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=206.18 Aligned_cols=340 Identities=16% Similarity=0.177 Sum_probs=246.9
Q ss_pred CceeEEeecCCceeEEEECCC--CEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc----CCCCCHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSG--KRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML----SNLTHKPVIKLSEK 85 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g--~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~----~~~~~~~~~~l~~~ 85 (430)
...++.+.+++ .+..+| +.+|.|++| ++||. +||+|.+|-++++.+++.... -.+....+..|+.+
T Consensus 48 ~erVi~s~q~p----~i~v~G~~k~ilnFcaN---nYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~k 120 (417)
T KOG1359|consen 48 RERVITSRQGP----TIQVKGSDKKILNFCAN---NYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESK 120 (417)
T ss_pred eeeEEeecccc----eEEEeccccceeeeccc---ccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHH
Confidence 35677888887 344555 689999986 78998 599999999999998764421 23566888999999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
++++. +.|..++.+++-.||..++.++.. +++-| .-+.-.|.+.+....+.. .| .+
T Consensus 121 iAqfh--~rED~ilypscfdANag~feail~--------pedAv-fSDeLNhASIIdGirLck--ry-----------~h 176 (417)
T KOG1359|consen 121 IAQFH--GREDTILYPSCFDANAGAFEAILT--------PEDAV-FSDELNHASIIDGIRLCK--RY-----------RH 176 (417)
T ss_pred HHHHh--CCCceEEeccccccchHHHHHhcC--------hhhhh-hccccccchhhhhhHHHh--hh-----------cc
Confidence 99998 678899999999999999988864 44433 334456666554444322 00 01
Q ss_pred eCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
.|+.+++..+.+. ..+.++|+++. +.++.|.+.| +++|.++++|||.++.+||+
T Consensus 177 --------------------~dv~~l~~~l~~a~k~r~klv~TDg-~FSMDGdiaP----l~ei~~La~kYgaLlfiDec 231 (417)
T KOG1359|consen 177 --------------------VDVFDLEHCLISACKMRLKLVVTDG-VFSMDGDIAP----LEEISQLAKKYGALLFIDEC 231 (417)
T ss_pred --------------------chhHHHHHHHHHhhhheEEEEEecc-eeccCCCccc----HHHHHHHHHhcCcEEEEeec
Confidence 1566666665543 45789999999 9999999999 99999999999999999999
Q ss_pred cc-CC-CCcccccccccCCC--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 245 AV-GC-GRTGKFFACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 245 ~~-g~-g~~g~~~~~~~~~~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
|. || |.+|. +.-+..++ .+|++ |+||++||. .-|++.+++++.+.+++ +.+++..+++..+..+++ +
T Consensus 232 HaTgf~G~tGr-Gt~E~~~vm~~vdiinsTLgKAlGga--~GGyttgp~~li~llrq--r~RpylFSnslppavV~~--a 304 (417)
T KOG1359|consen 232 HATGFFGETGR-GTAEEFGVMGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQ--RSRPYLFSNSLPPAVVGM--A 304 (417)
T ss_pred ccceeecCCCC-ChHHHhCCCCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHh--cCCceeecCCCChhhhhh--h
Confidence 87 33 44443 22344554 46766 799999872 34679999999999987 778888777765444433 4
Q ss_pred HHHHHH-HhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee
Q psy14484 319 LATLEI-FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 396 (430)
Q Consensus 319 ~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~ 396 (430)
.++++. +......++.+.+.++|++.++.. .. .+.+.. .+.-+.+. ....+.++++.|+++|+++..
T Consensus 305 ~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-Gf----tIsg~~hPI~pv~lG------da~lA~~~ad~lLk~Gi~Vig 373 (417)
T KOG1359|consen 305 AKAYDLLMVSSKEIQSRQANTQRFREFMEAA-GF----TISGASHPICPVMLG------DARLASKMADELLKRGIYVIG 373 (417)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-Cc----eecCCCCCccceecc------cHHHHHHHHHHHHhcCceEEe
Confidence 455553 345677888899999999988754 11 111111 22223333 344578999999999999873
Q ss_pred c--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 397 I--------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 397 ~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
. ...||+.++..||+||||++++++.++.+
T Consensus 374 fs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr 411 (417)
T KOG1359|consen 374 FSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR 411 (417)
T ss_pred ecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence 2 25799999999999999999999998865
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=227.77 Aligned_cols=325 Identities=11% Similarity=0.101 Sum_probs=217.0
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCC----HHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH----KPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~ 108 (430)
..+|+..| .++++ .+|.+++++.+.+....... ..|+. ++.+.+++++.+.. +.++++|++|+|+++++.
T Consensus 27 ~~i~l~~~--~~~~~-~~~~~~~al~~~l~~~~~~~-~~Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~ 102 (368)
T PRK03317 27 VPVRLNTN--ENPYP-PSPALVADIAEAVAEAAAGL-NRYPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQ 102 (368)
T ss_pred ceeEecCC--CCCCC-CCHHHHHHHHHHHhhhhhhh-ccCCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHH
Confidence 46887776 55665 68899999998865321111 12232 34444555554433 457789999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++++.. +++.|++..|+|+++.......+ .....++..+.+.. |+
T Consensus 103 ~~~~~~~~--------~gd~v~v~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~------------d~ 149 (368)
T PRK03317 103 QLLQAFGG--------PGRTALGFVPSYSMHPIIARGTH-------------TEWVEGPRAADFTL------------DV 149 (368)
T ss_pred HHHHHhcC--------CCCEEEEeCCChHHHHHHHHhcC-------------CeeEEcccCCCCCC------------CH
Confidence 99998875 66789999999988754332211 11122222222222 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee-
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL- 267 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~- 267 (430)
+++++++.+ .+++++++.. ++|++|...+ .+++.++|+..++++|+||+|++|++.|........+..|+++
T Consensus 150 ~~l~~~~~~--~~~~~i~l~~-p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~ 222 (368)
T PRK03317 150 DAAVAAIAE--HRPDVVFLTS-PNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVV 222 (368)
T ss_pred HHHHHHHhc--cCCCEEEEeC-CCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEE
Confidence 999998874 2445555666 7888996766 6666677776689999999999887665433333334456766
Q ss_pred --eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHH
Q psy14484 268 --CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITK 343 (430)
Q Consensus 268 --~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~ 343 (430)
+|||+++ .| +|+|++++++++++.+.. ...++..+++++.++.++|+..+. .+..+++++..+++.+
T Consensus 223 ~~SfSK~~g~~G-lRiG~~~~~~~~~~~l~~--------~~~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~ 293 (368)
T PRK03317 223 SRTMSKAFAFAG-GRLGYLAAAPAVVDALRL--------VRLPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVA 293 (368)
T ss_pred EEechhhhccch-hhhhhhhCCHHHHHHHHh--------cCCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 8999997 57 899999999999988875 224677888988888888864321 1122334444445555
Q ss_pred HHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 344 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.|+.. + +....+.|.++.+... . . +..+++.|+++||.+.+.+ +++|++++ +++++++++++|
T Consensus 294 ~L~~~---g-~~~~~~~~~~~~~~~~-~----~---~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~---~~~~~~~~~~~l 358 (368)
T PRK03317 294 WLREL---G-LRVAPSDANFVLFGRF-A----D---RHAVWQGLLDRGVLIRDVGIPGWLRVTIG---TPEENDAFLAAL 358 (368)
T ss_pred HHHHC---C-CEeCCCCCcEEEEecc-C----C---HHHHHHHHHHCCEEEEeCCCCCeEEEecC---CHHHHHHHHHHH
Confidence 55432 2 2233456666555222 1 1 3678999999999998864 78999855 788999999999
Q ss_pred HHHHHH
Q psy14484 422 FQTFNE 427 (430)
Q Consensus 422 ~~~l~~ 427 (430)
++++..
T Consensus 359 ~~~~~~ 364 (368)
T PRK03317 359 AEVLAT 364 (368)
T ss_pred HHHHHH
Confidence 998764
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=216.37 Aligned_cols=340 Identities=15% Similarity=0.110 Sum_probs=229.0
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCC-------CHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
-|+|..+... -+|++++++...+... ++++.-. ....++.++++++++++++++|+||+||||++
T Consensus 3 iYlD~~ATTp------~~~~v~~~m~~~~~~~--fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsn 74 (386)
T COG1104 3 IYLDNAATTP------VDPEVLEAMLPYLTEV--FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESN 74 (386)
T ss_pred ccccccccCC------CCHHHHHHHHHHHHhh--cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHH
Confidence 4788777632 3799999999988764 1111112 25667888899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
++|++.+....+.+ ++.+.|+.+...|.....+..... ....++.++++..+... |
T Consensus 75 NlaI~g~~~a~~~~---~~~~HIIts~iEH~aVl~~~~~Le---------~~g~~Vtyl~V~~~G~v------------~ 130 (386)
T COG1104 75 NLAIKGAALAYRNA---QKGKHIITSAIEHPAVLNTCRYLE---------RQGFEVTYLPVDSNGLV------------D 130 (386)
T ss_pred HHHHHhhHHhhhcc---cCCCeEEEcccccHHHHHHHHHHH---------hcCCeEEEeCCCCCCeE------------c
Confidence 99999765443222 344556667788876544433221 22345566666554443 8
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
+++|+++|+ +++.+|.+.. +||++|+++| +++|.++|+++++++|+|.||+ +|+.. ++......|++
T Consensus 131 ~e~L~~al~---~~T~LVSim~-aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip----i~~~~~~vD~l 197 (386)
T COG1104 131 LEQLEEALR---PDTILVSIMH-ANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP----IDLEELGVDLL 197 (386)
T ss_pred HHHHHHhcC---CCceEEEEEe-cccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee----ccccccCcceE
Confidence 999999997 6799999999 9999999999 9999999999999999999997 87652 33333347999
Q ss_pred eeecccCCCccccEEEEEcHHHH-HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGITGGYLPLSLVMTTDKIY-NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--NKDNILQRISQDMKKITKA 344 (430)
Q Consensus 268 ~~sK~l~gG~~~ig~~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~--~~~~~~~~~~~~~~~l~~~ 344 (430)
+||-.--+|.-.+|+++.++.+. ..+..++.+..-..++|- |..+.++..+++++. +.+...++++.+.++|.+.
T Consensus 198 s~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsGTe--nv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~ 275 (386)
T COG1104 198 SFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERGLRSGTE--NVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDG 275 (386)
T ss_pred EeehhhccCCCceEEEEECCCCccCceeccCcCCCCCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99964333335799999987653 223222333233344444 333333333444432 2245677888889999888
Q ss_pred HHch-hcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee------------------------cC
Q psy14484 345 LTSL-ITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------------------------IG 398 (430)
Q Consensus 345 l~~l-~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~------------------------~~ 398 (430)
|.+. +..-.... .......+.+.++ .- + .+.+...|..+||.++. ..
T Consensus 276 l~~~~p~~~~~g~~~~rlP~~~~~~f~-gv----~--gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~ 348 (386)
T COG1104 276 LLEIIPDVYLNGDDEPRLPNILNFSFP-GV----E--GESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAH 348 (386)
T ss_pred HHhcCCcEEEcCCcccCCCCeEEEEeC-CC----c--HHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhC
Confidence 8754 22111111 1223334444444 21 1 24455566666776653 23
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..|||+++..+|++|++.+++.|++++.++
T Consensus 349 ~siR~S~g~~tt~eei~~~~~~l~~~i~~l 378 (386)
T COG1104 349 GSIRFSLGRFTTEEEIDAAAEALKEIIKRL 378 (386)
T ss_pred ccEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999998764
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=227.07 Aligned_cols=319 Identities=12% Similarity=0.152 Sum_probs=223.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
+++.++|+..| .+++| .+|++++++.+.+.... .|+.....++++.+++.+++++++|++++|++|++..++
T Consensus 27 ~~~~~i~l~~n--en~~~-~~~~v~~a~~~~~~~~~-----~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 27 GDHSFVKLASN--ENPFG-CSPRVLDELQKSWLDHA-----LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred CCCceEEeCCC--CCCCC-CCHHHHHHHHHHHHhcC-----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 34678998887 67787 67899999988765532 234444567888888888888999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+++.. +++.|++.+|+|.++...+...+ ..+..++.++ ... |++++
T Consensus 99 ~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~v~~v~~~~-~~~------------d~~~l 144 (366)
T PRK01533 99 RAVLK--------AGDNIVTAGATFPQYRHHAIIEG-------------CEVKEVALNN-GVY------------DLDEI 144 (366)
T ss_pred HHhcC--------CCCEEEEcCCcHHHHHHHHHHcC-------------CEEEEeecCC-CCc------------CHHHH
Confidence 98764 56789999999987754333221 2223343321 111 78999
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccCCCCCc---ee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPD---FL 267 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~~~~~d---~~ 267 (430)
+++++ ++++++++.. ++|++|. ..+.+.+++|.++|++++ ++|+||+|..|...+.. .........+. +-
T Consensus 145 ~~~~~---~~~~~v~i~~-P~NPTG~-~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~ 218 (366)
T PRK01533 145 SSVVD---NDTKIVWICN-PNNPTGT-YVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLR 218 (366)
T ss_pred HHHhC---cCCcEEEEeC-CCCCCCC-CcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEe
Confidence 88885 3455666666 7888884 556777899999998876 67789999876433211 11111111223 33
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH----HHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKIT 342 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~----~~~~~~l~ 342 (430)
+|||.++ .| +|+|++++++++++.+.. ...+++.+.+++.++.++|+ +.++.+.+ ++..+++.
T Consensus 219 SfSK~~~l~G-lRiG~~i~~~~~~~~l~~--------~~~~~~~~~~~q~aa~~~l~---~~~~~~~~~~~~~~~r~~~~ 286 (366)
T PRK01533 219 TFSKAYGLAS-FRVGYAVGHEELIEKLNV--------VRLPFNVSSLAQKAATIAFG---DDEFIEEIVRVNTEGLRQYE 286 (366)
T ss_pred CchHHhcChH-HHHhHHhCCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHH
Confidence 7999998 56 899999999999988875 22457788888888888875 23344333 33444444
Q ss_pred HHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+.++.+ + +...++.|+|+++.+. + +..+.+.|+++||.+++.++++|+++. +.++.+.++++|+
T Consensus 287 ~~l~~~---g-~~~~~~~~nf~~~~~~-~--------~~~~~~~l~~~GI~Vr~~~~~iRis~~---~~~~~~~l~~al~ 350 (366)
T PRK01533 287 SFCKEN---E-IPFYQSQTNFIFLPVE-N--------GGEIYEACAHAGFIIRPFPNGVRITVG---TREQNEGVISVLQ 350 (366)
T ss_pred HHHHhC---C-CccCCCcCcEEEEeCC-C--------HHHHHHHHHHCCcEEccCCCceEEeCC---CHHHHHHHHHHHH
Confidence 444433 2 2234567888888764 2 256889999999999998889999866 9999999999999
Q ss_pred HHHH
Q psy14484 423 QTFN 426 (430)
Q Consensus 423 ~~l~ 426 (430)
+++.
T Consensus 351 ~~~~ 354 (366)
T PRK01533 351 QHFE 354 (366)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-26 Score=218.60 Aligned_cols=323 Identities=13% Similarity=0.140 Sum_probs=217.9
Q ss_pred CCEEEecccccccccCCCC-CHHHHHHHHHHHhhcc-------cccc----CCCCCHHHHHHHHHHHhhcCCCCCeEEEc
Q psy14484 33 GKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLE-------HVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYG 100 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~-------~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~v~~~ 100 (430)
..+++||+|+ ++||++ +|++.+++.+++.++. .... ....++.++++++.++++++. +..+++
T Consensus 3 ~~~~~~~~s~---~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~--~~~l~~ 77 (370)
T PRK05937 3 ESLSIDFVTN---DFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA--PEAFIV 77 (370)
T ss_pred CCceEEeECC---CccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CeEEEE
Confidence 3468899885 789984 8999999999887752 1111 112457889999999999963 566788
Q ss_pred CCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCCh
Q psy14484 101 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 180 (430)
Q Consensus 101 ~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
++|+.|+...+.... +++.+|+.+..+|++....+.... . ..+++++
T Consensus 78 ~sG~~a~~~~~~~~~---------~~~d~ii~d~~~H~sv~~~~~~~~--~------------~~~~~~~---------- 124 (370)
T PRK05937 78 PSGYMANLGLCAHLS---------SVTDYVLWDEQVHISVVYSLSVIS--G------------WHQSFRH---------- 124 (370)
T ss_pred CChHHHHHHHHHHhC---------CCCCEEEEEhhhhHHHHHHHHHcC--C------------ceEEecC----------
Confidence 888888864433321 345688899999998766554321 0 0122232
Q ss_pred hHHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-CCCccccc
Q psy14484 181 NEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFF 255 (430)
Q Consensus 181 ~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g-~g~~g~~~ 255 (430)
+|+++|+++++... +++.+|++++ +++++|.+.| +++|.++|+++|+++|+||+|+ | ++.+|..+
T Consensus 125 -----~d~~~l~~~l~~~~~~~~~~~~v~v~~-v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~ 194 (370)
T PRK05937 125 -----NDLDHLESLLESCRQRSFGRIFIFVCS-VYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGF 194 (370)
T ss_pred -----CCHHHHHHHHHhhhccCCCcEEEEEec-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCCch
Confidence 28899999987531 3466788899 9999999998 9999999999999999999998 3 44444322
Q ss_pred ccccCC---CCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc--CH
Q psy14484 256 ACEHAE---IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD--NI 330 (430)
Q Consensus 256 ~~~~~~---~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~--~~ 330 (430)
. ..++ ..+|+.||||++|+. -+++++.+++.+.+.. ...+.. .+.+.++++++++.++++.+.+. ..
T Consensus 195 ~-~~~~~~~~~~~~~tlsK~~g~~---G~~vl~~~~~~~~~~~--~~~~~~--~s~~~~~~~~~a~~aal~~l~~~~~~~ 266 (370)
T PRK05937 195 C-HSLGYENFYAVLVTYSKALGSM---GAALLSSSEVKQDLML--NSPPLR--YSTGLPPHLLISIQVAYDFLSQEGELA 266 (370)
T ss_pred H-HhhCCCCCcEEEEechhhhhcC---ceEEEcCHHHHHHHHH--hCCCCe--ecCCCCHHHHHHHHHHHHHHHhCcHHH
Confidence 1 1122 236778999998752 1345566665554442 111222 23345777777777888877543 24
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----cCCEEEEeCC
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IGNTVYLMPP 406 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~~~~lR~~~~ 406 (430)
.++++++.+++++.|... .+ +....+.+. .. . ...+.+.|.++||.+.. ....+||+++
T Consensus 267 ~~~l~~l~~~l~~~l~~~--~~--------~~~~~i~~~-~~----~--~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~ 329 (370)
T PRK05937 267 RKQLFRLKEYFAQKFSSA--AP--------GCVQPIFLP-GI----S--EQELYSKLVETGIRVGVVCFPTGPFLRVNLH 329 (370)
T ss_pred HHHHHHHHHHHHHhcCCC--CC--------CCEEEEEeC-Ch----h--HHHHHHHHHHCCeeEEeeCCCCCCEEEEEcC
Confidence 456666777776665432 01 111123333 21 1 35788889999998874 2468999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..+|++||+.+++.|++++.++
T Consensus 330 ~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 330 AFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988653
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-26 Score=220.51 Aligned_cols=335 Identities=13% Similarity=0.100 Sum_probs=223.4
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
++..++++..+ .+.++ .+|++.+++.+++..... ..+.......++++.+++.++.+++++++++|+++|+..++
T Consensus 26 ~~~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~~--~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~ 100 (380)
T PRK06225 26 KDKEMIWMGQN--TNHLG-PHEEVREAMIRCIEEGEY--CKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVM 100 (380)
T ss_pred hcCCeEEccCC--CCCCC-CCHHHHHHHHHHHhcCCC--CCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHH
Confidence 34678888766 45565 689999999998765321 11222234578888899998888889999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC---CCCCCCCCChhHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD---SRNINKGNSANEIARCAI 188 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~ 188 (430)
+.++. +++.|++.+++|+.+...... .+ ..+..++... .+. .|+
T Consensus 101 ~~~~~--------~gd~vl~~~p~y~~~~~~~~~-~g------------~~~~~v~~~~~~~~~~------------~d~ 147 (380)
T PRK06225 101 RAFLS--------PGDNAVTPDPGYLIIDNFASR-FG------------AEVIEVPIYSEECNYK------------LTP 147 (380)
T ss_pred HHhcC--------CCCEEEEcCCCCcchHHHHHH-hC------------ceEEeeccccccCCcc------------CCH
Confidence 88754 557799999999865322111 11 1222333211 111 177
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccccc-CCCCCcee
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH-AEIWPDFL 267 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~-~~~~~d~~ 267 (430)
+++++.+. ++++++++.. ++|++| ..++.+.+++|.++|+++|+++|+||+|.+|.. +....... .....++.
T Consensus 148 ~~l~~~~~---~~~~~v~l~~-p~NptG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~i~~~ 221 (380)
T PRK06225 148 ELVKENMD---ENTRLIYLID-PLNPLG-SSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EHTLAAEYAPEHTVTSY 221 (380)
T ss_pred HHHHhhcC---CCceEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cCCchhhcCCCCEEEEe
Confidence 88888875 4566666555 667788 455778899999999999999999999987632 22111111 11223466
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH----HHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKIT 342 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~----~~~~~~l~ 342 (430)
+|||.++ .| +|+|++++++++++.+.. . ...+++.+.+++.++.++|+. ...+.+++ +++.+.+.
T Consensus 222 s~SK~~g~~G-~RiG~i~~~~~l~~~~~~------~-~~~~~~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~~~~~l~ 291 (380)
T PRK06225 222 SFSKIFGMAG-LRIGAVVATPDLIEVVKS------I-VINDLGTNVIAQEAAIAGLKV--KDEWIDRIRRTTFKNQKLIK 291 (380)
T ss_pred echhhcCCcc-ceeEEEecCHHHHHHHHH------H-HhcccCCCHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHH
Confidence 8999997 46 899999999999888765 1 234567788887777776653 22334444 33444455
Q ss_pred HHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEeCCCCCCHHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNKNEI 414 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~~~~~~t~e~i 414 (430)
+.|+++.... +...+..|.++++.+. .... . ..++++.|.++||.+.++ .+++|++++ .+++++
T Consensus 292 ~~L~~~~~~~-~~~~~~~g~~~~~~~~-~~~~-~---~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l 363 (380)
T PRK06225 292 EAVDEIEGVF-LPVYPSHGNMMVIDIS-EAGI-D---PEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQV 363 (380)
T ss_pred HHHHhCcCCc-cccCCCCCeEEEEEcc-cccC-C---HHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeC--CCHHHH
Confidence 5555432211 1223456778877775 3211 1 357888899999998874 247898755 589999
Q ss_pred HHHHHHHHHHHHHh
Q psy14484 415 QHMTSAIFQTFNEV 428 (430)
Q Consensus 415 ~~~~~~l~~~l~~~ 428 (430)
++++++|+++++++
T Consensus 364 ~~~~~~l~~~~~~~ 377 (380)
T PRK06225 364 EVFCEEFPDVVETL 377 (380)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998765
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=214.51 Aligned_cols=321 Identities=13% Similarity=0.163 Sum_probs=235.4
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC-CCCCeEEEcCCchHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~v~~~~sgteA~~~al~~ 113 (430)
.++|+.+| .+++| .+|.+.+++.+.++... .|+++...++.+.+++.++ ..++.|+.++|++|.+...+++
T Consensus 23 ~~i~LssN--enP~g-p~~~~~~~~~~~~~~~~-----rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~ 94 (356)
T COG0079 23 GIIKLSSN--ENPYG-PPPKVIEAIRAALDKLN-----RYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRA 94 (356)
T ss_pred cceeecCC--CCCCC-CCHHHHHHHHHHHHhhc-----cCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHH
Confidence 68999998 88998 56999999998887543 5677778899999999987 6778999999999999999999
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
.+. +++.|++..|+|.-+...+...+. +.+.++... +.. |++.+.+
T Consensus 95 ~~~--------~gd~vl~~~Ptf~~Y~~~a~~~g~-------------~~~~v~~~~-~~~------------d~~~~~~ 140 (356)
T COG0079 95 FVE--------PGDTVLIPEPTFSMYEIAAQLAGA-------------EVVKVPLKE-FRL------------DLDAILA 140 (356)
T ss_pred hhc--------CCCEEEEcCCChHHHHHHHHhcCC-------------eEEEecccc-ccc------------CHHHHHH
Confidence 886 568999999999877555444332 334444433 222 7888888
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---eee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 270 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~s 270 (430)
.+. +++.+|++.. +||++|.. .+.+.++++.+.|.+ +.++++||+|..|... .......-.++++ |||
T Consensus 141 ~~~---~~~~lv~i~n-PNNPTG~~-~~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~---~~~~l~~~~~nlivlRTfS 211 (356)
T COG0079 141 AIR---DKTKLVFLCN-PNNPTGTL-LPREELRALLEALPE-GGLVVIDEAYIEFSPE---SSLELLKYPPNLIVLRTFS 211 (356)
T ss_pred hhh---cCCCEEEEeC-CCCCCCCC-CCHHHHHHHHHhCCC-CcEEEEeCchhhcCCc---hhhhhccCCCCEEEEEecH
Confidence 886 3455555554 57777844 555667788887777 8999999999988651 1122222123344 799
Q ss_pred cccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHchh
Q psy14484 271 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 271 K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
|++|-.++|+|++++++++++.+.. ....|+.+.++.+++.++|+.-+ .....+.+.+.++++.+.|+.+
T Consensus 212 Ka~gLAGlRlGy~ia~~~~i~~l~~--------vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~- 282 (356)
T COG0079 212 KAFGLAGLRVGYAIANPELIAALNK--------VRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKAL- 282 (356)
T ss_pred HhhhcchhceeeccCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9877533899999999999999987 56788889999999998886321 1233445555566666666554
Q ss_pred cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC------CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 350 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 350 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~------~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+...-.+..++|+.+.+. . .+ +..+.+.|+++||+++.+. +++|+++. |+++.++++++|++
T Consensus 283 --~~~~v~pS~aNFvlv~~~-~-----~~-~~~l~~~L~~~giivR~~~~~~~~~~~lRitvg---t~een~~ll~AL~~ 350 (356)
T COG0079 283 --GLFGVFPSQANFVLVRVP-D-----AE-AAALAEALLKKGILVRDCSSVGLLPGYLRITVG---TPEENDRLLAALRE 350 (356)
T ss_pred --CCCeecCCCCcEEEEECC-C-----cc-HHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeC---CHHHHHHHHHHHHH
Confidence 311133555889888876 3 12 3579999999999999874 48999866 99999999999998
Q ss_pred HHHH
Q psy14484 424 TFNE 427 (430)
Q Consensus 424 ~l~~ 427 (430)
++..
T Consensus 351 ~~~~ 354 (356)
T COG0079 351 VLKG 354 (356)
T ss_pred HHhc
Confidence 8764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=218.84 Aligned_cols=347 Identities=15% Similarity=0.158 Sum_probs=226.9
Q ss_pred eeEEeecCCceeEE-EECCCCEEEecccccccccCCCC--CHHHHHHHHHHHhhcccc--c-c-CCCCCHHHHHHHHHHH
Q psy14484 15 LVIRSLKNSWKWSL-IDVSGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHV--M-L-SNLTHKPVIKLSEKLS 87 (430)
Q Consensus 15 ~~~~~~~~~~~~~~-~d~~g~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~--~-~-~~~~~~~~~~l~~~l~ 87 (430)
.++.+.....++++ ...+++++++|.|+ ++||.+ ++...+++.+++.+.+.. . + ..+.++...++++.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~n~~s~---~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA 156 (489)
T PLN02483 80 DVVERVSNDNNKTLKRTTKTRRCLNLGSY---NYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVA 156 (489)
T ss_pred EEEEeecCCCCceEEecCCCceEEEeecC---CccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHH
Confidence 44454443322233 34567899999985 788885 567788888888776432 1 1 1345788999999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+.++ . ++.+++++|+.++..++.++.. +++.|++.+++|+..... ....+ ..+..+
T Consensus 157 ~~~g-~-~~ai~~~~G~~an~~~i~al~~--------~Gd~Vi~d~~~h~s~~~~-~~~~G------------a~v~~~- 212 (489)
T PLN02483 157 RFVG-K-PAAIVFGMGYATNSTIIPALIG--------KGGLIISDSLNHNSIVNG-ARGSG------------ATIRVF- 212 (489)
T ss_pred HHhC-C-CcEEEECCHHHHHHHHHHHhCC--------CCCEEEEcchhhHHHHHH-HHHcC------------CeEEEE-
Confidence 9996 4 4445556688888877777654 566777766666554322 22222 122233
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhC----------CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKN----------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----------~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi 237 (430)
++ +|++++++.+++. +....+|++|+ +.++.|.+.+ +++|.++|++||+
T Consensus 213 -~~---------------~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~-v~s~~G~~~~----l~~I~~la~~~~~ 271 (489)
T PLN02483 213 -QH---------------NTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEG-IYSMEGELCK----LPEIVAVCKKYKA 271 (489)
T ss_pred -eC---------------CCHHHHHHHHHhhhhccccccccCCceEEEEECC-CCCCCCcccC----HHHHHHHHHHcCC
Confidence 32 1455666555431 11245888999 9999998887 9999999999999
Q ss_pred EEEEecccc-C-CCCcccccccccCCCC---Ccee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCC--
Q psy14484 238 HLIADEIAV-G-CGRTGKFFACEHAEIW---PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY-- 308 (430)
Q Consensus 238 ~li~DEv~~-g-~g~~g~~~~~~~~~~~---~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~-- 308 (430)
++|+||+|+ | +|++|.. ..+..++. .|++ +|||+++. ..|++++++++++.+.. ...+.++
T Consensus 272 ~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l~~------~~~~~~~~~ 341 (489)
T PLN02483 272 YVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGS---CGGYIAGSKELIQYLKR------TCPAHLYAT 341 (489)
T ss_pred EEEEECcCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhccc---CceEEEcCHHHHHHHHH------hCccccccC
Confidence 999999997 1 2334432 23444443 3666 89999974 23789999999988875 1122222
Q ss_pred CCCHHHHHHHHHHHHHHhhc-------CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHH
Q psy14484 309 SGNPLACCAALATLEIFNKD-------NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~-------~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
..++..+.++.++|+.+..+ +..++++++.+++++.|+++ ...... ...+.+..+.+. .. . ...
T Consensus 342 ~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~--~~~sp~~~l~l~-~~----~-~~~ 412 (489)
T PLN02483 342 SMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLG--DNDSPVMPIMLY-NP----A-KIP 412 (489)
T ss_pred CcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccC--CCCCCEEEEEEC-CH----H-HHH
Confidence 23556666677778765422 24567788888889988876 222111 112234444433 21 1 135
Q ss_pred HHHHHHHHCCcEEeec--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 382 KFFVAALKNELLLRPI--------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 382 ~~~~~l~~~Gv~~~~~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++.|+++||.+.+. ...+||+++..+|+|+|++++++|+++++.+
T Consensus 413 ~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 413 AFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred HHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999998842 1578999999999999999999999987643
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=218.50 Aligned_cols=327 Identities=11% Similarity=0.113 Sum_probs=216.7
Q ss_pred CCC-EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 32 SGK-RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 32 ~g~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
.|+ .++++..| .+.+| .+|++.+++.+.+.... .|+.....++++.+++.++.++++|++++|+++++..+
T Consensus 29 ~g~~~~~~l~~~--~~~~~-~~~~~~~a~~~~~~~~~-----~Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 29 RGRPFRARIGAN--ESGFG-PSPSVIAAMREAAAEIW-----KYGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred cCCcceeEecCC--CCCCC-CCHHHHHHHHHHHHHhh-----cCCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 344 45788776 45565 57889999988765422 12222356788888888877888999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++.. +++.|++.+|+|.++.......+ .....+++..+ . .|+++
T Consensus 101 ~~~~~~--------~gd~vlv~~p~y~~~~~~~~~~g-------------~~~~~vp~~~~--~-----------~~~~~ 146 (369)
T PRK08153 101 VRLYVE--------PGDPVVTSLGAYPTFNYHVAGFG-------------GRLVTVPYRDD--R-----------EDLDA 146 (369)
T ss_pred HHHhcC--------CCCEEEECCCcchHHHHHHHHcC-------------CeEEEeeCCCC--C-----------CCHHH
Confidence 887765 67889999999987643322211 12233333211 1 16777
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---ee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FL 267 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~ 267 (430)
+++.+. .++++++++.. ++|++|. ..+.+.++++.+.|++ ++++|+||+|..+...+....+. ...++ +-
T Consensus 147 l~~~~~--~~~~~~i~l~~-P~NPtG~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~~~~~~--~~~~~~i~~~ 219 (369)
T PRK08153 147 LLDAAR--RENAPLVYLAN-PDNPMGS-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGAAPPID--TDDPNVIRMR 219 (369)
T ss_pred HHHHhc--ccCCcEEEEeC-CCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCcccchhhh--hcCCCEEEEe
Confidence 766654 24556666655 6777784 5566778888888774 99999999999886544321111 12344 33
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 346 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 346 (430)
+|||.++ .| +|+|++++++++++.+.. ...+++.+++++.++.++|+ ++.+.+++++..+..++.+.
T Consensus 220 SfSK~~g~~G-lRiG~~v~~~~~~~~l~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~r~~~~ 287 (369)
T PRK08153 220 TFSKAYGLAG-ARVGYAIGAPGTIKAFDK--------VRNHFGMNRIAQAAALAALK---DQAYLAEVVGKIAAARDRIA 287 (369)
T ss_pred cchHhccCcc-hheeeeecCHHHHHHHHH--------hhcCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence 7999998 57 899999999999888765 22456778888888888875 33444444444444444433
Q ss_pred ch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe-ec----CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 347 SL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-PI----GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 347 ~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~-~~----~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+. ...+. ...+..|.++++.+. .+ ..++.++.+.|.++||.+. |+ .+++|+++. ++++++.++++
T Consensus 288 ~~L~~~g~-~~~p~~~~f~~~~~~-~~----~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~---~~~~~~~~~~a 358 (369)
T PRK08153 288 AIARANGL-TPLPSATNFVAIDCG-RD----GAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG---PDEELDLFAEA 358 (369)
T ss_pred HHHHHCCC-ccCCCcCcEEEEECC-CC----cccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHHH
Confidence 22 22222 223455666666553 21 1225789999999999995 42 258899865 89999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|++++..+
T Consensus 359 l~~~~~~~ 366 (369)
T PRK08153 359 LPEALEAA 366 (369)
T ss_pred HHHHHHHh
Confidence 99988643
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=218.97 Aligned_cols=316 Identities=12% Similarity=0.120 Sum_probs=213.5
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.+++||.+| .+++| .+|.+.+++.+.+.... .++.....++++.+++.++.++++|++|+|+++++..+++.
T Consensus 29 ~~~i~l~~n--~~~~~-~~~~v~~a~~~~~~~~~-----~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 29 EKIVKLASN--ENPYG-PSPKVKEAIAAHLDELA-----LYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CceEEecCC--CCCCC-CCHHHHHHHHHHHHHhh-----cCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHH
Confidence 378999887 45677 58899999998876533 23334456777888888877788999999999999988887
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+.. +++.|++.+|+|+++....... ..++..++.. .... |++++++
T Consensus 101 ~~~--------~gd~v~~~~p~y~~~~~~~~~~-------------g~~~~~~~~~-~~~~------------d~~~l~~ 146 (359)
T PRK03158 101 LLN--------PGTNTVMAEPTFSQYRHNAIIE-------------GAEVREVPLK-DGGH------------DLEAMLK 146 (359)
T ss_pred HhC--------CCCEEEEcCCCHHHHHHHHHHc-------------CCeEEEEecC-CCCc------------CHHHHHH
Confidence 754 5688999999998764332221 1222334332 1111 7788887
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-cccc---ccCCCCCceeee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFAC---EHAEIWPDFLCL 269 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~---~~~~~~~d~~~~ 269 (430)
.++ ++++++++.. ++|++|...+ .+.+.++.+.|+ +|+++|+||+|..+...+. .... +..+...-+.+|
T Consensus 147 ~~~---~~~~~v~i~~-p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 220 (359)
T PRK03158 147 AID---EQTKIVWICN-PNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTF 220 (359)
T ss_pred hcC---CCCCEEEEeC-CCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEec
Confidence 774 4566777666 7889996655 444555555553 6999999999987643321 1111 111111123389
Q ss_pred ecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH----HHHHHHHHHH
Q psy14484 270 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI----SQDMKKITKA 344 (430)
Q Consensus 270 sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~----~~~~~~l~~~ 344 (430)
||.++ .| +|+|++++++++++.+.. ...+++.+.+++.++.++|+ +.++.+++ ++..+++.+.
T Consensus 221 SK~~g~~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~ 288 (359)
T PRK03158 221 SKAYGLAA-LRVGYGIASEELIEKLNI--------ARPPFNTTRIAQYAAIAALE---DQAFLKECVEKNAEGLEQYYAF 288 (359)
T ss_pred hHhhcCcc-hhhehhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 46 899999999999888875 22356778888888888875 22333333 3344444444
Q ss_pred HHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 345 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 345 l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
|++. + +...++.|.++++.+. .+ ..++++.|.++||.+.|+ ++++||+++ ++++++.+++
T Consensus 289 l~~~---~-~~~~~~~g~~i~~~~~-~~-------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~ 353 (359)
T PRK03158 289 CKEY---G-LFYYPSQTNFIFVDTG-RD-------ANELFEALLKKGYIVRSGAALGFPTGVRITIG---LKEQNDKIIE 353 (359)
T ss_pred HHHC---C-CeeCCCcCcEEEEECC-CC-------HHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC---CHHHHHHHHH
Confidence 4432 2 2334556777776554 21 357889999999999985 368999865 8999999999
Q ss_pred HHHHH
Q psy14484 420 AIFQT 424 (430)
Q Consensus 420 ~l~~~ 424 (430)
+|+++
T Consensus 354 al~~~ 358 (359)
T PRK03158 354 LLKEL 358 (359)
T ss_pred HHHHh
Confidence 99875
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=216.48 Aligned_cols=325 Identities=14% Similarity=0.157 Sum_probs=217.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
++++++||.++ .+++| .+|.+++++.+.+.... .++.....++++.+++.++.++++|++++|+++++..++
T Consensus 30 ~~~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~-----~y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~ 101 (367)
T PRK02731 30 GIADIIKLASN--ENPLG-PSPKAIEAIRAAADELH-----RYPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLA 101 (367)
T ss_pred CCCceEEecCC--CCCCC-CCHHHHHHHHHHHHhhc-----CCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHH
Confidence 56789999987 56677 57889999998876432 233333457888888888777889999999999998887
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
..+.. +++.|++.+++|..+.......+ .....++.+ .+.. |++++
T Consensus 102 ~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~-~~~~------------~~~~l 147 (367)
T PRK02731 102 RAYLG--------PGDEVIYSEHGFAVYPIAAQAVG-------------AKPVEVPAK-DYGH------------DLDAM 147 (367)
T ss_pred HHhcC--------CCCEEEEecCCHHHHHHHHHHcC-------------CeEEEeccc-CCCC------------CHHHH
Confidence 76653 56789999999876543222211 122233321 1111 78889
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccCCCCCcee---
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPDFL--- 267 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~~~~~d~~--- 267 (430)
++.++ +++++|+++. ++|++|...+ .+.++++.+.|+ +|+++|+||+|..+.+.+. .......+..++++
T Consensus 148 ~~~~~---~~~~~v~l~~-p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (367)
T PRK02731 148 LAAVT---PRTRLVFIAN-PNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTR 221 (367)
T ss_pred HHHhC---CCCcEEEEeC-CCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence 88885 4567777777 8889995554 444555555554 5999999999986654332 11222222234444
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 345 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l 345 (430)
+|||.++ .| +|+|++++++++.+.+.. ...++..+.+++.++.+.++..+ .+...+.++++.+++.+.|
T Consensus 222 S~SK~~g~~G-~RiG~l~~~~~~~~~l~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L 292 (367)
T PRK02731 222 TFSKAYGLAG-LRVGYGIAPPEIIDALNR--------VRQPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFL 292 (367)
T ss_pred eehHhhcCcc-cceeeeeCCHHHHHHHHH--------ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999986 46 799999999999888765 22345667777777777765211 1223344455555555555
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
++. + +...++.|.++++.+. .... +.++++.|.++||.+.++ .+++|++++ ++++++.++++
T Consensus 293 ~~~---g-~~~~~~~g~~~~i~~~-~~~~-----~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~---~~~e~~~l~~a 359 (367)
T PRK02731 293 AEL---G-LEYIPSVGNFILVDFD-DGKD-----AAEAYQALLKRGVIVRPVAGYGLPNALRITIG---TEEENRRFLAA 359 (367)
T ss_pred HHC---C-CccCCCCceEEEEECC-CCCC-----HHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---CHHHHHHHHHH
Confidence 544 2 2222456888888774 3211 367899999999999886 268999865 78999999999
Q ss_pred HHHHHH
Q psy14484 421 IFQTFN 426 (430)
Q Consensus 421 l~~~l~ 426 (430)
|+++++
T Consensus 360 L~~~~~ 365 (367)
T PRK02731 360 LKEFLA 365 (367)
T ss_pred HHHHHh
Confidence 998875
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=209.93 Aligned_cols=326 Identities=19% Similarity=0.168 Sum_probs=217.9
Q ss_pred CEEEecccccccccCCCC-CHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~ 108 (430)
+.||.|+++ .+||+. ||+|.++++++++++.... ......+...++++.+++.++. +.++++++|++++.
T Consensus 1 ~~~~~~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~iv~~sg~~a~~ 75 (349)
T cd06454 1 KKVLNFCSN---DYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK--EAALVFSSGYAAND 75 (349)
T ss_pred CCceecccC---CccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC--CCEEEeccHHHHHH
Confidence 468899885 789996 9999999999998754321 1124567888999999999963 45677788899999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++.++. +++.|++.++.|.. ........+ .....++.. |.
T Consensus 76 ~~~~~~~~--------~gd~Vl~~~~~~~~-~~~~~~~~g------------~~~~~~~~~-----------------~~ 117 (349)
T cd06454 76 GVLSTLAG--------KGDLIISDSLNHAS-IIDGIRLSG------------AKKRIFKHN-----------------DM 117 (349)
T ss_pred HHHHHhcC--------CCCEEEEehhhhHH-HHHHHHHcC------------CceEEecCC-----------------CH
Confidence 88876653 56778876665433 222221111 122222211 56
Q ss_pred HHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc---ccc-ccccCCC
Q psy14484 189 FDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFF-ACEHAEI 262 (430)
Q Consensus 189 ~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g---~~~-~~~~~~~ 262 (430)
+.+++.+++. +.+++++++++ +++++|...+ +++|.++|+++|+++|+||+|. ++..+ ... .......
T Consensus 118 ~~le~~i~~~~~~~~~~~v~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~ 191 (349)
T cd06454 118 EDLEKLLREARRPYGKKLIVTEG-VYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTD 191 (349)
T ss_pred HHHHHHHHHhhccCCCeEEEEec-cccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccc
Confidence 7788888754 25678888998 9999997776 9999999999999999999986 33222 111 0111122
Q ss_pred CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHH
Q psy14484 263 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~ 339 (430)
..|++ +++|.++. +.|+++.++++++.+... ... ...+.+.++..++++.++++.+.+ ++..+++.++.+
T Consensus 192 ~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 264 (349)
T cd06454 192 DVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSY--ARG--FIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVR 264 (349)
T ss_pred cCcEEEeechhhhcc---cCCEEECCHHHHHHHHHh--chh--hhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35655 68898874 447788888887776541 111 112234567777788888887654 456677888888
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEeCCCCCCH
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNK 411 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~~~~~~t~ 411 (430)
++.+.|+++ ..+... .+.+.+..+... ++ . ...++.+.|.++||.+.+. ++.+|++++..+++
T Consensus 265 ~l~~~l~~~-g~~~~~--~~~~~~~~~~~~-~~---~--~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~ 335 (349)
T cd06454 265 YLRRGLKEL-GFPVGG--SPSHIIPPLIGD-DP---A--KAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTK 335 (349)
T ss_pred HHHHHHHhc-CCcccC--CCCCcEEEEeCC-Ch---H--HHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCH
Confidence 888888765 222211 112222222222 11 1 1467999999999998752 36899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQT 424 (430)
Q Consensus 412 e~i~~~~~~l~~~ 424 (430)
+++++++++|+++
T Consensus 336 ~~i~~~~~~l~~~ 348 (349)
T cd06454 336 EDIDRLLEALKEV 348 (349)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=210.57 Aligned_cols=335 Identities=13% Similarity=0.062 Sum_probs=221.8
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al 111 (430)
.+++|..|. ..++ .++.+.+++.+.+..... +....+..++++.+++.+.+.++ ..+++|++++|+++|+..++
T Consensus 25 ~~i~l~~g~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~ 101 (382)
T PRK06108 25 GVLPLWFGE--SDLP-TPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAA 101 (382)
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHH
Confidence 578887763 3344 368899999988765321 22223445677788888877665 67789999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC-CCCCCCChhHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARCAIFD 190 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 190 (430)
+.++. +++.|++.+|+|..+....... ......++..... .. ..|+++
T Consensus 102 ~~l~~--------~gd~vl~~~p~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~~----------~~d~~~ 150 (382)
T PRK06108 102 QALVG--------PGDEVVAVTPLWPNLVAAPKIL-------------GARVVCVPLDFGGGGW----------TLDLDR 150 (382)
T ss_pred HHhcC--------CCCEEEEeCCCccchHHHHHHC-------------CCEEEEeeCCCCCCCc----------cCCHHH
Confidence 87764 5678999999997664332221 1222333332110 00 017888
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc-cccc-c-cccCCCCCc--
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKFF-A-CEHAEIWPD-- 265 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~-g~~~-~-~~~~~~~~d-- 265 (430)
+++.++ +++++++++. ++|++|. ..+.+.+++|.++|+++|+++|+||+|.++... +... . .......+.
T Consensus 151 l~~~~~---~~~~~i~l~~-p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i 225 (382)
T PRK06108 151 LLAAIT---PRTRALFINS-PNNPTGW-TASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRII 225 (382)
T ss_pred HHHhcC---ccceEEEEEC-CCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEE
Confidence 888875 3567777777 8888884 467888999999999999999999999987543 2111 1 111111122
Q ss_pred -eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 266 -~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+.+|||.++. | +|+|++++++++++.+.. .....+.+.+++.+.++.++|+... -++..++++++.+++
T Consensus 226 ~~~S~SK~~g~~G-~RiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (382)
T PRK06108 226 FVNSFSKNWAMTG-WRLGWLVAPPALGQVLEK------LIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHL 298 (382)
T ss_pred EEeechhhccCcc-cceeeeeCCHHHHHHHHH------HHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3379999864 6 899999999998887765 2223345567777777777775311 123445566666666
Q ss_pred HHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCHH
Q psy14484 342 TKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKN 412 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~e 412 (430)
.+.|+++ +.+....++|. ++++.+. ... . ...+++.|+ ++||.+.|+ .+++|++++. +++
T Consensus 299 ~~~L~~~---~~~~~~~p~~g~~~~~~l~-~~~--~---~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~ 367 (382)
T PRK06108 299 VDALRAL---PGVEVAKPDGAMYAFFRIP-GVT--D---SLALAKRLVDEAGLGLAPGTAFGPGGEGFLRWCFAR--DPA 367 (382)
T ss_pred HHHHHhC---CCCcccCCCeeEEEEEeCC-CCC--C---HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--CHH
Confidence 6666554 33333334444 4455554 321 1 356888875 579999774 3689998886 899
Q ss_pred HHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFN 426 (430)
Q Consensus 413 ~i~~~~~~l~~~l~ 426 (430)
++++++++|++++.
T Consensus 368 ~l~~~l~~l~~~l~ 381 (382)
T PRK06108 368 RLDEAVERLRRFLA 381 (382)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998774
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=210.14 Aligned_cols=335 Identities=11% Similarity=0.098 Sum_probs=222.5
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~ 109 (430)
..++||..|.. .+. .+|.+.+++.+.+.+. ..+....+..++++.+++.+.+..+ .+++ +|++|+|+++|+..
T Consensus 54 ~~~i~l~~G~P--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~ 130 (413)
T PLN00175 54 HGAINLGQGFP--NFD-GPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAA 130 (413)
T ss_pred CCeEecCCCCC--CCC-CCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHH
Confidence 45788887743 232 3678889998887652 1222223344666777777776554 3555 69999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAI 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 188 (430)
++..... +++.|++.+|+|..+.......+ .....++... .+.. |+
T Consensus 131 ~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~------------~~ 177 (413)
T PLN00175 131 TILGLIN--------PGDEVILFAPFYDSYEATLSMAG-------------AKIKTVTLRPPDFAV------------PE 177 (413)
T ss_pred HHHHhCC--------CCCEEEEeCCCchhHHHHHHHcC-------------CEEEEEECCcccCCC------------CH
Confidence 9887654 67889999999987643333222 2223343321 1111 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCc--
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPD-- 265 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d-- 265 (430)
++|++.+. .+++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.... .+..+....
T Consensus 178 ~~l~~~~~---~~~k~i~i~~-p~NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi 252 (413)
T PLN00175 178 DELKAAFT---SKTRAILINT-PHNPTG-KMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTV 252 (413)
T ss_pred HHHHHhcC---cCceEEEecC-CCCCCC-cCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEE
Confidence 88988885 4577888877 889999 566788999999999999999999999997754432211 122222222
Q ss_pred -eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 266 -~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+-+|||.++ .| +|+|++++++++++.+.. .....+++.+.+.+.++.++|+..+ -++..+.++++.+.+
T Consensus 253 ~i~SfSK~~~~~G-~RiG~~v~~~~l~~~l~~------~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l 325 (413)
T PLN00175 253 TMNSLGKTFSLTG-WKIGWAIAPPHLTWGVRQ------AHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDIL 325 (413)
T ss_pred EEecchhhccCcc-hheeeeEeCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 337999998 57 899999999999887765 2233456778888888877775211 123345556666666
Q ss_pred HHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec----------CCEEEEeCCCCC
Q psy14484 342 TKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI----------GNTVYLMPPYIL 409 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~----------~~~lR~~~~~~~ 409 (430)
.+.|++. + +....+.|.+ +++.+. ...... ..++++.|+ ++||.+.|+ .+++|++++ .
T Consensus 326 ~~~L~~~---g-~~~~~p~g~~f~~~~~~-~~~~~~---~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~--~ 395 (413)
T PLN00175 326 VEGLKEV---G-FKVYPSSGTYFVMVDHT-PFGFEN---DIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFC--K 395 (413)
T ss_pred HHHHHHC---C-CeecCCCeeEEEEEecc-ccCCCC---HHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEc--C
Confidence 6666653 2 2233455555 444443 211111 257888876 569998874 147898766 5
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~ 426 (430)
+++++++++++|++.++
T Consensus 396 ~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 396 DEETLRAAVERMKTKLK 412 (413)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 89999999999998875
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.1e-25 Score=211.55 Aligned_cols=335 Identities=12% Similarity=0.100 Sum_probs=219.9
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVA 110 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~a 110 (430)
..++|..+ ...++ .++.+.+++.+.+... ..+....+..++++++++.+.+.++ ..++ +|++|+|+++|+..+
T Consensus 21 ~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 97 (378)
T PRK07682 21 GVISLGVG--EPDFV-TPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVA 97 (378)
T ss_pred CeEEeCCC--CCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH
Confidence 46777766 33454 4567888888876542 1122223444666777777776543 3454 799999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAI 188 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~ 188 (430)
++.++. +++.|++.+++|+.+.......+. ....++.+ +.+.. |+
T Consensus 98 ~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------------d~ 144 (378)
T PRK07682 98 MRAIIN--------PGDEVLIVEPSFVSYAPLVTLAGG-------------VPVPVATTLENEFKV------------QP 144 (378)
T ss_pred HHHhCC--------CCCEEEEeCCCchhhHHHHHHcCC-------------EEEEeecCCccCCCC------------CH
Confidence 987764 678999999999876443333222 11222221 11111 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-ccCCCCCc--
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPD-- 265 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~~~~~d-- 265 (430)
+++++++. ++++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..+.+.+....+ ...+..+.
T Consensus 145 ~~l~~~~~---~~~~~v~~~~-p~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i 219 (378)
T PRK07682 145 AQIEAAIT---AKTKAILLCS-PNNPTG-AVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTI 219 (378)
T ss_pred HHHHhhcC---cccEEEEEEC-CCCCcC-cCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEE
Confidence 89988875 3567776666 778888 4667888999999999999999999999988655432111 11122222
Q ss_pred -eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 266 -~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+.+|||.++ .| +|+|++++++++++.+.. .....+++.+.+++.++.++|+..+ .....+.++++.+.+
T Consensus 220 ~~~S~SK~~~~~G-lR~G~~~~~~~~i~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 292 (378)
T PRK07682 220 LISGFSKGFAMTG-WRLGFIAAPVYFSEAMLK------IHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFF 292 (378)
T ss_pred EEecCcccccChh-hhhhhhhcCHHHHHHHHH------HHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 447999997 57 899999999999888765 1223345667788877777775211 122344556666667
Q ss_pred HHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKN 412 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~e 412 (430)
.+.|+++ . +....+.|.++.+ .+. .... . +..+++.++ ++||.+.|+ .+++|++++ .+++
T Consensus 293 ~~~L~~~---~-~~~~~p~g~~~~~~~~~-~~~~-~---~~~~~~~ll~~~gv~v~pg~~f~~~~~~~iRis~~--~~~~ 361 (378)
T PRK07682 293 VTSFNEI---G-LTCHVPGGAFYAFPSIS-STGL-S---SEEFAEQLLLEEKVAVVPGSVFGESGEGFIRCSYA--TSLE 361 (378)
T ss_pred HHHHHHC---C-CccCCCCeeEEEEEecc-CCCC-C---HHHHHHHHHHhCCEEEcCchhhCcCCCCeEEEEeC--CCHH
Confidence 7777654 2 2223455555544 342 2111 1 356888875 679999874 368999766 4789
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14484 413 EIQHMTSAIFQTFNEV 428 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~~ 428 (430)
++++++++|++++.++
T Consensus 362 ~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 362 QLQEAMKRMKRFVENK 377 (378)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988753
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=211.69 Aligned_cols=320 Identities=14% Similarity=0.130 Sum_probs=211.4
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEE-cCCchHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEV 109 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~-~~sgteA~~~ 109 (430)
.++++++||.+| .+++| .+|++++++.+.+.... .++.....++++.+++.++.+++++++ ++|+++++..
T Consensus 31 ~~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~-----~y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 31 IDPESIIKLGSN--ENPLG-PSPKAVEAIEKELSKIH-----RYPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDT 102 (361)
T ss_pred CCccceEEccCC--CCCCC-CCHHHHHHHHHHHHhhc-----CCCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHH
Confidence 356789999887 45677 67899999888766432 233333478888899888877889999 6777888888
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++++.. +++.|++.+++|..+....... ......++.+.++.. |++
T Consensus 103 ~~~~~~~--------~gd~vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~------------~~~ 149 (361)
T PRK00950 103 LMRTFID--------PGDEVIIPTPTFSYYEISAKAH-------------GAKPVYAKREEDFSL------------DVD 149 (361)
T ss_pred HHHHhcC--------CCCEEEEcCCChHHHHHHHHHc-------------CCEEEEeecCCCCCc------------CHH
Confidence 8887653 5678999899887653322221 122233332222222 788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCceee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLC 268 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d~~~ 268 (430)
++++.+. ++++++++.. ++|++|.+.+ .+++.++|+++|+++|+||+|.+|. .+.... ....+....+.+
T Consensus 150 ~l~~~~~---~~~~~v~~~~-p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S 220 (361)
T PRK00950 150 SVLNAIT---EKTKVIFLCT-PNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRT 220 (361)
T ss_pred HHHHHhc---cCCCEEEEeC-CCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEe
Confidence 8888875 3566666666 7888998877 7788899999999999999998774 111111 111111122348
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS 347 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 347 (430)
|||.++ .| +|+|++++++++++.+.. ...++..+++++.++.++++ ..++.++..+..+..++.+.+
T Consensus 221 ~SK~~g~~G-lRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~ 288 (361)
T PRK00950 221 FSKVFGLAG-LRIGYGFVPEWLIDYYMR--------AKTPFSLTRLSQAAAIAALS---DKEYIEKSIEHGIKSREYLYN 288 (361)
T ss_pred ehHhhcCch-hhcchhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHh
Confidence 999998 46 899999999999887765 23345566777777766664 233444443333344444432
Q ss_pred hhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 348 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 348 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
. +. +...+..|.++++.+. .. . +.++++.|.++||.+.++ .+++|++++ +++++++++++
T Consensus 289 ~--l~-~~~~~~~~~~i~~~~~-~~---~---~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~---~~~~~~~l~~~ 355 (361)
T PRK00950 289 E--LP-FKVYPSEANFVLVDVT-PM---T---AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG---TFEENERFLEI 355 (361)
T ss_pred h--cC-eeECCCcceEEEEECC-CC---C---HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC---CHHHHHHHHHH
Confidence 1 11 1122345666666554 21 1 367999999999999874 257999866 88899999999
Q ss_pred HHHHH
Q psy14484 421 IFQTF 425 (430)
Q Consensus 421 l~~~l 425 (430)
|++++
T Consensus 356 L~~il 360 (361)
T PRK00950 356 LKEIV 360 (361)
T ss_pred HHHHh
Confidence 98865
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=207.69 Aligned_cols=338 Identities=10% Similarity=0.064 Sum_probs=218.6
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCC-CeEEEcCCchHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAVE 108 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~v~~~~sgteA~~ 108 (430)
+..+||..|.. .+++ .+|.+.+++.+.+..... +....+..++++.+++++.+.++ ..+ ++|++|+|+++++.
T Consensus 39 ~~~i~l~~g~~-~~~~-p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 39 GRPVDFSHGDV-DAHE-PTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCceecCCcCC-CCCC-CCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 56678776532 2232 567888888887754321 22223445677888888888765 455 78999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-----CCCCCCCCCChhHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-----DSRNINKGNSANEI 183 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 183 (430)
.++++++. +++.|++.+|+|.++.......+. ....++.. ..+..
T Consensus 117 ~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~~~~~~~~--------- 166 (405)
T PRK06207 117 LAVAATVA--------RGDKVAIVQPDYFANRKLVEFFEG-------------EMVPVQLDYLSADKRAGL--------- 166 (405)
T ss_pred HHHHHhcC--------CCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEeccccCcccCCCc---------
Confidence 99998765 678999999999887543333221 12222221 11111
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCC
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEI 262 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~ 262 (430)
|+++|++++++ +++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+... .+.....
T Consensus 167 ---d~~~l~~~~~~---~~k~v~l~~-P~NPTG-~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ 238 (405)
T PRK06207 167 ---DLDQLEEAFKA---GVRVFLFSN-PNNPAG-VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPI 238 (405)
T ss_pred ---CHHHHHHhhhh---cCeEEEECC-CCCCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCC
Confidence 78899988863 456666665 678888 55677889999999999999999999999875544321 1111122
Q ss_pred CC-c---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHH
Q psy14484 263 WP-D---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRIS 335 (430)
Q Consensus 263 ~~-d---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~ 335 (430)
.+ . +.+|||.++ .| +|+|++++++++++.+.. .......+.+.+.+.++.++|+.-. -+...+..+
T Consensus 239 ~~~~vi~i~SfSK~~~lpG-lRiG~ii~~~~l~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 311 (405)
T PRK06207 239 DPENVITIMGPSKTESLSG-YRLGVAFGSPAIIDRMEK------LQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQ 311 (405)
T ss_pred CcCcEEEEecchhhccCcc-cceEEEEcCHHHHHHHHH------HHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 22 2 337899987 57 899999999999888765 1122233445566666666664200 012233334
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPP 406 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~ 406 (430)
+..+.+.+.|+. .+.+....+. |.++++.+. .... . +..+++.|+ ++||.+.|+ ++++|++++
T Consensus 312 ~~r~~l~~~L~~---~~~~~~~~p~gg~fl~~~l~-~~~~-~---~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris~~ 383 (405)
T PRK06207 312 AIRDDLLRVLRG---VEGVFVRAPQAGSYLFPRLP-RLAV-S---LHDFVKILRLQAGVIVTPGTEFSPHTADSIRLNFS 383 (405)
T ss_pred HHHHHHHHHHhc---CCCceecCCCeeEEEEEeCc-ccCC-C---HHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEEec
Confidence 444444444443 3333333343 566767665 3111 1 356888886 679999985 258999776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++++++.+++|.+++++.
T Consensus 384 --~~~~~l~~al~rl~~~l~~~ 403 (405)
T PRK06207 384 --QDHAAAVAAAERIAQLIERY 403 (405)
T ss_pred --CCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999988764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=208.81 Aligned_cols=330 Identities=10% Similarity=0.071 Sum_probs=211.4
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhc----CCCCCeEEEcCCchHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT----QYKLGHCFYGSDGASAV 107 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~----~~~~~~v~~~~sgteA~ 107 (430)
.+++|+.+| .++++ .+|.+.+++.+.+..... .+...+..++++.+++.+.+.. .+++++|++|+|+++++
T Consensus 28 ~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al 104 (374)
T PRK02610 28 IQLDRLDTN--EFPYD-LPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELI 104 (374)
T ss_pred cceeEecCC--CCCCC-CCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHH
Confidence 358888877 45555 568999999987665211 1111122234444554444332 15778999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARC 186 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 186 (430)
..++.+... ++++.|++.+|+|.++.......+. ++..++... .+..
T Consensus 105 ~~~~~~~~~-------~g~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~------------ 152 (374)
T PRK02610 105 RSLLIATCL-------GGEGSILVAEPTFSMYGILAQTLGI-------------PVVRVGRDPETFEI------------ 152 (374)
T ss_pred HHHHHHHcC-------CCCCeEEEcCCChHHHHHHHHHcCC-------------EEEEecCCcccCCC------------
Confidence 887776543 1445799999999877544333221 222333221 1222
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|+++|++++++. ..+++++++.+ ++|++| ...+.+.+++|.++| +++++|+||+|..|.......... ..++
T Consensus 153 d~~~l~~~~~~~~~~~~k~i~l~~-P~NPTG-~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~---~~~~ 225 (374)
T PRK02610 153 DLAAAQSAIEQTQNPPVRVVFVVH-PNSPTG-NPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELA---QHPN 225 (374)
T ss_pred CHHHHHHHHHhhcCCCceEEEEeC-CCCCCC-CCCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHh---cCCC
Confidence 789999888642 14678887777 889999 555677788888877 389999999998774221111111 1123
Q ss_pred ---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHH---H
Q psy14484 266 ---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQD---M 338 (430)
Q Consensus 266 ---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~---~ 338 (430)
+-+|||.++ .| +|+|++++++++++.+.. ....++.+.+++.++..+|+.. +.+.+.+++. .
T Consensus 226 ~ivi~SfSK~~g~~G-lRiG~~v~~~~l~~~l~~--------~~~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~r 294 (374)
T PRK02610 226 WVILRTFSKAFRLAA-HRVGYAIGHPELIAVLEK--------VRLPYNLPSFSQLAAQLALEHR--QELLAAIPEILQER 294 (374)
T ss_pred EEEEEecchhccCcc-cceeeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHH
Confidence 347999996 46 899999999999888775 1233555777777777666521 2233333222 3
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHH
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~ 418 (430)
+.+.+.|+. ++.+...+..|.++++.+. ... . +..+++.|.++||.+.+..+++|+++. +++++++++
T Consensus 295 ~~l~~~L~~---~~~~~~~p~~g~f~~~~l~-~~~--~---~~~~~~~l~~~gi~v~~~~~~lRls~~---~~~~~~~~l 362 (374)
T PRK02610 295 DRLYQALQE---LPQLRVWPSAANFLYLRLS-QDA--A---LAALHQALKAQGTLVRHTGGGLRITIG---TPEENQRTL 362 (374)
T ss_pred HHHHHHHHh---CCCcEeCCCcceEEEEeCC-CCC--C---HHHHHHHHHHCCEEEEeCCCeEEEeCC---CHHHHHHHH
Confidence 334444433 3333333455777776665 321 1 367888899999999888889999865 567899999
Q ss_pred HHHHHHHHHh
Q psy14484 419 SAIFQTFNEV 428 (430)
Q Consensus 419 ~~l~~~l~~~ 428 (430)
++|++++..+
T Consensus 363 ~~l~~~l~~~ 372 (374)
T PRK02610 363 ERLQAALTQL 372 (374)
T ss_pred HHHHHHHhhc
Confidence 9999988765
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=209.00 Aligned_cols=321 Identities=11% Similarity=0.125 Sum_probs=211.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
++.+++||..| .+.++ .+|++.+++.+.+.... .|+.....+|++.+++.++.++++|++|+|+++++..++
T Consensus 28 ~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~-----~Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~ 99 (357)
T PRK14809 28 DPDDLVKLSSN--ENPHG-PSPAAVEAIREAAERVH-----SYPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLA 99 (357)
T ss_pred CccceeEecCC--CCCCC-CCHHHHHHHHHHHhhhh-----cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 46689999887 56666 57889999888765422 233333557888888888888999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+++.. +++.|++.+|+|..+.......+ .....++.+...... .+++++
T Consensus 100 ~~~~~--------~gd~V~v~~P~y~~~~~~~~~~g-------------~~~~~~~l~~~~~~~----------~~~~~~ 148 (357)
T PRK14809 100 RAMLD--------PGDTVLVPDPGFAYYGMSARYHH-------------GEVREYPVSKADDFE----------QTADTV 148 (357)
T ss_pred HHhcC--------CCCEEEEeCCChHHHHHHHHHcC-------------CeEEEEecccCcCCC----------cCHHHH
Confidence 88765 66889999999875533222111 122333332110000 145665
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCceeeee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLCLS 270 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d~~~~s 270 (430)
++... +++++++.. ++|++| ...+.+.+++|.+.|++ ++++|+||+|..|...+.... .+..+....+.+||
T Consensus 149 ~~~~~----~~k~i~l~~-p~NPTG-~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfS 221 (357)
T PRK14809 149 LDAYD----GERIVYLTS-PHNPTG-SEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFS 221 (357)
T ss_pred HHhhc----CCcEEEEeC-CCCCCC-cCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecch
Confidence 55442 345566666 788999 55566678888888875 789999999998754433211 11111122344799
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc-h
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS-L 348 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-l 348 (430)
|.++ .| +|+|++++++++++.+.. ...+++.+.+++.++.++|. ++++.+..++..+..++.+.+ +
T Consensus 222 K~~~~~G-lRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~---~~~~~~~~~~~~~~~r~~l~~~L 289 (357)
T PRK14809 222 KAYGLAG-LRLGYAVVPEEWADAYAR--------VNTPFAASELACRAGLAALD---DDEHVERTVETARWAREYIREEL 289 (357)
T ss_pred hHhcCcc-hhheeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHh
Confidence 9997 57 899999999999888875 23466778888777777664 233333333333333333322 2
Q ss_pred hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-----~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
... ..+..|+++++.+. + ..++++.|.++||.+.++. +++|+++. +++++++++++|++
T Consensus 290 ~~~----~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~---~~~~~~~~l~~L~~ 353 (357)
T PRK14809 290 DAP----TWESAGNFVLAEVG-D--------ASAVAEAAQERGVIVRDCTSFGLPECIRITCG---TREETERAVEVLNE 353 (357)
T ss_pred cCc----cCCCCCCEEEEECC-C--------HHHHHHHHHHCCEEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHH
Confidence 211 12456778777654 2 2568888999999999862 68999754 68899999999998
Q ss_pred HHH
Q psy14484 424 TFN 426 (430)
Q Consensus 424 ~l~ 426 (430)
+++
T Consensus 354 ~l~ 356 (357)
T PRK14809 354 VLA 356 (357)
T ss_pred Hhc
Confidence 764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=210.78 Aligned_cols=317 Identities=15% Similarity=0.202 Sum_probs=211.2
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.++|||.+| .+.++ .+|++++++.+++.... .+......++++.+++.++.+++++++++|+++++..+++.
T Consensus 19 ~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~-----~y~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 19 KEVIKLNSN--ENPFG-PPPKAKEALRAEADKLH-----RYPDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRA 90 (346)
T ss_pred CceEEccCC--CCCCC-CCHHHHHHHHHhHHHhh-----cCCCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHH
Confidence 479999887 45666 57899999998765432 22222236788888888877788999999999999888887
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+.. +++.|++.+++|..+...... ...+...++...... .|++++++
T Consensus 91 l~~--------~gd~v~~~~p~y~~~~~~~~~-------------~g~~~~~~~~~~~~~------------~d~~~l~~ 137 (346)
T TIGR01141 91 FLE--------PGDAVLVPPPTYSMYEISAKI-------------HGAEVVKVPLDEDGQ------------LDLEDILV 137 (346)
T ss_pred hcC--------CCCEEEEcCCCHHHHHHHHHH-------------cCCeEEEeccCCCCC------------CCHHHHHH
Confidence 653 567899999888543221111 112223343332211 17888888
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---eee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 270 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~s 270 (430)
.+. +++++++++. ++|++|...+ .+.+.++.+.|+ +++++|+||+|.++...+... ......++++ ++|
T Consensus 138 ~~~---~~~~~v~l~~-p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~--~~~~~~~~~i~~~S~s 209 (346)
T TIGR01141 138 AID---DKPKLVFLCS-PNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTL--PLLAEYPNLIVLRTLS 209 (346)
T ss_pred hcC---CCCCEEEEeC-CCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCccHH--HHHhhCCCEEEEehhh
Confidence 763 4677777777 8888996655 444444444444 499999999998765432211 1111223433 688
Q ss_pred cccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHch
Q psy14484 271 KGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 271 K~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l 348 (430)
|.++. | +|+|++++++++.+.+.. ...+++.+++++.++.+.++... .....++++++.+++.+.|+++
T Consensus 210 K~~g~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 280 (346)
T TIGR01141 210 KAFGLAG-LRIGYAIANAEIIDALNK--------VRAPFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL 280 (346)
T ss_pred Hhhhchh-hhceeeecCHHHHHHHHh--------ccCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99964 6 799999999999888765 22356667888887777765322 1234455566666666666544
Q ss_pred hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+++...+..|.++++++. . . +.++.+.|.++||.+.++ .+.+|++++ ++++++++++.|+
T Consensus 281 ---~g~~~~~~~g~~~~~~~~-~----~---~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 281 ---PGLEVYPSDANFVLIRFP-R----D---ADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred ---CCCEECCCcCCEEEEecC-C----C---HHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 333323445777777765 3 1 367899999999999885 368999865 8999999998763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=209.64 Aligned_cols=337 Identities=14% Similarity=0.122 Sum_probs=214.4
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC-CCCCeEEEcCCchHH
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-YKLGHCFYGSDGASA 106 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~v~~~~sgteA 106 (430)
-++..|..++++..+ ...+. .++.+ +++.+++......+ .......++++.+++.+. .++++|++|+|+++|
T Consensus 20 ~~~~~~~~~~~~~~~--e~~~~-~~~~~-~~~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~a 92 (373)
T PRK07324 20 TYDIAESCIDSLTLE--ELLAL-AGKNP-EAFYQELGQKKLTY---GWIEGSPEFKEAVASLYQNVKPENILQTNGATGA 92 (373)
T ss_pred ccccccCCCCCCcHH--HHHhc-cCcch-HHHHHHHhcCCccC---CCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHH
Confidence 356666677776554 22222 45566 77777766532211 111223355566666543 467899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++..++. +++.|++..|+|..+.......+ .+.+.++........ .
T Consensus 93 l~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~g-------------~~v~~v~~~~~~~~~----------~ 141 (373)
T PRK07324 93 NFLVLYALVE--------PGDHVISVYPTYQQLYDIPESLG-------------AEVDYWQLKEENGWL----------P 141 (373)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecccccCCC----------C
Confidence 9999988764 56789999999976643322222 122334332111100 1
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d 265 (430)
|++++++.+. ++++++++.. ++|++| ...+++.+++|.++|++||+++|+||+|.++...+.... .+..+....
T Consensus 142 d~~~l~~~~~---~~~kli~i~~-p~NPtG-~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~ 216 (373)
T PRK07324 142 DLDELRRLVR---PNTKLICINN-ANNPTG-ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGIS 216 (373)
T ss_pred CHHHHHHhCC---CCCcEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEE
Confidence 7788888774 4677888877 888998 566788899999999999999999999998755432111 111111122
Q ss_pred eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHH----HHHHHHH
Q psy14484 266 FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR----ISQDMKK 340 (430)
Q Consensus 266 ~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~----~~~~~~~ 340 (430)
+-+|||.++ .| +|+|++++++++++.+.. .....+++.+.++..++..+|+. .+.+.++ ++++.+.
T Consensus 217 ~~s~SK~~~~~G-~RiG~i~~~~~li~~~~~------~~~~~~~~~~~~~q~~a~~~l~~--~~~~l~~~~~~~~~~~~~ 287 (373)
T PRK07324 217 TNSMSKTYSLPG-IRVGWIAANEEVIDILRK------YRDYTMICAGVFDDMLASLALEH--RDAILERNRKIVRTNLAI 287 (373)
T ss_pred EecchhhcCCcc-ceeEEEecCHHHHHHHHH------HhCcEEecCChHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHH
Confidence 447999987 46 899999999999888775 33344566777777777766642 1223333 3333334
Q ss_pred HHHHHHchhcCCCeeeEeecceEE-EEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHH
Q psy14484 341 ITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNE 413 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~ 413 (430)
+.+.|+ ..+.+..+.+.|.++ ++.+. .. . . ..+++++|+ ++||.+.|+ .+++|++.+ .+++.
T Consensus 288 l~~~l~---~~~~~~~~~p~gg~~~~i~~~-~~-~--~--~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~--~~~~~ 356 (373)
T PRK07324 288 LDEWVA---KEPRVSYVKPKAVSTSFVKLD-VD-M--P--SEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYC--CDTET 356 (373)
T ss_pred HHHHHh---cCCCceEECCCceEEEEEEeC-CC-C--C--HHHHHHHHHHhcCEEEECccccCCCCeEEEEec--CCHHH
Confidence 444443 334444455555543 34443 21 1 1 356888865 679999986 268899654 57899
Q ss_pred HHHHHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQTFNE 427 (430)
Q Consensus 414 i~~~~~~l~~~l~~ 427 (430)
+.+.+++|++++.+
T Consensus 357 l~~~l~rl~~~l~~ 370 (373)
T PRK07324 357 LKKGLKKLSEFLRE 370 (373)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.9e-24 Score=206.78 Aligned_cols=334 Identities=11% Similarity=0.048 Sum_probs=218.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcC--CCC-CeEEEcCCchHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAV 107 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~-~~v~~~~sgteA~ 107 (430)
.+..++||..| ...++ .++.+.+++.+.+.....+ +...+..++++.+++.+.+..+ .++ ++|++|+|+++|+
T Consensus 30 ~~~~~i~l~~g--~p~~~-~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al 106 (399)
T PRK07681 30 AGHKMIDLSIG--NPDMP-PADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGL 106 (399)
T ss_pred cCCCeEEeCCC--CCCCC-CCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHH
Confidence 46688999887 34454 4678888888876543222 1123344566777777765543 466 7899999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++++++. +++.|++.+|+|.++.......+. ....++.+..... ..|
T Consensus 107 ~~~~~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~----------~~d 155 (399)
T PRK07681 107 VHLPMVYAN--------PGDIILVPDPGYTAYETGIQMAGA-------------TSYYMPLKKENDF----------LPD 155 (399)
T ss_pred HHHHHHhCC--------CCCEEEECCCCccchHHHHHhcCC-------------EEEEEecCCCCCC----------cCC
Confidence 999887765 668899999999887554433222 2233333211110 016
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccCC---C
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHAE---I 262 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~~---~ 262 (430)
++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+... . .+..+ .
T Consensus 156 ~~~l~~~~~---~~~k~v~l~~-P~NPTG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~ 230 (399)
T PRK07681 156 LELIPEEIA---DKAKMMILNF-PGNPVP-AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEV 230 (399)
T ss_pred HHHHHHhcc---ccceEEEEeC-CCCCcC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCccc
Confidence 788887774 3567777765 678888 56678889999999999999999999999775433211 1 11111 1
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
...+-+|||.++ .| +|+|++++++++++.+.. ......++.+.+++.++.++|+... -+...+.++++.+
T Consensus 231 ~i~~~S~SK~~~~~G-lRiG~~i~~~~l~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 303 (399)
T PRK07681 231 GVEINSLSKSYSLAG-SRIGYMIGNEEIVRALTQ------FKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRD 303 (399)
T ss_pred EEEEeecccccCCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 122447999997 57 899999999999888765 2223355667777777777765211 0122334455555
Q ss_pred HHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCCC
Q psy14484 340 KITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILN 410 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~t 410 (430)
.+.+.|++. + +... +..|.++++.+. ... . +.++++.+++ +||.+.|+ .+++|++++ .+
T Consensus 304 ~l~~~L~~~---g-~~~~~p~~g~f~~~~l~-~~~---~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~~ 371 (399)
T PRK07681 304 TLVDGFRTF---G-WNVDKPAGSMFVWAEIP-KGW---T--SLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALV--QD 371 (399)
T ss_pred HHHHHHHHC---C-CcccCCCeeeEEEEECC-CCC---C--HHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEec--CC
Confidence 555555543 2 2222 233666666665 321 1 3568888877 89999874 257899766 57
Q ss_pred HHHHHHHHHHHHH
Q psy14484 411 KNEIQHMTSAIFQ 423 (430)
Q Consensus 411 ~e~i~~~~~~l~~ 423 (430)
++++++++++|++
T Consensus 372 ~~~~~~~l~~l~~ 384 (399)
T PRK07681 372 EEVLQQAVENIRN 384 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 8999999999987
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=204.22 Aligned_cols=320 Identities=12% Similarity=0.117 Sum_probs=212.4
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
..+|+..| .+.++ .+|.+.+++.+.+.... ...+..+...++++.+++.++..+++|++++|+++++..+++++
T Consensus 23 ~~~~l~~~--~~~~~-~p~~~~~a~~~~~~~~~---~~~y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l 96 (351)
T PRK14807 23 YKYKMDAN--ETPFE-LPEEVIKNIQEIVKSSQ---VNIYPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF 96 (351)
T ss_pred ceeEccCC--CCCCC-CCHHHHHHHHHHhhcCc---ccCCCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh
Confidence 34677766 44555 57899999988775321 11333444578888899988878899999999999999988877
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
.. +++.|++.+|+|.++.......+ .....++.+..+.. |+++++++
T Consensus 97 ~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l~~~ 143 (351)
T PRK14807 97 IN--------KGDVVIYPHPSFAMYSVYSKIAG-------------AVEIPVKLKEDYTY------------DVGSFIKV 143 (351)
T ss_pred cC--------CCCEEEEeCCChHHHHHHHHHcC-------------CeEEEeecCCCCCC------------CHHHHHHH
Confidence 54 66889999999986543322211 12233333322222 78899988
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCceeeeeccc
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLCLSKGI 273 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d~~~~sK~l 273 (430)
++. .+++++++.. ++|++|...+ .+++.++|++++.++|+||+|.++. ...... ....+...-+-+|||.+
T Consensus 144 ~~~--~~~k~v~l~~-p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~ 215 (351)
T PRK14807 144 IEK--YQPKLVFLCN-PNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY-GNTIVDVINEFENLIVLRTLSKAF 215 (351)
T ss_pred hhc--cCCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc-ccchHHHhhhCCCEEEEecchHhc
Confidence 863 3677777777 8899997766 6777888888888999999998763 111111 11111112233799999
Q ss_pred C-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 274 T-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 274 ~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
+ .| +|+|++++++++++.+.. ....+..+.+++.++.+.|+.-.-++..+.++++.+++.+.|+++ +
T Consensus 216 ~~~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~~---~ 283 (351)
T PRK14807 216 GLAG-LRVGYAVANENILKYLNL--------VKSPYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSKI---P 283 (351)
T ss_pred ccch-hceeeeecCHHHHHHHHH--------ccCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---C
Confidence 7 57 899999999999888765 122345567777777777652111223344455555565655543 3
Q ss_pred CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 353 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
++...++.|.++++.+. + ...+++.|.++||.+.++ .+++|++++ ++++.+.+++.|++++
T Consensus 284 g~~~~~~~~~~~~i~~~-~--------~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 284 GIKVYPSKTNFILVKFK-D--------ADYVYQGLLERGILVRDFSKVEGLEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred CcEECcCCccEEEEEcC-C--------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 33334556777666554 2 357889999999999764 257999865 6788899998887753
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=211.63 Aligned_cols=314 Identities=14% Similarity=0.036 Sum_probs=203.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~ 131 (430)
.|.+.+++.+.......++...+..++.+.+++++.+..+ ..++|++|+|+++|+..+++++.. +++.|++
T Consensus 100 ~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~-~~~~Iiit~G~~~al~~~~~~l~~--------pgd~Vlv 170 (431)
T PRK15481 100 LPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCP-VAFEIDLTSGAIDAIERLLCAHLL--------PGDSVAV 170 (431)
T ss_pred hHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccC-CcCeEEEecCcHHHHHHHHHHhCC--------CCCEEEE
Confidence 3566777766544332222222233444455554443332 346899999999999999998765 6788999
Q ss_pred EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 132 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
.+|+|.++.......+. ....++.+.. .. |+++|+++++. +++++++.|.+
T Consensus 171 ~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~--g~-----------~~~~l~~~~~~---~~k~i~~~p~p 221 (431)
T PRK15481 171 EDPCFLSSINMLRYAGF-------------SASPVSVDAE--GM-----------QPEKLERALAQ---GARAVILTPRA 221 (431)
T ss_pred eCCCcHHHHHHHHHcCC-------------eEEeeccCCC--CC-----------CHHHHHHHHhc---CCCEEEECCCC
Confidence 99999887544443222 2233333211 11 78899988863 46666666437
Q ss_pred ccCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCCCCcccccccccCCCCCc---eeeeecccCCCccccEEEEEcH
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLCLSKGITGGYLPLSLVMTTD 287 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~-gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~~sK~l~gG~~~ig~~~~~~ 287 (430)
+|++| ...+.+.+++|.++|+++ ++++|.||+|..|...+....... ..+. +-+|||.++.| +|+|++++++
T Consensus 222 ~NPTG-~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~--~~~~vi~~~SfSK~~~~G-lRiG~~i~~~ 297 (431)
T PRK15481 222 HNPTG-CSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQ--TTQRWALIRSVSKALGPD-LRLAFVASDS 297 (431)
T ss_pred CCCCC-ccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcC--CCCCEEEEeeeccccCCC-ceeEEEeCCH
Confidence 88888 556788899999999999 999999999997743321111111 1223 33799999977 8999999999
Q ss_pred HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHchhcCCCeee-Eeecce
Q psy14484 288 KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMKKITKALTSLITHPKIIN-FRQKGM 362 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~g~ 362 (430)
++++.+.. .....+++.+.+++.++.++|+.-.- ....+.+++..+.+.+.|++. . +.. .+..|+
T Consensus 298 ~~~~~~~~------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~---~-~~~~~p~gg~ 367 (431)
T PRK15481 298 ATSARLRL------RLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY---G-IAIPSPGDGL 367 (431)
T ss_pred HHHHHHHH------HHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc---C-CccccCCCeE
Confidence 98887754 11223345677888888777752110 122344455555555555543 2 222 234466
Q ss_pred EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 363 IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 363 ~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
++++.+. .+ ..++++.|.++||.+.|+ ++++|++++. .+++++++++++|.++++
T Consensus 368 f~~~~l~-~~-------~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 368 NLWLPLD-TD-------SQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINRLAADLHQALN 430 (431)
T ss_pred EEEEECC-CC-------HHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHHHHHHHHHHhc
Confidence 6666665 31 256888888999999984 1479998764 568999999999998875
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-24 Score=202.82 Aligned_cols=321 Identities=16% Similarity=0.201 Sum_probs=213.1
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.+++||..| .+.+|. +|.+.+++.+.+.... .|+.....++++.+++.++.++++|++|+|+++++..++++
T Consensus 19 ~~~~~l~~~--~~~~~~-p~~~~~a~~~~~~~~~-----~Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 19 NMILDFSAN--INPLGV-PESLKQAITENLDKLV-----EYPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred cceEEecCC--CCCCCC-CHHHHHHHHHHHHhhh-----cCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence 457898776 566664 7899999988765432 23333456888888888888899999999999999998886
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+ . + +.|++.+|+|+.+.......+ .....++........ -| +++.+
T Consensus 91 ~-~--------~-~~v~i~~P~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~----------~d-~~~~~ 136 (354)
T PRK06358 91 T-K--------P-KKVLILAPTFAEYERALKAFD-------------AEIEYAELTEETNFA----------AN-EIVLE 136 (354)
T ss_pred h-C--------C-CcEEEecCChHHHHHHHHHcC-------------CeeEEEeCccccCCC----------cc-HHHHH
Confidence 4 2 3 478899999987754332221 122333332110000 04 34444
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCCc---eeee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPD---FLCL 269 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~d---~~~~ 269 (430)
.+. .+++++++.. ++|++| ...+.+.+++|.++|+++++++|+||+|..|...+... ........+. +-+|
T Consensus 137 ~~~---~~~~~v~~~~-P~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 211 (354)
T PRK06358 137 EIK---EEIDLVFLCN-PNNPTG-QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAF 211 (354)
T ss_pred hhc---cCCCEEEEeC-CCCCCC-CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEec
Confidence 443 2355554444 578888 56788889999999999999999999999875544211 1111222233 3379
Q ss_pred ecccC-CCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q psy14484 270 SKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALT 346 (430)
Q Consensus 270 sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 346 (430)
||.++ .| +|+|+++++ +.+.+.+.. ....++.+.++..++.++|+.-+. ....+.+++..+++.+.|+
T Consensus 212 SK~~gl~G-~RiG~lv~~~~~~~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 282 (354)
T PRK06358 212 TKFFAIPG-LRLGYGLTSNKNLAEKLLQ--------MREPWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLS 282 (354)
T ss_pred hhhccCcc-hhheeeecCCHHHHHHHHH--------hCCCCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 67 899999985 677777765 123456677777777777742111 2234455556666666665
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
++ +++...++.|.++++.+. + ..++++.|.++||.+.++ .+++|+++. ++++.+++++
T Consensus 283 ~~---~~~~~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~---~~~~~~~l~~ 347 (354)
T PRK06358 283 EF---KGIKVYKPSVNFIFFKLE-K--------PIDLRKELLKKGILIRSCSNYRGLDENYYRVAVK---SREDNKKLLK 347 (354)
T ss_pred cC---CCcEEcCCcceEEEEEcC-c--------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC---CHHHHHHHHH
Confidence 43 343334567788777665 3 157889999999999985 157999855 8899999999
Q ss_pred HHHHHH
Q psy14484 420 AIFQTF 425 (430)
Q Consensus 420 ~l~~~l 425 (430)
+|++.+
T Consensus 348 ~l~~~~ 353 (354)
T PRK06358 348 ALEVIL 353 (354)
T ss_pred HHHHHh
Confidence 998765
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-23 Score=203.29 Aligned_cols=341 Identities=15% Similarity=0.087 Sum_probs=219.9
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcCC--C-CCeEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQY--K-LGHCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~v~~~~sgteA~~~ 109 (430)
..++||..|. ..++. ++.+.+++.+.+... ..+....+..++.+.+++.+.+.++. . .++|++|+|+++|+..
T Consensus 30 ~~~i~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~ 106 (391)
T PRK07309 30 PGILKLTLGE--PDFTT-PDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSA 106 (391)
T ss_pred CCeEEcCCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 4689998874 34553 677888888876532 12222223345556666666654432 2 3689999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++.+.. +++.|++.+|+|.++.......+ .+...++.+...... |++
T Consensus 107 ~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~-----------d~~ 154 (391)
T PRK07309 107 SLTAILE--------PGDKVLLPAPAYPGYEPIVNLVG-------------AEIVEIDTTENDFVL-----------TPE 154 (391)
T ss_pred HHHHhcC--------CCCEEEEeCCCCcchHHHHHHcC-------------CEEEEEecCCcCCcC-----------CHH
Confidence 9887754 67789999999998743322211 122333332111111 788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccCC--CCCce
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE--IWPDF 266 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~~--~~~d~ 266 (430)
++++++++.+++++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.. ....... ...-+
T Consensus 155 ~l~~~~~~~~~~~~~i~l~~-P~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~ 232 (391)
T PRK07309 155 MLEKAILEQGDKLKAVILNY-PANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILI 232 (391)
T ss_pred HHHHHhhccCCCeEEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEE
Confidence 99998875444678888876 788888 6667788999999999999999999999977543421 1111111 11123
Q ss_pred eeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH
Q psy14484 267 LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITK 343 (430)
Q Consensus 267 ~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~ 343 (430)
-+|||.++ .| +|+|++++++++++.+.. .......+.+.+++.++.++|+... .....+.++++.+++.+
T Consensus 233 ~S~SK~~g~~G-lRvG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 305 (391)
T PRK07309 233 NGLSKSHAMTG-WRIGLIFAPAEFTAQLIK------SHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIE 305 (391)
T ss_pred ecChhhccCcc-ceeEEEEeCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 37999987 56 899999999999888765 1122334556777777777665211 12234555666666666
Q ss_pred HHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec-------CCEEEEeCCCCCCHHHH
Q psy14484 344 ALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPYILNKNEI 414 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i 414 (430)
.|++. . +....+.|.+ +++.++ ...... ..++++.+ .++||.+.|+ ++++|++++ .+++++
T Consensus 306 ~l~~~---~-~~~~~p~gg~~~~~~l~-~~~~~~---~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l 375 (391)
T PRK07309 306 KMTDL---G-FKIIKPDGAFYIFAKIP-AGYNQD---SFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETI 375 (391)
T ss_pred HHHHC---C-CeecCCCeeEEEEEECC-CCCCCC---HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHH
Confidence 66543 2 2233344444 454554 321111 24677664 5689999875 258999766 478999
Q ss_pred HHHHHHHHHHHHHh
Q psy14484 415 QHMTSAIFQTFNEV 428 (430)
Q Consensus 415 ~~~~~~l~~~l~~~ 428 (430)
++++++|++++.+.
T Consensus 376 ~~~i~~l~~~~~~~ 389 (391)
T PRK07309 376 KEAMKRLKEYMEEH 389 (391)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=204.65 Aligned_cols=326 Identities=14% Similarity=0.157 Sum_probs=213.9
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
.++.+++||..| .+++| .+|.+++++.+.+.... .|+.....++++.+++.++.++++|++++|+++++..+
T Consensus 17 ~~~~~~i~l~~~--~~~~~-~p~~~~~a~~~~~~~~~-----~y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~ 88 (356)
T PRK08056 17 ISPDQLLDFSAN--INPLG-MPVSLKRAIIDNLDCAE-----RYPDVEYRHLHQALARHHQVPASWILAGNGETESIFAV 88 (356)
T ss_pred CChhhEEEeccc--cCCCC-CCHHHHHHHHHHHHhcc-----cCcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence 356789999876 67777 67889999988766532 23333467888889988888889999999999999988
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++.+ . +++ +++.+|+|..+.......+ .+...++........ .| ++
T Consensus 89 ~~~l-~--------~g~-viv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~~-~~ 134 (356)
T PRK08056 89 VSGL-K--------PRR-AMIVTPGFAEYRRALQQVG-------------CEIRRYSLREADGWQ----------LT-DA 134 (356)
T ss_pred HHHh-C--------CCC-EEEeCCCcHHHHHHHHHcC-------------CeEEEEecccccCCC----------cc-HH
Confidence 8864 2 333 6777888876643322211 222333332111110 02 23
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccCCCCCceee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHAEIWPDFLC 268 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~~~~~d~~~ 268 (430)
+++.+. ++++++++.. ++|++|. ..+.+.+++|.++|+++++++|+||+|.+|...+... . ........-+.+
T Consensus 135 ~~~~~~---~~~k~v~l~~-p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S 209 (356)
T PRK08056 135 ILEALT---PDLDCLFLCT-PNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRS 209 (356)
T ss_pred HHHhcc---CCCCEEEEeC-CcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEe
Confidence 444443 4566777766 7888885 6788889999999999999999999998875443211 1 111111112337
Q ss_pred eecccC-CCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 345 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l 345 (430)
|||.++ .| +|+|+++++ +++++.+.. ....++.+.+++.++..+++.-. .....+.+++..+++.+.|
T Consensus 210 ~SK~~~~~G-~RiG~~v~~~~~~~~~l~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L 280 (356)
T PRK08056 210 LTKFYAIPG-LRLGYLVNSDDAAVARMRR--------QQMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQAL 280 (356)
T ss_pred chhhccCcc-hhheeeecCCHHHHHHHHH--------hCCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998 57 899999984 567676654 23445566676666666663100 1223344556666666666
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~ 418 (430)
+.+ +.+...++.|.++++.+. .+ ...+++.|+++||.+.++ ++++|++++ ++++.+.++
T Consensus 281 ~~~---~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~ 346 (356)
T PRK08056 281 CAL---PLLTVWPGRANYLFLRCE-RP-------DIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR---SAAENERLL 346 (356)
T ss_pred hcC---CCcEEcCCCCcEEEEEcC-CC-------hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc---CHHHHHHHH
Confidence 554 333333456777776654 31 256889999999999875 258999865 789999999
Q ss_pred HHHHHHHH
Q psy14484 419 SAIFQTFN 426 (430)
Q Consensus 419 ~~l~~~l~ 426 (430)
++|+++++
T Consensus 347 ~~l~~~~~ 354 (356)
T PRK08056 347 AALRNVLT 354 (356)
T ss_pred HHHHHHHc
Confidence 99987653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=206.28 Aligned_cols=320 Identities=12% Similarity=0.108 Sum_probs=213.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
.+..++|+..| .+++| .+|.+.+++.+. .... .|+.....++++.+++.++.++++|++++|+++++..++
T Consensus 50 ~~~~~i~l~~n--~~p~~-~~~~v~~a~~~~-~~~~-----~Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~ 120 (380)
T PLN03026 50 KPEDIVKLDAN--ENPYG-PPPEVLEALGNM-KFPY-----VYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLM 120 (380)
T ss_pred CccceEEccCC--CCCCC-CCHHHHHHHHhh-Hhhc-----cCCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHH
Confidence 35688998887 56676 568888887652 1111 233334568888899988888899999999999999998
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
++... +++.|++.+|+|..+.......+ .....++.+..+.. |+++|
T Consensus 121 ~~~~~--------~gd~Vlv~~P~y~~y~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l 167 (380)
T PLN03026 121 RCVLD--------PGDKIIDCPPTFGMYVFDAAVNG-------------AEVIKVPRTPDFSL------------DVPRI 167 (380)
T ss_pred HHhcC--------CCCEEEEcCCChHHHHHHHHHcC-------------CEEEEeecCCCCCc------------CHHHH
Confidence 87654 56789999999975533222211 12233333222222 78889
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---eee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLC 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~ 268 (430)
++.+.. .+++++++.. ++|++|...+ .+++.++++.. +++|+||+|..|...+.... .....+. +-+
T Consensus 168 ~~~~~~--~~~~~v~l~~-P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~--~~~~~~~viv~~S 237 (380)
T PLN03026 168 VEAVET--HKPKLLFLTS-PNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFSTQESRMK--WVKKYDNLIVLRT 237 (380)
T ss_pred HHHHhc--cCCcEEEEeC-CCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhcCCcchHH--HHHhCCCEEEEec
Confidence 888842 4577777777 8899997766 55556666544 89999999987754332211 1111223 237
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~ 346 (430)
|||.++ .| +|+|++++++++++.+.. ....++.+.+++.++.++|+..+ -++..+.+++..+++.+.|+
T Consensus 238 fSK~~glaG-lRiGy~~~~~~~i~~l~~--------~~~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~ 308 (380)
T PLN03026 238 FSKRAGLAG-LRVGYGAFPLSIIEYLWR--------AKQPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLK 308 (380)
T ss_pred chHhhcCcc-ccceeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 56 899999999999888765 22345667788888877774211 12334455666666666666
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+ +.....+..|.|+++.+. .+. . +.++++.|.++||.+.++ .+++||++. ++++++.++++|
T Consensus 309 ~~---~~~~~~p~~~~f~~~~~~-~~~--~---~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~---~~~~~~~l~~al 376 (380)
T PLN03026 309 EV---PFLEPYPSDANFILCRVT-SGR--D---AKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG---KPEHTDALMEAL 376 (380)
T ss_pred HC---CCCeECCCCCeEEEEECC-CCC--C---HHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---CHHHHHHHHHHH
Confidence 54 332223456777777665 321 1 357899999999999875 268999866 788899999888
Q ss_pred HHH
Q psy14484 422 FQT 424 (430)
Q Consensus 422 ~~~ 424 (430)
++.
T Consensus 377 ~~~ 379 (380)
T PLN03026 377 KQL 379 (380)
T ss_pred HHh
Confidence 753
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-24 Score=204.69 Aligned_cols=338 Identities=11% Similarity=0.056 Sum_probs=211.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
+|+.++||..| ...++ .+|.+.+++.+.+..... +....+..++++.+++++.+..+ .+++ +|++|+|+++|
T Consensus 28 ~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~a 104 (388)
T PRK07366 28 AGKELIDLSLG--SSDLP-APAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEG 104 (388)
T ss_pred cCCCeEEeCCC--CCCCC-CCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHH
Confidence 57788998877 44454 478899999887653211 11122334566667776665543 5677 69999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++++++. +++.|++.+|+|.++.......+. .+..++....... ..
T Consensus 105 l~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------~~ 153 (388)
T PRK07366 105 TAHLPLAVLN--------PGDFALLLDPGYPSHAGGVYLAGG-------------QIYPMPLRAENDF----------LP 153 (388)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEEECCCccCC----------CC
Confidence 9999988765 678899999999987544433222 2223333211000 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-c-ccccCCC-C
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-F-ACEHAEI-W 263 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~-~~~~~~~-~ 263 (430)
|++++++.+. .+++++++.+ ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.. . ....... .
T Consensus 154 d~~~l~~~~~---~~~k~i~l~~-p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 228 (388)
T PRK07366 154 VFADIPTEVL---AQARLMVLSY-PHNPTT-AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEK 228 (388)
T ss_pred CHHHHHHhhc---ccceEEEEeC-CCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCc
Confidence 6677766664 3466777777 889999 5667888999999999999999999999987544321 1 1111111 1
Q ss_pred Cc---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHH
Q psy14484 264 PD---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQD 337 (430)
Q Consensus 264 ~d---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~ 337 (430)
+. +-+|||.++ .| +|+|++++++++++.+.. ......++.....+.++.+++...+ -+...+.++++
T Consensus 229 ~~vi~~~SfSK~~g~~G-lRiG~~v~~~~li~~l~~------~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~ 301 (388)
T PRK07366 229 SVSIEFFTLSKSYNMGG-FRIGFAIGNAQLIQALRQ------VKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQR 301 (388)
T ss_pred ccEEEEeecccccCCcc-hhheehcCCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 22 238999996 57 899999999999887765 1111222222323344444442100 12234445555
Q ss_pred HHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec-------CCEEEEeCCCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
.+.+.+.|+++ +.....+..|.++++.+. ...... +.++++.+ .++||.+.|+ .+++|++++ .
T Consensus 302 r~~l~~~L~~~---~~~~~~p~~g~f~~~~~~-~~~~~~---~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~ 372 (388)
T PRK07366 302 RDAFINALHQI---GWPVPLPEATMYVWAKLP-EPWQGN---SVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFALV--H 372 (388)
T ss_pred HHHHHHHHHHC---CCcccCCCeeEEEEEECC-cccCCC---HHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEEec--C
Confidence 55565655543 221122344666667665 321101 25677776 4679999985 268899765 5
Q ss_pred CHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQT 424 (430)
Q Consensus 410 t~e~i~~~~~~l~~~ 424 (430)
+++++++++++|.+.
T Consensus 373 ~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 373 DPDILEEAVERIAAF 387 (388)
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999999875
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=205.23 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=216.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.|..++||..| ...++. ++.+.+++.+.+.... .+....+..++++.+++.+.+.++ .+++ +|++|+|++++
T Consensus 28 ~~~~~i~l~~~--~p~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 104 (405)
T PRK09148 28 AGADIIDLGMG--NPDLPT-PQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEG 104 (405)
T ss_pred cCCCeEEcCCC--CCCCCC-CHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHH
Confidence 57788998776 344543 6788888887664311 111122334566777777765543 4566 79999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++++++. +++.|++.+|+|.++.......+ ..+..++...+ ..
T Consensus 105 l~~~~~~l~~--------~gd~Vl~~~P~y~~~~~~~~~~g-------------~~v~~v~~~~~--~~----------- 150 (405)
T PRK09148 105 FANMAQAITA--------PGDVILCPNPSYPIHAFGFIMAG-------------GVIRSVPAEPD--EE----------- 150 (405)
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCCcccHHHHHhcC-------------CEEEEEeCCCC--CC-----------
Confidence 9999988865 67889999999998744332211 12223332211 00
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc--cccCC---
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA--CEHAE--- 261 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~--~~~~~--- 261 (430)
+++++++.++.+..++.++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.... ....+
T Consensus 151 ~~~~l~~~~~~~~~~~~~v~l~~-P~NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~ 228 (405)
T PRK09148 151 FFPALERAVRHSIPKPIALIVNY-PSNPTA-YVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKD 228 (405)
T ss_pred CccCHHHHHhhccccceEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccC
Confidence 23445555554434566666666 678888 666788899999999999999999999997754332211 11111
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
....+-+|||.++ .| +|+|++++++++++.+.. .....+++.+.+++.++.+.|+..+ -+...+.++++.
T Consensus 229 ~~i~~~SfSK~~~~pG-lR~G~~v~~~~~i~~l~~------~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r 301 (405)
T PRK09148 229 VTVEFTSMSKTFSMAG-WRMGFAVGNERLIAALTR------VKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRR 301 (405)
T ss_pred cEEEEeccccccCCcc-hheeeeeCCHHHHHHHHH------HHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1112347999998 57 899999999999888765 2222345566777777776664111 022334455555
Q ss_pred HHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+.+.+.|+++ +. ....+ .|.++++.++ ....... ..++++.|+ ++||.+.|+ .+++|+++. .
T Consensus 302 ~~l~~~L~~~---~~-~~~~p~~g~f~~~~l~-~~~~~~~--~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~Ri~~~--~ 372 (405)
T PRK09148 302 DVLVESFGRA---GW-DIPPPAASMFAWAPIP-EAFRHLG--SLEFSKLLVEKADVAVAPGVGFGEHGDGYVRIALV--E 372 (405)
T ss_pred HHHHHHHHHc---CC-ccCCCCeeEEEEEECC-CccCCCC--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--C
Confidence 5566655543 22 22223 4556666665 3211011 256777765 689999985 258999765 6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
+++.+.+++++|.+++.+
T Consensus 373 ~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 373 NEQRIRQAARNIKRFLSS 390 (405)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 889999999999988764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-23 Score=202.19 Aligned_cols=337 Identities=15% Similarity=0.112 Sum_probs=220.4
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcCCC---CCeEEEcCCchHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQYK---LGHCFYGSDGASAVEV 109 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~---~~~v~~~~sgteA~~~ 109 (430)
.++|+..| ...+. .++.+.+|+.+.+..... +....+..+..+.+++.+++.++.. .+++++++|+++++..
T Consensus 28 ~~~~l~~g--~~~~~-~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 28 GTISLGQG--VVSYP-PPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred CeEEccCC--CCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 35676665 33344 567888999887654321 1222344567788888998887643 5689999999999998
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++..++. +++.|++.+|+|..+...... . ......++.+.++.. |++
T Consensus 105 ~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~-~------------g~~~~~v~~~~~~~~------------d~~ 151 (389)
T PRK05957 105 AILAITD--------PGDEIILNTPYYFNHEMAITM-A------------GCQPILVPTDDNYQL------------QPE 151 (389)
T ss_pred HHHHhcC--------CCCEEEEeCCCCcCHHHHHHh-c------------CCEEEEeecCCCCCc------------CHH
Confidence 8887654 567899999999766432221 1 122233443322222 889
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cc-cccCCCC---C
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA-CEHAEIW---P 264 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~-~~~~~~~---~ 264 (430)
++++.++ ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.. .. ....+.. .
T Consensus 152 ~l~~~i~---~~~klv~~~~-p~NPtG-~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i 226 (389)
T PRK05957 152 AIEQAIT---PKTRAIVTIS-PNNPTG-VVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTI 226 (389)
T ss_pred HHHHhcC---cCceEEEEeC-CCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEE
Confidence 9998885 4677777777 888899 5556777999999999999999999999977544321 11 1111222 2
Q ss_pred ceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 265 DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 265 d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
.+.+|||.++ .| +|+|++++++++++.+.. .......+.+.+++.++..+|+.-. -++..+.++++.+.+
T Consensus 227 ~~~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l 299 (389)
T PRK05957 227 SLYSLSKAYGFAS-WRIGYMVIPIHLLEAIKK------IQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQIL 299 (389)
T ss_pred EEecchhhccCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 2447999997 46 899999999999888775 1222233445566666666664210 122334456666666
Q ss_pred HHHHHchhcCCCe-eeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCH
Q psy14484 342 TKALTSLITHPKI-INFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 411 (430)
Q Consensus 342 ~~~l~~l~~~~~~-~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~ 411 (430)
.+.|+.+ +.+ ...++. |.++++.+. .+.. +.++++.|. ++||.+.|+ ++++|++++. .++
T Consensus 300 ~~~L~~~---~~~~~~~~~~gg~~~~~~~~-~~~~-----~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~-~~~ 369 (389)
T PRK05957 300 LKSLGQL---QDRCTLHPANGAFYCFLKVN-TDLN-----DFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGA-LQK 369 (389)
T ss_pred HHHHHhc---CCCccccCCCeeEEEEEeCC-CCCC-----hHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEec-CCH
Confidence 6666654 221 222344 445555554 3211 357888886 579999985 2479998753 578
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14484 412 NEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~~~ 429 (430)
+++++.+++|.+.+.+++
T Consensus 370 ~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 370 ATAKEGIERLVQGLKTIV 387 (389)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999988764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-23 Score=199.82 Aligned_cols=335 Identities=14% Similarity=0.047 Sum_probs=213.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~ 109 (430)
|..++++..|. ..++ .++.+.+++.+.+.... .+....+..++++.+++.+.+.. +.++++|++|+|+++|+..
T Consensus 31 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 107 (387)
T PRK08960 31 GHDVIHLEIGE--PDFT-TAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLL 107 (387)
T ss_pred CCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHH
Confidence 45678877763 3333 47889999988876421 11122233455566666665543 3577899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++.+... +++.|++.+|+|..+........ .....++.+...... .|++
T Consensus 108 ~~~~~~~--------~gd~vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~d~~ 156 (387)
T PRK08960 108 ASSLLVD--------PGKHWLLADPGYPCNRHFLRLVE-------------GAAQLVPVGPDSRYQ----------LTPA 156 (387)
T ss_pred HHHHhcC--------CCCEEEEcCCCCcchHHHHHhcC-------------CeEEEEecCcccCCC----------CCHH
Confidence 9987754 67889999999988754333221 122334433211100 1788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 267 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~-- 267 (430)
++++.++ +++.++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|.++...+... ......++++
T Consensus 157 ~l~~~~~---~~~~~i~i~~-p~NPtG-~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~--~~~~~~~~vi~~ 229 (387)
T PRK08960 157 LVERHWN---ADTVGALVAS-PANPTG-TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--SVLEVDDDAFVL 229 (387)
T ss_pred HHHHHhC---ccceEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--ChhhccCCEEEE
Confidence 8888875 3444555555 667888 55677889999999999999999999998774432211 1123334544
Q ss_pred -eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHH
Q psy14484 268 -CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQDMKKI 341 (430)
Q Consensus 268 -~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~l 341 (430)
+|||.++ .| +|+|++++++++++.+.. .....+.+.+.+.+.++.++++. +..++ .+.+++..+.+
T Consensus 230 ~S~SK~~g~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l 301 (387)
T PRK08960 230 NSFSKYFGMTG-WRLGWLVAPPAAVPELEK------LAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFL 301 (387)
T ss_pred eecccccCCcc-cEEEEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHH
Confidence 5999997 46 899999999998887764 22233445677777777776642 11122 33344445555
Q ss_pred HHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec--------CCEEEEeCCCCCCH
Q psy14484 342 TKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYLMPPYILNK 411 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~--------~~~lR~~~~~~~t~ 411 (430)
.+.|++. +..... +..|.++++.+. .... . ...+++.|+ ++||.+.|+ ++++|++++. +.
T Consensus 302 ~~~L~~~---~~~~~~~p~g~~f~~~~~~-~~~~-~---~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~--~~ 371 (387)
T PRK08960 302 LPALREL---GFGIAVEPQGAFYLYADIS-AFGG-D---AFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQ--SL 371 (387)
T ss_pred HHHHHhc---CCcCCcCCCeeEEEEEecc-ccCC-C---HHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecC--CH
Confidence 5555543 221112 233566666665 3111 1 256887765 579999974 2589998774 68
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTFN 426 (430)
Q Consensus 412 e~i~~~~~~l~~~l~ 426 (430)
+++.+++++|.+++.
T Consensus 372 ~~l~~al~~l~~~~~ 386 (387)
T PRK08960 372 PRLQEAVERIARGLR 386 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 889999999887764
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=197.83 Aligned_cols=333 Identities=13% Similarity=0.028 Sum_probs=209.6
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVALK 112 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~al~ 112 (430)
++||.++. ..++ .+|++.+++.+.......+..+.+..++++.+++.+.+..+ .+++ +|++|+|+++|+..++.
T Consensus 2 ~~~~~~g~--p~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~ 78 (350)
T TIGR03537 2 LFDFGTGD--PKEP-TPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPL 78 (350)
T ss_pred eEeccCCC--CCCC-CCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHH
Confidence 56877774 3344 37889999888765433222223334666777777766544 4566 89999999999999888
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+++.. |. +++.|++.+|+|.++.......+. ....++.+..... .-|+++++
T Consensus 79 ~~~~~----g~-~~d~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~----------~~d~~~l~ 130 (350)
T TIGR03537 79 VFIDP----EE-DRRRVIFGTPGYPVYERGALFAGG-------------EPTAVKLKKEDGF----------LLRLEKVE 130 (350)
T ss_pred HHcCC----CC-CCceEEEcCCCCcchHHHHHhcCC-------------EEEEcccCcccCC----------ccCHHHHH
Confidence 77641 00 126899999999987554433222 2223333211110 01788898
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC--Cceeeee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLS 270 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~--~d~~~~s 270 (430)
+++. ++++++++.+ ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+........+.. .-+.+||
T Consensus 131 ~~~~---~~~~~i~i~~-p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~S 205 (350)
T TIGR03537 131 KSIL---EETKIVWINY-PHNPTG-ATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLS 205 (350)
T ss_pred Hhhh---hccEEEEEeC-CCCCcC-cccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecc
Confidence 8886 3567777777 888998 6677888999999999999999999999865322221111111111 1123689
Q ss_pred cccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHch
Q psy14484 271 KGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 271 K~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l 348 (430)
|.++. | +|+|++++++++.+.+.. .....+.+.+++++.++.+++..-+ .....+.++++.+.+.+.|+..
T Consensus 206 K~~g~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~ 278 (350)
T TIGR03537 206 KRSGMTG-YRSGFVAGDEKLISFLRK------LRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV 278 (350)
T ss_pred cccCCcc-ccceeeecCHHHHHHHHH------HHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99864 6 899999999988877765 1122233444455565655553100 0123344555555555555543
Q ss_pred hcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 349 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
. +....+.|. ++++.++ ... . +..+++.|.++||.+.++ .+++|+++. .+++++++++++
T Consensus 279 ---g-~~~~~~~g~~~~~~~~~-~~~--~---~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~~l~~ 346 (350)
T TIGR03537 279 ---G-LEYLYPDATFYLWVKVP-SGI--D---AKDYALRLLENGIVVAPGENFGSGEEGYVRVALV--PTLEECEEALRL 346 (350)
T ss_pred ---C-CcccCCCeEEEEEEECC-CCC--C---HHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec--CCHHHHHHHHHH
Confidence 2 222334444 4556655 321 1 367999999999999874 267899753 688999999998
Q ss_pred HHH
Q psy14484 421 IFQ 423 (430)
Q Consensus 421 l~~ 423 (430)
|++
T Consensus 347 ~~~ 349 (350)
T TIGR03537 347 WER 349 (350)
T ss_pred Hhc
Confidence 875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=201.58 Aligned_cols=317 Identities=11% Similarity=0.003 Sum_probs=210.4
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
+.++++..| .++++ .+|.+.+++.+.+.... .|+.....++++.+++.++.++++|++|+|+++++..++..
T Consensus 43 ~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~-----~Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNAN--ECPLG-PSPAARDAAARSAALSG-----RYDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCC--CCCCC-CCHHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHH
Confidence 456676666 45565 57899999988765432 23334477888999999888899999999999999999988
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+.. +++.|++.+|+|..+.......+ .+...++.+..+.. |++++++
T Consensus 115 l~~--------~gd~Vli~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l~~ 161 (370)
T PRK09105 115 FTS--------PTAGLVTADPTYEAGWRAADAQG-------------APVAKVPLRADGAH------------DVKAMLA 161 (370)
T ss_pred HcC--------CCCEEEEeCCChHHHHHHHHHcC-------------CeEEEecCCCCCCC------------CHHHHHh
Confidence 764 56889999999987744333222 22233333222221 6777765
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---eee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 270 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~s 270 (430)
.. .+++++++.. ++|++|. ..+.+.++++.+.|+ +++++|+||+|..|.... ...+..+..++++ +||
T Consensus 162 ~~----~~~~~v~l~n-P~NPTG~-~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~~~--s~~~~~~~~~~vi~~~SfS 232 (370)
T PRK09105 162 AD----PNAGLIYICN-PNNPTGT-VTPRADIEWLLANKP-AGSVLLVDEAYIHFSDAP--SVVDLVAQRKDLIVLRTFS 232 (370)
T ss_pred cC----CCCCEEEEeC-CCCCCCc-CcCHHHHHHHHHhCC-CCcEEEEECchHHhccCc--chHHHHhhCCCEEEEeccc
Confidence 52 2455555555 6788884 567777888887764 589999999998664321 1112212234433 689
Q ss_pred cccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHch
Q psy14484 271 KGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 271 K~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l 348 (430)
|.++. | +|+|++++++++++.+.. . ..+..+.+++.++.++|+..+ .+...+.++++.+++.+.|+++
T Consensus 233 K~~g~~G-lRiG~~v~~~~~i~~l~~--------~-~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~ 302 (370)
T PRK09105 233 KLYGMAG-MRLGLAAARPDLLAKLAR--------F-GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKKK 302 (370)
T ss_pred HhhcCCc-cceeeeecCHHHHHHHHh--------c-CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99974 6 899999999999888775 1 233456667777777665211 1223345556666666666654
Q ss_pred hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
. +...++.|.++.+.+. .+ ..++++.|.++||.+.. ..+++|++++ +++++++++++|++.
T Consensus 303 -g---~~~~~~~~~f~~~~~~-~~-------~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~ 367 (370)
T PRK09105 303 -G---YKCTPSQANCFMVDVK-RP-------AKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFAKV 367 (370)
T ss_pred -C---CCcCCCCCcEEEEeCC-CC-------HHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHHHH
Confidence 2 2233466777765443 21 35799999999999842 1478999866 788999999998876
Q ss_pred H
Q psy14484 425 F 425 (430)
Q Consensus 425 l 425 (430)
+
T Consensus 368 ~ 368 (370)
T PRK09105 368 M 368 (370)
T ss_pred h
Confidence 5
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=201.29 Aligned_cols=335 Identities=12% Similarity=0.057 Sum_probs=213.1
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCC-eEEEcCCchHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLG-HCFYGSDGASAV 107 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~-~v~~~~sgteA~ 107 (430)
.|+.++||..|. ..++ .++.+.+++.+.+.....+....+..++++.+++.+.+.++ .+++ +|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~--p~~~-~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al 103 (396)
T PRK09147 27 ADLPPISLSIGE--PKHP-TPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREAL 103 (396)
T ss_pred cCCCeEecCCCC--CCCC-CCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHH
Confidence 578999988873 4454 46788888887765433222223345667778887776655 4554 899999999999
Q ss_pred HHHHHHHHHhhhhcCCCC---CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 108 EVALKMSFHYWYNKGFLN---KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~---~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
..+++++.. + ++.|++.+|+|.++.......+ .+...++.......
T Consensus 104 ~~~~~~l~~--------~~~~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~vp~~~~~~~---------- 152 (396)
T PRK09147 104 FAFAQTVID--------RDGPGPLVVCPNPFYQIYEGAALLAG-------------AEPYFLNCDPANNF---------- 152 (396)
T ss_pred HHHHHHHcC--------CCCCCCEEEEcCCCccchHHHHHhcC-------------CEEEEeccCccccC----------
Confidence 999998875 4 6789999999987744333222 12233433211100
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--ccc-cc---
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFA-CE--- 258 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~-~~--- 258 (430)
.-|++++++.+. .+++++++.. ++|++| ...+++.+++|.++|++|++++|+||+|..+...+. ... ..
T Consensus 153 ~~d~~~l~~~~~---~~~k~i~l~n-P~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 227 (396)
T PRK09147 153 APDFDAVPAEVW---ARTQLLFVCS-PGNPTG-AVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAA 227 (396)
T ss_pred ccCHHHHHHHHh---hccEEEEEcC-CCCCcC-ccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcc
Confidence 017888887775 3566666666 788888 567888999999999999999999999997744331 111 11
Q ss_pred cCCC--CCc---eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHH
Q psy14484 259 HAEI--WPD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNIL 331 (430)
Q Consensus 259 ~~~~--~~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~ 331 (430)
..+. .+. +-+|||.++. | +|+|++++++++++.+.. .....+++.+++.+.++.+++..-+ -....
T Consensus 228 ~~~~~~~~~vi~~~S~SK~~~~~G-lRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~ 300 (396)
T PRK09147 228 ELGRDDFKRLVVFHSLSKRSNVPG-LRSGFVAGDAALLKKFLL------YRTYHGCAMPPAVQAASIAAWNDEAHVRENR 300 (396)
T ss_pred ccCccccccEEEEeccccccCCcc-ceeeeecCCHHHHHHHHH------HhhhcccCCCHHHHHHHHHHhcchhHHHHHH
Confidence 1111 122 3379997654 5 899999999999887764 1122345567777777666653100 01123
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------------
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------- 397 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~------------- 397 (430)
+.+++..+.+.+.|+.. ... ..+..|.++++.+. .+ ...+++.|+ ++||.+.|+
T Consensus 301 ~~~~~~~~~~~~~L~~~--~~~--~~p~~g~f~~~~~~-~~-------~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~ 368 (396)
T PRK09147 301 ALYREKFDAVTPILAPV--LDV--QLPDAGFYLWAKVP-GD-------DTEFARRLYADYNVTVLPGSYLAREAHGVNPG 368 (396)
T ss_pred HHHHHHHHHHHHHHHHh--cCC--CCCCeeEEEEEECC-CC-------HHHHHHHHHHhCCEEEeCCccccccccCCCCC
Confidence 33444444444444432 111 12334566666553 21 256777775 679998764
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+++|++++ .+++++++++++|++++.
T Consensus 369 ~~~iRi~~~--~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 369 AGRVRIALV--APLAECVEAAERIVDFCR 395 (396)
T ss_pred CCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence 256888655 568899999999988763
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-23 Score=199.94 Aligned_cols=332 Identities=10% Similarity=0.072 Sum_probs=216.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcCCC--C-CeEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~--~-~~v~~~~sgteA~~~ 109 (430)
..++||..|. ..++ .+|.+.+++.+.+.... .+....+..++++++++.+++.++.. + +++++|+|+++|+..
T Consensus 29 ~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~ 105 (384)
T PRK12414 29 HDALNLSQGA--PNFA-PDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYA 105 (384)
T ss_pred CCeEEcCCCC--CCCC-CCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHH
Confidence 4578888774 3454 47888999888765421 12222344567788888888877643 3 579999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAI 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 188 (430)
+++.+.. +++.|++.+++|..+.......+ .....++... .+.. |+
T Consensus 106 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~------------d~ 152 (384)
T PRK12414 106 AISALVH--------PGDEVIYFEPSFDSYAPIVRLQG-------------ATPVAIKLSPEDFRV------------NW 152 (384)
T ss_pred HHHHhcC--------CCCEEEEeCCCccchHHHHHHcC-------------CEEEEEecCcccccc------------CH
Confidence 9987764 66889999999977643322211 1222333221 1111 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cc-ccCCCCCc-
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHAEIWPD- 265 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~-~~~~~~~d- 265 (430)
++|++.++ ++++++++.. ++|++|. ..+++.+++|.++|++||+++|+||+|..+...+... .+ ...+....
T Consensus 153 ~~l~~~l~---~~~~~v~i~~-p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~ 227 (384)
T PRK12414 153 DEVAAAIT---PRTRMIIVNT-PHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERS 227 (384)
T ss_pred HHHHhhcC---cccEEEEEcC-CCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcE
Confidence 88888885 4567777777 8888984 5667889999999999999999999998765444211 11 11122222
Q ss_pred --eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHH
Q psy14484 266 --FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 341 (430)
Q Consensus 266 --~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l 341 (430)
+.+|||.++ .| +|+|++++++++++.+.. .....+++.+.+++.++.+.|+.-. .....+.++++.+.+
T Consensus 228 i~~~SfSK~~~~pG-lRiG~~v~~~~l~~~l~~------~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l 300 (384)
T PRK12414 228 VIVSSFGKSYHVTG-WRVGYCLAPAELMDEIRK------VHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLL 300 (384)
T ss_pred EEEecccccccCcc-ceEEEEecCHHHHHHHHH------HHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 337999996 57 899999999999887765 2233456677777777776664100 112344556666666
Q ss_pred HHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHHH-HHHHHCCcEEeec---------CCEEEEeCCCCCC
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFF-VAALKNELLLRPI---------GNTVYLMPPYILN 410 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~-~~l~~~Gv~~~~~---------~~~lR~~~~~~~t 410 (430)
.+.|++. + +...++.|.|+.+ .+. ...... ..+++ +.|.++||.+.|+ .+++|++++ .+
T Consensus 301 ~~~L~~~---g-~~~~~~~gg~~~~~~~~-~~~~~~---~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~--~~ 370 (384)
T PRK12414 301 ARELAGS---R-FELLPSEGSFFMLARFR-HFSDES---DSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFS--KD 370 (384)
T ss_pred HHHHHhC---C-CeecCCCcceEEEEccc-ccCCCC---HHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEec--CC
Confidence 6666553 2 2233455655554 444 211101 13455 5567889999884 247999766 47
Q ss_pred HHHHHHHHHHHHH
Q psy14484 411 KNEIQHMTSAIFQ 423 (430)
Q Consensus 411 ~e~i~~~~~~l~~ 423 (430)
++++++++++|.+
T Consensus 371 ~~~~~~~~~rl~~ 383 (384)
T PRK12414 371 DATLVEGARRLCS 383 (384)
T ss_pred HHHHHHHHHHHhh
Confidence 8999999999864
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-23 Score=199.76 Aligned_cols=338 Identities=12% Similarity=0.060 Sum_probs=221.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-C-----CCCCHHHHHHHHHHHhhcCC-CCCeEEEcCCch
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-S-----NLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 104 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~-----~~~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgt 104 (430)
++..|+|-.+ .|..++.+.+++.+.+........ . ....+..+++++.+++++++ ++++|++++|++
T Consensus 18 ~~~~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t 91 (401)
T PRK10874 18 DAGVYLDSAA------TALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTT 91 (401)
T ss_pred CceEEEeCCc------ccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHH
Confidence 3567888544 344678999999988865321111 0 01134567888899999987 678999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++..+++.+... ..+++++||+.++.|++....... .......++..++.+.+...
T Consensus 92 ~~i~~~~~~~~~~----~~~~gd~vl~~~~~~~s~~~~~~~---------~~~~~g~~v~~v~~~~~~~~---------- 148 (401)
T PRK10874 92 ESINLVAQSYARP----RLQPGDEIIVSEAEHHANLVPWLM---------VAQQTGAKVVKLPLGADRLP---------- 148 (401)
T ss_pred HHHHHHHHHhhhc----cCCCcCEEEECCcchHHHHHHHHH---------HHHHhCCEEEEEecCCCCcC----------
Confidence 9999998876420 001557899988887753211110 00111233345554432222
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|++++++.++ ++++++++.. +++++|...| +++|.++|+++|+++|+|++|+ ++.. ..+...+.+
T Consensus 149 --d~~~l~~~i~---~~t~lv~i~~-~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~----~~~~~~~~~ 213 (401)
T PRK10874 149 --DVDLLPELIT---PRTRILALGQ-MSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF----PADVQALDI 213 (401)
T ss_pred --CHHHHHHhcC---cCcEEEEEeC-CcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc----cCCchhcCC
Confidence 7899999885 4678888888 8999998888 9999999999999999999996 3322 122223357
Q ss_pred ceeeee--cccCCCccccEEEEEcHHHHHhhhcc--C-C---------------cccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 265 DFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--N-N---------------INIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 265 d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~-~---------------~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|++++| |.++. ..+|++++++++.+.+.+- + . +..+. .+ +.+..+..+..++++.
T Consensus 214 d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~G--t~~~~~~~al~~al~~ 288 (401)
T PRK10874 214 DFYAFSGHKLYGP--TGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFE-AG--TPNVAGVIGLSAALEW 288 (401)
T ss_pred CEEEEecccccCC--CccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhcc-CC--CcCHHHHHHHHHHHHH
Confidence 887766 96543 3479999999987765420 0 0 00000 01 2344566666666765
Q ss_pred Hhhc---CHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---
Q psy14484 325 FNKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 325 ~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
+.+. ...++.+++.+++.+.|+++ +++... ...+.++.+.+. . . . ..++.+.|.++||.+.++
T Consensus 289 l~~~g~~~~~~~~~~l~~~l~~~l~~~---~g~~~~~~~~~~i~~~~~~-~-~---~--~~~~~~~L~~~gI~v~~g~~~ 358 (401)
T PRK10874 289 LADIDINQAESWSRSLATLAEDALAKL---PGFRSFRCQDSSLLAFDFA-G-V---H--HSDLVTLLAEYGIALRAGQHC 358 (401)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcC---CCEEEeCCCCCcEEEEEEC-C-c---C--HHHHHHHHHHCCcEEeccccc
Confidence 5433 34566666777777777654 332222 233445666554 2 1 1 256888899999998763
Q ss_pred ----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++..+|++|++.++++|+++++++
T Consensus 359 ~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 359 AQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred hHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 2689999999999999999999999988764
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=200.34 Aligned_cols=347 Identities=12% Similarity=0.076 Sum_probs=221.1
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC---CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ---YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~---~~~~-~v~~~~sgteA 106 (430)
.|++++|+..| ...++ .+|.+.+++.+.+..... .+...+...+++.+++++.+..+ .+++ +|++|+|++++
T Consensus 42 ~~~~~i~L~~g--~p~~~-~~~~~~~~l~~~~~~~~~~~Y~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~a 118 (410)
T PRK06290 42 PDMELIDMGVG--EPDEM-ADESVVEVLCEEAKKPENRGYADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPA 118 (410)
T ss_pred CCCCeEEcCCC--CCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHH
Confidence 46788998887 45566 467888888876643211 11123334566667777665544 3565 79999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++.+... +++.|++..|+|.++...+...+. ++..++....... ..
T Consensus 119 l~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~v~~v~~~~~~~~----------~~ 167 (410)
T PRK06290 119 LAMLPSCFIN--------PGDVTLMTVPGYPVTGTHTKYYGG-------------EVYNLPLLEENNF----------LP 167 (410)
T ss_pred HHHHHHHhCC--------CCCEEEEeCCCCccHHHHHHHcCC-------------EEEEEecCCCcCC----------cC
Confidence 9999887764 678899999999987544333221 2223333211000 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCC---C
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAE---I 262 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~---~ 262 (430)
|++++++.+. .+++++++.. ++|++| ...+.+.+++|.++|++|+++||+||+|..+...+.... ....+ .
T Consensus 168 d~~~l~~~~~---~~~k~i~l~n-P~NPTG-~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~ 242 (410)
T PRK06290 168 DLDSIPKDIK---EKAKLLYLNY-PNNPTG-AVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEV 242 (410)
T ss_pred CHHHHHHhhc---ccceEEEEEC-CCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCcccc
Confidence 7788888775 3567777776 788888 666888899999999999999999999997643332111 11111 1
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKK 340 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~ 340 (430)
..-+-+|||.++ .| +|+|++++++++++.+.. .......+.+.+++.++..+|+..+ .+...+.++++.+.
T Consensus 243 ~I~i~SfSK~~g~~G-lRiG~ii~~~~l~~~l~~------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 315 (410)
T PRK06290 243 GVEIHSLSKAYNMTG-WRLAFVVGNELIVKAFAT------VKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDK 315 (410)
T ss_pred EEEEeechhhcCCch-hheEeEEeCHHHHHHHHH------HHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 122347999996 46 899999999999887765 1122233334566666666664211 12334455566666
Q ss_pred HHHHHHchhcCCCeeeEeecceEEE-EEEeecCCccc--hhHHHHHHHHHHHCCc-EEeec---CCEEEEeCCCC-CCHH
Q psy14484 341 ITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQI--ETFSKKFFVAALKNEL-LLRPI---GNTVYLMPPYI-LNKN 412 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~--~~~a~~~~~~l~~~Gv-~~~~~---~~~lR~~~~~~-~t~e 412 (430)
+.+.|+++ + +...++.|.++. +.+. ...... ..-+.++++.|+++|+ ++.|+ ++++||+++.. .+++
T Consensus 316 l~~~L~~~---g-~~~~~p~g~f~l~v~lp-~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~lRi~~~~~~~~~~ 390 (410)
T PRK06290 316 LVKILNEV---G-FKAEMPGGTFYLYVKAP-KGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFLRFSVTFEAKDEE 390 (410)
T ss_pred HHHHHHhC---C-CeecCCCeeeEEEEECC-CccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeEEEEEEccccccc
Confidence 66666554 2 223345556654 4554 321000 0013679999998865 44454 36899977633 5889
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14484 413 EIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~~~ 429 (430)
+.++++++|++.|.++.
T Consensus 391 ~~~~~~~~l~~~~~~~~ 407 (410)
T PRK06290 391 EEDRILEEIKRRLSDVE 407 (410)
T ss_pred chhHHHHHHHHHHhhcc
Confidence 99999999999998763
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=199.92 Aligned_cols=332 Identities=17% Similarity=0.167 Sum_probs=213.9
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhh-ccccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al 111 (430)
.++||..| ...+. .+|++.+++.+.+.. ...+....+..++++.+++.+.+.. +.++++|++|+|+++|+..++
T Consensus 30 ~~i~l~~g--~p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~ 106 (384)
T PRK06348 30 DIIDLSLG--DPDLI-TDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLAL 106 (384)
T ss_pred CcEEcCCC--CCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHH
Confidence 57888877 33444 357777766554432 1112222233355666777665543 357789999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-C-CCCCCCCCChhHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-D-SRNINKGNSANEIARCAIF 189 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~d~~ 189 (430)
+++.. +++.|++..|+|.++.......+. ....++.. . .+.. |++
T Consensus 107 ~~~~~--------~gd~vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------------d~~ 153 (384)
T PRK06348 107 QSILD--------PGDEVIIHEPYFTPYKDQIEMVGG-------------KPIILETYEEDGFQI------------NVK 153 (384)
T ss_pred HHhcC--------CCCEEEEeCCCCcchHHHHHHcCC-------------EEEEecCCcCcCCcC------------CHH
Confidence 98864 667899999999887554443222 11222221 1 1111 788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-ccCCCCCc---
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPD--- 265 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~~~~~d--- 265 (430)
+|++.++ ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.++...+..... ...+..+.
T Consensus 154 ~l~~~~~---~~~~~v~l~~-p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 228 (384)
T PRK06348 154 KLEALIT---SKTKAIILNS-PNNPTG-AVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTIT 228 (384)
T ss_pred HHHHhhC---cCccEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEE
Confidence 9988885 3556666666 788888 5668888999999999999999999999987543321111 11111222
Q ss_pred eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHH
Q psy14484 266 FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKIT 342 (430)
Q Consensus 266 ~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~ 342 (430)
+.+|||.++ .| +|+|++++++++.+.+.. .....+++.+.+++.++..++...+ .+.+.+.++++.+++.
T Consensus 229 ~~SfSK~~~l~G-lRiG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~ 301 (384)
T PRK06348 229 FGSFSKDFAMTG-WRIGYVIAPDYIIETAKI------INEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAY 301 (384)
T ss_pred EecchhccCCcc-ccceeeecCHHHHHHHHH------HHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 337999998 57 899999999998877764 2234466778888887777775211 1223444555566666
Q ss_pred HHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNE 413 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~e~ 413 (430)
+.|+.+ +.+....+.|.+ +++.++ ..... ..++++.|+ +.||.+.|+ .+++|++++ .++++
T Consensus 302 ~~L~~~---~~~~~~~p~gg~~~~~~~~-~~~~~----~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~ 371 (384)
T PRK06348 302 KRIESI---PNLSLHPPKGSIYAFINIK-KTGLS----SVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT--VGIEV 371 (384)
T ss_pred HHHhcC---CCceeccCCeeEEEEEecc-cCCCC----HHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec--CCHHH
Confidence 666543 333333455554 455554 22111 256888876 569999875 258999764 58899
Q ss_pred HHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQT 424 (430)
Q Consensus 414 i~~~~~~l~~~ 424 (430)
+++++++|++.
T Consensus 372 l~~al~~l~~~ 382 (384)
T PRK06348 372 LEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHhh
Confidence 99999998653
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-23 Score=185.73 Aligned_cols=326 Identities=13% Similarity=0.127 Sum_probs=223.3
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.+|+|++|++++++.+-.+++ ....+...++.++..+.++ ..++.++|+++.-.++..+++.... +++.
T Consensus 39 ~pp~i~~Al~~rvdhGvfGY~-~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T~--------~gd~ 109 (388)
T COG1168 39 TPPEIIEALRERVDHGVFGYP-YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALTK--------PGDG 109 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhCc--------CCCe
Confidence 589999999999987644333 4444577888888888764 4677899999999999999998876 7789
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE-E
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA-I 205 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~-v 205 (430)
|++.+|.|+...-. ...++... ...|. ++.... .|+++||+.+.+ +++++ +
T Consensus 110 Vvi~tPvY~PF~~~-i~~n~R~~------------i~~pL~~~~~~y~-----------iD~~~LE~~~~~--~~vkl~i 163 (388)
T COG1168 110 VVIQTPVYPPFYNA-IKLNGRKV------------IENPLVEDDGRYE-----------IDFDALEKAFVD--ERVKLFI 163 (388)
T ss_pred eEecCCCchHHHHH-HhhcCcEE------------EeccccccCCcEE-----------ecHHHHHHHHhc--CCccEEE
Confidence 99999999876322 22222111 11111 111111 299999999984 45454 5
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc-cccccccCC--CCCc---eeeeecccCCCccc
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFFACEHAE--IWPD---FLCLSKGITGGYLP 279 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g-~~~~~~~~~--~~~d---~~~~sK~l~gG~~~ 279 (430)
+|+| +|++| .+++++.|++|.++|.+||+++|.||+|+.+...| +.+.+.... .... +.+-||++.-.++.
T Consensus 164 LCnP--HNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~ 240 (388)
T COG1168 164 LCNP--HNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLK 240 (388)
T ss_pred EeCC--CCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhh
Confidence 5554 66666 89999999999999999999999999999987777 333322111 1111 22346887653378
Q ss_pred cEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcCCCeee
Q psy14484 280 LSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIIN 356 (430)
Q Consensus 280 ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 356 (430)
++.++.+ +++.+.+.. .+...+....|.+++.|..++.+.-+. +++.+.++.+.+++.+.+++ ..|.+.-
T Consensus 241 ~a~~Ii~n~~lr~~~~~-----~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~--~~P~v~v 313 (388)
T COG1168 241 CAYIIISNRELRAKFLK-----RLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNK--HLPGVKV 313 (388)
T ss_pred heeEEecCHHHHHHHHH-----HHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--hCCCcEE
Confidence 8877664 565454443 122344556788999999888875432 45567777788788777765 4577777
Q ss_pred EeecceEEEE-EEeecCCccchhHHHHHHHHHHHC-CcEEeec------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 357 FRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKN-ELLLRPI------G-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 357 ~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~------~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
..++|+++.+ ++. .-.. . .+++.+.|+++ +|.+.++ | +.+|+ ++..+.+-+++++++|+++++.
T Consensus 314 ~~p~gTYL~WLD~r-~l~l-~---d~~l~~~ll~~akVal~~G~~FG~~g~gf~Rl--N~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 314 TEPQGTYLAWLDCR-ELGL-D---DSELAEFLLEEAKVALSPGSTFGEEGSGFVRL--NFACPRAILEEALERLKRALKK 386 (388)
T ss_pred ecCCCceeeeeecc-ccCC-C---hHHHHHHHHHhhcEeccCCCccCcCCCceEEE--ecCCCHHHHHHHHHHHHHHHhc
Confidence 7888988765 554 2221 1 14566666655 5555543 3 67777 7889999999999999998875
Q ss_pred h
Q psy14484 428 V 428 (430)
Q Consensus 428 ~ 428 (430)
.
T Consensus 387 ~ 387 (388)
T COG1168 387 R 387 (388)
T ss_pred c
Confidence 3
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=204.07 Aligned_cols=317 Identities=14% Similarity=0.138 Sum_probs=209.8
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
.++||..+ ...+| .+|.+.+++.+.+.... .++.....++++.+++.+++++++|++++|+++++..++...
T Consensus 23 ~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~-----~y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 23 GAIKLSSN--ETPFG-PLPSVRAAIARAAAGVN-----RYPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred cceeccCC--CCCCC-CCHHHHHHHHHHHHhcC-----cCCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh
Confidence 57888877 34455 46789999988765432 233445677888888888777789999999999988887766
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
.. +++.|++..++|..+...... . ......++.+..... |++++++.
T Consensus 95 ~~--------~gd~Vli~~p~y~~~~~~~~~-~------------g~~~~~v~~~~~~~~------------~~~~l~~~ 141 (352)
T PRK03321 95 AG--------PGDEVIFAWRSFEAYPILVQV-A------------GATPVQVPLTPDHTH------------DLDAMAAA 141 (352)
T ss_pred cC--------CCCEEEeCCCCHHHHHHHHHH-c------------CCEEEEccCCCCCCC------------CHHHHHHh
Confidence 53 567888888887543221111 1 112233333211211 78888888
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccc-cccccCCCCCcee---e
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKF-FACEHAEIWPDFL---C 268 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~-~~~~~~~~~~d~~---~ 268 (430)
++ +++++++++. ++|++|.+.+ .+++.++|++ +++++|+||+|.++...+.. .........++++ +
T Consensus 142 ~~---~~~~~v~l~~-p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S 213 (352)
T PRK03321 142 IT---DRTRLIFVCN-PNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRT 213 (352)
T ss_pred hc---cCCCEEEEeC-CCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEec
Confidence 85 3566777777 8888996665 4455555554 69999999999977554321 1122222234544 6
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHH---HHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMKKITKA 344 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~---~~~~~~~l~~~ 344 (430)
|||.++ .| +|+|++++++++++.+.. ...+++.+.+++.++.++|... +.+.++ +.+..+++.+.
T Consensus 214 ~SK~~g~~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~a~~~l~~~--~~~~~~~~~~~~~r~~~~~~ 282 (352)
T PRK03321 214 FSKAYGLAG-LRVGYAVGHPEVIAALRK--------VAVPFSVNSLAQAAAIASLAAE--DELLERVDAVVAERDRVRAA 282 (352)
T ss_pred chHHhhhHH-HhhhhhcCCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 899997 57 899999999999988875 2346677888888777777521 223222 23333445455
Q ss_pred HHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 345 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 345 l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
|++. +. ...+..|.++++.+. .+ +..+++.|.++||.+.+.+ +.+|++++ +++++++++++|++
T Consensus 283 L~~~---~~-~~~~~~g~~i~i~l~-~~-------~~~~~~~l~~~gI~v~~~~~~~iRi~~~---~~~~~~~~~~al~~ 347 (352)
T PRK03321 283 LRAA---GW-TVPPSQANFVWLPLG-ER-------TADFAAAAAEAGVVVRPFAGEGVRVTIG---APEENDAFLRAARA 347 (352)
T ss_pred HHHC---CC-ccCCCCCCEEEEeCC-CC-------HHHHHHHHHHCCEEEEccCCCcEEEeeC---CHHHHHHHHHHHHH
Confidence 5433 21 222345777777654 31 3578899999999999874 57999854 99999999999998
Q ss_pred HHH
Q psy14484 424 TFN 426 (430)
Q Consensus 424 ~l~ 426 (430)
++.
T Consensus 348 ~~~ 350 (352)
T PRK03321 348 WRA 350 (352)
T ss_pred Hhc
Confidence 764
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=197.81 Aligned_cols=338 Identities=11% Similarity=0.062 Sum_probs=219.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccc-cCCC-----CCHHHHHHHHHHHhhcCCC-CCeEEEcCCch
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-LSNL-----THKPVIKLSEKLSSLTQYK-LGHCFYGSDGA 104 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgt 104 (430)
++.-|+|..+ .|..++.+.+++.+.+....... ...+ ..+..+++++.++++++.. +++|++++|++
T Consensus 15 ~~~iyld~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t 88 (398)
T TIGR03392 15 DGTVYLDSAA------TALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTT 88 (398)
T ss_pred CCeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChH
Confidence 3567888554 34467899999988875432111 0011 1234567888999999874 68999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++..++..+... ...++++||+.++.|++....... .......+++.++.+.....
T Consensus 89 ~~l~~~~~~~~~~----~~~~gd~Vl~~~~~~~s~~~~~~~---------~~~~~g~~v~~v~~~~~~~~---------- 145 (398)
T TIGR03392 89 ESINLVAQSYARP----RLQPGDEIIVSEAEHHANLIPWLM---------VAQQTGAKVVKLPIGADLLP---------- 145 (398)
T ss_pred HHHHHHHHHhhhc----cCCCCCEEEECCcchhHHHHHHHH---------HHHHcCcEEEEEecCCCCCc----------
Confidence 9999998876320 001567889888888763211100 00111233345544322221
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|+++++++++ +++++|++.. ++|++|.+.+ +++|.++|+++|+++|+|++|+ ++.. ..+.....+
T Consensus 146 --~~~~l~~~i~---~~t~lv~i~~-~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~----~~~~~~~~~ 210 (398)
T TIGR03392 146 --DIRQLPELLT---PRTRILALGQ-MSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG----PPDVQALDI 210 (398)
T ss_pred --CHHHHHHHhc---cCceEEEEEC-ccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC----CCChhhcCC
Confidence 7889998885 4678888888 9999998888 9999999999999999999996 3322 122223457
Q ss_pred ceeeee--cccCCCccccEEEEEcHHHHHhhhcc--CCc----------------ccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 265 DFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNI----------------NIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 265 d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~~~----------------~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|+.++| |.++. .++|++++++++.+.+.+. +.. ..+. .+ +.+..+..+..++++.
T Consensus 211 d~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~G--T~~~~~~~a~~~al~~ 285 (398)
T TIGR03392 211 DFYAFSGHKLYGP--TGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFE-AG--TPNIAGVIGLSAALEW 285 (398)
T ss_pred CEEEEecccccCC--CceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhcc-CC--CCCHHHHHHHHHHHHH
Confidence 888888 96543 3589999999887665431 000 0010 11 2344566666667776
Q ss_pred Hhhc---CHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---
Q psy14484 325 FNKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 325 ~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
+++. +..++.+++.+++.+.|+++ +.+.-. .....++.+.+. . . . ...+.+.|.++||.+.++
T Consensus 286 l~~~g~~~i~~~~~~l~~~l~~~l~~l---~g~~~~~~~~~~i~~~~~~-~-~---~--~~~l~~~L~~~gI~v~~g~~~ 355 (398)
T TIGR03392 286 LTDIDIAAAEAWSVSLADLAEERLAQL---PGFRSFRCPGSSLLAFDFA-G-V---H--HSDLAALLAESGIALRAGQHC 355 (398)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcC---CCeEEeCCCCCcEEEEEeC-C-c---C--HHHHHHHHHhCCEEEecCccc
Confidence 5443 34566666777777777655 332211 123445555544 2 1 1 256888899999998753
Q ss_pred ----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++|++++..+|++|++.+++.|++++.++
T Consensus 356 ~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 356 AQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred hHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 2589999999999999999999999988764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=208.72 Aligned_cols=341 Identities=13% Similarity=0.127 Sum_probs=213.9
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~ 108 (430)
.|+.+++|..|.. +++|+ .++++++++.+.+.....+..+.+..++++.+++.+.+.. +.++++|++++|+++++.
T Consensus 144 ~g~~~i~l~~G~p-~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~ 222 (517)
T PRK13355 144 AGTHILKLNIGNP-APFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELIN 222 (517)
T ss_pred cCCCeEEecCcCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHH
Confidence 5778999988643 45665 4678889988877643322222233445556666554432 356789999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARC 186 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (430)
.+++++.. +++.|++.+|+|..+.......+. ..+.++.+. .+..
T Consensus 223 ~~~~~l~~--------~Gd~Vli~~P~y~~y~~~~~~~g~-------------~~v~~~~~~~~~~~~------------ 269 (517)
T PRK13355 223 LSMSALLD--------DGDEVLIPSPDYPLWTACVNLAGG-------------TAVHYRCDEQSEWYP------------ 269 (517)
T ss_pred HHHHHhCC--------CCCEEEEcCCCCcCHHHHHHHCCC-------------EEEEeecCcccCCCC------------
Confidence 99987764 678899999999987654433322 112222221 1222
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCCc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~d 265 (430)
|++++++++. ++++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..|...+... ... ...++
T Consensus 270 d~~~l~~~~~---~~~k~i~i~n-P~NPTG-~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~--~~~~~ 342 (517)
T PRK13355 270 DIDDIRSKIT---SRTKAIVIIN-PNNPTG-ALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIA--SLAPD 342 (517)
T ss_pred CHHHHHHhcC---cCceEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHH--HhCCC
Confidence 7899998885 4566666655 678888 55678889999999999999999999999775544211 111 11233
Q ss_pred --e---eeeecccCC-CccccEEEEEc--HHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHH
Q psy14484 266 --F---LCLSKGITG-GYLPLSLVMTT--DKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQ 332 (430)
Q Consensus 266 --~---~~~sK~l~g-G~~~ig~~~~~--~~~----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~ 332 (430)
+ -+|||.++- | +|+|+++++ +++ .+.+.. .....++.+.+++.++.++|+.... .++.+
T Consensus 343 ~~vi~~~S~SK~~~~~G-~RiG~~i~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~ 414 (517)
T PRK13355 343 LFCVTFSGLSKSHMIAG-YRIGWMILSGNKRIAKDYIEGLNM-------LANMRLCSNVPAQSIVQTALGGHQSVKDYLV 414 (517)
T ss_pred CeEEEEecchhhccCcc-cceEEEEeeCchhhHHHHHHHHHH-------HhcCcCCcChHHHHHHHHHhcCCccHHHHHH
Confidence 2 358998753 6 899999854 443 333321 1122245567777777777742100 11221
Q ss_pred ---HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEE
Q psy14484 333 ---RISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTV 401 (430)
Q Consensus 333 ---~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~l 401 (430)
++.+..+++.+.|+++ +++....++|.|+.| .+. .......+....+.+.|.++||.+.|+ .+++
T Consensus 415 ~~~~~~~~r~~l~~~L~~~---~g~~~~~p~g~fy~~~~l~-~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~ 490 (517)
T PRK13355 415 PGGRVYEQRELVYNALNAI---PGISAVKPKAAFYIFPKID-VKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHF 490 (517)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcccCCCCeeeEEEeecC-cccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEE
Confidence 2233345555555443 444555677888766 443 211000000123445577889999875 2588
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
|++. ..+++++++++++|.+++.+
T Consensus 491 Ris~--~~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 491 RVVY--LPRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred EEEe--CCCHHHHHHHHHHHHHHHHH
Confidence 8865 57899999999999998864
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=203.53 Aligned_cols=335 Identities=12% Similarity=0.079 Sum_probs=208.8
Q ss_pred cccccccCCCCCHHHHHHHHHHHhhcc-cccc-----CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 41 SSWWVNLFGHSNSYINKALKNQLNKLE-HVML-----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 41 ~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
.+.+....||++|++++++..++ ... .+.. +.+..+..++++++++++++.+.+++.++++|+++.+.++..+
T Consensus 23 ~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~ 101 (398)
T cd00613 23 SFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAA 101 (398)
T ss_pred ccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHH
Confidence 34456678999999988866665 221 1111 1233467789999999999766668888887877777777666
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
+... + +++.|++ +..+|+.+.......+... ..+...++.+..... |++++++.
T Consensus 102 ~~~~---~--~gd~Vl~-~~~~h~~~~~~~~~~~~~~--------g~~~~~v~~~~~~~~------------d~~~l~~~ 155 (398)
T cd00613 102 IRAY---H--KRNKVLV-PDSAHPTNPAVARTRGEPL--------GIEVVEVPSDEGGTV------------DLEALKEE 155 (398)
T ss_pred Hhcc---c--CCCEEEE-cCccCcchHHHHHHhcccC--------CcEEEEeccCCCCCc------------CHHHHHHh
Confidence 5420 0 2455555 5557777655554433110 122334444322211 78888888
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecc
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKG 272 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~ 272 (430)
+. +++++|++++ ++ ++|.+. +++++|.++|++||+++|+|++|+.....+ .... ..+|+++ ++|.
T Consensus 156 i~---~~t~~viv~~-~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~---~~~~--~~~d~~~~s~~K~ 222 (398)
T cd00613 156 VS---EEVAALMVQY-PN-TLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLK---PPGE--YGADIVVGNLQKT 222 (398)
T ss_pred cC---CCeEEEEEEC-CC-CCceec---chHHHHHHHHHhcCCEEEEEeccccccCCC---ChHH--cCCCEEEeecccc
Confidence 84 5789999988 76 567663 457999999999999999999876321111 1111 2468765 5576
Q ss_pred c---CCCccccEEEEEcHHHHHhhhcc--CC------cc---------------cccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 273 I---TGGYLPLSLVMTTDKIYNSIYYK--NN------IN---------------IFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 273 l---~gG~~~ig~~~~~~~~~~~~~~~--~~------~~---------------~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
+ ++|++++|+++.++++.+.+... +. .. ......+++++++.+.++.+++..+.
T Consensus 223 ~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~ 302 (398)
T cd00613 223 GVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLG 302 (398)
T ss_pred CCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhC
Confidence 5 33336788999988887764220 00 00 00113345556666666766666554
Q ss_pred hc---CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----cCC
Q psy14484 327 KD---NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----IGN 399 (430)
Q Consensus 327 ~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~~~ 399 (430)
.+ +..++.++++++++++|+++........ .....+.+.+. .. ....+.++++.|.++|+.+.. .++
T Consensus 303 ~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~~v~~~~~-~~---~~~~~~~~~~~L~~~gi~~~~~~~~~~~ 376 (398)
T cd00613 303 PEGLKEIAERAHLNANYLAKRLKEVGGVLPFNG--PFFHEFVLRLP-PL---YGIRAEDLAKALIDGGFHAPTMYLPVDG 376 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC--CeeEEEEEEcC-Cc---chHHHHHHHHhhhhcCccccccccCCCC
Confidence 33 3457888899999999987622111111 11112233333 21 011246799999999998765 357
Q ss_pred EEEEeCCCCCCHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+|++|++.+|++|||+++++|
T Consensus 377 ~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 377 TLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred eEEEEcCCCCCHHHHHHHHHhC
Confidence 8999999999999999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=194.68 Aligned_cols=341 Identities=11% Similarity=0.100 Sum_probs=232.1
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCC-----CCCHHHHHHHHHHHhhcCCCC-CeEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSN-----LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~-----~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgte 105 (430)
+..|+|..++ +..+..|.+++.+........ .+.. ..+...++.++.+++++++++ ++|+||++.|+
T Consensus 22 ~~vylD~aa~------~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~ 95 (405)
T COG0520 22 PLVYLDNAAT------SQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTE 95 (405)
T ss_pred CeEEecCccc------ccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhH
Confidence 3468886654 236789999999987654322 2111 122567889999999998884 89999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.+........ .+++.||+.+--+|....--..+. .....+++.++.+++...
T Consensus 96 aln~va~~l~~~~-----~~gdeIv~s~~EH~sn~~pw~~~~---------~~~Ga~v~~i~~~~~g~~----------- 150 (405)
T COG0520 96 ALNLVARGLGRSL-----KPGDEIVVSDLEHHSNIVPWQELA---------KRTGAKVRVIPLDDDGLL----------- 150 (405)
T ss_pred HHHHHHHHhhhhh-----cCCCEEEEccCcchhhHHHHHHHH---------HhcCcEEEEEecCCCCCc-----------
Confidence 9999888664210 145788877766665432211111 111234566665543333
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
++++++..+ ++++++|.++. ++|.+|++.| +++|.++||++|+++++|.+|+ ++. ...+...+.+|
T Consensus 151 -~~~~~~~~i---~~~Tklvais~-vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h----~~idv~~l~~D 216 (405)
T COG0520 151 -DLDALEKLI---TPKTKLVALSH-VSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGH----LPIDVQELGCD 216 (405)
T ss_pred -CHHHHHHhc---CCCceEEEEEC-ccccccccch----HHHHHHHHHHcCCEEEEECccc-cCc----cCCCchhcCCC
Confidence 788888877 47899999999 9999999999 9999999999999999999997 432 12333445689
Q ss_pred eeeee--cccCCCccccEEEEEcHHHHHhhhcc-CCccccc-----ccCCC----------CCCHHHHHHHHHHHHHHhh
Q psy14484 266 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFL-----HSHSY----------SGNPLACCAALATLEIFNK 327 (430)
Q Consensus 266 ~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~-----~~~t~----------~~~~~~~~aa~~~l~~~~~ 327 (430)
++.|| |.|.|. ..+|.+++++++.+.+.+. ....... ...++ +.|..+..+..++++.++.
T Consensus 217 f~afsgHKwl~gP-~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ 295 (405)
T COG0520 217 FLAFSGHKWLLGP-TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLE 295 (405)
T ss_pred EEEEcccccccCC-CceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHHH
Confidence 99998 767664 4699999999999887431 0000000 00011 1233344444455665543
Q ss_pred ---cCHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCE---
Q psy14484 328 ---DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNT--- 400 (430)
Q Consensus 328 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~--- 400 (430)
++..++.+++.+++.++|+++......... ..++.++.|.+. .- . +..+.+.|.++||.++.+..+
T Consensus 296 ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~-~~-~-----~~dv~~~L~~~gI~vr~g~~ca~p 368 (405)
T COG0520 296 IGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK-GI-H-----PHDVATLLDEKGIAVRAGHHCAQP 368 (405)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeC-CC-C-----HHHHHHHHHhCCeEEEeccccccH
Confidence 556778888888888888877433222111 246777777776 31 1 367999999999888865433
Q ss_pred ----------EEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 401 ----------VYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 401 ----------lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+|+++++++|+||||++++.|+++..
T Consensus 369 ~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 369 LHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred HHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=197.63 Aligned_cols=346 Identities=15% Similarity=0.081 Sum_probs=216.1
Q ss_pred CCCEEEecccccccc-cCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 32 SGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
+|..++|+..|.... .++ .+|.+.+++.+.+..... +....+..++++.+++.+.+..+ .++++|++|+|+++|+
T Consensus 28 ~~~~~i~l~~g~p~~~~~~-p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al 106 (398)
T PRK08363 28 KGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEAL 106 (398)
T ss_pred cCCCeEEEeCCCCCcCCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 467899998885432 344 578899999887754311 11222334555666666554433 5678999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe-CCCC-CCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII-TTPD-SRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 185 (430)
..++.+++. +++.|++.+++|.++.......+.. ...+ +.+. .+.
T Consensus 107 ~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~~-------------~v~~~~~~~~~~~------------ 153 (398)
T PRK08363 107 QLIFGALLD--------PGDEILIPGPSYPPYTGLVKFYGGV-------------PVEYRTIEEEGWQ------------ 153 (398)
T ss_pred HHHHHHhCC--------CCCEEEEcCCCCcchHHHHHHcCCE-------------EEEeccccccCCc------------
Confidence 999987754 6788999999998875433332221 1112 1111 111
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
.|++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.........-...
T Consensus 154 ~d~~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~ 228 (398)
T PRK08363 154 PDIDDIRKKIT---EKTKAIAVIN-PNNPTG-ALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVP 228 (398)
T ss_pred CCHHHHHhhCC---cceEEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCc
Confidence 17788888775 3566666666 788888 555678899999999999999999999987644442211111111122
Q ss_pred e---eeeecccC-CCccccEEEEE--cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHH
Q psy14484 266 F---LCLSKGIT-GGYLPLSLVMT--TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQD 337 (430)
Q Consensus 266 ~---~~~sK~l~-gG~~~ig~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~ 337 (430)
+ -+|||.++ .| +|+|++++ ++++.+.+... . .......++.+.+++.++.++|.... -.+..+.++++
T Consensus 229 vi~~~SfSK~~~~~G-lRiG~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~ 304 (398)
T PRK08363 229 VIVMNGLSKVYFATG-WRLGYIYFVDPEGKLAEVREA--I-DKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKER 304 (398)
T ss_pred EEEEecchhccCCcc-ceEEEEEEeCcHHHHHHHHHH--H-HHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3 37999965 46 89999997 66665554430 0 00011235567777777777664210 12334555666
Q ss_pred HHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHH-HHHHHHCCcEEeec-------CCEEEEeCCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKF-FVAALKNELLLRPI-------GNTVYLMPPYI 408 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~-~~~l~~~Gv~~~~~-------~~~lR~~~~~~ 408 (430)
.+++.+.|+++ +.+....+.|.++.+ .+. ...... ..++ .+.|.++||.+.|+ .+++|+++.
T Consensus 305 ~~~l~~~L~~~---~~~~~~~p~g~~~~~~~l~-~~~~~~---~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~-- 375 (398)
T PRK08363 305 RDYIYKRLNEI---PGISTTKPQGAFYIFPRIE-EGPWKD---DKEFVLDVLHEAHVLFVHGSGFGEYGAGHFRLVFL-- 375 (398)
T ss_pred HHHHHHHHhcC---CCCEecCCCeEEEEEEEec-cCCCCC---HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEec--
Confidence 66666666543 333333556666665 454 311101 1334 45567889999875 257899764
Q ss_pred CCHHHHHHHHHHHHHHHHHhh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+++++++++++|++++.+.+
T Consensus 376 ~~~~~l~~~l~~l~~~~~~~~ 396 (398)
T PRK08363 376 PPVEILEEAMDRFEEFMRERL 396 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999887654
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=200.35 Aligned_cols=322 Identities=11% Similarity=0.104 Sum_probs=211.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVAL 111 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al 111 (430)
+..++|+..| .++++ .+|++++++.+.+...... .|+.....++++.+++.++... ++|++++|+++++..++
T Consensus 25 ~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~---~Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~ 98 (356)
T PRK04870 25 ATGMVKLDAM--ENPYR-LPAELRAELGERLAEVALN---RYPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLA 98 (356)
T ss_pred CCCceeCcCC--CCCCC-CCHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHH
Confidence 5678888776 55666 6789999999887642211 2333334678888888876554 48999999999999998
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+++.. +++.|++.+|+|.++.......+ .....++..+.+.. |++++
T Consensus 99 ~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~i~~~~~~~~------------d~~~l 145 (356)
T PRK04870 99 LACAK--------PGATVLAPEPGFVMYRMSAKLAG-------------LEFVGVPLTADFTL------------DLPAM 145 (356)
T ss_pred HHhcC--------CCCEEEECCCCHHHHHHHHHHcC-------------CEEEEecCCCCCCC------------CHHHH
Confidence 87764 67889999999987643322211 22233433322222 78999
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeec
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK 271 (430)
++.+.. .+++++++.. ++|++|. ..+.+.+++|.++| ++++|+||+|..|......-.....+...-+-+|||
T Consensus 146 ~~~~~~--~~~~~v~l~~-p~NPtG~-~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK 218 (356)
T PRK04870 146 LAAIAE--HRPALVFLAY-PNNPTGN-LFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK 218 (356)
T ss_pred HHHhhc--CCCCEEEEcC-CCCCCCC-CCCHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh
Confidence 998863 3566777766 7888884 45666677777777 789999999987743211001111111112337899
Q ss_pred ccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHchh
Q psy14484 272 GITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 272 ~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
++. | +|+|++++++++++.+.. ....++.+.+++.++..+++..+ -++..++++++.+++.+.|+++
T Consensus 219 -~~~~G-lRiG~~i~~~~~i~~~~~--------~~~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 287 (356)
T PRK04870 219 -LGLAG-LRLGYLAGHPAWIAELDK--------VRPPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAAL- 287 (356)
T ss_pred -hhhHH-HhhhhhhCCHHHHHHHHH--------ccCCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 544 6 899999999999888765 12344566777776666664211 1233455566666666666554
Q ss_pred cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 350 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 350 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+.+...+..|.++++.+. + ...+.+.|.++||.+.++ .+++|++++ ++++++.++++|+
T Consensus 288 --~~~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al~ 353 (356)
T PRK04870 288 --PGVTVFPSAANFILVRVP-D--------AAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG---TPEENAQFLAALK 353 (356)
T ss_pred --CCcEECCCCCeEEEEECC-C--------HHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC---CHHHHHHHHHHHH
Confidence 333333455667666554 2 256888899999999874 258999866 8899999999987
Q ss_pred HHH
Q psy14484 423 QTF 425 (430)
Q Consensus 423 ~~l 425 (430)
+++
T Consensus 354 ~~~ 356 (356)
T PRK04870 354 AAL 356 (356)
T ss_pred HhC
Confidence 653
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=196.33 Aligned_cols=346 Identities=12% Similarity=0.052 Sum_probs=213.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhc--cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.|..++||..+. +.+..++.+.+++.+.+... ..+....+..++++.+++.+.+..+ ..++ +|++|+|+.+|
T Consensus 31 ~~~~~~~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~a 107 (403)
T PRK08636 31 AGEDIIDFSMGN---PDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEG 107 (403)
T ss_pred cCCCEEEcCCcC---CCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHH
Confidence 456789987762 33334566777777655432 1122223344566777887776544 4566 79999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++++++. +++.|++.+|+|.++.......+. +...++.+.+... +.+.+.
T Consensus 108 l~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~--~~d~~~---- 160 (403)
T PRK08636 108 YVHLVQAITN--------PGDVAIVPDPAYPIHSQAFILAGG-------------NVHKMPLEYNEDF--ELDEDQ---- 160 (403)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEEeccccccC--ccChhh----
Confidence 9999998875 678999999999887544333222 2223332211100 000000
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCCc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~d 265 (430)
-.+.++++++++..++.++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+... ......-.++
T Consensus 161 l~~~l~~~~~~~~~~~~~i~~~~-P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~ 238 (403)
T PRK08636 161 FFENLEKALRESSPKPKYVVVNF-PHNPTT-ATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKD 238 (403)
T ss_pred hhhHHHHHHhhccCCceEEEEeC-CCCCCC-ccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccc
Confidence 12356777765444567777666 678888 66778889999999999999999999999775443211 1111111122
Q ss_pred ----eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHH
Q psy14484 266 ----FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQ 336 (430)
Q Consensus 266 ----~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~ 336 (430)
+.+|||.++ .| +|+|++++++++++.+.. ......++.+.+.+.++..+++. .+.+ .+.+++
T Consensus 239 ~~i~~~S~SK~~~~~G-lRiG~iv~~~~li~~~~~------~~~~~~~~~~~~~q~~~~~~~~~--~~~~~~~~~~~~~~ 309 (403)
T PRK08636 239 VAVESYTLSKSYNMAG-WRVGFVVGNKKLVGALKK------IKSWLDYGMFTPIQVAATIALDG--DQSCVEEIRETYRK 309 (403)
T ss_pred cEEEEEecccccCCcc-ceeeeeeCCHHHHHHHHH------HHHHhcccCChHHHHHHHHHHhC--cHHHHHHHHHHHHH
Confidence 336999996 57 899999999999887765 11222334445555555444431 1223 333444
Q ss_pred HHHHHHHHHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPY 407 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~ 407 (430)
+.+.+.+.|++. + +.... ..|.++++.++ +...... ...+.+.++ +.||.+.|+ .+++|++.+
T Consensus 310 ~~~~l~~~L~~~---~-~~~~~p~~g~~~~~~l~-~~~~~~~--~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi~~~- 381 (403)
T PRK08636 310 RRDVLIESFANA---G-WELQKPRASMFVWAKIP-EPARHLG--SLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRIALI- 381 (403)
T ss_pred HHHHHHHHHHHC---C-CcccCCCcceEEEEECC-CccCCCC--HHHHHHHHHHhCCEEEecchhhCcCCCCeEEEEec-
Confidence 444455555442 2 22223 34666666665 3211111 256777654 679999885 268999765
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++++++.+++|++++..
T Consensus 382 -~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 382 -ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred -CCHHHHHHHHHHHHHHHHh
Confidence 6899999999999998865
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-23 Score=196.72 Aligned_cols=302 Identities=13% Similarity=0.080 Sum_probs=197.3
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
+++||.+| .++++. ... ...|+.+...+|++++++.++..+++|++|+|+++++..++++
T Consensus 17 ~~i~l~~N--enp~~~------------~~~-----~~~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~- 76 (332)
T PRK06425 17 RIIDFSAN--INDFMD------------IGD-----ISIYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY- 76 (332)
T ss_pred CEEEeccc--cCCCcC------------hhh-----cccCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-
Confidence 57888887 555531 111 1246777788999999999988889999999999999998864
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
.. ++ .|++.+|+|..+...+...+. +...++... .. .|.+.++
T Consensus 77 ~~--------~~-~vv~~~P~y~~y~~~~~~~G~-------------~v~~vp~~~--~~-----------~~~~~l~-- 119 (332)
T PRK06425 77 IN--------VG-NIIIVEPNFNEYKGYAFTHGI-------------RISALPFNL--IN-----------NNPEILN-- 119 (332)
T ss_pred hC--------CC-cEEEeCCChHHHHHHHHHcCC-------------eEEEEeCCc--cc-----------CcHHHHh--
Confidence 32 33 577779999887555444322 223333321 00 0333333
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---eeeeec
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLCLSK 271 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~~sK 271 (430)
. .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..|...+...........+. +-+|||
T Consensus 120 --~--~~~k~v~l~n-P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK 193 (332)
T PRK06425 120 --N--YNFDLIFIVS-PDNPLG-NLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTK 193 (332)
T ss_pred --h--cCCCEEEEeC-CCCCcC-CccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHH
Confidence 2 2445555555 788888 456788899999999999999999999998854332111111111123 337999
Q ss_pred ccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHchh
Q psy14484 272 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 272 ~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
.++ .| +|+|++++++++++.+.. ...++..+.++..+. ...+.-. .+...+.+++..+++.+.|+++
T Consensus 194 ~~~l~G-lRiGy~v~~~~li~~l~~--------~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~- 262 (332)
T PRK06425 194 ILGIPS-LRIGYIATDDYNMKISRK--------ITEPWSVCDPAIDFI-RSIDLDYVAKHSLDIMENERSYLINNLEAM- 262 (332)
T ss_pred hcCCch-hhheeeecCHHHHHHHHH--------cCCCCccCHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 998 67 899999999999888775 223344444433222 1111100 1234555666666677776654
Q ss_pred cCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 350 THPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 350 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+ +... ++.|.|+++.+. + +.++.+.|+++||.+.++ .+++|+++. ++++.+.++++|
T Consensus 263 --g-~~~~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~---~~~~~~~l~~al 327 (332)
T PRK06425 263 --G-FRAAGDPSANFITFMIP-D--------AHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR---RRSFNIKLVNAL 327 (332)
T ss_pred --C-CEECCCCCceEEEEEcC-C--------HHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC---CHHHHHHHHHHH
Confidence 2 2222 456788777654 2 367899999999999885 258999866 889999999999
Q ss_pred HHHH
Q psy14484 422 FQTF 425 (430)
Q Consensus 422 ~~~l 425 (430)
++++
T Consensus 328 ~~~~ 331 (332)
T PRK06425 328 RNFL 331 (332)
T ss_pred HHHh
Confidence 8765
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-23 Score=198.77 Aligned_cols=322 Identities=12% Similarity=0.090 Sum_probs=203.6
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
++.++||..| .+.++ .+|.+.+++.+.+.... ..|+.....++++.+++.++.++++|++|+|+++++..+++
T Consensus 23 ~~~~i~l~~~--~~~~~-~~~~~~~a~~~~~~~~~----~~y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~ 95 (353)
T PRK05387 23 LAKLIKLNTN--ENPYP-PSPKVLEAIRAALGDDL----RLYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFL 95 (353)
T ss_pred ccceeeccCC--CCCCC-CCHHHHHHHHHHhhhhh----hcCCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence 3568999887 44555 37889999988765311 12333334688888888888788999999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++.. +++.|++.+|+|..+....... ..+...++....+.. |+++++
T Consensus 96 ~l~~--------~gd~vlv~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~------------d~~~l~ 142 (353)
T PRK05387 96 AFFN--------HDRPLLFPDITYSFYPVYAGLY-------------GIPYEEIPLDDDFSI------------DVEDYL 142 (353)
T ss_pred HhcC--------CCCEEEEeCCCHHHHHHHHHHc-------------CCEEEEeecCCCCCC------------CHHHHH
Confidence 8865 6688999999996654322221 122233443322222 667765
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecc
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 272 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~ 272 (430)
+ . ..++++.. ++|++|...+ .+.+++|.+.++ ++++|+||+|..|+........+......-+-+|||.
T Consensus 143 ~------~-~~~v~~~~-P~NPtG~~~~-~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~ 211 (353)
T PRK05387 143 R------P-NGGIIFPN-PNAPTGIALP-LAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKS 211 (353)
T ss_pred h------c-CCEEEEeC-CCCCCCCCCC-HHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHh
Confidence 2 1 23444444 6788886655 444444444332 8999999999877422110011111111112368999
Q ss_pred cC-CCccccEEEEEcHHHHHhhhccCCcccccc-cCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHchh
Q psy14484 273 IT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLH-SHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 273 l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
++ .| +|+|++++++++.+.+.. ... ..+++.+.+++.++.++++..+ .++..++++++.+++.+.|+++
T Consensus 212 ~~~~G-lR~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 283 (353)
T PRK05387 212 RSLAG-LRVGFAIGHPELIEALNR------VKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL- 283 (353)
T ss_pred hcchh-hhceeeecCHHHHHHHHH------hhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 87 56 799999999999887765 111 1345667777777777664211 1234455566666666666654
Q ss_pred cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 350 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 350 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
+. ...+..|.++++.+. . . . +.++++.|.++||.+.+. .+++|++++ +++++++++++|+++
T Consensus 284 --g~-~~~~~~~~~~~~~~~-~-~--~---~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~~~~~~~~~L~~~ 350 (353)
T PRK05387 284 --GF-EVLPSKANFVFARHP-S-H--D---AAELAAKLRERGIIVRHFNKPRIDQFLRITIG---TDEEMEALVDALKEI 350 (353)
T ss_pred --CC-eECCCcCcEEEEECC-C-C--C---HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 22 222344556555443 2 1 1 367889999999998764 257999765 779999999999887
Q ss_pred HH
Q psy14484 425 FN 426 (430)
Q Consensus 425 l~ 426 (430)
+.
T Consensus 351 ~~ 352 (353)
T PRK05387 351 LA 352 (353)
T ss_pred hh
Confidence 64
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=197.99 Aligned_cols=344 Identities=14% Similarity=0.105 Sum_probs=215.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~ 108 (430)
.+..++||..+.. .+. .+|++.+++.+.+..... +....+...+++.+++.+.+..+ ..++++++++|+++|+.
T Consensus 29 ~~~~~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~ 105 (393)
T PRK05764 29 QGRDVISLGAGEP--DFD-TPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALY 105 (393)
T ss_pred ccCCEEEeCCCCC--CCC-CCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHH
Confidence 3557889888753 333 478999999887764321 11112223445566666554433 45678999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.++..++. +++.|++.+++|.++........ .+...++....... ..|+
T Consensus 106 ~~~~~~~~--------~gd~vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~----------~~d~ 154 (393)
T PRK05764 106 NAFMALLD--------PGDEVIIPAPYWVSYPEMVKLAG-------------GVPVFVPTGEENGF----------KLTV 154 (393)
T ss_pred HHHHHhcC--------CCCEEEecCCCCcchHHHHHHcC-------------CEEEEEecCcccCC----------cCCH
Confidence 99887754 56789999999987643332211 12223333211000 0167
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-ccccc--CCCCC-
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH--AEIWP- 264 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~--~~~~~- 264 (430)
+++++.++ ++++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.. ..... .+...
T Consensus 155 ~~l~~~l~---~~~~~v~~~~-p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK05764 155 EQLEAAIT---PKTKALILNS-PSNPTG-AVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDR 229 (393)
T ss_pred HHHHHhhC---ccceEEEEEC-CCCCCC-cccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCC
Confidence 88888885 3566666666 677888 4566678999999999999999999999876443321 11111 12212
Q ss_pred --ceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 265 --DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 265 --d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
.+.+|||.++ .| +|+|++++++++++.+.. .....+...+++++.++...|+... .....+.++++.+
T Consensus 230 ~i~~~s~SK~~~~~G-~RiG~i~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 302 (393)
T PRK05764 230 TITVNGFSKAYAMTG-WRLGYAAGPKELIKAMSK------LQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRD 302 (393)
T ss_pred EEEEecCcccccCcc-ceeEEEecCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 2336999988 57 799999999999888764 2222344567777777776664100 1223444555555
Q ss_pred HHHHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHH
Q psy14484 340 KITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKN 412 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e 412 (430)
.+.+.|+++ +++....+.|. ++++.+. .........+.++.+.+. +.||.+.++ .+++|+++. .+++
T Consensus 303 ~l~~~L~~~---~g~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~vRis~~--~~~~ 376 (393)
T PRK05764 303 LMVDGLNEI---PGLECPKPEGAFYVFPNVS-KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGYVRLSYA--TSLE 376 (393)
T ss_pred HHHHHHhhC---CCCcccCCCcceEEEEecc-cccccccCCHHHHHHHHHHhCCEEEccccccCCCCEEEEEec--CCHH
Confidence 666666554 33333345554 4444554 321100001256777765 579999875 268899654 6899
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
++++++++|.+++.+
T Consensus 377 ~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 377 DLEEGLERIERFLES 391 (393)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998865
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=197.24 Aligned_cols=348 Identities=11% Similarity=0.048 Sum_probs=218.0
Q ss_pred EEEECCCCEEEeccccccccc--CCCCCHHHHHHHHHHHhhc--cccccCCCCCHHHHHHHHHHHhhc--------CCCC
Q psy14484 27 SLIDVSGKRYLDAISSWWVNL--FGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLT--------QYKL 94 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~--------~~~~ 94 (430)
++.+.+|+.++||..|..... + ..++.+.+++.+.+... ..+....+..++++.+++.+.+.+ ..++
T Consensus 26 ~~~~~~~~~~i~l~~g~p~~~~~~-~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~ 104 (412)
T PTZ00433 26 AKPSPSPKSIIKLSVGDPTLDGNL-LTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK 104 (412)
T ss_pred hccCCCCCCeeecCCcCCCCcCCC-CCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCCh
Confidence 344568899999998843211 2 25778899998877642 111112233455566666665432 2467
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SR 172 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 172 (430)
++|++|+|+++|+..+++++.. +++.|++..|+|..+.......+ .....++.+. .+
T Consensus 105 ~~i~it~G~~~al~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g-------------~~~~~i~~~~~~~~ 163 (412)
T PTZ00433 105 DNVVLCSGVSHAILMALTALCD--------EGDNILVPAPGFPHYETVCKAYG-------------IEMRFYNCRPEKDW 163 (412)
T ss_pred hhEEEeCChHHHHHHHHHHhcC--------CCCEEEEccCCcccHHHHHHHcC-------------CEEEEEecCccccC
Confidence 8999999999999999998764 66889999999988744433322 2223343321 11
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
.. |+++|++.+. .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..|...+
T Consensus 164 ~~------------d~~~l~~~~~---~~~~~i~~~~-p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 164 EA------------DLDEIRRLVD---DRTKALIMTN-PSNPCG-SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG 226 (412)
T ss_pred cC------------CHHHHHHHhc---cCceEEEEeC-CCCCCC-cccCHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 11 7888888775 3566677766 778888 55677889999999999999999999999875443
Q ss_pred ccc-ccccCC-CCCce--eeeecccCC-CccccEEEEE------cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 253 KFF-ACEHAE-IWPDF--LCLSKGITG-GYLPLSLVMT------TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 253 ~~~-~~~~~~-~~~d~--~~~sK~l~g-G~~~ig~~~~------~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
..+ ....+. ..+-+ -+|||.++. | +|+|++++ .+++.+.+.. . ...+++.+.+++.++.++
T Consensus 227 ~~~~~~~~~~~~~~~i~~~SfSK~~~~pG-lRlG~~i~~~p~~~~~~~~~~~~~------~-~~~~~~~~~~~q~a~~~~ 298 (412)
T PTZ00433 227 ATFTSVADFDTTVPRVILGGTAKNLVVPG-WRLGWLLLVDPHGNGGDFLDGMKR------L-GMLVCGPCSVVQAALGEA 298 (412)
T ss_pred CCccchhhccCCCceEEEccchhhcCCCC-eeEEEEEEeCCcccHHHHHHHHHH------H-hhccCCCChHHHHHHHHH
Confidence 221 111111 11222 279999854 6 89999997 2456555543 1 122356677877777766
Q ss_pred HHHH-h--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEee
Q psy14484 322 LEIF-N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRP 396 (430)
Q Consensus 322 l~~~-~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~ 396 (430)
+..- + -++..+.+++..+.+.+.|++. ..+....++ |.++++.+. ...........++++.|+ ++||.+.|
T Consensus 299 l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~p~gg~f~~~~l~-~~~~~~~~~~~~~~~~ll~~~gV~v~p 374 (412)
T PTZ00433 299 LLNTPQEHLEQIVAKLEEGAMVLYNHIGEC---IGLSPTMPRGSMFLMSRLD-LEKFRDIKSDVEFYEKLLEEENVQVLP 374 (412)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcccCCCeeEEEEEEec-hhhcCCCCCHHHHHHHHHHhcCEEEeC
Confidence 6420 0 1223334444455555555432 223333444 555666665 311000000357888887 57999998
Q ss_pred c-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 397 I-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+ .+++|++++ ..++++++++++|.+++..
T Consensus 375 g~~f~~~~~iRis~~--~~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 375 GEIFHMPGFTRLTIS--RPVEVLREAVERIKAFCER 408 (412)
T ss_pred ccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 6 368999776 4588999999999998864
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-23 Score=196.96 Aligned_cols=330 Identities=12% Similarity=0.021 Sum_probs=205.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~ 109 (430)
.|+.++||..| ...++ .++.+.+++.+.......+....+..++++.+++.+.+.++ .++++|++|+|+++|+..
T Consensus 22 ~~~~~i~l~~~--~p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~ 98 (374)
T PRK05839 22 KEYKGLDLTIG--EPQFE-TPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN 98 (374)
T ss_pred CCCCeEEcCCC--CCCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence 47899999887 45566 36788888887654433333333445677788888877654 578899999999999988
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++++++.. ++++.|++..|+|..+.......+ .++..++.+...... .|++
T Consensus 99 ~~~~~~~~------~~gd~vlv~~P~y~~~~~~~~~~g-------------~~v~~v~~~~~~~~~----------~d~~ 149 (374)
T PRK05839 99 FPQFVLFD------KQNPTIAYPNPFYQIYEGAAIASR-------------AKVLLMPLTKENDFT----------PSLN 149 (374)
T ss_pred HHHHHhcC------CCCCEEEECCCCchhhHHHHHhcC-------------CEEEEeecccccCCc----------CCcc
Confidence 87766421 156789999999988754433222 222333332111110 0222
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccC---C--CC
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHA---E--IW 263 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~---~--~~ 263 (430)
+. .+ .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.... .... + ..
T Consensus 150 ~~--~~----~~~k~v~i~n-P~NPTG-~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~ 221 (374)
T PRK05839 150 EK--EL----QEVDLVILNS-PNNPTG-RTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESF 221 (374)
T ss_pred hh--hh----ccccEEEEeC-CCCCcC-cccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCcccc
Confidence 21 22 2356666656 788888 556788899999999999999999999997743222111 1110 0 01
Q ss_pred Cc---eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy14484 264 PD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 339 (430)
Q Consensus 264 ~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~ 339 (430)
+. +-+|||.++. | +|+|++++++++++.+.. .....++..+.+.+.++.+++. .+++.+.+++.-+
T Consensus 222 ~~vi~~~SfSK~~~~~G-lRiG~ii~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~~~~~ 291 (374)
T PRK05839 222 KNVLVINSISKRSSAPG-LRSGFIAGDASILKKYKA------YRTYLGCASPLPLQKAAAVAWL---DDEHAEFFRNIYA 291 (374)
T ss_pred CcEEEEeccccccCCcc-ceeEEEecCHHHHHHHHH------HHhhcCCCCChHHHHHHHHHhc---cchHHHHHHHHHH
Confidence 23 3379998754 5 899999999998887764 1112234455566666655553 2334333332222
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec---------CCEEEEeCCCCC
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI---------GNTVYLMPPYIL 409 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~---------~~~lR~~~~~~~ 409 (430)
..++.+.+. ++. . .+..|.++++.+. + ..++++.|.+ +||.+.|+ .+++|++.+ .
T Consensus 292 ~~~~~~~~~--l~~-~-~p~gg~fi~~~~~-~--------~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~--~ 356 (374)
T PRK05839 292 KNLKLAREI--LGI-T-IPPATFYVWLPVD-N--------DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALV--Y 356 (374)
T ss_pred HHHHHHHHh--cCC-C-CCCeeEEEEEeCC-C--------hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEec--C
Confidence 222323222 111 1 2334566666654 2 2468888865 89999884 268999764 4
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~ 426 (430)
+++++.+++++|.++++
T Consensus 357 ~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 357 DTPKLEKALEIIKTYLE 373 (374)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 79999999999988764
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=197.87 Aligned_cols=338 Identities=15% Similarity=0.127 Sum_probs=212.5
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~a 110 (430)
..++||..+ ...++. ++.+.+++.+.+.... .+....+..++.+.+++.+.+.+ +.++++|++|+|+++|+..+
T Consensus 33 ~~~i~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~ 109 (391)
T PRK08361 33 ENVISLGIG--EPDFDT-PKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA 109 (391)
T ss_pred cCeEEcCCC--CCCCCC-CHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH
Confidence 457888776 344553 6788888888765421 11122233355566666665443 35678999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++.++. +++.|++.+++|.++...... .+ .+...++.+...... .|+++
T Consensus 110 ~~~l~~--------~g~~Vlv~~p~y~~~~~~~~~-~g------------~~~~~v~~~~~~~~~----------~d~~~ 158 (391)
T PRK08361 110 FESLLE--------EGDEVIIPDPAFVCYVEDAKI-AE------------AKPIRIPLREENEFQ----------PDPDE 158 (391)
T ss_pred HHHhcC--------CCCEEEEcCCCCcccHHHHHH-cC------------CEEEEEecCCccCCC----------CCHHH
Confidence 987754 567899999999876432222 11 122333332211000 17889
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccCCCCCc--ee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAEIWPD--FL 267 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~~~~~d--~~ 267 (430)
+++.+. .+++++++.. ++|++| ...+.+.+++|.++|+++++++|+||+|..+...+.. ..........+ +.
T Consensus 159 l~~~i~---~~~~~v~i~~-p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~ 233 (391)
T PRK08361 159 LLELIT---KRTRMIVINY-PNNPTG-ATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILAN 233 (391)
T ss_pred HHHhcc---cccEEEEEeC-CCCCCC-cCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEe
Confidence 988886 3566777776 788888 4566778899999999999999999999876433221 11111111122 23
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMKKIT 342 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~ 342 (430)
+|||.++ .| +|+|++++++++++.+.. .....+++.+.+.+.++..+|+.-.. +...+.++++.+.+.
T Consensus 234 s~SK~~~~~G-lRiG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 306 (391)
T PRK08361 234 SFSKTFAMTG-WRLGFVIAPEQVIKDMIK------LHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVL 306 (391)
T ss_pred cCchhcCCcH-hhhhhhccCHHHHHHHHH------HHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHH
Confidence 7899997 56 899999999988877654 11223445566666666666642111 122333444455555
Q ss_pred HHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNE 413 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~e~ 413 (430)
+.|+.+ +.+....+.|.+ +++.+. .... . ..++.+.|+ ++||.+.|+ .+++|++.+ .++++
T Consensus 307 ~~L~~~---~~~~~~~p~g~~~~~~~l~-~~~~-~---~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~ 376 (391)
T PRK08361 307 KRLKEM---PHIKVFEPKGAFYVFANID-ETGM-S---SEDFAEWLLEKARVVVIPGTAFGKAGEGYIRISYA--TSKEK 376 (391)
T ss_pred HHHHhC---CCCeecCCCEEEEEEEECC-CCCC-C---HHHHHHHHHHhCCEEEcCchhhCCCCCCEEEEEec--CCHHH
Confidence 555543 333334455554 444554 3111 1 256777776 479999874 257899766 57889
Q ss_pred HHHHHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQTFNE 427 (430)
Q Consensus 414 i~~~~~~l~~~l~~ 427 (430)
+++++++|++++++
T Consensus 377 l~~al~~l~~~l~~ 390 (391)
T PRK08361 377 LIEAMERMEKALEE 390 (391)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998865
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=196.19 Aligned_cols=335 Identities=10% Similarity=0.000 Sum_probs=211.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.+..++||..+. +-...+|.+.+++.+.+..... +....+..++++++++.+.+.++ .+++ +|++|+|++++
T Consensus 30 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~ 106 (389)
T PRK08068 30 EGHDVINLGQGN---PDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAG 106 (389)
T ss_pred cCCCeEEecCCC---CCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHH
Confidence 455688988762 3334578899999887764321 11223334566667666655444 4667 79999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++.+... +++.|++.+|+|..+.......+. ....++....... .-
T Consensus 107 l~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~i~~~~~~~~----------~~ 155 (389)
T PRK08068 107 LVELPQCLMN--------PGDTILVPDPGYPDYLSGVALARA-------------QFETMPLIAENNF----------LP 155 (389)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-------------EEEEeecccccCC----------CC
Confidence 9998887664 668899999999877544332221 2223333211000 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-c-cccccCCCC-
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-F-FACEHAEIW- 263 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~-~~~~~~~~~- 263 (430)
|++++++.+. .+++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+. . ......+..
T Consensus 156 d~~~l~~~~~---~~~~~v~l~~-P~NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~ 230 (389)
T PRK08068 156 DYTKIPEEVA---EKAKLMYLNY-PNNPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKD 230 (389)
T ss_pred CHHHHHHhcc---ccceEEEEEC-CCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccC
Confidence 6788888775 3456666665 678888 667888899999999999999999999987655442 1 111222222
Q ss_pred --CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 264 --PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 264 --~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
..+.+|||.++ .| +|+|++++++++++.+.. .......+..+..+.++.+++.... -+...+.++++.
T Consensus 231 ~~i~~~S~SK~~g~~G-lRiG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r 303 (389)
T PRK08068 231 VGIELYTLSKTFNMAG-WRVAFAVGNESVIEAINL------LQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRR 303 (389)
T ss_pred CEEEEecchhccCCcc-ceeEeEecCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 22347999996 46 899999999999888765 1111122333344555555553111 123445556666
Q ss_pred HHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+.+.+.|+++ + +...++.|.+ +++.+. ... . +.++++.|++ +||.+.|+ .+++||+++ .
T Consensus 304 ~~~~~~L~~~---g-~~~~~~~g~~~~~v~~~-~~~--~---~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi~~~--~ 371 (389)
T PRK08068 304 NAFISACREI---G-WEVDAPKGSFFAWMPVP-KGY--T---SEQFADLLLEKAHVAVAPGNGFGEHGEGYVRVGLL--T 371 (389)
T ss_pred HHHHHHHHHC---C-CcccCCCeeEEEEEECC-CCC--C---HHHHHHHHHHhCCEEEecchHhCccCCCeEEEEEc--C
Confidence 6666666554 2 2223455655 566665 321 1 3679999886 59999874 258899775 5
Q ss_pred CHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQT 424 (430)
Q Consensus 410 t~e~i~~~~~~l~~~ 424 (430)
+++.+.+++++|.++
T Consensus 372 ~~~~l~~al~~l~~~ 386 (389)
T PRK08068 372 DEERLREAVERIGKL 386 (389)
T ss_pred CHHHHHHHHHHHHHh
Confidence 678888888888753
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=198.17 Aligned_cols=322 Identities=13% Similarity=0.088 Sum_probs=209.0
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
+..++||..| .+++| .+|.+.+++.+...... .|+...-.++++.+++.++.++++|++|+|+++++..+++
T Consensus 35 ~~~~i~l~~~--~~~~~-~~~~~~~al~~~~~~~~-----~Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 35 VPRIAKLGSN--ENPLG-PSPAVRRAFADIAELLR-----LYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICR 106 (371)
T ss_pred CcceEEcCCC--CCCCC-CCHHHHHHHHHHHHHhh-----cCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHH
Confidence 4478999887 56676 57888888887544322 2232222378888888887788899999999999998888
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++.. +++.|++..|+|.++....... ...+..++....+.. |+++++
T Consensus 107 ~~~~--------~gd~vli~~P~y~~~~~~~~~~-------------g~~~~~v~~~~~~~~------------~~~~l~ 153 (371)
T PRK05166 107 AVLR--------PGDRVVTLYPSFPLHEDYPTMM-------------GARVERVTVTPDLGF------------DLDALC 153 (371)
T ss_pred HhcC--------CCCEEEEcCCChHHHHHHHHHc-------------CCeEEEeecCCCCCC------------CHHHHH
Confidence 7754 6678999999997653322211 122233333222222 788888
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccC-CCCCce---e
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-EIWPDF---L 267 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~-~~~~d~---~ 267 (430)
+.+++ +++++++.. ++|++|. ..+.+.+++|.++|++ ++++|+||+|..|...+. ....... ...+++ -
T Consensus 154 ~~~~~---~~~~v~l~~-p~NPtG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~ 227 (371)
T PRK05166 154 AAVAR---APRMLMFSN-PSNPVGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLR 227 (371)
T ss_pred Hhhhc---CCCEEEEeC-CCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEe
Confidence 88863 445666666 7888884 5566778888888875 889999999987753221 1111111 112223 3
Q ss_pred eeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 344 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~ 344 (430)
+|||.++ .| +|+|++++ ++++.+.+.. ....++.+.+++.++.++|..-+ -+...+.+++..+++.+.
T Consensus 228 SfSK~~~l~G-lRiG~~i~~~~~l~~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 298 (371)
T PRK05166 228 TFSKAYGLAG-LRVGYGLVSDPELVGLLDR--------VRTPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKE 298 (371)
T ss_pred echHhhhcch-hheeeeecCCHHHHHHHHH--------hccCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6999998 67 89999776 6777777654 22345567777766766664211 122234445555566666
Q ss_pred HHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 345 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 345 l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
|+.. +. ...+..|.++++.+. .+ +.++++.|.++||.+.|+ .+++|++++ ++++.+++++
T Consensus 299 L~~~---g~-~~~p~~g~fl~~~~~-~~-------~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~---~~~~~~~l~~ 363 (371)
T PRK05166 299 LAEM---GY-RIAPSRANFLFFDAR-RP-------ASAVAEALLRQGVIVKPWKQPGFETFIRVSIG---SPEENDHFVA 363 (371)
T ss_pred HHHC---cC-eeCCCcCCEEEEeCC-CC-------HHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---CHHHHHHHHH
Confidence 6543 22 223456777766543 21 357899999999999886 268999866 6777888888
Q ss_pred HHHHHH
Q psy14484 420 AIFQTF 425 (430)
Q Consensus 420 ~l~~~l 425 (430)
.|+.++
T Consensus 364 ~l~~i~ 369 (371)
T PRK05166 364 ALDKVL 369 (371)
T ss_pred HHHHHh
Confidence 887654
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=195.02 Aligned_cols=341 Identities=13% Similarity=0.125 Sum_probs=217.5
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~ 107 (430)
|.+++||..+ .+.+..+|.+.+++.+.+.... .+..+.+..++++.+++.+.+.++ ..++ ++++|+|+++++
T Consensus 28 ~~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l 104 (395)
T PRK08175 28 GEDIIDFSMG---NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGL 104 (395)
T ss_pred CCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHH
Confidence 5788998876 3344456778888777664321 112222334566677777765533 3556 799999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++..++. +++.|++.+|+|..+.......+ .+...++.+. .. .+
T Consensus 105 ~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~--~~-----------~~ 150 (395)
T PRK08175 105 AHLMLATLD--------HGDTVLVPNPSYPIHIYGAVIAG-------------AQVRSVPLVE--GV-----------DF 150 (395)
T ss_pred HHHHHHhCC--------CCCEEEEcCCCCcchHHHHHHcC-------------CeEEEEeccc--CC-----------Cc
Confidence 988877654 56889999999987644332211 1223333321 11 03
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccCC---C
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHAE---I 262 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~~---~ 262 (430)
.++++++++....+++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+... . ....+ .
T Consensus 151 ~~~l~~~l~~~~~~~~~v~i~~-p~NPtG-~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~ 228 (395)
T PRK08175 151 FNELERAIRESYPKPKMMILGF-PSNPTA-QCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDV 228 (395)
T ss_pred HHHHHHHHhhccCCceEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccC
Confidence 6778888875434677777776 788888 66778889999999999999999999998764433211 1 11111 1
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
..-+.+|||.++ .| +|+|++++++++++.+.. ......++.+.+.+.++.++++..+ ...+.+.++++.+
T Consensus 229 ~i~~~S~SK~~g~pG-lRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 301 (395)
T PRK08175 229 AVEFFTLSKSYNMAG-WRIGFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRD 301 (395)
T ss_pred EEEEeeccccccCcc-hhheeeeCCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112347999996 46 899999999999887765 1122234455556666666664211 1223444555566
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCH
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 411 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~ 411 (430)
++.+.|+.+ +.....+..|.++++.+. .+..... +..+++.++ +.||.+.|+ .+++|++.+ .++
T Consensus 302 ~~~~~L~~~---~~~~~~p~~g~~i~i~l~-~~~~~~~--~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRis~~--~~~ 373 (395)
T PRK08175 302 VLVKGLHEA---GWMVEMPKASMYVWAKIP-EPYAAMG--SLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALI--ENR 373 (395)
T ss_pred HHHHHHHHc---CCcccCCCEEEEEEEECC-cccCCCC--HHHHHHHHHHhCCEEEeCchhhCcCCCCeEEEEeC--CCH
Confidence 666666554 221112334777777776 4321111 356887765 679999885 257999764 688
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTFNE 427 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~ 427 (430)
+.+.+++++|.+++.+
T Consensus 374 ~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 374 DRIRQAIRGIKAMFRA 389 (395)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998875
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-24 Score=201.91 Aligned_cols=309 Identities=13% Similarity=0.142 Sum_probs=205.1
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
..+|+.+| .+++| .+|.+. ... ...|+.....++++++++.++.++++|++++|++|++..+++++
T Consensus 29 ~~~~l~~N--enp~~-~~~~~~------~~~-----~~~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~ 94 (351)
T PRK01688 29 GDVWLNAN--EYPTA-VEFQLT------QQT-----LNRYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAF 94 (351)
T ss_pred CceEecCC--CCCCC-CChhhc------ccc-----cccCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh
Confidence 35888777 67777 334321 111 12466666679999999999889999999999999999999877
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
.. ++++.|++.+|+|..+...+...+ .+...++.+.++.. |+++++++
T Consensus 95 ~~-------~g~~~vli~~P~y~~y~~~~~~~G-------------~~~~~v~~~~~~~~------------d~~~l~~~ 142 (351)
T PRK01688 95 CE-------PGKDAILYCPPTYGMYSVSAETIG-------------VEIRTVPTLDNWQL------------DLPAIADN 142 (351)
T ss_pred cC-------CCCCEEEEcCCCHHHHHHHHHHcC-------------CEEEEeecCCCCCC------------CHHHHHHh
Confidence 54 134789999999976643322211 22234444332222 78888877
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---eeec
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSK 271 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~sK 271 (430)
+. +++++++.. ++|++| ...+.+.+++|.+.|++ ++++|+||+|..|....+. .......++++ ||||
T Consensus 143 ~~----~~~lv~l~n-PnNPTG-~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s~--~~~~~~~~n~iv~rSfSK 213 (351)
T PRK01688 143 LD----GVKVVYVCS-PNNPTG-NLINPQDLRTLLELTRG-KAIVVADEAYIEFCPQASL--AGWLAEYPHLVILRTLSK 213 (351)
T ss_pred cc----CCcEEEEeC-CCCCCC-CCCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCCh--HHHHhhCCCEEEEecchH
Confidence 62 455555555 778888 45667778888888876 6899999999887422111 11112234433 7999
Q ss_pred ccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h-hcCHHHHHHHHHHHHHHHHHc
Q psy14484 272 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N-KDNILQRISQDMKKITKALTS 347 (430)
Q Consensus 272 ~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~--~-~~~~~~~~~~~~~~l~~~l~~ 347 (430)
.++ .| +|+|++++++++++.+.. ....|+.+.+++.++.++|+.. + -.+..+.+.+..+++.+.|+.
T Consensus 214 ~~glaG-lRiGy~i~~~~~i~~l~~--------~~~~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 284 (351)
T PRK01688 214 AFALAG-LRCGFTLANEEVINLLLK--------VIAPYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKE 284 (351)
T ss_pred hhcCHH-HHHhHHhCCHHHHHHHHh--------ccCCCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 987 46 899999999999888876 2334566767666676666421 0 112234445555666666655
Q ss_pred hhcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 348 LITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 348 l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+ +.+. ..+..++|+.+.+. + +.++.+.|+++||.++++ .+++|+++. ++++++.++++
T Consensus 285 ~---~~~~~~~ps~~nfi~~~~~-~--------~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~---~~~e~~~l~~a 349 (351)
T PRK01688 285 I---PCVEQVFDSETNYILARFT-A--------SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG---TREECQRVIDA 349 (351)
T ss_pred C---CCCCeECCCCCcEEEEEcC-C--------HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC---CHHHHHHHHHh
Confidence 4 3322 23455777766554 2 367999999999999864 268999876 78999999988
Q ss_pred HH
Q psy14484 421 IF 422 (430)
Q Consensus 421 l~ 422 (430)
|+
T Consensus 350 l~ 351 (351)
T PRK01688 350 LR 351 (351)
T ss_pred hC
Confidence 73
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=195.66 Aligned_cols=334 Identities=11% Similarity=0.041 Sum_probs=210.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.|..++|+..| ...++ .+|.+.+++.+.+.... .+....+..++++.+++.+.+.++ .+++ .|++|+|++++
T Consensus 29 ~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 29 RGVDVISLGIG--DPDLP-TPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred cCCCEEEecCC--CCCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 45568898887 33443 46788999988775421 111112233556667776665543 3455 58999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++++++. +++.|++.+|+|.++.......+. ....++........ .
T Consensus 106 i~~~~~~~~~--------~gd~Vl~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~g~~----------~ 154 (385)
T PRK09276 106 IAHIPLAFVN--------PGDVVLVPDPGYPVYKIGTIFAGG-------------EPYFMPLKEENGFL----------P 154 (385)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcChHHHHHHcCC-------------EEEEEecCCCCCCc----------C
Confidence 9999988764 678899999999877543332221 22233332110110 1
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccC---C
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHA---E 261 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~---~ 261 (430)
|++++++.+. .+++++++++ ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+... . .... +
T Consensus 155 d~~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T PRK09276 155 DLDAIPEDVA---KKAKLMFINY-PNNPTG-AVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKD 229 (385)
T ss_pred CHHHHHHhcc---ccceEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcC
Confidence 6788877764 4567777776 788888 55678889999999999999999999998774433211 1 1111 1
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
....+.+|||.++ .| +|+|++++++++++.+.. .......+.+.+.+.++.++|+..+ -+...+.++++.
T Consensus 230 ~~i~~~S~SK~~g~~G-lRiG~~i~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 302 (385)
T PRK09276 230 VGIEFHSLSKTYNMTG-WRIGFAVGNADLIAGLGK------VKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERR 302 (385)
T ss_pred CEEEEecchhhcCCcc-hhheeeeCCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 2233458999996 46 899999999999888765 1111222345556666666664211 122344455556
Q ss_pred HHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+++.+.|++. . +....+.|.+ +++.+. ... . ..++++.|+ ++||.+.|+ .+++||+++ .
T Consensus 303 ~~l~~~L~~~---~-~~~~~~~~~~~~~v~~~-~~~--~---~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~ 370 (385)
T PRK09276 303 DILVEGLRKL---G-LEVEPPKATFYVWAPVP-KGY--T---SAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIALT--V 370 (385)
T ss_pred HHHHHHHHhC---C-CcccCCCcceEEEEECC-CCC--C---HHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEeC--C
Confidence 6666666553 2 2222344444 555554 321 1 356888876 579999885 258999765 5
Q ss_pred CHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQ 423 (430)
Q Consensus 410 t~e~i~~~~~~l~~ 423 (430)
+++++.+++++|.+
T Consensus 371 ~~~~l~~~l~~l~~ 384 (385)
T PRK09276 371 PDERIEEAVERIKK 384 (385)
T ss_pred CHHHHHHHHHHHhh
Confidence 78888888888754
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=195.44 Aligned_cols=340 Identities=9% Similarity=0.019 Sum_probs=218.5
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccc-cCCC-----CCHHHHHHHHHHHhhcCC-CCCeEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-LSNL-----THKPVIKLSEKLSSLTQY-KLGHCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgte 105 (430)
+..|+|..+. |..++.+.+++.+.+....... ...+ ..+..+++++.+++.++. ++++|+|++|+++
T Consensus 23 ~~iYld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCccc------ccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHH
Confidence 4589996653 3357889999988876532111 1011 124566888899999975 5689999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++..+++.+.... ..+++.||+.+..||......... ......++..++.+.+...
T Consensus 97 ~l~~~~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~---------~~~~g~~v~~v~~~~~~~~----------- 152 (406)
T PRK09295 97 GINLVANSWGNSN----VRAGDNIIISEMEHHANIVPWQML---------CARVGAELRVIPLNPDGTL----------- 152 (406)
T ss_pred HHHHHHHHhhhhc----CCCcCEEEECcchhhHHHHHHHHH---------HHHcCcEEEEEecCCCCCC-----------
Confidence 9998887642100 014578888877776542111110 0111223344544332222
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|+++|++++. +++++|++.. ++|++|.+.| +++|.++|+++|+++++|++|+ ++.. ...+ ....+|
T Consensus 153 -d~~~l~~~i~---~~t~lv~l~~-~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~--~~~~~D 218 (406)
T PRK09295 153 -QLETLPALFD---ERTRLLAITH-VSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHH--PVDV--QALDCD 218 (406)
T ss_pred -CHHHHHHhcC---CCcEEEEEec-chhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCcc--ccCc--hhcCCC
Confidence 7889988885 4678888888 9999999988 9999999999999999999996 4432 1222 234578
Q ss_pred eeeee--cccCCCccccEEEEEcHHHHHhhhcc--CCc--cc--ccc----------cCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 266 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNI--NI--FLH----------SHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 266 ~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~~~--~~--~~~----------~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
++++| |.++. ..+|++++++++.+.+... +.. .. ... ..+-+.+..+..+..++++++.+
T Consensus 219 ~~~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~ 296 (406)
T PRK09295 219 FYVFSGHKLYGP--TGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA 296 (406)
T ss_pred EEEeehhhccCC--CCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 88766 95443 3589999999887654321 000 00 000 00113456677777788877654
Q ss_pred ---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------
Q psy14484 328 ---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 397 (430)
Q Consensus 328 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------- 397 (430)
+...++.+++.+++.+.|+++........ ..+..++.+.+. .. . ...+.+.|.++||.++.+
T Consensus 297 ~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~iv~~~~~-~~----~--~~~~~~~L~~~gI~v~~g~~c~~~~ 368 (406)
T PRK09295 297 LGLNNIAEYEQNLMHYALSQLESVPDLTLYGP-QNRLGVIAFNLG-KH----H--AYDVGSFLDNYGIAVRTGHHCAMPL 368 (406)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC-CCCceEEEEEEC-Cc----C--HHHHHHHHHhCCeEEeccccchHHH
Confidence 34556777788888888776522211111 122445666554 21 1 246777888999988653
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 ------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 ------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
++.+|+++++.+|++||+.++++|+++..
T Consensus 369 ~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 369 MAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 24799999999999999999999988643
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=194.13 Aligned_cols=303 Identities=11% Similarity=0.093 Sum_probs=198.6
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
..+++|+.+| .+++|...+.+.+ ..+.. ++... .+|++.+++.+ +.++|++|+|+++|+..++.
T Consensus 19 ~~~~i~l~~n--e~p~~~~~~~~~~---~~~~~--------yp~~~-~~Lr~~ia~~~--~~~~I~it~Gs~~al~~~~~ 82 (330)
T PRK05664 19 LADWLDLSTG--IAPWPWPVPAIPA---DAWAR--------LPETD-DGLEAAARAYY--GAPQLLPVAGSQAAIQALPR 82 (330)
T ss_pred HHHheeecCC--cCCCCCCCcccCH---HHHHh--------CCCCh-HHHHHHHHHHh--CCCCEEECcCHHHHHHHHHH
Confidence 3467898888 5788876554432 12222 22222 57788888888 56899999999999987753
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+ . +++.|++.+|+|.++.......+. + .+++| +++++
T Consensus 83 ~--~--------~gd~v~v~~P~y~~~~~~~~~~g~-------------~--~~~v~------------------~~~~~ 119 (330)
T PRK05664 83 L--R--------APGRVGVLSPCYAEHAHAWRRAGH-------------Q--VRELD------------------EAEVE 119 (330)
T ss_pred c--c--------CCCEEEEcCCChHHHHHHHHHcCC-------------e--EEEec------------------hhhHh
Confidence 1 1 567899999999887544333222 2 22222 23455
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---eeee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLCL 269 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~~ 269 (430)
+.++ ....+++++| +|++| ...+.+.+++|.++|+++|+++|+||+|.++....+.... .-.++ +-+|
T Consensus 120 ~~~~---~~~~v~l~nP--~NPTG-~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~---~~~~~vi~~~Sf 190 (330)
T PRK05664 120 AALD---SLDVLVVVNP--NNPTG-RRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAAC---AHRPGLIVLRSF 190 (330)
T ss_pred hhhc---CCCEEEEeCC--cCCCC-CccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccccccc---ccCCCEEEEeec
Confidence 5553 2224566666 47788 4567777999999999999999999999866422221111 11233 3379
Q ss_pred ecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHc
Q psy14484 270 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTS 347 (430)
Q Consensus 270 sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~ 347 (430)
||.++ .| +|+|++++++++++.+.. ...++..+.+++.++.++|+... .....+.++++.+++.+.|++
T Consensus 191 SK~~gl~G-lRiG~~v~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 261 (330)
T PRK05664 191 GKFFGLAG-ARLGFVLAEPALLRALAE--------LLGPWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR 261 (330)
T ss_pred cccccCCC-cceEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 67 899999999999888775 23345567777777777775221 123455566666667776665
Q ss_pred hhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 348 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 348 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+ .. ....+.++++++... + +..+.+.|.++||.+... .+++|++++. +++++++++++|++..
T Consensus 262 ~---~~-~~~~~~~~f~~~~~~-~--------~~~~~~~l~~~gi~v~~f~~~~~iRis~~~--~~~~~~~l~~al~~~~ 326 (330)
T PRK05664 262 H---GL-TPAGGCALFQWVRTE-D--------AAALHEFLARRGILTRLFEQPASLRFGLPA--DEADWARLDQALLAYR 326 (330)
T ss_pred C---CC-cccCCcceEEEEecC-C--------HHHHHHHHHHCCeEEEECCCCCeEEEECCC--CHHHHHHHHHHHHHHH
Confidence 4 21 111222344444332 1 367889999999999875 3789997663 6788999999998776
Q ss_pred HH
Q psy14484 426 NE 427 (430)
Q Consensus 426 ~~ 427 (430)
.+
T Consensus 327 ~~ 328 (330)
T PRK05664 327 KE 328 (330)
T ss_pred hh
Confidence 55
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=196.28 Aligned_cols=334 Identities=11% Similarity=0.057 Sum_probs=209.1
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
|+|..+. +..++.|.+++.+.+........... .....+++++.+++++++++++|+|++|+++++..+
T Consensus 2 yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~a 75 (379)
T TIGR03402 2 YLDNNAT------TRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTA 75 (379)
T ss_pred cCCCcCC------CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHH
Confidence 5665443 34578999999988764211111011 123456888999999988888999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++.+.... ++++.|++.+..|+........ ......++..++.+..... |+++
T Consensus 76 l~~~~~~~-----~~~~~vv~~~~~~~s~~~~~~~----------~~~~G~~v~~v~~~~~g~~------------~~~~ 128 (379)
T TIGR03402 76 IKSALAAQ-----PEKRHIITTAVEHPAVLSLCQH----------LEKQGYKVTYLPVDEEGRL------------DLEE 128 (379)
T ss_pred HHHHHHhc-----CCCCeEEEcccccHHHHHHHHH----------HHHcCCEEEEEccCCCCcC------------CHHH
Confidence 98775321 1445666555555432111111 0011223344544322222 7899
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s 270 (430)
+++.++ +++.+++++. +++++|...| +++|.++|+++|+++|+|++|+ +|.. .++.....+|++++|
T Consensus 129 l~~~i~---~~~~lv~i~~-~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~----~~~~~~~~~D~~~~s 195 (379)
T TIGR03402 129 LRAAIT---DDTALVSVMW-ANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI----PIDLKEMNIDMLSLS 195 (379)
T ss_pred HHHhcC---CCcEEEEEEc-ccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc----ccCcccCCCCEEEEc
Confidence 998885 4678888888 8999998888 8999999999999999999997 5422 223334567999988
Q ss_pred --cccCCCccccEEEEEcHHHHHhhhcc---CCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHH
Q psy14484 271 --KGITGGYLPLSLVMTTDKIYNSIYYK---NNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITK 343 (430)
Q Consensus 271 --K~l~gG~~~ig~~~~~~~~~~~~~~~---~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~ 343 (430)
| +.|. ..+|+++++++.. +.+. +........+ +.+..+..+..++++++.+ +...++.+++.+++++
T Consensus 196 ~~K-~~gp-~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~g--t~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~ 269 (379)
T TIGR03402 196 GHK-LHGP-KGVGALYIRKGTR--FRPLLRGGHQERGRRAG--TENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEA 269 (379)
T ss_pred HHH-cCCC-CceEEEEECCCCC--CCCcccCCccCCCcCCC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9 5543 4589998887642 2110 0000001122 3355556666666766543 2334566667777777
Q ss_pred HHHc-hhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------
Q psy14484 344 ALTS-LITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 397 (430)
Q Consensus 344 ~l~~-l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------ 397 (430)
.|++ +.......... ....++.+.+. .. . ..++...|.++||.++.+
T Consensus 270 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~--~~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~ 342 (379)
T TIGR03402 270 GLLARIPDARLNGDPTKRLPNTVNISFE-YI----E--GEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAA 342 (379)
T ss_pred HHHhhCCCEEEeCCCccCCCCEEEEEec-CC----C--HHHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhc
Confidence 7764 32111111100 11223333333 21 1 256888888899998753
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|+++++.+|++||+++++.|+++++++
T Consensus 343 ~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 343 HGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999999999988753
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=192.78 Aligned_cols=335 Identities=13% Similarity=0.090 Sum_probs=212.6
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~ 109 (430)
..++||..+.. .++ .++.+.+++.+.+..... +....+..++++++++.+.+..+ ++++ +|++|+|+++|+..
T Consensus 28 ~~~i~l~~~~p--~~~-~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~ 104 (387)
T PRK07683 28 DNLISLTIGQP--DFP-TPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDI 104 (387)
T ss_pred CCeEEecCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHH
Confidence 45788877732 233 367888999988764211 11223334566677777765443 3667 89999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAI 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 188 (430)
+++.+.. +++.|++..++|.++.......+ .+...++.+. .+.. |.
T Consensus 105 ~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------~~ 151 (387)
T PRK07683 105 AFRTILE--------PGTEVILPAPIYPGYEPIIRLCG-------------AKPVFIDTRSTGFRL------------TA 151 (387)
T ss_pred HHHHhCC--------CCCEEEEcCCCccchHHHHHHcC-------------CEEEEeecCcccCCC------------CH
Confidence 9887754 56789999999987644433221 1223333221 1111 56
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-ccCCCCCc--
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPD-- 265 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~~~~~d-- 265 (430)
+++++.+. .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+..... ...+...+
T Consensus 152 ~~l~~~~~---~~~~~i~i~~-p~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi 226 (387)
T PRK07683 152 EALENAIT---EKTRCVVLPY-PSNPTG-VTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTI 226 (387)
T ss_pred HHHHHhcC---cCceEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeE
Confidence 78888775 3566777766 788888 5667788999999999999999999999977443322111 11121112
Q ss_pred -eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 266 -~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+.+|||.++ .| +|+|++++++++++.+.. .......+.+.+++.++.+.|+... .+...++++++.+.+
T Consensus 227 ~~~s~SK~~~~pG-lRiG~i~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (387)
T PRK07683 227 VINGLSKSHSMTG-WRIGFLFAPSYLAKHILK------VHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYV 299 (387)
T ss_pred EEeeccccccCcc-ceeEEEEcCHHHHHHHHH------HHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 337999998 57 899999999998887764 1111223345666666766664211 122334455566666
Q ss_pred HHHHHchhcCCCeeeEeecceEEEEE-EeecCCccchhHHHHHHHH-HHHCCcEEeec-------CCEEEEeCCCCCCHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAFD-VIIEDPEQIETFSKKFFVA-ALKNELLLRPI-------GNTVYLMPPYILNKN 412 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~a~~~~~~-l~~~Gv~~~~~-------~~~lR~~~~~~~t~e 412 (430)
.+.|+++ . +....+.|.++.+. +. .... . ...+... +.++||.+.|+ .+++|++.+ .+++
T Consensus 300 ~~~l~~~---~-~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~Ri~~~--~~~~ 368 (387)
T PRK07683 300 YNRLISM---G-LDVEKPTGAFYLFPSIG-HFTM-S---SFDFALDLVEEAGLAVVPGSAFSEYGEGYVRLSYA--YSIE 368 (387)
T ss_pred HHHHHHc---C-CcccCCCeeEEEEEecc-cCCC-C---HHHHHHHHHHhCCEEEcCchhhCCCCCCeEEEEec--CCHH
Confidence 6666543 2 22234555555443 33 2111 1 2356655 56779999885 268999766 4799
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
++.+++++|.+.+.+
T Consensus 369 ~~~~al~~l~~~l~~ 383 (387)
T PRK07683 369 TLKEGLDRLEAFLQQ 383 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998865
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=197.87 Aligned_cols=339 Identities=15% Similarity=0.137 Sum_probs=231.7
Q ss_pred CCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc-----ccCCCCCHHHHHHHHHHHhh--cCCCCCeEEEcCCch
Q psy14484 33 GKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV-----MLSNLTHKPVIKLSEKLSSL--TQYKLGHCFYGSDGA 104 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~--~~~~~~~v~~~~sgt 104 (430)
....+||..++... .+ ....+.+++.+.+...... ....+..++++.+++.+... ..+.+++|++|+|..
T Consensus 88 ~~~~i~f~~g~p~~--~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q 165 (459)
T COG1167 88 DPSVIDFAGGLPDP--SLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQ 165 (459)
T ss_pred CCceecCCCCCCCc--ccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHH
Confidence 36788888775222 22 3345556666555432211 22234446667777777633 346778999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+|+++.+++... +++.|++-+|+|++........+ . ..+++|.+..+.
T Consensus 166 ~al~l~~~~l~~--------pGd~v~vE~PtY~~~~~~~~~~g-------------~--~~~~vp~d~~G~--------- 213 (459)
T COG1167 166 QALDLLLRLLLD--------PGDTVLVEDPTYPGALQALEALG-------------A--RVIPVPVDEDGI--------- 213 (459)
T ss_pred HHHHHHHHHhCC--------CCCEEEEcCCCcHHHHHHHHHcC-------------C--cEEecCCCCCCC---------
Confidence 999999998876 78999999999998744333322 2 344555444444
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc----ccccC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF----ACEHA 260 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~----~~~~~ 260 (430)
|+++|++.++++ +++++.+.|..+|++| ...+.+--++|.++|++||+++|-|+.|+.+...+..- +.+..
T Consensus 214 --~~e~le~~~~~~--~~k~~y~~P~~qNPtG-~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~ 288 (459)
T COG1167 214 --DPEALEEALAQW--KPKAVYVTPTFQNPTG-VTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAP 288 (459)
T ss_pred --CHHHHHHHHhhc--CCcEEEECCCCCCCCC-CccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCC
Confidence 899999999853 7889999997888888 55666778999999999999999999999886554321 22222
Q ss_pred CCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH------
Q psy14484 261 EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI------ 334 (430)
Q Consensus 261 ~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~------ 334 (430)
+...-+-||||.+..| +|+|++++++++++.+.. ..+..+..++.+.+.+....+. +..+.+++
T Consensus 289 ~rViy~gSFSK~l~Pg-lRlG~vv~p~~~~~~~~~------~k~~~~~~~s~~~Q~~la~~l~---~G~~~~hl~~lR~~ 358 (459)
T COG1167 289 GRVIYLGSFSKTLAPG-LRLGYVVAPPELIEKLLR------LKQAADLGPSSLSQAALAAFLL---SGHYDRHLRRLRRE 358 (459)
T ss_pred CCEEEEeeehhhcccc-cceeeeeCCHHHHHHHHH------HHHHhcCCCChHHHHHHHHHHH---cCCHHHHHHHHHHH
Confidence 3333455899999999 899999999999888765 4456667777777665554443 22333333
Q ss_pred -HHHHHHHHHHHHchhcCC-CeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-c---------CCEE
Q psy14484 335 -SQDMKKITKALTSLITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-I---------GNTV 401 (430)
Q Consensus 335 -~~~~~~l~~~l~~l~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-~---------~~~l 401 (430)
+++.+.+.+.|++. .+ ..... +..|+++++.+. .... +.++.+.++++|+.+.+ + .+.+
T Consensus 359 y~~rr~~l~~~L~~~--~~~~~~~~~p~gG~flwl~l~-~~~~-----~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~ 430 (459)
T COG1167 359 YARRRDALLEALAEY--LPELATWTRPEGGLFLWLELP-EGID-----ARELLAAALEKGVVVTPLGSAFSADGDPRNGL 430 (459)
T ss_pred HHHHHHHHHHHHHHh--CCCCeeeecCCceEEEEEEcC-CCCC-----HHHHHHHHHHCCCEEEcCCccccCCCCCCCeE
Confidence 33334444444333 22 33333 334788888887 4321 36799999999999998 2 2489
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|++++ ..+++++++.+++|.+++.+..
T Consensus 431 Rl~~s-~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 431 RLSFS-SPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred EEEcC-CCCHHHHHHHHHHHHHHHHHHh
Confidence 99877 4568999999999999987653
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=196.06 Aligned_cols=330 Identities=14% Similarity=0.099 Sum_probs=211.2
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHh-hccccccCCC-CCHHHHHHHHHHHhhcC------CCCC-eEEEcCCchH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEHVMLSNL-THKPVIKLSEKLSSLTQ------YKLG-HCFYGSDGAS 105 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~~------~~~~-~v~~~~sgte 105 (430)
++|||.+| ...++.++|.+.+++.+..+ .........| ......++++.+++.+. .+.+ .+++++|..+
T Consensus 2 ~~I~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~ 79 (363)
T PF00155_consen 2 DVINLGSN--APLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQA 79 (363)
T ss_dssp TEEESSSS--STSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHH
T ss_pred CEEEEECC--CCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEeccccc
Confidence 47888887 55566667766666666544 1111111223 33345666666666664 5577 7888877777
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 183 (430)
++..++.++.. .+++.|++.+|+|.++......... ....++.. ..+.
T Consensus 80 ~~~~~~~~~~~-------~~~~~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~---------- 129 (363)
T PF00155_consen 80 ALFLLLRLLKI-------NPGDTVLVPDPCYPSYIEAARLLGA-------------EVIPVPLDSENDFH---------- 129 (363)
T ss_dssp HHHHHHHHHHS-------STTSEEEEEESSSTHHHHHHHHTTS-------------EEEEEEEEETTTTE----------
T ss_pred chhhhhhcccc-------cccccceecCCccccccccccccCc-------------eeeecccccccccc----------
Confidence 77777766631 1567899999999877444333221 12222211 1122
Q ss_pred HHHHHHHHHHHHHhC-CC--CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cc
Q psy14484 184 ARCAIFDLEILLKKN-HN--KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CE 258 (430)
Q Consensus 184 ~~~d~~~le~~l~~~-~~--~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~ 258 (430)
.|+++|++.+++. .+ ++.++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|.++......+ . ..
T Consensus 130 --~d~~~l~~~l~~~~~~~~~~~~v~~~~-p~nPtG-~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 205 (363)
T PF00155_consen 130 --LDPEALEEALDELPSKGPRPKAVLICN-PNNPTG-SVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRS 205 (363)
T ss_dssp --ETHHHHHHHHHTSHTTTETEEEEEEES-SBTTTT-BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHG
T ss_pred --ccccccccccccccccccccceeeecc-cccccc-cccccccccchhhhhcccccceeeeeceeccccCCCccCcccc
Confidence 2899999999875 22 357777777 888999 56677889999999999999999999999764432211 1 11
Q ss_pred cCCCCCc---eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----hcC
Q psy14484 259 HAEIWPD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-----KDN 329 (430)
Q Consensus 259 ~~~~~~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----~~~ 329 (430)
...-.++ +-+|||.++. | +|+|++++++++.+.+.. ....+..+.+.+.++.+.+.... -+.
T Consensus 206 ~~~~~~~vi~~~S~SK~~g~~G-lRvG~i~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 276 (363)
T PF00155_consen 206 LLDEDDNVIVVGSLSKSFGLPG-LRVGYIVAPPELIERLRR--------FQRSGLSSSPMQAAAAAALSDPELVEKWLEE 276 (363)
T ss_dssp HHTTTSTEEEEEESTTTTTSGG-GTEEEEEEEHHHHHHHHH--------HHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeccccccccc-cccccccchhhhhhhhhh--------ccccccccchhhHHHHHhhhccccccccccc
Confidence 1222233 2378999974 6 899999999999888775 22333335555555555554221 133
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEE
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVY 402 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR 402 (430)
..++++++.+++.+.|++. .+....+.+.+ ++..+. .. .+.++++.|+++ ||.+.|+ .+++|
T Consensus 277 ~~~~l~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~-~~------~~~~l~~~L~~~~gi~v~pg~~~~~~~~iR 345 (363)
T PF00155_consen 277 LRERLRENRDLLREALEEI----GITVLPPEAGFFLWVRLD-PN------DAEELAQELLEEYGILVRPGSYFGVPGYIR 345 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TSEEEHHSBSSEEEEEES-HH------HHHHHHHHHHHHHTEEEEEGGGGTSTTEEE
T ss_pred chhhHHHHHHHHHHHHHHh----hhheeeccCccEEEEEcc-cc------hHHHHHHHHHHhCCEEEEecCCCCCCCEEE
Confidence 4556666777777777654 33333333444 444444 21 246899999998 9999985 47999
Q ss_pred EeCCCCCCHHHHHHHHHHH
Q psy14484 403 LMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l 421 (430)
+++ ..++++++++++++|
T Consensus 346 i~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 346 ISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp EEG-GCSCHHHHHHHHHHH
T ss_pred EEe-ccCCHHHHHHHHhhC
Confidence 988 689999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=194.31 Aligned_cols=302 Identities=11% Similarity=0.015 Sum_probs=198.1
Q ss_pred ccCCC-CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 46 NLFGH-SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 46 ~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
++||. .||+++++..+++++++ +..+.+.++++.+++.++.+++++++++||++|+..++.++..
T Consensus 28 ~ylgl~~~~~~~~~~~~~~~~~~------g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~-------- 93 (346)
T TIGR03576 28 DLTGLAGGFKIDEEDLELLETYV------GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEP-------- 93 (346)
T ss_pred ccccCCCChhHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCC--------
Confidence 45666 59999999999988752 4568899999999999987779999999999999999988764
Q ss_pred CCcEEEEEcC--CCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 125 NKKKFICLQN--SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 125 ~~~~vl~~~~--~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++.|+++.+ -+|.+........+. ..+.++ ++++++. . +++
T Consensus 94 ~gd~Vli~~~d~p~~~s~~~~~~l~ga--------------~~~~~~-----------------~l~~l~~-~----~~~ 137 (346)
T TIGR03576 94 PGRKVVHYLPEKPAHPSIPRSCKLAGA--------------EYFESD-----------------ELSELKK-I----DGT 137 (346)
T ss_pred CCCEEEECCCCCCCchhHHHHHHHcCC--------------EEeccC-----------------CHHHHhh-C----cCc
Confidence 5667776422 344443333333321 111111 4444332 1 345
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC--CcccccccccCCCCCce--eeeecccCCCcc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG--RTGKFFACEHAEIWPDF--LCLSKGITGGYL 278 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g--~~g~~~~~~~~~~~~d~--~~~sK~l~gG~~ 278 (430)
++|++++ . ++.|.+ .+.+.|++|.++|+++|+++++||+|..+. ..|.. .....+ +|+ .+|||+++| +
T Consensus 138 ~lIiitg-~-s~~G~v-~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~-~~~~~~--~divv~s~SKalaG--~ 209 (346)
T TIGR03576 138 SLVVITG-S-TMDLKV-VSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQP-PALDLG--ADLVVTSTDKLMDG--P 209 (346)
T ss_pred eEEEEEC-C-CCCCcc-cCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCC-CHHHcC--CcEEEeccchhccc--c
Confidence 6677766 4 556644 346779999999999999999999997321 11211 111222 354 478998865 6
Q ss_pred ccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEe
Q psy14484 279 PLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR 358 (430)
Q Consensus 279 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 358 (430)
++|++++++++++.+.. ......++.+++.++++.++|+.+..+...+.++++.+.+.+.++.+ ... +
T Consensus 210 r~G~v~~~~~li~~l~~------~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~~~---~~~---~ 277 (346)
T TIGR03576 210 RGGLLAGRKELVDKIKS------VGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKL---NVE---R 277 (346)
T ss_pred ceEEEEeCHHHHHHHHH------hhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhC---CCC---c
Confidence 89999999999988876 11222333577788888888875433445566666766666666543 211 1
Q ss_pred ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHH---HHHHHHHHHHHHH
Q psy14484 359 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKN---EIQHMTSAIFQTF 425 (430)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e---~i~~~~~~l~~~l 425 (430)
..+.|+++.+. ... . .+...+.|.++||.+.|+ ++++||++. ..++ +++.++++|++.+
T Consensus 278 ~~~~f~~~~~~-~~~--~---~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~--~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 278 TPTGFVIKGVE-EEK--L---IEIGLDLLRNYGIITITAVGMPGASKTLRFDLA--AKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred CCCeEEEEeCC-CCC--H---HHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEe--cChHHhcCHHHHHHHHHhcc
Confidence 23346655554 210 1 134456667889999984 368999755 3333 7999999998764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=193.55 Aligned_cols=334 Identities=12% Similarity=0.043 Sum_probs=211.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.|..++||..|. ..++ .+|.+.+++.+.+.... .+....+..++++.+++.+.+.++ ...+ +|++|+|++++
T Consensus 27 ~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~ 103 (383)
T TIGR03540 27 EGVDVISLGIGD--PDLP-TPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEG 103 (383)
T ss_pred cCCCeEEeCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHH
Confidence 466788988873 4455 36788899888765421 111112233566677777765543 2445 68999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..+++++.. +++.|++.+|+|.++.......+. .+..++....... ..
T Consensus 104 l~~~~~~~~~--------~gd~vlv~~P~y~~~~~~~~~~G~-------------~v~~v~~~~~~g~----------~~ 152 (383)
T TIGR03540 104 IAHIPLAFVN--------PGDIVLVPDPGYPVYRIGTLFAGG-------------EPYEMPLKEENGF----------LP 152 (383)
T ss_pred HHHHHHHhCC--------CCCEEEEeCCCCcchHHHHHhcCC-------------EEEEEecCcccCC----------cc
Confidence 9999988764 678899999999887544333222 2223333211000 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-ccc-ccC---C
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHA---E 261 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~-~~~---~ 261 (430)
|++++++.+. .+++++++.. ++|++| ..++.+.+++|.++|++||+++|+||+|..+...+.. ..+ ... .
T Consensus 153 d~~~l~~~~~---~~~~~v~i~~-P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~ 227 (383)
T TIGR03540 153 DFDAIPEDIA---KKAKLMFINY-PNNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKD 227 (383)
T ss_pred CHHHHHhhcc---ccceEEEEeC-CCCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCccc
Confidence 7788887775 3567777776 778888 6678888999999999999999999999876543321 111 111 1
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
....+.+|||.++ .| +|+|++++++++++.+.. .......+.+.+.+.++.++|+... -+...+.++++.
T Consensus 228 ~~i~~~SfSK~~g~~G-lRiG~~i~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 300 (383)
T TIGR03540 228 VGIEFHSLSKTYNMTG-WRIGMAVGNADLIAGLGK------VKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRR 300 (383)
T ss_pred CEEEEEecccccCCcc-ceeeEEeCCHHHHHHHHH------HHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 1233458999996 46 899999999999887764 1111223445566666666664211 022344455556
Q ss_pred HHHHHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+.+.+.|++. . +....+.|. ++++.+. +.. . +.++++.|+ ++||.+.++ .+++||+++ .
T Consensus 301 ~~~~~~L~~~---~-~~~~~~~~~~~~~~~l~-~~~--~---~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~~--~ 368 (383)
T TIGR03540 301 DLLLEALKKI---G-IDVEKPKATFYVWVPVP-EGY--T---SAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLT--V 368 (383)
T ss_pred HHHHHHHHhC---C-CEecCCCcceEEEEECC-CCC--C---HHHHHHHHHHHCCEEEecchhhCccCCCeEEEEec--C
Confidence 6666666543 2 222333444 4556554 321 1 356888875 679999975 257999775 5
Q ss_pred CHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQ 423 (430)
Q Consensus 410 t~e~i~~~~~~l~~ 423 (430)
+++++.+.+++|++
T Consensus 369 ~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 369 PDERLEEAVARIKK 382 (383)
T ss_pred CHHHHHHHHHHHhh
Confidence 78888888888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-22 Score=193.43 Aligned_cols=337 Identities=9% Similarity=0.054 Sum_probs=214.6
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~ 109 (430)
...+||..|.. .++ .+|.+.+++.+.+... ..+....+..++++.+++.+.+.++ .+++ +|++|+|+++|+..
T Consensus 26 ~~~i~l~~g~p--~~~-~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~ 102 (387)
T PRK08912 26 HGAINLGQGFP--DDP-GPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAA 102 (387)
T ss_pred CCeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHH
Confidence 46788888753 344 3678888888766432 1122222334566777777765543 4666 89999999999998
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAI 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 188 (430)
++..... +++.|++.+++|..+.......+ .....++.+. .+.. |+
T Consensus 103 ~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------~~ 149 (387)
T PRK08912 103 ALLALVE--------PGDEVVLFQPLYDAYLPLIRRAG-------------GVPRLVRLEPPHWRL------------PR 149 (387)
T ss_pred HHHHhcC--------CCCEEEEeCCCchhhHHHHHHcC-------------CEEEEEecCcccCcC------------CH
Confidence 8887754 56789999999987644332211 2223344332 1221 77
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccCCCCC--
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHAEIWP-- 264 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~~~~~-- 264 (430)
+++++.+. ++++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+... . ....+...
T Consensus 150 ~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 224 (387)
T PRK08912 150 AALAAAFS---PRTKAVLLNN-PLNPAG-KVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERT 224 (387)
T ss_pred HHHHHHhC---ccceEEEEeC-CCCCcC-cccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCce
Confidence 88888875 3566666666 788888 55667889999999999999999999998664433211 1 11112211
Q ss_pred -ceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHH
Q psy14484 265 -DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 340 (430)
Q Consensus 265 -d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~ 340 (430)
-+.+|||.++ .| +|+|++++++++++.+.. .....+++.++....++.+.+...+ -++..++++++.+.
T Consensus 225 i~~~S~SK~~g~~G-lRiG~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (387)
T PRK08912 225 VKIGSAGKIFSLTG-WKVGFVCAAPPLLRVLAK------AHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDR 297 (387)
T ss_pred EEEeechhhccCcC-ceeEEEecCHHHHHHHHH------HHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2337899998 67 899999999999887765 1122335555555555555553110 12345566666667
Q ss_pred HHHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec---------CCEEEEeCCCCC
Q psy14484 341 ITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYIL 409 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~---------~~~lR~~~~~~~ 409 (430)
+.+.|+.. + +....+.|. ++++.+. ....... ..++++.|+ ++||.+.|+ .+++|++++ .
T Consensus 298 l~~~L~~~---g-~~~~~~~g~~~l~~~l~-~~~~~~~--~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~--~ 368 (387)
T PRK08912 298 LAAGLRRI---G-FPVLPSQGTYFLTVDLA-PLGLAED--DVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFA--K 368 (387)
T ss_pred HHHHHHhC---C-CcccCCCcceEEEeccc-ccCCCCC--HHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEe--C
Confidence 77766654 2 222334444 4555554 3111011 356888875 579998874 257899766 4
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
.++++++++++|++++.+
T Consensus 369 ~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 369 RDATLDEAVERLAAARRR 386 (387)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 689999999999988753
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-22 Score=193.53 Aligned_cols=338 Identities=12% Similarity=0.027 Sum_probs=212.9
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.|...+||.++.. .+. .++.+.+++.+.+..... +....+..++++.+++.+.+..+ ..+++|++|+|+++|+
T Consensus 27 ~~~~~i~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 27 ADGPLIDLSQAVP--GYP-PPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred cCCCeEEeCCCCC--CCC-CCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 3566899988743 222 367788888876643211 11222344566777777776543 4568999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++++++. +++.|++.+|+|.++...... ...+...++....... ..|
T Consensus 104 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~-------------~g~~~~~v~~~~~~~~----------~~~ 152 (386)
T PRK07550 104 WAAMVTLAG--------AGDEVILPLPWYFNHKMWLDM-------------LGIRPVYLPCDEGPGL----------LPD 152 (386)
T ss_pred HHHHHHhcC--------CCCEEEEcCCCCcchHHHHHh-------------cCCEEEEEecCCCcCC----------CCC
Confidence 999888764 677899999999776432221 1122233433211110 017
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-cc-ccccCCC---
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FF-ACEHAEI--- 262 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~-~~~~~~~--- 262 (430)
++++++.+++ +++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.+|...+. .. .+...+.
T Consensus 153 ~~~l~~~~~~---~~~~v~~~~-P~NPtG-~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~ 227 (386)
T PRK07550 153 PAAAEALITP---RTRAIALVT-PNNPTG-VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDT 227 (386)
T ss_pred HHHHHHHhcc---cCcEEEEeC-CCCCCC-cccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCcccc
Confidence 7889988863 455555555 667888 456788899999999999999999999987733221 11 1111111
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~ 339 (430)
...+.+|||.++ .| +|+|++++++++++.+.. .....+.+.+.+++.++...++.+++ +...+.++++.+
T Consensus 228 ~i~~~S~SK~~g~~G-~RiG~i~~~~~~~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK07550 228 LVHLYSFSKSYALTG-HRVGAVVASPARIAEIEK------FMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRD 300 (386)
T ss_pred EEEEecchhhccCcc-cceEeeecCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 123458999997 56 799999999988877765 22334445566777666666653221 223445566666
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCH
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 411 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~ 411 (430)
.+.+.|+.. +.+...+..|.+.++.+. .... . +.++++.|+ ++||.+.|+ .+++|++++ ..++
T Consensus 301 ~l~~~L~~~---~~~~~~~~g~~~~~~~~~-~~~~-~---~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~-~~~~ 371 (386)
T PRK07550 301 AFRAVFARL---PGWELLASGAYFAYVRHP-FPDR-P---SREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA-NADV 371 (386)
T ss_pred HHHHHHHhC---CCceeCCCceEEEEecCC-CCCC-C---HHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee-cCCH
Confidence 666666543 222212223445555554 3111 1 357888865 579999884 358999876 3578
Q ss_pred HHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQT 424 (430)
Q Consensus 412 e~i~~~~~~l~~~ 424 (430)
+++++++++|.+.
T Consensus 372 ~~~~~~~~~l~~~ 384 (386)
T PRK07550 372 AGIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-22 Score=194.16 Aligned_cols=343 Identities=13% Similarity=0.105 Sum_probs=219.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcCC--CCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgteA~~ 108 (430)
.|.+++|+..|. ..++ .+|.+.+++.+.+.... .+....+..++++++++.+.+.++. .+++|++|+|+++|+.
T Consensus 31 ~~~~~i~l~~g~--p~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 107 (402)
T PRK06107 31 AGRSIVDLTVGE--PDFD-TPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIF 107 (402)
T ss_pred ccCCEEEcCCCC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHH
Confidence 356788988774 3344 37888999888776421 1222234446778888888777653 5678999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++.... +++.|++.+++|.++......... ....++.+...... -|+
T Consensus 108 ~~~~~~~~--------~gd~vl~~~p~y~~y~~~~~~~~~-------------~~~~v~~~~~~~~~----------~~~ 156 (402)
T PRK06107 108 LALMATLE--------AGDEVIIPAPYWVSYPDMVLANDG-------------TPVIVACPEEQGFK----------LTP 156 (402)
T ss_pred HHHHHhcC--------CCCEEEEecCCCcCHHHHHHHcCC-------------EEEEecCCcccCCC----------CCH
Confidence 99886543 568899999998877433322111 11223322111100 167
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCCCCcccccc-c-cc-CCCCC
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFA-C-EH-AEIWP 264 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~-gi~li~DEv~~g~g~~g~~~~-~-~~-~~~~~ 264 (430)
+++++.+. .+++++++.. ++|++| ..++.+.+++|.++|++| ++++|+||+|..+...+..+. + .. .+...
T Consensus 157 ~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~ 231 (402)
T PRK06107 157 EALEAAIT---PRTRWLILNA-PSNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRD 231 (402)
T ss_pred HHHHhhcC---cCceEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccC
Confidence 88888775 3556566655 677888 677788899999999998 999999999987654442211 1 11 11222
Q ss_pred cee---eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHH
Q psy14484 265 DFL---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQ 336 (430)
Q Consensus 265 d~~---~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~ 336 (430)
.++ +|||.++ .| +|+|++++++++.+.+.. .....+++.+.+++.++..+|+. .+.+ .+.+++
T Consensus 232 ~vi~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~------~~~~~~~~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~ 302 (402)
T PRK06107 232 RVLVTNGVSKTYAMTG-WRIGYAAGPADLIAAINK------LQSQSSSCPSSISQAAAAAALNG--DQSFVTESVAVYKQ 302 (402)
T ss_pred CEEEEeccchhhcCcc-cceeeeecCHHHHHHHHH------HHHhcccCCChHHHHHHHHHhcC--ChHHHHHHHHHHHH
Confidence 333 5799997 57 899999999999887765 23334566788888877777741 1223 334455
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecceEE-EEEEeecC--C--ccc--hhHHHHHHHHH-HHCCcEEeec-----CCEEEE
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIED--P--EQI--ETFSKKFFVAA-LKNELLLRPI-----GNTVYL 403 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~--~--~~~--~~~a~~~~~~l-~~~Gv~~~~~-----~~~lR~ 403 (430)
+.+.+.+.|+++ +++....+.|.++ ++.+. .- . ... ......+++.+ .++||.+.|+ .+++|+
T Consensus 303 ~~~~~~~~L~~~---~g~~~~~p~gg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~~~iRi 378 (402)
T PRK06107 303 RRDYALALLNAI---PGLSCLVPDGAFYLYVNCA-GLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGLSPYFRL 378 (402)
T ss_pred HHHHHHHHHhcC---CCCcccCCCcceEEeeecc-cccccccccccCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEE
Confidence 555555555543 3333334455554 44442 10 0 000 00124566555 5679999986 267899
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+ .+++++++++++|.+.+.++
T Consensus 379 s~~--~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 379 SIA--TSLETLEEACARIERAVAAL 401 (402)
T ss_pred EeC--CCHHHHHHHHHHHHHHHHhc
Confidence 766 57999999999999998876
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-22 Score=193.43 Aligned_cols=333 Identities=12% Similarity=0.043 Sum_probs=210.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
.|..++||..+ ++.+..++++.+++.+.+.... .+..+.+..++++++++.+.+.++ .+++ .+++|+|+++|
T Consensus 33 ~g~~~i~l~~g---~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 33 QGLDLIDLGMG---NPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred cCCCeEEcCCC---CCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 35678998775 3333345678887777664321 111122333566777777766544 3566 58899999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 184 (430)
+..++.+++. +++.|++.+|+|.++.......+ .+...++.+. .+..
T Consensus 110 l~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~---------- 158 (394)
T PRK05942 110 LTHLALAYVN--------PGDVVLVPSPAYPAHFRGPLIAG-------------AQIYPIILKPENDWLI---------- 158 (394)
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHHcC-------------CEEEEeecCCccCCcc----------
Confidence 9999887754 67889999999988644332211 1222333221 1111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cc---ccc-
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FA---CEH- 259 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~---~~~- 259 (430)
|++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.. .. +..
T Consensus 159 --d~~~l~~~~~---~~~k~i~l~~-P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~ 231 (394)
T PRK05942 159 --DLSSIPEEVA---QQAKILYFNY-PSNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA 231 (394)
T ss_pred --CHHHHHHhcc---ccceEEEEcC-CCCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCc
Confidence 7888888775 4677777776 788888 6677888999999999999999999999876543321 11 111
Q ss_pred CCCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHH
Q psy14484 260 AEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 336 (430)
Q Consensus 260 ~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~ 336 (430)
.+....+.+|||.++ .| +|+|++++++++++.+.. ......++.+.+++.++.++|+..+. +...+++++
T Consensus 232 ~~~~i~~~SfSK~~~~~G-lRiG~i~~~~~l~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 304 (394)
T PRK05942 232 KDIGVEFHTLSKTYNMAG-WRVGFVVGNRHIIQGLRT------LKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRT 304 (394)
T ss_pred cccEEEEecchhccCChh-hheeeeecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 112233457999986 46 899999999999888765 11222445566666666666653211 234455566
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHH-HHHCCcEEeec-------CCEEEEeCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVA-ALKNELLLRPI-------GNTVYLMPPY 407 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~-l~~~Gv~~~~~-------~~~lR~~~~~ 407 (430)
+.+++.+.|+++ + +...++.|. ++++.+. .... ..++.+. +.++||.+.++ .+++|++++
T Consensus 305 ~~~~~~~~L~~~---~-~~~~~~~~~~f~~~~~~-~~~~-----~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRis~~- 373 (394)
T PRK05942 305 RRDFLIQGLGEL---G-WNIPPTKATMYLWVPCP-VGMG-----STDFALNVLQKTGVVVTPGNAFGEGGEGYVRISLI- 373 (394)
T ss_pred HHHHHHHHHHHC---C-CeecCCCeeeEEEEECC-CCCC-----HHHHHHHHHHHCCEEEeCChhhCcCCCCeEEEEec-
Confidence 666666666543 2 222334455 5556654 3211 2346554 45789999874 268999875
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~ 424 (430)
.+.+.+.+.+++|.++
T Consensus 374 -~~~~~l~~~l~~l~~~ 389 (394)
T PRK05942 374 -ADCDRLGEALDRLKQA 389 (394)
T ss_pred -CCHHHHHHHHHHHHHh
Confidence 4566677777776553
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.4e-22 Score=191.70 Aligned_cols=344 Identities=17% Similarity=0.110 Sum_probs=211.9
Q ss_pred CCCEEEecccccccccC-CCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLF-GHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~l-G~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA 106 (430)
.|+.+++|..|...... -..++.+++++.+.+.... .+....+..++++.+++.+.+..+ .++++|++|+|+++|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 108 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence 67889998776432111 2357889999988776521 111222334555666666665433 467899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-C-CCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-D-SRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 184 (430)
+..++.+++. +++.|++.+++|..+.......+ .....++.. . .+..
T Consensus 109 l~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~i~~~~~~~~~~---------- 157 (409)
T PLN02656 109 IDVALSMLAR--------PGANILLPRPGFPIYELCAAFRH-------------LEVRYVDLLPEKGWEV---------- 157 (409)
T ss_pred HHHHHHHHhC--------CCCeEEEeCCCCCcHHHHHHHcC-------------CEEEEEeCCCcCCCCC----------
Confidence 9999988764 66789999999976533322211 122333331 1 1112
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIW 263 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~ 263 (430)
|++++++.+. .++.++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.++...+..+ .....+-.
T Consensus 158 --d~~~l~~~~~---~~~~~v~l~~-P~NPtG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 230 (409)
T PLN02656 158 --DLDAVEALAD---QNTVALVIIN-PGNPCG-NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSI 230 (409)
T ss_pred --CHHHHHHHhc---cCceEEEEEC-CCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhccc
Confidence 7888888875 3345555555 567788 55677889999999999999999999999875544321 11111111
Q ss_pred ---CceeeeecccCC-CccccEEEEEc--------HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---c
Q psy14484 264 ---PDFLCLSKGITG-GYLPLSLVMTT--------DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---D 328 (430)
Q Consensus 264 ---~d~~~~sK~l~g-G~~~ig~~~~~--------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~ 328 (430)
.-+-+|||.++. | +|+|+++++ +++++.+.. . .....+.+.+++.++.++|+...+ .
T Consensus 231 ~~vi~~~SfSK~f~~pG-lRiG~~i~~~~~~~~~~~~~~~~~~~------~-~~~~~~~s~~~q~a~~~~l~~~~~~~~~ 302 (409)
T PLN02656 231 VPVLTLGSLSKRWIVPG-WRLGWFVTTDPSGSFRDPKIVERIKK------Y-FDILGGPATFIQAAVPTILEQTDESFFK 302 (409)
T ss_pred CcEEEEcccchhccCcc-eeEEEEEEeCcccccccHHHHHHHHH------H-HhhhcCCCHHHHHHHHHHHhcCcHHHHH
Confidence 123379998544 6 899999984 467666654 1 111224567778777777752111 1
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCee-eEeecc-eEEEEEEeecCCcc-chhHHHHHHHHHHHCCcEEeec-----CCE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKII-NFRQKG-MIWAFDVIIEDPEQ-IETFSKKFFVAALKNELLLRPI-----GNT 400 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~g-~~~~~~~~~~~~~~-~~~~a~~~~~~l~~~Gv~~~~~-----~~~ 400 (430)
...+.++++.+.+.+.|+.+ +... ..++.| .++++.+. ..... ..+....+.+.+.++||.+.|+ .++
T Consensus 303 ~~~~~~~~~r~~~~~~L~~~---~~~~~~~~p~gg~~~w~~l~-~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~ 378 (409)
T PLN02656 303 KTINILKQSSDICCDRIKEI---PCITCPHKPEGSMAVMVKLN-LSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNW 378 (409)
T ss_pred HHHHHHHHHHHHHHHHHhhC---CCCcCCcCCCeEEEEEEecc-hhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCe
Confidence 22334455555555555543 3221 123444 55555553 21100 0000123456677889999986 268
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+|++++ .+++++++.+++|++++.+
T Consensus 379 iRi~~~--~~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 379 LRITFA--ADPSSLEEALGRIKSFYLR 403 (409)
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 999777 4799999999999998864
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=194.08 Aligned_cols=333 Identities=11% Similarity=0.078 Sum_probs=214.7
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcCCC--CC-eEEEcCCchHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQYK--LG-HCFYGSDGASAVE 108 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~--~~-~v~~~~sgteA~~ 108 (430)
+..++||..|. ..++ .+|.+.+++.+.+..... +....+..++++.+++.+.+.++.. ++ ++++|+|+++|+.
T Consensus 29 ~~~~i~l~~g~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~ 105 (386)
T PRK09082 29 EHGAINLSQGF--PDFD-GPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALF 105 (386)
T ss_pred hCCEEEecCCC--CCCC-CCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHH
Confidence 34678988773 3343 478888998887754321 1222334467788888888776543 33 7999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCA 187 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 187 (430)
.++...+. +++.|++.+++|.++.......+ .....++... .+. .|
T Consensus 106 ~~~~~~~~--------~gd~Vli~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~------------~d 152 (386)
T PRK09082 106 AAILALVR--------PGDEVIVFDPSYDSYAPAIELAG-------------GRAVRVALQPPDFR------------VD 152 (386)
T ss_pred HHHHHHcC--------CCCEEEEeCCCchhhHHHHHHcC-------------CEEEEEecCccccc------------CC
Confidence 99987764 66889999999987643332211 1223333321 111 17
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc--cccccCCCCCc
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAEIWPD 265 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~--~~~~~~~~~~d 265 (430)
++++++.++ ++++++++.. ++|++| ..++++.+++|.++|++||+++|+||+|..+...+.. ......+....
T Consensus 153 ~~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~ 227 (386)
T PRK09082 153 WQRFAAAIS---PRTRLIILNT-PHNPSG-TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRER 227 (386)
T ss_pred HHHHHHhcC---ccceEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCc
Confidence 888888885 4567777777 788888 5557788999999999999999999999876443321 11122222222
Q ss_pred ---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 266 ---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 266 ---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
+.+|||.++ .| +|+|++++++++++.+.. ......++.+.+++.++.+.++... ...+.+.++++.+
T Consensus 228 ~i~~~S~SK~~~~~G-~RiG~iv~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 300 (386)
T PRK09082 228 AFVVSSFGKTYHVTG-WKVGYCVAPAALSAEFRK------VHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRD 300 (386)
T ss_pred EEEEeechhhccchh-hhhhhhhCCHHHHHHHHH------HHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 337999996 46 899999999999888765 2223455667777776665554110 1123344556666
Q ss_pred HHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec---------CCEEEEeCCCC
Q psy14484 340 KITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI---------GNTVYLMPPYI 408 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~---------~~~lR~~~~~~ 408 (430)
.+.+.|+.. .+...++.|.+ +++.+. .-.. .. ..++++.| .+.||.+.|+ .+++|++.+
T Consensus 301 ~~~~~L~~~----~~~~~~~~g~~~~~~~~~-~~~~-~~--~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~-- 370 (386)
T PRK09082 301 RFRAALANS----RFKLLPCEGTYFQLVDYS-AISD-LD--DVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFA-- 370 (386)
T ss_pred HHHHHHHhC----CCcccCCCeeEEEEEecc-ccCC-CC--HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEec--
Confidence 666666543 12223344554 445554 2111 11 35788876 5779998874 157888765
Q ss_pred CCHHHHHHHHHHHHH
Q psy14484 409 LNKNEIQHMTSAIFQ 423 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~ 423 (430)
.+++++++.+++|++
T Consensus 371 ~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 371 KQEETLDAAAERLCQ 385 (386)
T ss_pred CCHHHHHHHHHHHhh
Confidence 478999999999874
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=193.59 Aligned_cols=323 Identities=12% Similarity=0.027 Sum_probs=204.9
Q ss_pred CCCHHHHHHHHHHHhhcccccc-CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 50 HSNSYINKALKNQLNKLEHVML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
+.+|++++++.+++........ ........++++++++++++.+.+.+++++||++|+..+++.++... ..++++
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~----~~~~~~ 106 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLA----KAEKPN 106 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhc----cCCCce
Confidence 5789999999988865321111 11222444789999999997665678999999999999998886531 013467
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
|++.+.++..+... . .....+...++.+.+... |+++|++.+++ ++.++++.
T Consensus 107 vl~~~~~h~s~~~~-~------------~~~g~~~~~v~~~~~~~~------------d~~~l~~~i~~---~~~~vi~~ 158 (371)
T PRK13520 107 IVVPESAHFSFDKA-A------------DMLGVELRRAPLDDDYRV------------DVKAVEDLIDD---NTIGIVGI 158 (371)
T ss_pred EEecCcchHHHHHH-H------------HHcCceEEEecCCCCCcC------------CHHHHHHHHhh---CCEEEEEE
Confidence 77766554322111 1 111223344544432222 88999999963 45555555
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC----CcccccccccCCCCCceeeee--cccCCCccccEE
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG----RTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSL 282 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g----~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~ 282 (430)
. +++++|.+.| +++|.++|+++|+++|+||+|+++. +.+..+.... ...|.+++| |...++ .|+|+
T Consensus 159 ~-~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~--~~vd~~~~s~~K~~~a~-~~~G~ 230 (371)
T PRK13520 159 A-GTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL--PGVDSITIDPHKMGLAP-IPAGG 230 (371)
T ss_pred c-CCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--CCCceEEECCccccCcc-CCceE
Confidence 5 5677898887 9999999999999999999998552 1111112111 234666554 543334 68988
Q ss_pred EEEc-HHHHHhhhccCC----cccccccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 283 VMTT-DKIYNSIYYKNN----INIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 283 ~~~~-~~~~~~~~~~~~----~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
++.+ +++.+.+..... ...+.+.+|.+ ...++++.++|+.+..+ +..++..++.+++.+.|+++ ....
T Consensus 231 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~--~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~- 306 (371)
T PRK13520 231 ILFRDESYLDALAVDTPYLTSKKQATLTGTRS--GAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEP- 306 (371)
T ss_pred EEEcCHHHHHhhcccCccccCCCCcceEeecc--ChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEE-
Confidence 8764 456665532000 00011122332 23456666777765443 35677788888888888765 2221
Q ss_pred eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 355 INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
...+...++.+.+. + +.++.+.|.++||.+..+. +++|++++..+|++|++.++++|+++++
T Consensus 307 -~~~~~~~~v~~~~~-~--------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 307 -VIEPVLNIVAFDDP-N--------PDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred -ecCCCceEEEEecC-C--------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 12233445555544 2 3678999999999988763 6799998889999999999999998765
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-22 Score=192.12 Aligned_cols=319 Identities=15% Similarity=0.174 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC--eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~v 129 (430)
+|.+++++++.. .+ ......+..+++++.+++.++...+ .+++++||+++++.++..+.. +++++
T Consensus 11 ~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~--------~~~~v 77 (355)
T TIGR03301 11 SATVRDAMLVDW---CH--WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP--------RDGKL 77 (355)
T ss_pred CHHHHHHhhhhc---cC--CCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccC--------CCCeE
Confidence 566666666521 11 1111136678899999999976554 678899999999999988764 45667
Q ss_pred EEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Q psy14484 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209 (430)
Q Consensus 130 l~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 209 (430)
++.++++++....... .........++.+..... |++++++.++++ .++..+++..
T Consensus 78 i~~~~~~~~~~~~~~a-----------~~~g~~~~~i~~~~~~~~------------d~~~l~~~l~~~-~~~~~v~~~~ 133 (355)
T TIGR03301 78 LVLINGAYGERLAKIC-----------EYLGIPHTDLNFSEYEPP------------DLNRIEEALAAD-PDITHVATVH 133 (355)
T ss_pred EEECCCchhhHHHHHH-----------HHcCCceEEEecCCCCCC------------CHHHHHHHHHhC-CCceEEEEEe
Confidence 7777766664211111 001122344444322222 789999999764 3455555555
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce--eeeecccCCCccccEEEEEcH
Q psy14484 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF--LCLSKGITGGYLPLSLVMTTD 287 (430)
Q Consensus 210 ~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~--~~~sK~l~gG~~~ig~~~~~~ 287 (430)
+++++|...+ +++|.++|++||+++|+|++++ ++.. .+.+..+ ..|+ .+++|+++|+ ..+|++++++
T Consensus 134 -~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~--~~~~~~~--~~d~~~~s~~K~l~~~-~G~g~~~~~~ 202 (355)
T TIGR03301 134 -HETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI--PIDIEEL--DVDALIASANKCLEGV-PGFGFVIARR 202 (355)
T ss_pred -cCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc--ccchhhc--CccEEEecCCcccccC-CceeEEEECH
Confidence 6677888777 8999999999999999999876 5432 2223333 3455 4678998765 4589999999
Q ss_pred HHHHhhhccCCccccc-------------ccCCCCCCHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHchhc
Q psy14484 288 KIYNSIYYKNNINIFL-------------HSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~-------------~~~t~~~~~~~~~aa~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~l~~ 350 (430)
++++.+.. ...+.. ....++.+...+.++.++++.+.++. ..++++++.+++.+.|+++ .
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g 279 (355)
T TIGR03301 203 DLLEASAG--NARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-G 279 (355)
T ss_pred HHHHHhhC--CCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 98877652 111100 01234556677777777887664433 4456777888888888765 2
Q ss_pred CCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC----CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 351 HPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 351 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~----~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...+.. ....+.++++.++ .... .. ..++.+.|.++||.+.++. +++||+++..+++++++++++.|++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 355 (355)
T TIGR03301 280 FQPLLPERWQSPIIVSFLYP-DDPD-FD--FDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL 355 (355)
T ss_pred CeeecCCCCCCCcEEEEECC-CCCc-ch--HHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence 221111 1233455566555 3211 11 3578999999999998863 589999988899999999999998753
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-22 Score=191.99 Aligned_cols=338 Identities=14% Similarity=0.151 Sum_probs=208.8
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh-cCCCCCeEEEcCCchHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL-TQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~v~~~~sgteA~~~al 111 (430)
|..++||..|. ..++ .++.+.+++.+.......+....+..+.++.+++.+... .+.++++|++|+|+++|+..++
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~ 105 (397)
T PRK07568 29 GIKVYHLNIGQ--PDIK-TPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAM 105 (397)
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHH
Confidence 44578877763 3333 367788888765433221221222334445555554421 1356789999999999999998
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
..... +++.|++.+++|..+...... .+ .....++.+..... ...+++++
T Consensus 106 ~~l~~--------~gd~Vl~~~p~y~~~~~~~~~-~g------------~~~~~v~~~~~~g~---------~~~~~~~l 155 (397)
T PRK07568 106 MAICD--------PGDEILVPEPFYANYNGFATS-AG------------VKIVPVTTKIEEGF---------HLPSKEEI 155 (397)
T ss_pred HHhcC--------CCCEEEEecCCCccHHHHHHH-cC------------CEEEEeecCcccCC---------CCCCHHHH
Confidence 87653 567899999988765332111 11 12223332111000 00146788
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c-cccCCCCCcee--
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A-CEHAEIWPDFL-- 267 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~-~~~~~~~~d~~-- 267 (430)
+++++ .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.+|.+.+... . ....+..+.++
T Consensus 156 ~~~~~---~~~~~v~i~~-p~NPtG-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~ 230 (397)
T PRK07568 156 EKLIT---PKTKAILISN-PGNPTG-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIII 230 (397)
T ss_pred HHhcC---ccceEEEEEC-CCCCCC-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEE
Confidence 88775 4566776666 678888 56677779999999999999999999999886554321 1 12222223333
Q ss_pred -eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHH
Q psy14484 268 -CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKIT 342 (430)
Q Consensus 268 -~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~ 342 (430)
+|||.++. | +|+|+++++ +++++.+.. . ...+++.+.+.+.++..+|+..+ .+.+.+.+++..+.+.
T Consensus 231 ~S~SK~~~~~G-~R~G~~~~~~~~~~~~~~~------~-~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 302 (397)
T PRK07568 231 DSVSKRYSACG-ARIGCLISKNKELIAAAMK------L-CQARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILY 302 (397)
T ss_pred ecchhhccCCC-cceEEEecCCHHHHHHHHH------H-hhccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 79999985 7 899999985 677776653 1 11245667777777766664211 1223444555666666
Q ss_pred HHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHH------CCcEEeec----------CCEEEEeC
Q psy14484 343 KALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALK------NELLLRPI----------GNTVYLMP 405 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~------~Gv~~~~~----------~~~lR~~~ 405 (430)
+.|+++ +.+....+.|.+ +++.+. .. . +.++++.|.+ +||.+.|+ .+++|+++
T Consensus 303 ~~L~~~---~~~~~~~p~g~~~~~~~l~-~~---~---~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~ 372 (397)
T PRK07568 303 EELNKI---PGVVCEKPKGAFYIIAKLP-VD---D---AEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAY 372 (397)
T ss_pred HHHhcC---CCceecCCCcceEEEEecC-CC---C---HHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEE
Confidence 666543 333333445554 455655 31 1 2467777765 58998873 14799976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+ .+++++++++++|++++.+.
T Consensus 373 ~--~~~~~~~~~~~~l~~~l~~~ 393 (397)
T PRK07568 373 V--LNEEDLKRAMEILKEALEKY 393 (397)
T ss_pred e--CCHHHHHHHHHHHHHHHHHh
Confidence 5 56899999999999988764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-22 Score=192.42 Aligned_cols=343 Identities=12% Similarity=0.040 Sum_probs=206.8
Q ss_pred CCEEEecccccccccCCC-CCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
|+.++++..|.....-.. .+|++.+++.+++..... +....+..++++.+++.+.+..+ .++++|++|+|+++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 778888776632211112 357899999988765321 12222334555666666655433 3567999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-C-CCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-D-SRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 185 (430)
..+++.+.. +++.|++.+|+|+.+......... +...++.+ . .+..
T Consensus 131 ~l~~~~l~~--------~Gd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~~~----------- 178 (430)
T PLN00145 131 EIIMSVLAQ--------PGANILLPRPGYPLYEARAVFSGL-------------EVRHFDLLPERGWEV----------- 178 (430)
T ss_pred HHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHcCC-------------EEEEeeCCcccCCcC-----------
Confidence 999998754 667899999999886443332221 22233321 1 1122
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWP 264 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~ 264 (430)
|++++++.++ .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+.+.+..+ .....+-..
T Consensus 179 -d~~~l~~~~~---~~~~~i~i~~-P~NPtG-~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~ 252 (430)
T PLN00145 179 -DLEGVEALAD---ENTVAMVIIN-PNNPCG-SVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVA 252 (430)
T ss_pred -CHHHHHHHhC---cCceEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccC
Confidence 8889988875 3455555555 567888 56778889999999999999999999999775443221 111111112
Q ss_pred c---eeeeecccC-CCccccEEEEE--cHHHHH------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cC
Q psy14484 265 D---FLCLSKGIT-GGYLPLSLVMT--TDKIYN------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DN 329 (430)
Q Consensus 265 d---~~~~sK~l~-gG~~~ig~~~~--~~~~~~------~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~ 329 (430)
. +-+|||.++ .| +|+|++++ ++.+++ .+.. . .......+.+.+.++..+|+.-.+ ++
T Consensus 253 ~vi~~~S~SK~~~~pG-~RlG~iv~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~ 324 (430)
T PLN00145 253 PVLTLGSISKRWVVPG-WRLGWIATCDPNGILKETKVVDSIRN------Y-LNISTDPATFVQGAIPQIIANTKEEFFTK 324 (430)
T ss_pred cEEEEeccccccCCCC-eeEEEEEEecchhhhhhhHHHHHHHH------H-hcccCCCCHHHHHHHHHHHhcCHHHHHHH
Confidence 2 336999854 46 89999987 334332 2222 1 111223456777777776652111 12
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeee-EeecceEEE-EEEeecCCccchhHHHHHHHHH-HHCCcEEeec-----CCEE
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWA-FDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-----GNTV 401 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~g~~~~-~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~-----~~~l 401 (430)
..+.+++..+.+.+.|+++ +++.. ..+.|.++. +.+. ...........+++..| .++||.+.|+ .+++
T Consensus 325 ~~~~~~~~~~~~~~~L~~~---~g~~~~~~P~ga~y~~v~l~-~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~l 400 (430)
T PLN00145 325 TLGLLKETADICYEKIKEI---KCITCPHKPEGSMFVMVKLD-LSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNWL 400 (430)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCCCCcCCCeeeEEEeccC-hhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 2344455555555555443 44332 235555544 4443 21000000024566555 4669999986 3789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
||++. .+++++++++++|.+++.+
T Consensus 401 Ris~~--~~~~~l~~al~rl~~~~~~ 424 (430)
T PLN00145 401 RITFA--IDPPSLEDGLERLKSFCLR 424 (430)
T ss_pred EEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 99766 5789999999999998864
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-22 Score=197.60 Aligned_cols=324 Identities=13% Similarity=0.114 Sum_probs=196.9
Q ss_pred CHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc
Q psy14484 52 NSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~ 127 (430)
++++.+++.+.+..... +....+..++++.+++.+.+.+ +.++++|++|+|+++|+..+++++.. +++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--------pGd 156 (462)
T PLN02187 85 CIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLAR--------PNA 156 (462)
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcC--------CCC
Confidence 35688888887764321 1111222345556666665443 35788999999999999999998865 678
Q ss_pred EEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 128 ~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
.|++.+|+|.++.......+ .+...++.. +.+.. |+++|+++++. ...+++
T Consensus 157 ~Vlv~~P~y~~y~~~~~~~g-------------~~~~~~~l~~~~~~~~------------d~~~l~~~~~~--~~~~v~ 209 (462)
T PLN02187 157 NILLPRPGFPHYDARAAYSG-------------LEVRKFDLLPEKEWEI------------DLEGIEAIADE--NTVAMV 209 (462)
T ss_pred EEEEeCCCCccHHHHHHHcC-------------CEEEEEeCccccCCcc------------CHHHHHHhcCC--CcEEEE
Confidence 89999999998744333222 122333322 11222 78899888752 334455
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccC-CCCCc--eeeeecccCC-Ccccc
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHA-EIWPD--FLCLSKGITG-GYLPL 280 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~-~~~~d--~~~~sK~l~g-G~~~i 280 (430)
+++| +|++| ...+.+.+++|.++|++||+++|+||+|..+.+.+..+ ....+ ...+- +-+|||.++. | +|+
T Consensus 210 i~nP--~NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pG-lRi 285 (462)
T PLN02187 210 VINP--NNPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPG-WKI 285 (462)
T ss_pred EeCC--CCCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCcc-cee
Confidence 5555 57778 66788889999999999999999999999865444322 11111 11121 2378999654 6 899
Q ss_pred EEEEEc-H-HHH---HhhhccCCcccccccCCC--CCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhc
Q psy14484 281 SLVMTT-D-KIY---NSIYYKNNINIFLHSHSY--SGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 281 g~~~~~-~-~~~---~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~ 350 (430)
|+++++ + .+. +.+.. ......+ +.+.+++.++.++|+.... +...+.+++..+++.+.|+++
T Consensus 286 G~~v~~~p~~~~~~~~~~~~------~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~-- 357 (462)
T PLN02187 286 GWIALNDPEGVFETTKVLQS------IKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI-- 357 (462)
T ss_pred EEEEecCchhHHHHHHHHHH------HHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 999984 3 222 23322 1111112 3467777777777752111 223344555555666666543
Q ss_pred CCCee-eEeec-ceEEEEEEeecCCcc-chhHHHHHHH-HHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 351 HPKII-NFRQK-GMIWAFDVIIEDPEQ-IETFSKKFFV-AALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 351 ~~~~~-~~~~~-g~~~~~~~~~~~~~~-~~~~a~~~~~-~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+... ...+. |.|+++.+. ..... ..+ ..+++. .+.++||.+.|+ .+++|+++. ..++.+++++++|
T Consensus 358 -~~~~~~~~P~gg~fl~~~l~-~~~~~~~~~-~~~~~~~ll~~~gV~v~pG~~fg~~~~iRis~~--~~~e~l~~al~rL 432 (462)
T PLN02187 358 -PCVVCPKKPESCTYLLTKLE-LSLMDNIKD-DIDFCVKLAREENLVFLPGDALGLKNWMRITIG--VEAHMLEDALERL 432 (462)
T ss_pred -CCCcCCCCCCEeEEEEeecC-hhhCCCCCC-HHHHHHHHHhhCCEEEECccccCCCCeEEEEeC--CCHHHHHHHHHHH
Confidence 3322 12333 466666553 21100 001 234544 457889999986 268999665 5789999999999
Q ss_pred HHHHHH
Q psy14484 422 FQTFNE 427 (430)
Q Consensus 422 ~~~l~~ 427 (430)
.+++.+
T Consensus 433 ~~~l~~ 438 (462)
T PLN02187 433 KGFCTR 438 (462)
T ss_pred HHHHHH
Confidence 998864
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-22 Score=191.04 Aligned_cols=323 Identities=13% Similarity=0.122 Sum_probs=200.6
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
...++||..+ .++++ .+|.+.+++.+.+.... .|+.....+|++.+++.++.++++|++|+|+++++..+++
T Consensus 21 ~~~~i~l~~~--~n~~~-~~~~~~~a~~~~~~~~~-----~Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~ 92 (360)
T PRK07392 21 PDAILDFSAS--INPLG-PPESVIAAIQSALSALR-----HYPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGR 92 (360)
T ss_pred cccEEEeCCc--CCCCC-CCHHHHHHHHHHHHHhh-----cCCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHH
Confidence 3467898866 56676 67899999888776422 2222223577778888877788999999999999998888
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++. +++.|++.+|+|.++.......+. .+..++........ ....++++++
T Consensus 93 ~l~---------~g~~vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~-------~~~~~~~~~~ 143 (360)
T PRK07392 93 ELA---------QLRAVYLITPAFGDYRRALRAFGA-------------TVKELPLPLDQPSP-------GLTLRLQTLP 143 (360)
T ss_pred HhC---------CCCeEEEECCCcHHHHHHHHHcCC-------------eEEEEecccccCCc-------ccccCHHHHH
Confidence 643 345899999999887554443222 22233322111000 0001345544
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCc---eee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPD---FLC 268 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d---~~~ 268 (430)
+.. .+++++++.. ++|++|...+ .++|.++++++++ +|+||+|..|...+.... .......+. +-+
T Consensus 144 ~~~----~~~~~~~l~n-P~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S 213 (360)
T PRK07392 144 PQL----TPNDGLLLNN-PHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRS 213 (360)
T ss_pred Hhc----cCCCEEEEeC-CCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEe
Confidence 432 2345555555 7888886665 5677788888885 666999998865442111 111121223 337
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~ 346 (430)
|||.++ .| +|+|++++++++++.+.. ....++.+.+++.++.++|+... .....+.+++..+++.+.|+
T Consensus 214 ~SK~~~l~G-lRiG~~v~~~~~~~~~~~--------~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 284 (360)
T PRK07392 214 LTKFYSLPG-LRLGYAIAHPDRLQRWQQ--------WRDPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLA 284 (360)
T ss_pred chhhhcCCc-hheeeeeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 67 899999999998887765 22346678888888877775211 11122344555555555555
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-------GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~ 418 (430)
.+ +++...++.|.++++.+. . . +.++++.+ .+.||.+.|+ .+++|+++. +.++.+++.
T Consensus 285 ~~---~~~~~~~~~~~fl~~~~~-~----~---~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~---~~~~~~~l~ 350 (360)
T PRK07392 285 SL---PGLTPLPSAANFLLVQSQ-G----S---ALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVR---TEAENQRLL 350 (360)
T ss_pred hC---CCcEECCCCCCEEEEEcC-C----C---HHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeC---CHHHHHHHH
Confidence 43 333333455667666554 2 1 35688775 4679999886 158999765 455556666
Q ss_pred HHHHHHH
Q psy14484 419 SAIFQTF 425 (430)
Q Consensus 419 ~~l~~~l 425 (430)
+.|++.+
T Consensus 351 ~al~~~~ 357 (360)
T PRK07392 351 EALAAIL 357 (360)
T ss_pred HHHHHHh
Confidence 6665544
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-22 Score=194.06 Aligned_cols=341 Identities=13% Similarity=0.070 Sum_probs=209.6
Q ss_pred CCEEEecccccccc--cCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhc-CCCCCeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVN--LFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT-QYKLGHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~--~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~-~~~~~~v~~~~sgteA~ 107 (430)
|+.+++|..|.... .++ .++.+.+++.+.+..... +....+..++.+.+++.+.+.- ...+++|++|+|+++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al 108 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLP-TDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAI 108 (401)
T ss_pred CCCeeecCCCCCCCcCCCC-CCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHH
Confidence 46788888764321 233 467888998887665221 1111222234445555444311 14677999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 185 (430)
..++.+++. +++.|++.+|+|..+.......+ ..+..++.+. .+..
T Consensus 109 ~~~~~~l~~--------~gd~v~i~~P~y~~~~~~~~~~g-------------~~v~~~~~~~~~~~~~----------- 156 (401)
T TIGR01264 109 EMCIAALAN--------AGQNILVPRPGFPLYETLAESMG-------------IEVKLYNLLPDKSWEI----------- 156 (401)
T ss_pred HHHHHHhCC--------CCCEEEEeCCCChhHHHHHHHcC-------------CEEEEeecCCccCCCC-----------
Confidence 999987764 56789999999987643322221 1222333321 1121
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|++.+++.+. .+++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.+|.+.+..+. ......++
T Consensus 157 -d~~~l~~~~~---~~~~~v~~~~-p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~ 229 (401)
T TIGR01264 157 -DLKQLESLID---EKTAALIVNN-PSNPCG-SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFE-PLASLSST 229 (401)
T ss_pred -CHHHHHHHhc---cCceEEEEcC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccc-cHHHcCCC
Confidence 7888888875 3456666666 788888 456788899999999999999999999998755542111 11111221
Q ss_pred -----eeeeecccCC-CccccEEEEEcH------HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH---
Q psy14484 266 -----FLCLSKGITG-GYLPLSLVMTTD------KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI--- 330 (430)
Q Consensus 266 -----~~~~sK~l~g-G~~~ig~~~~~~------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~--- 330 (430)
+-+|||.++. | +|+|++++++ ++.+.+.. . ....++.+.+++.++.+.|+.. .+++
T Consensus 230 ~~vi~~~SfSK~~~~~G-lRiG~iv~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~q~a~~~~l~~~-~~~~l~~ 300 (401)
T TIGR01264 230 VPILSCGGLAKRWLVPG-WRLGWIIIHDRRGILRDIRDGLVK------L-SQRILGPCTIVQGALPSILLRT-PQEYFDG 300 (401)
T ss_pred CcEEEEccCcccCCCcc-ceEEEEEecCcchhHHHHHHHHHH------H-hhccCCCCcHHHHHHHHHHHhC-cHHHHHH
Confidence 3379998554 5 8999999874 33333332 1 1123455677777777766521 1223
Q ss_pred -HHHHHHHHHHHHHHHHchhcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEE
Q psy14484 331 -LQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVY 402 (430)
Q Consensus 331 -~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR 402 (430)
.+.+++..+++.+.|+.+ +.+.. .+..|+++++.+. ...........++++.|+ ++||.+.|+ .+++|
T Consensus 301 ~~~~~~~~r~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~iR 376 (401)
T TIGR01264 301 TLSVLESNAMLCYGALAAV---PGLRPVMPSGAMYMMVGIE-MEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFFR 376 (401)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCcccCCCeeeEEEEEec-ccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeEE
Confidence 334444555555555543 33322 2445777777764 310000000256778775 789999875 36899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++ ..++++++++++|.+.+.++
T Consensus 377 is~~--~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 377 VVLT--VPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred EEEc--CCHHHHHHHHHHHHHHHhcc
Confidence 9765 46899999999999988653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-22 Score=191.90 Aligned_cols=345 Identities=14% Similarity=0.087 Sum_probs=211.0
Q ss_pred EECCCCEEEecccccccccCC-C-CCHHHHHHHHHHHhhc--cccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCC
Q psy14484 29 IDVSGKRYLDAISSWWVNLFG-H-SNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSD 102 (430)
Q Consensus 29 ~d~~g~~~lD~~~~~~~~~lG-~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~s 102 (430)
-..+++.++++..|... .+| + .+|.+.+++.+.+... ..+....+..++++.+++.+.+.. +.++++|++|+|
T Consensus 27 ~~~~~~~~i~l~~G~p~-~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G 105 (409)
T PLN00143 27 NEDDHRLAISFGFGDPS-CFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG 105 (409)
T ss_pred ccCCCCceeeCCCCCCC-CCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence 34467889998876321 112 1 5778889998887653 212222344456677777776543 356789999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCCh
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSA 180 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 180 (430)
+++++..+++++.. +++.|++.+|+|+++.......+. ....++.. +.+..
T Consensus 106 ~~~al~~~~~~l~~--------~gd~v~v~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------ 158 (409)
T PLN00143 106 CKHAAEIIIKVLAR--------PEANILLPRPGFPDVETYAIFHHL-------------EIRHFDLLPEKGWEV------ 158 (409)
T ss_pred hHHHHHHHHHHHcC--------CCCEEEEcCCCCcCHHHHHHHcCC-------------EEEEEeccCCCCCcC------
Confidence 99999999998765 678999999999887544333221 11222221 11111
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cccc
Q psy14484 181 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEH 259 (430)
Q Consensus 181 ~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~ 259 (430)
|+++|+++++. ....+++++ ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+..+ ....
T Consensus 159 ------d~~~l~~~~~~--~~~~~~~~n--P~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~ 227 (409)
T PLN00143 159 ------DLDAVEAIADE--NTIAMVIIN--PGNPCG-SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGL 227 (409)
T ss_pred ------CHHHHHHhccc--CCEEEEEEC--CCCCCC-CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhh
Confidence 78899887752 334455555 467888 66778889999999999999999999999875544321 1111
Q ss_pred CCCCCc---eeeeecccCC-CccccEEEEEc-H-HHH------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-h
Q psy14484 260 AEIWPD---FLCLSKGITG-GYLPLSLVMTT-D-KIY------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-N 326 (430)
Q Consensus 260 ~~~~~d---~~~~sK~l~g-G~~~ig~~~~~-~-~~~------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-~ 326 (430)
..-... +-+|||.++. | +|+|+++++ + .+. +.+.. ......+ .+.+++.++.++|+.. .
T Consensus 228 ~~~~~~vi~~~SfSK~f~~pG-lRvG~~v~~~p~~~~~~~~~~~~~~~------~~~~~~~-~~~~~q~a~~~~l~~~~~ 299 (409)
T PLN00143 228 FASIVPVITLGSISKRWMIPG-WGLGWLVTCDPSGLLQICEIADSIKK------ALNPAPF-PPTFIQAAIPEILEKTTE 299 (409)
T ss_pred hcccCcEEEEccchhhcCCCc-cceEEEEeeCchhhhhhHHHHHHHHH------HHhccCC-CCchHHHHHHHHHhcChH
Confidence 111112 3379998554 6 899999983 3 332 22222 1111222 3566777776666421 0
Q ss_pred --hcCHHHHHHHHHHHHHHHHHchhcCCCee-eEee-cceEEEEEEeecCC-ccchhHHHHHHH-HHHHCCcEEeec---
Q psy14484 327 --KDNILQRISQDMKKITKALTSLITHPKII-NFRQ-KGMIWAFDVIIEDP-EQIETFSKKFFV-AALKNELLLRPI--- 397 (430)
Q Consensus 327 --~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~-~g~~~~~~~~~~~~-~~~~~~a~~~~~-~l~~~Gv~~~~~--- 397 (430)
-++..+.+++..+++.+.|+++ +... ...+ -|.++++.+. ... ....+ ..+++. .+.++||.+.|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~L~~~---~~~~~~~~p~gg~f~w~~l~-~~~~~~~~~-~~~~~~~ll~~~gV~v~pg~~f 374 (409)
T PLN00143 300 DFFSKTINILRAALAFCYDKLKEI---PCIMCPQKAEGAFFALVKLN-LLLLEDIED-DMEFCLKLAKEESLIILPGVTV 374 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCCCCCeeEEEEEecc-hhhcCCCCC-HHHHHHHHHHhCCEEEeCcccc
Confidence 1223344455555555555543 3221 1223 3556666664 310 00000 234554 457889999986
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++|++++ .+++++++.+++|.+++.+
T Consensus 375 ~~~~~iRi~~~--~~~~~l~~al~rl~~~l~~ 404 (409)
T PLN00143 375 GLKNWLRITFA--VEQSSLEDGLGRLKSFCGR 404 (409)
T ss_pred CCCCeEEEEEc--CCHHHHHHHHHHHHHHHHH
Confidence 268999766 5689999999999998865
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=193.84 Aligned_cols=322 Identities=16% Similarity=0.126 Sum_probs=202.8
Q ss_pred ecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHh
Q psy14484 38 DAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHY 117 (430)
Q Consensus 38 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~ 117 (430)
||++. +++| .+|++++++.+.+... ...++.+...++++.+++.++ .+++++++||++|+..+++.+..
T Consensus 1 ~~~~~---~~~~-~~~~v~~a~~~~~~~~----~~~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~- 69 (338)
T cd06502 1 DFRSD---TVTG-PTPEMLEAMAAANVGD----DVYGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHTQ- 69 (338)
T ss_pred Ccccc---cCCC-CCHHHHHHHHhcccCC----cccCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhcC-
Confidence 56664 6777 7899999998865321 123456778899999999996 57889999999999999987753
Q ss_pred hhhcCCCCCcEEEEEcCCCCCcchhh--hccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q psy14484 118 WYNKGFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL 195 (430)
Q Consensus 118 ~~~~g~~~~~~vl~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 195 (430)
+++.|++.+++|....... .... ..+...++.+. .. .|+++|++++
T Consensus 70 -------~gd~v~~~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~-~~------------~d~~~l~~~i 117 (338)
T cd06502 70 -------PGGSVICHETAHIYTDEAGAPEFLS------------GVKLLPVPGEN-GK------------LTPEDLEAAI 117 (338)
T ss_pred -------CCCeEEEecCcceeeecCCcHHHHc------------CceEEeecCCC-Cc------------CCHHHHHHHh
Confidence 5667776666553321110 0101 11223333221 11 1889999998
Q ss_pred HhCC----CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC--CCcccccccccCCCCCcee--
Q psy14484 196 KKNH----NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFACEHAEIWPDFL-- 267 (430)
Q Consensus 196 ~~~~----~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~--g~~g~~~~~~~~~~~~d~~-- 267 (430)
++.. .++++++++. ++++|| .. +.+.+++|.++|+++|+++|+||+|..+ ...|. ........+|++
T Consensus 118 ~~~~~~~~~~~~~v~l~~-p~n~g~-~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~--~~~~~~~~~d~~~~ 192 (338)
T cd06502 118 RPRDDIHFPPPSLVSLEN-TTEGGT-VY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV--ALKTYKSGVDSVSF 192 (338)
T ss_pred hccCCCcCCcceEEEEEe-ecCCcc-cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC--CHHHHHhcCCEEEE
Confidence 7421 2567777776 666644 33 7788999999999999999999987411 11121 111112235555
Q ss_pred eeecccCCCccccEE-EEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 346 (430)
Q Consensus 268 ~~sK~l~gG~~~ig~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 346 (430)
+++|.++. +.|+ +++++++++.+... ...+++++..+++.++++.++|+.-......+++.++.+++.+.|+
T Consensus 193 s~sK~~~~---~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~~~L~ 265 (338)
T cd06502 193 CLSKGGGA---PVGAVVVGNRDFIARARRR----RKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLAEALE 265 (338)
T ss_pred eccccCCC---ccceEEECCHHHHHHHHHH----HHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 67788864 3344 55688888776540 0012244445566666666666521112345667777888888887
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH---HCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL---KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~---~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
++. . ......+.++.+... .+ ......+.+.+. ++|+.+.+.+ +++||++++.++++++++++++|+
T Consensus 266 ~~~---~-~~~~~~~~~~~v~~~-~~----~~~~~~l~~~l~~~~~~gi~~~~~~~~~lRi~~~~~~~~~~i~~~~~~l~ 336 (338)
T cd06502 266 ELG---G-LESEVQTNIVLLDPV-EA----NAVFVELSKEAIERRGEGVLFYAWGEGGVRFVTHWDTTEEDVDELLSALK 336 (338)
T ss_pred hcC---C-CcccccCCeEEEecC-Cc----cHHHHHHHHHHHHhhhCCEEEEecCCCeEEEEeecCCCHHHHHHHHHHHh
Confidence 652 1 112344556555543 22 111234455443 7899998764 899999999999999999999986
Q ss_pred H
Q psy14484 423 Q 423 (430)
Q Consensus 423 ~ 423 (430)
+
T Consensus 337 ~ 337 (338)
T cd06502 337 A 337 (338)
T ss_pred c
Confidence 5
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=191.24 Aligned_cols=315 Identities=12% Similarity=0.085 Sum_probs=201.5
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCch
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGA 104 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgt 104 (430)
-+...|+..+|+..| .+.++ .+|.+++++.+.+...... .|+.....++++.+++.++ .++++|++|+|++
T Consensus 13 ~~~~~~~~~i~l~~~--~~~~~-~p~~~~~~~~~~~~~~~~~---~Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~ 86 (335)
T PRK14808 13 PYETEKRDRTYLALN--ENPFP-FPEDLVDEVFRRLNSDTLR---IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGAD 86 (335)
T ss_pred CCCCCCCceeEecCC--CCCCC-CCHHHHHHHHHHhhhhhhh---cCCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHH
Confidence 445577899998877 66776 5788999998876432111 1222234566666666654 5788999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++..+++.. +.|++.+|+|.++...+...+. ....++....+
T Consensus 87 ~~i~~~~~~~------------d~v~v~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~------------ 129 (335)
T PRK14808 87 EIIYVMMLMF------------DRSVFFPPTYSCYRIFAKAVGA-------------KFLEVPLTKDL------------ 129 (335)
T ss_pred HHHHHHHHHh------------CcEEECCCCHHHHHHHHHHcCC-------------eEEEecCCCcC------------
Confidence 9999888754 3488899999987555444332 22233332111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIW 263 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~ 263 (430)
.++.. .+. .++++++.. ++|++|...+ .+.++ +++ ++++++|+||+|..|.. ..... .......
T Consensus 130 --~~~~~--~~~----~~~~i~i~n-P~NPTG~~~s-~~~l~---~l~-~~~~~ii~DE~Y~~f~~-~~~~~~~~~~~~v 194 (335)
T PRK14808 130 --RIPEV--NVG----EGDVVFIPN-PNNPTGHVFE-REEIE---RIL-KTGAFVALDEAYYEFHG-ESYVDLLKKYENL 194 (335)
T ss_pred --CCChh--Hcc----CCCEEEEeC-CCCCCCCCcC-HHHHH---HHH-hcCCEEEEECchhhhcC-CchHHHHHhCCCE
Confidence 11111 121 235555655 7888885554 44444 444 47999999999998731 11111 1111111
Q ss_pred CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHH
Q psy14484 264 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKI 341 (430)
Q Consensus 264 ~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l 341 (430)
.-+.+|||.++ .| +|+|++++++++++.+.. ...+++.+.+++.++.++++..+. .+..+.+++..+++
T Consensus 195 i~~~S~SK~~~l~G-lRvG~~v~~~~~~~~l~~--------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l 265 (335)
T PRK14808 195 AVIRTFSKAFSLAA-QRIGYVVSSEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERM 265 (335)
T ss_pred EEEEechhhccCcc-cceEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 22347999998 57 899999999999888865 123456677777777777753211 22233444445555
Q ss_pred HHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+.|+++ + +...++.|.|+++.+. .. . ..++.+.|.++||.+....+++|+++. ++++.+++++.|
T Consensus 266 ~~~L~~~---g-~~~~~~~g~f~~~~l~-~~----~--~~~~~~~l~~~Gi~V~~~~~~~Risi~---~~~~~~~~~~~l 331 (335)
T PRK14808 266 KSALREM---G-YRITDSRGNFVFIFME-KE----E--KERLLEHLRAKNIAVRSFREGVRITIG---KREENDMILKEL 331 (335)
T ss_pred HHHHHHC---C-CEECCCCCeEEEEeCC-Cc----c--HHHHHHHHHHCCeEEEECCCCeEEecC---CHHHHHHHHHHH
Confidence 5655543 2 2334567888887765 31 1 256889999999999988788999866 789999999998
Q ss_pred HH
Q psy14484 422 FQ 423 (430)
Q Consensus 422 ~~ 423 (430)
++
T Consensus 332 ~~ 333 (335)
T PRK14808 332 EV 333 (335)
T ss_pred Hh
Confidence 75
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=189.54 Aligned_cols=338 Identities=14% Similarity=0.109 Sum_probs=204.9
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
+++||.++... ..+|.+++++.+. ..... ..+..+...++++.++++++ .+.++++++|++++..++.+.
T Consensus 6 ~~~~~~~~~~~----~~~~~~~~a~~~~--~~~~~--~~~~~~~~~~l~~~la~~~~--~~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 6 RVVDLRSDTVT----KPTDAMRAAMANA--EVDDD--VLGYDPTALRLEEEMAKIFG--KEAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhhccccc----CCCHHHHHHHHhc--cCCCc--ccCCCHHHHHHHHHHHHHhC--CceeEEecCccHHHHHHHHHH
Confidence 46788887543 3678999998764 11111 12345667899999999995 456888899999988887775
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
... +++.|++.+++|......... ......+...++.+.+... |++++++.
T Consensus 76 ~~~-------~gd~Vl~~~~~~~~~~~~~~~----------~~~~g~~~~~v~~~~~~~~------------d~~~l~~~ 126 (353)
T PLN02721 76 CDV-------RGSEVILGDNSHIHLYENGGI----------STLGGVHPRTVKNNEDGTM------------DLDAIEAA 126 (353)
T ss_pred ccC-------CCCeEEEcCccceehhcccch----------hhhcCceeEecCCCcCCCc------------CHHHHHHH
Confidence 431 457788888876322110000 0011122233333222111 88999999
Q ss_pred HHhCC----CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccCCCCCc--ee
Q psy14484 195 LKKNH----NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPD--FL 267 (430)
Q Consensus 195 l~~~~----~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~~~~~d--~~ 267 (430)
+++.. ++++++++++ ++++.|...++.+.+++|.++|+++|+++|+||+|. ++.... ...........| ++
T Consensus 127 i~~~~~~~~~~~~~v~l~~-~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~~~d~~~~ 204 (353)
T PLN02721 127 IRPKGDDHFPTTRLICLEN-THANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVKAADSVSV 204 (353)
T ss_pred HHhccCCCCCcceEEEEec-cccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhhhCCEEEE
Confidence 97431 3678888888 666654477788889999999999999999999986 321100 000110111234 45
Q ss_pred eeecccCCCccccEE-EEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGITGGYLPLSL-VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT 346 (430)
Q Consensus 268 ~~sK~l~gG~~~ig~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 346 (430)
++||++++ ++|+ +++++++++.+.. .... ...+.......++++..+++... +...+..++.+++.+.|+
T Consensus 205 s~sK~l~~---~~G~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~ 275 (353)
T PLN02721 205 CLSKGLGA---PVGSVIVGSKSFIRKAKR---LRKT-LGGGMRQVGVLAAAALVALQENV--PKLEDDHKKAKLLAEGLN 275 (353)
T ss_pred ecccccCC---ceeeEEecCHHHHHhHHH---HHHh-cCCCeehhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 78999874 5665 5678888776543 0000 01111011122223333443211 122333456667777776
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
++..... ......+.++++.+. .... . ....++++|.++||.+.+.+ +++|+++++.++++++++++++|++++
T Consensus 276 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~-~--~~~~~~~~L~~~gi~v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~~~ 350 (353)
T PLN02721 276 QIKGLRV-NVAAVETNIVYFDIT-DGSR-I--TAEKLCKSLEEHGVLLMPGNSSRIRVVTHHQISDSDVQYTLSCFQQAA 350 (353)
T ss_pred hCCCcEE-ecCCccceEEEEEcc-CCcc-c--cHHHHHHHHHhCCcEEecCCCceEEEEecCcCCHHHHHHHHHHHHHHh
Confidence 6522211 112334567777765 3210 1 13679999999999999876 789999999999999999999999877
Q ss_pred HH
Q psy14484 426 NE 427 (430)
Q Consensus 426 ~~ 427 (430)
..
T Consensus 351 ~~ 352 (353)
T PLN02721 351 LT 352 (353)
T ss_pred hc
Confidence 53
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=191.59 Aligned_cols=336 Identities=12% Similarity=0.039 Sum_probs=210.4
Q ss_pred ECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC----CCCC-eEEEcCCch
Q psy14484 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YKLG-HCFYGSDGA 104 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~-~v~~~~sgt 104 (430)
+..|+.++||..| ...++ .+|.+.+++.+.+.....+..+.+..++++.+++.+.+.++ .+++ +|++|+|++
T Consensus 24 ~~~~~~~i~l~~~--~p~~~-~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~ 100 (393)
T TIGR03538 24 PPASKPPIALSIG--EPKHP-TPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTR 100 (393)
T ss_pred hhcCCCeEEecCC--CCCCC-CCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcH
Confidence 3467889998877 44555 47889999988765433333333345666777777766543 3564 799999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCC-cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNK-KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~-~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (430)
+|+..++++++.. ++ ..|++.+|+|.++.......+ .....++........
T Consensus 101 ~al~~~~~~l~~~-------gd~~~vlv~~P~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~-------- 152 (393)
T TIGR03538 101 EALFAFAQAVINP-------GQAPLVVMPNPFYQIYEGAALLAG-------------AEPYFLNCTAENGFL-------- 152 (393)
T ss_pred HHHHHHHHHHcCC-------CCcceEEecCCCCcchHHHHHhcC-------------CeEEEeeccccCCCC--------
Confidence 9999999987651 33 258899999987744322211 122333332111000
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--ccc----c
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFA----C 257 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~----~ 257 (430)
-|++++++.+. .+++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..+...+. ... .
T Consensus 153 --~d~~~l~~~~~---~~~k~i~l~~-p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~ 225 (393)
T TIGR03538 153 --PDFDAVPESVW---RRCQLLFVCS-PGNPTG-AVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAA 225 (393)
T ss_pred --CCHHHHHHHHh---hcceEEEEeC-CCCCcC-cccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhc
Confidence 17788888775 3566766666 788888 567788899999999999999999999987754321 111 1
Q ss_pred ccCCC--CCc---eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCH
Q psy14484 258 EHAEI--WPD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNI 330 (430)
Q Consensus 258 ~~~~~--~~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~ 330 (430)
...+. .+. +-+|||.++. | +|+|++++++++++.+.. .....+++.+.+.+.++.+++..-+ -...
T Consensus 226 ~~~~~~~~~~vi~i~S~SK~~~~~G-lRvG~~i~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 298 (393)
T TIGR03538 226 AQLGRDDFRRCLVFHSLSKRSNLPG-LRSGFVAGDAEILKAFLR------YRTYHGCAMPIPTQLASIAAWNDEQHVREN 298 (393)
T ss_pred ccccccccccEEEEecchhhcCCcc-cceEEEecCHHHHHHHHH------HHHhhccCcCHHHHHHHHHHhcChHHHHHH
Confidence 11111 122 3379997654 6 899999999998887764 1122344556777777666653100 0122
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec------------
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------ 397 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~------------ 397 (430)
.+.+++..+.+.+.|++. .+. ..+..|.++++.+. .+ ..++++.|+ ++||.+.|+
T Consensus 299 ~~~~~~~~~~~~~~L~~~--~~~--~~p~gg~f~~~~~~-~~-------~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~ 366 (393)
T TIGR03538 299 RALYREKFAAVLEILGQV--LDL--ELPDAGFYLWPKVP-GD-------DEAFARALYEEENVTVLPGRFLAREAEGVNP 366 (393)
T ss_pred HHHHHHHHHHHHHHHHhh--Ccc--cCCCeeEEEEEECC-CC-------HHHHHHHHHHHCCEEEeCCccccccccCCCC
Confidence 333444455555555432 111 12333555555543 21 256888875 579998654
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 398 -GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 398 -~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
.+++||++. .+++++++++++|++.
T Consensus 367 ~~~~~Ris~~--~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 367 GEGRVRIALV--APLEECVEAAERIRSF 392 (393)
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 246888654 4789999999999764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.4e-22 Score=195.36 Aligned_cols=328 Identities=13% Similarity=0.086 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHhhccc----cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHH-HhhhhcCCCC
Q psy14484 53 SYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSF-HYWYNKGFLN 125 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~-~~~~~~g~~~ 125 (430)
..+.+++.+.+..... +....+..++++.+++.+.+..+ .++++|++|+|+++|+..+++++. . +
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~--------~ 162 (481)
T PTZ00377 91 ADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGD--------P 162 (481)
T ss_pred HHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccC--------C
Confidence 3567777665554321 12222334566677777665432 567899999999999999999876 3 5
Q ss_pred CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHhC---CC
Q psy14484 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCAIFDLEILLKKN---HN 200 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~---~~ 200 (430)
++.|++..|+|.++.......+. ..+.++.... +.. |+++|++.+... ..
T Consensus 163 gD~Vlv~~P~y~~y~~~~~~~g~-------------~~v~v~~~~~~~~~~------------d~~~l~~~l~~~~~~~~ 217 (481)
T PTZ00377 163 SDGVMIPIPQYPLYSAAITLLGG-------------KQVPYYLDEEKGWSL------------DQEELEEAYEQAVRNGI 217 (481)
T ss_pred CCEEEECCCCchhHHHHHHHcCC-------------EEEEEEeccccCCCC------------CHHHHHHHHHHHHhcCC
Confidence 68899999999987554443332 1223332211 111 789999888642 12
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc-ccc-cc-cc-CCCCC------cee---
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFF-AC-EH-AEIWP------DFL--- 267 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g-~~~-~~-~~-~~~~~------d~~--- 267 (430)
+++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+.+.+ ..+ .+ .. .++.+ .++
T Consensus 218 ~~k~l~l~~-P~NPTG-~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~ 295 (481)
T PTZ00377 218 TPRALVVIN-PGNPTG-QVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFH 295 (481)
T ss_pred CeeEEEEEC-CCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEe
Confidence 576655555 678888 66788889999999999999999999999765432 111 11 00 01111 233
Q ss_pred eeeccc-C-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--h---cCHHH-----
Q psy14484 268 CLSKGI-T-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--K---DNILQ----- 332 (430)
Q Consensus 268 ~~sK~l-~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~---~~~~~----- 332 (430)
+|||.+ + .| +|+|++++ ++++++.+.. . ....++.+.+++.++.++|+... + +.+.+
T Consensus 296 S~SK~~~~~~G-lRiG~~~~~~~p~~li~~l~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 367 (481)
T PTZ00377 296 STSKGIIGECG-RRGGYFELTNIPPEVREQIYK------L-ASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAI 367 (481)
T ss_pred cCCcccccCCc-CceEEEEEeCCCHHHHHHHHH------H-hheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHH
Confidence 689985 4 36 89999986 8888887765 1 22334567788888877774110 0 11222
Q ss_pred --HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCccch-------hHHHHHH-HHHHHCCcEEeecC---
Q psy14484 333 --RISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIE-------TFSKKFF-VAALKNELLLRPIG--- 398 (430)
Q Consensus 333 --~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-------~~a~~~~-~~l~~~Gv~~~~~~--- 398 (430)
.++++.+.+.+.|++ .+++....++|.|+.| .+. ....... .....++ +.|.++||.+.|+.
T Consensus 368 ~~~~~~rr~~l~~~L~~---~~g~~~~~p~gg~fl~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~ 443 (481)
T PTZ00377 368 FTSLKRRAELLTDELNK---IEGVSCQPVEGAMYAFPRIE-LPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFG 443 (481)
T ss_pred HHHHHHHHHHHHHHHhc---CCCcEeecCCeeEEEEeecc-CchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccC
Confidence 234445555555544 3455555666665554 332 1100000 0012343 45567799998752
Q ss_pred -----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 399 -----NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 399 -----~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++|+++. .+++++++++++|++++.+..
T Consensus 444 ~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 444 QKPGTYHFRITIL--PPEEQIEEMVKKIKEFHESFM 477 (481)
T ss_pred CCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHH
Confidence 37898765 778899999999999987643
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-22 Score=185.04 Aligned_cols=299 Identities=16% Similarity=0.165 Sum_probs=193.1
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
.+...++||..| .++++ +|.+.+++.+.+.... .++. ...+++.+++.++ ++|++|+|+++|+..+
T Consensus 5 ~~~~~~i~l~~~--~np~~--p~~~~~a~~~~~~~~~-----~yp~--~~~l~~~ia~~~~---~~I~vt~G~~~al~~~ 70 (311)
T PRK08354 5 IREEGLIDFSAS--VNPYP--PEWLDEMFERAKEISG-----RYTY--YEWLEEEFSKLFG---EPIVITAGITEALYLI 70 (311)
T ss_pred CCccceeEecCC--CCCCC--CHHHHHHHHHHHHHhh-----cCCC--hHHHHHHHHHHHC---CCEEECCCHHHHHHHH
Confidence 345579999887 56665 5889999987765422 2322 3578888888885 5799999999999877
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
+.++. +++.|++.+|+|.++...+...+. ..+..+. |++.
T Consensus 71 ~~~~~---------~gd~vlv~~P~y~~~~~~~~~~g~---------------~~~~~~~----------------d~~~ 110 (311)
T PRK08354 71 GILAL---------RDRKVIIPRHTYGEYERVARFFAA---------------RIIKGPN----------------DPEK 110 (311)
T ss_pred HHhhC---------CCCeEEEeCCCcHHHHHHHHHcCC---------------EEeecCC----------------CHHH
Confidence 65432 567899999999887554443322 1122221 6788
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s 270 (430)
+++.++ ....+++++| +|++| ...+.+.+++|.++|+++|+++|+||+|.+|...+.. .. .....-+-+||
T Consensus 111 l~~~~~---~~~~vi~~~P--~NPTG-~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~--~~-~~~vi~~~S~S 181 (311)
T PRK08354 111 LEELVE---RNSVVFFCNP--NNPDG-KFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPES--PE-GENIIKLRTFT 181 (311)
T ss_pred HHHhhc---CCCEEEEecC--CCCCC-CccCHHHHHHHHHHhhhcCcEEEEeCcchhccccccc--cC-CCcEEEEeccH
Confidence 888775 2234555665 57788 5677888999999999999999999999988543321 11 11111233799
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
|.++ .| +|+|++++ +.+.+.. ....+..+.++.+++.+.++ +. .+++++..+++++..+.+.
T Consensus 182 K~~~l~G-lRiG~~v~---~~~~l~~--------~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~l~ 244 (311)
T PRK08354 182 KSYGLPG-IRVGYVKG---FEEAFRS--------VRMPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPLIWREKERFE 244 (311)
T ss_pred hhcCCcc-ceeeeeee---hHHHHHH--------cCCCccCCHHHHHHHHHHHH----hH-HHHHHHHHHHHHHHHHHHH
Confidence 9998 67 89999998 4444543 11233445555444443333 11 2333333444444444331
Q ss_pred cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 350 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 350 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-----~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
... ..++.|.++.+.+. + +.++++.|.++||.+.++. +++||+++ .+++.++++++|++.
T Consensus 245 ~~l---~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~l~~al~~~ 309 (311)
T PRK08354 245 KAL---YVKSDANFFIKDVG-D--------AEKFVEFLKRNGILVRDCTSFGLPGYIRFSVR---DREENEKLIRALREW 309 (311)
T ss_pred Hhc---CCCCCCcEEEEECC-C--------HHHHHHHHHHCCeEEEecccCCCCCeEEEEeC---CHHHHHHHHHHHHHh
Confidence 111 12456777766543 2 2568889999999999862 78999866 677778888777654
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-22 Score=190.22 Aligned_cols=304 Identities=12% Similarity=0.080 Sum_probs=200.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~al 111 (430)
..+++||.+| .+++|...+.+.. ..+. .|+.+. .+|++.+++.++.. +++|++++|++|++....
T Consensus 23 ~~~~i~ls~N--enp~~~~~~~~~~---~~~~--------~Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~ 88 (339)
T PRK06959 23 YDAWLDLSTG--INPHGYPVPPVPA---DAWR--------RLPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALP 88 (339)
T ss_pred hhhhceeccC--CCCCCCCCCCCCH---HHHH--------hCCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHH
Confidence 3578999999 6899976333321 1121 245554 78999999998865 479999999999998654
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
.+ .. ++ .|++.+|+|.++.......+. ..+++|. +.+.+
T Consensus 89 ~~-~~--------~g-~v~v~~P~y~~y~~~~~~~g~---------------~~~~v~~----------------~~~~~ 127 (339)
T PRK06959 89 AL-LP--------RG-RVGIAPLAYSEYAPAFARHGH---------------RVVPLDE----------------AADTL 127 (339)
T ss_pred Hh-cC--------CC-eEEEcCCCcHHHHHHHHHCCC---------------EEEeecc----------------cchhc
Confidence 43 22 33 488899999887544433221 2222331 11111
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce---ee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF---LC 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~---~~ 268 (430)
++ ....+++++| +|++| ...+.+.++++.+.|+++++++|+||+|..|....+.... .. .+++ -|
T Consensus 128 ~~------~~~~v~l~nP--nNPTG-~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~--~~-~~~vi~l~S 195 (339)
T PRK06959 128 PA------ALTHLIVVNP--NNPTA-ERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAH--TD-RPGLVVLRS 195 (339)
T ss_pred cc------cCCEEEEeCC--CCCCC-CCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhc--cC-CCCEEEEec
Confidence 11 1124566666 57788 4567777899988899999999999999977432111111 11 2333 37
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~ 346 (430)
|||.++ .| +|+|++++++++++.+.. ....++.+.+++.++.++|+..+ .+...+.+++..+++.+.|+
T Consensus 196 fSK~~gl~G-lRiGy~v~~~~li~~l~~--------~~~~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~ 266 (339)
T PRK06959 196 VGKFFGLAG-VRAGFVLAAPALLAALRD--------ALGAWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLR 266 (339)
T ss_pred ChhhcCCcc-hheEEEecCHHHHHHHHH--------hcCCCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 57 899999999999988876 23456667888888888775211 12344556666677777776
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
++ ... +...++++++.+. + +.++.+.|.++||.+..++ +++||++ ..+++++++++++|+++
T Consensus 267 ~~-g~~----~~~~~~f~~~~~~-~--------~~~l~~~l~~~GI~vr~~~~~~~lRisi--~~~~~e~~~l~~al~~~ 330 (339)
T PRK06959 267 AH-GFA----VHATPLFSWTDDP-R--------AAALHAALARRGIWTRYFAPPPSVRFGL--PADEAEWQRLEDALAEC 330 (339)
T ss_pred HC-CCC----ccCcceEEEEeCC-C--------HHHHHHHHHhCCeEEEECCCCCeEEEEC--CCCHHHHHHHHHHHHHH
Confidence 65 221 1123555555433 2 3578999999999998764 6889974 24788999999999887
Q ss_pred HHHh
Q psy14484 425 FNEV 428 (430)
Q Consensus 425 l~~~ 428 (430)
++.+
T Consensus 331 ~~~~ 334 (339)
T PRK06959 331 VPTL 334 (339)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=188.84 Aligned_cols=325 Identities=14% Similarity=0.151 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhhc--cccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 54 YINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 54 ~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.|.+++++.+... ..+.+..+..++...|++++++.++ ...++|++|.|+.+|+..++...+. +.+.
T Consensus 48 fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~--------~GDe 119 (420)
T KOG0257|consen 48 FVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLLN--------PGDE 119 (420)
T ss_pred HHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHcC--------CCCE
Confidence 6778888888764 2234434445677888888888654 2345899999999999999998887 7889
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
|++++|.|..+.......++.+.+ ++....+. ..+..++ ..|.+.+|.++. +++++++++
T Consensus 120 Vii~eP~fd~Y~~~~~maG~tpv~-------------v~~~~~~g---~~~s~~~-~~D~~~le~~~t---~kTk~Ii~n 179 (420)
T KOG0257|consen 120 VIVFEPFFDCYIPQVVMAGGTPVF-------------VPLKPKEG---NVSSSDW-TLDPEELESKIT---EKTKAIILN 179 (420)
T ss_pred EEEecCcchhhhhHHhhcCCccee-------------eccccccc---cccCccc-cCChHHHHhhcc---CCccEEEEe
Confidence 999999999997776666654432 22110000 0011111 238899999996 678888888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---ccccccCCC---CCceeeeecccCC-CccccE
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEHAEI---WPDFLCLSKGITG-GYLPLS 281 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~~~~~~---~~d~~~~sK~l~g-G~~~ig 281 (430)
. ++|++| -+.+.+.|++|+++|++||+++|.||||.-+...|. .++.. .|. ...+-++||+++- | |++|
T Consensus 180 t-PhNPtG-kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~asl-Pgm~ertitvgS~gKtf~~TG-WrlG 255 (420)
T KOG0257|consen 180 T-PHNPTG-KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASL-PGMYERTITVGSFGKTFGVTG-WRLG 255 (420)
T ss_pred C-CCCCcC-cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecC-CchhheEEEeccccceeeeee-eeee
Confidence 8 899999 667889999999999999999999999997766764 23332 333 3345578998775 6 8999
Q ss_pred EEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH---hhc-------CHHHHHHHHHHHHHHHHHchhcC
Q psy14484 282 LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF---NKD-------NILQRISQDMKKITKALTSLITH 351 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~---~~~-------~~~~~~~~~~~~l~~~l~~l~~~ 351 (430)
|+++++.++..... ......+..+...+.|..+++..- .++ ++.+.++++.+.+.+.|+++ +.
T Consensus 256 W~igp~~L~~~~~~------vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~ 328 (420)
T KOG0257|consen 256 WAIGPKHLYSALFP------VHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEEL-GL 328 (420)
T ss_pred eeechHHhhhhHHH------HhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 99998888776665 334445555555555555554321 111 24566788888888888877 32
Q ss_pred CCeeeEeecceEEEE-EEee-cCCccchhH-----HHHHHHHHHHC-CcEEeec------------CCEEEEeCCCCCCH
Q psy14484 352 PKIINFRQKGMIWAF-DVII-EDPEQIETF-----SKKFFVAALKN-ELLLRPI------------GNTVYLMPPYILNK 411 (430)
Q Consensus 352 ~~~~~~~~~g~~~~~-~~~~-~~~~~~~~~-----a~~~~~~l~~~-Gv~~~~~------------~~~lR~~~~~~~t~ 411 (430)
+ ...++|.++.+ ++.. .+.+..+.. ...++++|.++ |+.+.|. ++.+|| .++-++
T Consensus 329 ~---v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~--~~~k~~ 403 (420)
T KOG0257|consen 329 K---VTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRF--CFCKAD 403 (420)
T ss_pred c---cccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHH--HHHhhH
Confidence 2 33456666554 3320 000000000 13566766544 7777763 123444 556778
Q ss_pred HHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIF 422 (430)
Q Consensus 412 e~i~~~~~~l~ 422 (430)
+.++..+++|+
T Consensus 404 ~~L~~a~e~l~ 414 (420)
T KOG0257|consen 404 ETLRKAIERLK 414 (420)
T ss_pred HHHHHHHHHHh
Confidence 88888888887
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=193.06 Aligned_cols=296 Identities=14% Similarity=0.089 Sum_probs=196.6
Q ss_pred CCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 74 LTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
...+..+.+++.+...++ ...+++++++|+++|+..++..+.. .+++|++..++|+++.......
T Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--------~g~~vl~~~~~~~~~~~~~~~~----- 103 (350)
T cd00609 37 GLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLN--------PGDEVLVPDPTYPGYEAAARLA----- 103 (350)
T ss_pred CcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCC--------CCCEEEEcCCCchhHHHHHHHC-----
Confidence 334555666666665542 2367899999999999999998754 4678888888887764333221
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
......++........ .+.+.++... .++++++++++ +++++|. ..+.+.+++|.++
T Consensus 104 --------~~~~~~i~~~~~~~~~----------~~~~~~~~~~---~~~~~~v~i~~-~~~~tG~-~~~~~~l~~l~~~ 160 (350)
T cd00609 104 --------GAEVVPVPLDEEGGFL----------LDLELLEAAK---TPKTKLLYLNN-PNNPTGA-VLSEEELEELAEL 160 (350)
T ss_pred --------CCEEEEEecccccCCc----------cCHHHHHhhc---CccceEEEEEC-CCCCCCc-ccCHHHHHHHHHH
Confidence 1223344433221110 0113444433 36789999999 9999995 5567889999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccc----cccCCCCCceeeeecccC-CCccccEEEEEcH-HHHHhhhccCCccccccc
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFA----CEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHS 305 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~----~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~ 305 (430)
|+++|+++|+||+++++...+.... ....+....+.+++|.++ +| .++|++++++ ++.+.+.. ....
T Consensus 161 ~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g-~~~G~i~~~~~~~~~~~~~------~~~~ 233 (350)
T cd00609 161 AKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG-LRIGYLIAPPEELLERLKK------LLPY 233 (350)
T ss_pred HHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcc-cceEEEecCHHHHHHHHHH------HHHh
Confidence 9999999999999997765443221 111222222347899998 56 7999999998 78877765 2233
Q ss_pred CCCCCCHHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHH
Q psy14484 306 HSYSGNPLACCAALATLEIF--NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 383 (430)
Q Consensus 306 ~t~~~~~~~~~aa~~~l~~~--~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~ 383 (430)
.++..+..++.++..+++.. ..+...++++++.+++.+.|++.... .. .....|.++++.+. ... .+..+
T Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~-~~~~~g~~~~~~~~-~~~-----~~~~~ 305 (350)
T cd00609 234 TTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPL-VV-VKPSGGFFLWLDLP-EGD-----DEEFL 305 (350)
T ss_pred cccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc-cCCCccEEEEEecC-CCC-----hHHHH
Confidence 45667777777777777654 22445566777777888887765211 11 23455777777665 320 13456
Q ss_pred HHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 384 FVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 384 ~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
.+.|.+.||.+.++ +.++|++++.. ++|++.++++|+
T Consensus 306 ~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 306 ERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred HHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 67777889998875 36899998877 999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=188.99 Aligned_cols=335 Identities=8% Similarity=0.020 Sum_probs=209.1
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcCC--CCC-eEEEcCCchHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASAVEVA 110 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~--~~~-~v~~~~sgteA~~~a 110 (430)
.++||..|.. ... .++.+.+++.+.+.... .+....+..++++.+++.+.+.++. .++ +|++|+|+++|+..+
T Consensus 25 ~~i~l~~g~p--~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~ 101 (387)
T PRK07777 25 GAVNLGQGFP--DED-GPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAA 101 (387)
T ss_pred CeEEccCCCC--CCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHH
Confidence 5688887753 232 25677787777665321 1121223345566677766665543 344 699999999999998
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC-CCCCCCChhHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARCAIF 189 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~ 189 (430)
+..... +++.|++..++|+++.......+. ....++..+.. .. ..|++
T Consensus 102 ~~~~~~--------~gd~vli~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~~d~~ 150 (387)
T PRK07777 102 VLGLVE--------PGDEVLLIEPYYDSYAAVIAMAGA-------------HRVPVPLVPDGRGF----------ALDLD 150 (387)
T ss_pred HHHhcC--------CCCEEEEeCCCchhhHHHHHHCCC-------------EEEEeecCCccCCC----------cCCHH
Confidence 886653 567899999999876433222211 11223322110 00 01788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-cccccc-CCCC-Cc-
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEH-AEIW-PD- 265 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~-~~~~-~d- 265 (430)
+|++.+. +++++|++++ ++|++|. ..+.+.+++|.++|+++++++|+||+|.++...+. ...+.. .+.. .+
T Consensus 151 ~l~~~~~---~~~~~v~l~~-p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i 225 (387)
T PRK07777 151 ALRAAVT---PRTRALIVNS-PHNPTGT-VLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTV 225 (387)
T ss_pred HHHHhcC---cccEEEEEcC-CCCCCCc-cCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEE
Confidence 8888875 4567777777 8889985 55788899999999999999999999987754332 111111 1111 12
Q ss_pred -eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 266 -~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+.+|||.++ .| +|+|++++++++.+.+.. .....++..+.+.+.++..++...+ .....+.++++.+.+
T Consensus 226 ~~~S~SK~~g~~G-lRiG~~~~~~~l~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l 298 (387)
T PRK07777 226 TISSAAKTFNVTG-WKIGWACGPAPLIAAVRA------AKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRL 298 (387)
T ss_pred EEeechhhccCcC-ceeEEEecCHHHHHHHHH------HHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 347999998 46 899999999998877764 1222344445555555555553211 122345566667777
Q ss_pred HHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeecC----------CEEEEeCCCCC
Q psy14484 342 TKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG----------NTVYLMPPYIL 409 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~----------~~lR~~~~~~~ 409 (430)
.+.|+++ . +....+.|.+ +++.+. .... .. +.++++.|+ ++||.+.|+. +.+|++++ .
T Consensus 299 ~~~L~~~-~---~~~~~~~g~~~~~~~~~-~~~~-~~--~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~--~ 368 (387)
T PRK07777 299 AAGLAEA-G---FEVHDSAGTYFLCADPR-PLGY-DD--GTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFC--K 368 (387)
T ss_pred HHHHHhC-C---CCccCCCcceEEEeccc-ccCC-CC--HHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEec--C
Confidence 7777654 2 2222344454 444543 2111 11 367899986 5799998741 36888765 4
Q ss_pred CHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTF 425 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l 425 (430)
+++++++++++|++..
T Consensus 369 ~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 369 RDDTLDEAIRRLRALR 384 (387)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 7999999999998764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=189.69 Aligned_cols=318 Identities=11% Similarity=0.006 Sum_probs=204.1
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~ 108 (430)
++..++|+.++. +....+|.+.+++++...... +..+.+..++++++++.+.+..+ .++++|++|+|+++++.
T Consensus 19 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~ 94 (357)
T TIGR03539 19 HPDGIVDLSVGT---PVDPVPPLIRAALAAAADAPG-YPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA 94 (357)
T ss_pred CCCCeEEccCCC---CCCCCCHHHHHHHHHHHhhCC-CCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH
Confidence 566789988863 223346788888877543222 22223444667788888776543 56789999999999999
Q ss_pred HHHHHH-HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 109 VALKMS-FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 109 ~al~~~-~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
.++.++ .. +++.|++.+++|.++.......+. ..+.++ +
T Consensus 95 ~~~~~l~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~---------------~~~~v~-----------------~ 134 (357)
T TIGR03539 95 WLPTLLGLG--------PGDTVVIPELAYPTYEVGALLAGA---------------TPVAAD-----------------D 134 (357)
T ss_pred HHHHHHcCC--------CCCEEEECCCCcHHHHHHHHhcCC---------------EEeccC-----------------C
Confidence 887765 33 678899999999877443222111 223332 3
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-ccc--CC-CC
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AE-IW 263 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~--~~-~~ 263 (430)
++.++ +.++++++++. ++|++| ...+.+.+++|.++|++||+++|+||+|..+...+.... +.. .+ ..
T Consensus 135 ~~~l~------~~~~~~v~~~~-p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 206 (357)
T TIGR03539 135 PTELD------PVGPDLIWLNS-PGNPTG-RVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDH 206 (357)
T ss_pred hhhcC------ccCccEEEEeC-CCCCcC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCcc
Confidence 33322 24577777777 888888 556778899999999999999999999987755443211 110 00 11
Q ss_pred ---CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHH
Q psy14484 264 ---PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDM 338 (430)
Q Consensus 264 ---~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~ 338 (430)
.-+.+|||.++ .| +|+|++++++++++.+.. ......++.+.+++.++.++|+..+ .....+.++++.
T Consensus 207 ~~vi~~~S~SK~~~~~G-~R~G~~i~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 279 (357)
T TIGR03539 207 TGLLAVHSLSKRSNLAG-YRAGFVAGDPALVAELLT------VRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARR 279 (357)
T ss_pred ccEEEEeccccccCCCc-eeEEEEecCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11237999975 46 899999999998887754 2223345667777777766664211 122344455555
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCH
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNK 411 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~ 411 (430)
+++.+.|++. + +...++.|.++.+... .. . +..+.+.|.++||.+.|+ .+++|++++ .++
T Consensus 280 ~~~~~~L~~~---g-~~~~~p~~~~~~~~~~-~~---~---~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~--~~~ 346 (357)
T TIGR03539 280 AQLKPALEKA---G-FRIDHSEAGLYLWATR-GE---D---AWDTVDRLAELGILVAPGDFYGPAGSQHVRVALT--ATD 346 (357)
T ss_pred HHHHHHHHHc---C-CCCcCCCccEEEEEEC-CC---C---HHHHHHHHHhCCEEECCccccCCCCCCeEEEEec--CCH
Confidence 5666666543 2 2223344555444333 21 1 356888899999999875 268899765 478
Q ss_pred HHHHHHHHHH
Q psy14484 412 NEIQHMTSAI 421 (430)
Q Consensus 412 e~i~~~~~~l 421 (430)
+++++++++|
T Consensus 347 ~~i~~~~~~l 356 (357)
T TIGR03539 347 ERIAAAVARL 356 (357)
T ss_pred HHHHHHHHhh
Confidence 9999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-22 Score=190.29 Aligned_cols=298 Identities=13% Similarity=0.160 Sum_probs=193.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.+.++|..|. ++++. | +.+. ...... .++++...++++.+++.++.+++++++++|+++++..+.++
T Consensus 17 ~~~~~~~~~~--~~~~~--~-~~~~---~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~ 83 (330)
T TIGR01140 17 EDWLDFSTGI--NPLGP--P-VPPI---PASAWA-----RYPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL 83 (330)
T ss_pred hheeEccccC--CCCCC--C-hhhc---chHHHh-----hCCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH
Confidence 4578988874 55553 3 2221 111111 23333347888888888877788999999999999986555
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+ . ++ +|++.+|+|+.+....... +...+.+| |++++++
T Consensus 84 l-~--------~g-~vl~~~p~y~~~~~~~~~~---------------g~~~~~~~-----------------d~~~l~~ 121 (330)
T TIGR01140 84 L-A--------PG-RVLVLAPTYSEYARAWRAA---------------GHEVVELP-----------------DLDRLPA 121 (330)
T ss_pred h-C--------CC-eEEEeCCCcHHHHHHHHHc---------------CCEEEEeC-----------------CHHHHHh
Confidence 3 2 34 6888899998764332211 11233333 5677877
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---eee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---CLS 270 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~s 270 (430)
.++ ++.++++.. ++|++| ..++.+.+++|.++|+++|+++|+||+|.++....... ...+..++++ +||
T Consensus 122 ~~~----~~~~v~i~~-p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~~~~~~i~~~S~S 193 (330)
T TIGR01140 122 ALE----ELDVLVLCN-PNNPTG-RLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLA--PQAARFPGLVVLRSLT 193 (330)
T ss_pred hcc----cCCEEEEeC-CCCCCC-CCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchh--hHhccCCCEEEEEecc
Confidence 774 233555555 567888 56788889999999999999999999998775332111 1111123333 799
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHH
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQDMKKITKAL 345 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~l~~~l 345 (430)
|.++ .| +|+|++++++++++.+.. ....+..+.+++.++.+.++ +.++ .++++++.+++.+.|
T Consensus 194 K~~g~~G-~R~G~i~~~~~~~~~l~~--------~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~L 261 (330)
T TIGR01140 194 KFFGLAG-LRLGFVVAHPALLARLRE--------ALGPWTVNGPARAAGRAALA---DTAWQAATRARLAAERARLAALL 261 (330)
T ss_pred hhhcCch-hhhhheeCCHHHHHHHHh--------cCCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 56 899999999999888776 23355667777777766665 3333 344555555555555
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~ 418 (430)
+++ +.+...++.|.|+++.+. . ..++++.|+++||.+.|+ .+++|++++ ...++ +.++
T Consensus 262 ~~~---~~~~~~~~~~~f~~~~~~-~--------~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~-~~~~ 326 (330)
T TIGR01140 262 ARL---GGLEVVGGTALFLLVRTP-D--------AAALHEALARRGILIRDFDNFPGLDPRYLRFALP--TDEEN-DRLE 326 (330)
T ss_pred HhC---CCceECCCCCeEEEEEcC-C--------HHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEec--CHHHH-HHHH
Confidence 543 433333455677776655 2 257899999999999985 157999765 33344 7777
Q ss_pred HHH
Q psy14484 419 SAI 421 (430)
Q Consensus 419 ~~l 421 (430)
++|
T Consensus 327 ~~l 329 (330)
T TIGR01140 327 EAL 329 (330)
T ss_pred Hhh
Confidence 665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=189.56 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=211.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~ 109 (430)
+..++||..+. ..++ .+|.+.+++.+.+.... .+....+..++++.+++.+.+.++ .++++|++|+|+++|+..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~ 105 (388)
T PRK07337 29 GRDIIHMGIGE--PDFT-APEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL 105 (388)
T ss_pred CCCEEEeCCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH
Confidence 44678877763 3333 36788999888775321 111122334555666666665443 467899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCA 187 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 187 (430)
++.+... +++.|++.+|+|.++......... ....++.+. .+.. |
T Consensus 106 ~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------------~ 152 (388)
T PRK07337 106 ACLALVE--------RGDEVLMPDPSYPCNRHFVAAAEG-------------RPVLVPSGPAERFQL------------T 152 (388)
T ss_pred HHHHhcC--------CCCEEEEeCCCchhhHHHHHHcCC-------------EEEEeecCCccCCcC------------C
Confidence 8887754 668899999999876433222111 122333321 1111 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|+++++++|+||+|.++...+.... .....++++
T Consensus 153 ~~~l~~~~~---~~~~~v~l~~-p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~--~~~~~~~vi 225 (388)
T PRK07337 153 AADVEAAWG---ERTRGVLLAS-PSNPTG-TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVS--ALSLGDDVI 225 (388)
T ss_pred HHHHHhhcC---ccceEEEEEC-CCCCCC-cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcC--hhhccCCEE
Confidence 788888775 3556666655 677888 566788899999999999999999999998765443111 112234443
Q ss_pred ---eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH--Hh-hcCHHHHHHHHHHH
Q psy14484 268 ---CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI--FN-KDNILQRISQDMKK 340 (430)
Q Consensus 268 ---~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~--~~-~~~~~~~~~~~~~~ 340 (430)
+|||.++ .| +|+|++++++++++.+.. .......+.+.+++.++..+++. .+ -....+.++++.++
T Consensus 226 ~~~S~SK~~~~~G-~RiG~~~~~~~l~~~l~~------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~ 298 (388)
T PRK07337 226 TINSFSKYFNMTG-WRLGWLVVPEALVGTFEK------LAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDF 298 (388)
T ss_pred EEEechhhcCCch-hheeeeecCHHHHHHHHH------HHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Confidence 6899996 46 899999999998887765 11222334567777776666541 00 01223444555555
Q ss_pred HHHHHHchhcCCCeee-EeecceEEEEEEeecCCc-cchhHHHHHHHHH-HHCCcEEeec--------CCEEEEeCCCCC
Q psy14484 341 ITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPE-QIETFSKKFFVAA-LKNELLLRPI--------GNTVYLMPPYIL 409 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~-~~~~~a~~~~~~l-~~~Gv~~~~~--------~~~lR~~~~~~~ 409 (430)
+.+.|++. +.... .+..|.++++.+. .... ...+ +.++++.+ .++||.+.|+ .+++|++++.
T Consensus 299 ~~~~L~~~---~~~~~~~p~~g~f~~~~~~-~~~~~~~~~-~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~-- 371 (388)
T PRK07337 299 IVPALESL---GFKVPVMPDGAFYVYADCR-GVAHPAAGD-SAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYAT-- 371 (388)
T ss_pred HHHHHHhc---CCccccCCCeeEEEEEecc-cccCCCCCC-HHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecC--
Confidence 65665543 22111 2334677777765 3110 0001 35677764 5679999874 2588997763
Q ss_pred CHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTF 425 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l 425 (430)
+++++.+.+++|.+++
T Consensus 372 ~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 372 SMSRLEEAVARLGKLF 387 (388)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6899999999998764
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-21 Score=187.92 Aligned_cols=335 Identities=16% Similarity=0.087 Sum_probs=210.1
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccc----cccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAV 107 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~ 107 (430)
..++||..+.. .+ ..++.+.+++.+.+..... +....+..+.+..+++.+.+.. ++++++|++++|+++++
T Consensus 33 ~~~~~l~~g~p--~~-~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al 109 (394)
T PRK06836 33 DNVFDFSLGNP--SV-PPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGAL 109 (394)
T ss_pred CCeEEecCcCC--CC-CCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHH
Confidence 46789877632 22 2467888888876653211 1111222345555666665443 34678999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARC 186 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 186 (430)
..+++.++. +++.|++.+++|.++...... ...++..++.+.+ +..
T Consensus 110 ~~~~~~l~~--------~gd~Vli~~p~~~~~~~~~~~-------------~g~~v~~v~~~~~~~~~------------ 156 (394)
T PRK06836 110 NVALKAILN--------PGDEVIVFAPYFVEYRFYVDN-------------HGGKLVVVPTDTDTFQP------------ 156 (394)
T ss_pred HHHHHHhcC--------CCCEEEEcCCCCccHHHHHHH-------------cCCEEEEEecCCccCcC------------
Confidence 999887754 567899999999876433222 1223344443322 122
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh------cCCEEEEeccccCCCCcccccc--cc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN------YNIHLIADEIAVGCGRTGKFFA--CE 258 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~------~gi~li~DEv~~g~g~~g~~~~--~~ 258 (430)
|++++++.++ ++++++++.. ++|++| ...+.+.+++|.++|++ ||+++|+||+|..+...+.... ..
T Consensus 157 d~~~l~~~~~---~~~~~v~~~~-p~NPtG-~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~ 231 (394)
T PRK06836 157 DLDALEAAIT---PKTKAVIINS-PNNPTG-VVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFK 231 (394)
T ss_pred CHHHHHhhcC---cCceEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHH
Confidence 7899999885 4677888877 888888 55667779999999999 8999999999997754432111 11
Q ss_pred cCCCCCceeeeecccC-CCccccEEEEEcHHHHHh--hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14484 259 HAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNS--IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRIS 335 (430)
Q Consensus 259 ~~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~ 335 (430)
..+...-+-+|||.++ .| +|+|++++++++.+. +... ..........+..+.+.+.++...++ +....+.++
T Consensus 232 ~~~~~i~~~S~SK~~~~pG-lRiG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~l~---~~~~~~~~~ 306 (394)
T PRK06836 232 YYDNSIVVYSFSKSLSLPG-ERIGYIAVNPEMEDADDLVAA-LVFANRILGFVNAPALMQRVVAKCLD---ATVDVSIYK 306 (394)
T ss_pred ccCcEEEEecchhhccCcc-eeeEEEecCHHHhhhHHHHHH-HHHHhhccccccCCHHHHHHHHHHhC---ChHHHHHHH
Confidence 1111112236899998 57 899999998876322 1100 00000011123445565655554443 222244556
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYIL 409 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~ 409 (430)
+..+.+.+.|++. . +....+.| .++++.+. . . . ..++++.|.++||.+.|+ ++++||+++ .
T Consensus 307 ~~r~~l~~~L~~~---g-~~~~~~~gg~~~~~~~~-~-~--~---~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~--~ 373 (394)
T PRK06836 307 RNRDLLYDGLTEL---G-FECVKPQGAFYLFPKSP-E-E--D---DVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC--V 373 (394)
T ss_pred HHHHHHHHHHHhC---C-CEeecCCceEEEEEeCC-C-C--C---HHHHHHHHHhCCEEEECchhcCCCCeEEEEec--C
Confidence 6666666666553 2 22334444 45544444 2 1 1 356788889999999986 378999876 5
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
+++++++++++|++++++
T Consensus 374 ~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 374 DTETIERSLPAFEKLAKE 391 (394)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999999875
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=190.64 Aligned_cols=348 Identities=14% Similarity=0.088 Sum_probs=206.4
Q ss_pred CCCEEEecccccccccCCCC-CHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA 106 (430)
.|+.++++..|.. ...+.. ++.+.+++.+.+..... +....+..++++.+++++.+..+ .++++|++|+|+++|
T Consensus 30 ~g~~~~~~~~G~p-~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~a 108 (433)
T PRK06855 30 LGVKITWENIGDP-IAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDA 108 (433)
T ss_pred ccccccccccCCC-cccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHH
Confidence 3556667644421 112444 56777788877644221 12223344667777777776533 567899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 184 (430)
+..++. +.. +++.|++.+|+|+++........+ .....++... .+..
T Consensus 109 l~~~~~-l~~--------~Gd~Vlv~~P~Y~~~~~~~~~~~g------------~~~v~v~~~~~~~~~~---------- 157 (433)
T PRK06855 109 IAKIYG-LLR--------REARVIGPSPAYSTHSSAEAAHAG------------YPPVTYRLDPENNWYP---------- 157 (433)
T ss_pred HHHHHH-hcC--------CCCeEEEeCCCCchHHHHHHHhcC------------CeEEEEecccccCCCC----------
Confidence 998875 332 568899999999986432221111 0112222211 1111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cc-ccC-C
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHA-E 261 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~-~~~-~ 261 (430)
|+++|++.++.. .+++++++.. ++|++| ...+.+.+++|.++|++||+++|.||+|..+.+.+... .+ ... +
T Consensus 158 --d~~~l~~~~~~~-~~~~~i~l~~-P~NPTG-~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~ 232 (433)
T PRK06855 158 --DLDDLENKVKYN-PSIAGILLIN-PDNPTG-AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD 232 (433)
T ss_pred --CHHHHHHHHhcC-CCceEEEEEC-CCCCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCc
Confidence 789999998643 2445555445 678888 67788889999999999999999999999885544311 11 111 1
Q ss_pred -CCCceeeeecccC-CCccccEEEEEc-----H---HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH-
Q psy14484 262 -IWPDFLCLSKGIT-GGYLPLSLVMTT-----D---KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI- 330 (430)
Q Consensus 262 -~~~d~~~~sK~l~-gG~~~ig~~~~~-----~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~- 330 (430)
...-+-+|||.++ .| +|+|+++++ + .+++.+.. . .....+.+.+++.++.++++.-.-+.+
T Consensus 233 ~~~I~~~S~SK~~~~pG-lRiG~ii~p~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~ 304 (433)
T PRK06855 233 VPGIALKGISKELPWPG-SRCGWIEVYNADKDEVFKKYINSILN------A-KMIEVCSTTLPQMAIPRIMSHPEYKNYL 304 (433)
T ss_pred CCeEEEecCccccCCCc-ceEEEEEEeCCchhhHHHHHHHHHHH------h-hccccCCChHHHHHHHHhhcCCcHHHHH
Confidence 1112347999996 67 899999973 2 22333322 1 112334566777777666641100122
Q ss_pred ---HHHHHHHHHHHHHHHHchhcCCCeeeEeecce-EEEEEEeecCC--------cc---chh-----------HHHHHH
Q psy14484 331 ---LQRISQDMKKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDP--------EQ---IET-----------FSKKFF 384 (430)
Q Consensus 331 ---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~--------~~---~~~-----------~a~~~~ 384 (430)
.+.++++.+.+.+.|++ .+.+...++.|. ++++.+. ... .. ... ...+++
T Consensus 305 ~~~~~~~~~r~~~~~~~L~~---~~~~~~~~p~gg~~~w~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (433)
T PRK06855 305 KERNKRYEKRSNIAYEKLKD---VPGLKVNRTNGAFYMTVVFE-DGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFV 380 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCeeccCCCeeEEEeeccc-cccccccccCCcchhhhHHHHHHHHhcCCCchHHHH
Confidence 23334444444444443 334333455564 4555554 321 00 000 023455
Q ss_pred HH-HHHCCcEEeecC------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 385 VA-ALKNELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 385 ~~-l~~~Gv~~~~~~------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.. +.+.||.+.|+. ..+|++++. .++++|++.+++|.+++.+.+
T Consensus 381 ~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 381 YYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred HHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHHHHh
Confidence 44 567799999862 358987764 579999999999999998754
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=188.21 Aligned_cols=318 Identities=11% Similarity=0.002 Sum_probs=202.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~ 108 (430)
++..++||..+. +....+|.+.+++.+...... +..+.+..++++.+++.+.+..+ .++++|++|+|+++++.
T Consensus 25 ~~~~~i~l~~~~---p~~~~~~~~~~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~ 100 (364)
T PRK07865 25 HPDGIVDLSVGT---PVDPVPPVIQEALAAAADAPG-YPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVA 100 (364)
T ss_pred cCCCEEEcCCCC---CCCCCCHHHHHHHHHHHhhCC-CCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHH
Confidence 455688988763 333346888888876543321 22223334666778888776643 45789999999999999
Q ss_pred HHHHHH-HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 109 VALKMS-FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 109 ~al~~~-~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
.++.++ +. +++.|++.+++|.++.......+. ..+.++ +
T Consensus 101 ~~~~~l~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~---------------~~~~~~-----------------~ 140 (364)
T PRK07865 101 WLPTLLGLG--------PGDVVVIPELAYPTYEVGARLAGA---------------TVVRAD-----------------S 140 (364)
T ss_pred HHHHHHcCC--------CCCEEEECCCCcccHHHHHHhcCC---------------EEEecC-----------------C
Confidence 877765 33 568899999999876433322111 222232 2
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-ccc--CCCC-
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEH--AEIW- 263 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~--~~~~- 263 (430)
+++++. .++++++++. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.... +.. .+..
T Consensus 141 ~~~l~~------~~~~~v~~~~-p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 212 (364)
T PRK07865 141 LTELGP------QRPALIWLNS-PSNPTG-RVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDH 212 (364)
T ss_pred hhhCCc------ccceEEEEcC-CCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCcc
Confidence 233221 3567777777 888998 556678899999999999999999999997755443211 111 0111
Q ss_pred Cc---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHH
Q psy14484 264 PD---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDM 338 (430)
Q Consensus 264 ~d---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~ 338 (430)
.. +-+|||.++ .| +|+|++++++++++.+.. .....++..+.+.+.++.++|+..+ .+...+.++++.
T Consensus 213 ~~~i~~~S~SK~~~~~G-lRiG~i~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 285 (364)
T PRK07865 213 TGLLAVHSLSKQSNLAG-YRAGFVAGDPALVAELLE------VRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRR 285 (364)
T ss_pred ceEEEEeechhccCCCc-eeeEEEecCHHHHHHHHH------HHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 12 337999985 46 899999999998887764 1223345567777776666664211 122334445555
Q ss_pred HHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILN 410 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t 410 (430)
+.+.+.|++. + +....+.|.+ +++.+. .+ ...+.+.|.++||.+.|+ .+++|++++ .+
T Consensus 286 ~~l~~~L~~~---g-~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~--~~ 351 (364)
T PRK07865 286 AVLRPALEAA---G-FRVDHSEAGLYLWATRG-ED-------CWDTVAWLAERGILVAPGDFYGPAGAQHVRVALT--AT 351 (364)
T ss_pred HHHHHHHHHc---C-CcccCCCccEEEEEeCC-CC-------HHHHHHHHHHCCEEEeCccccCcCCCCEEEEEec--CC
Confidence 5566665543 2 2222344554 444333 21 246788899999999874 258899765 37
Q ss_pred HHHHHHHHHHHH
Q psy14484 411 KNEIQHMTSAIF 422 (430)
Q Consensus 411 ~e~i~~~~~~l~ 422 (430)
++++++++++|+
T Consensus 352 ~~~~~~~~~~l~ 363 (364)
T PRK07865 352 DERIAAAVERLA 363 (364)
T ss_pred HHHHHHHHHHhh
Confidence 899999999885
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=188.27 Aligned_cols=309 Identities=11% Similarity=0.154 Sum_probs=195.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
.+..++||..| .++++ .+|.+.+++.+.+..... ..|+.....++++.+++.++.++++|++|+|+++++..++
T Consensus 16 ~~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~---~~Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~ 89 (337)
T PRK03967 16 EGNYRIWLDKN--ENPFD-LPEELKEEIFEELKRVPF---NRYPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLV 89 (337)
T ss_pred CCCceEEecCC--CCCCC-CCHHHHHHHHHHhhcCcc---ccCCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 34567888877 45664 568899998887754211 1334444567888888888778899999999999998766
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+.. +++.|++.+|+|..+...... . ...+..++....+.. |++++
T Consensus 90 ~~~----------~gd~V~v~~P~y~~~~~~~~~-~------------g~~~~~v~~~~~~~~------------d~~~l 134 (337)
T PRK03967 90 KLF----------EGKHIVITPPTFGMYSFYAKL-N------------GIPVIDVPLKEDFTI------------DGERI 134 (337)
T ss_pred HHh----------CCCeEEEeCCChHHHHHHHHH-c------------CCeEEEeecCCCCCc------------CHHHH
Confidence 643 357899999999755332211 1 122233333222222 67777
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce---ee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF---LC 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~---~~ 268 (430)
++.+ .+++++++.. ++|++|...+ .++|.++++ +++++|+||+|.+|.. .+... .....+++ -+
T Consensus 135 ~~~~----~~~~~v~~~~-P~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~~-~~~~~--~~~~~~~vi~l~S 201 (337)
T PRK03967 135 AEKA----KNASAVFICS-PNNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFSG-KSLIG--LIDEYPNLILLRT 201 (337)
T ss_pred HHhc----cCCCEEEEeC-CCCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhcc-cchHH--HHhhCCCEEEEec
Confidence 7654 2344555555 7888886665 456666674 6999999999987742 12111 11112333 37
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALT 346 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 346 (430)
|||.++ .| +|+|++++++++++.+.. ....++.+.+++.++..+|+..+. .+..+.+.+..+.+.+.|.
T Consensus 202 ~SK~~~l~G-lRiG~iv~~~~~i~~~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 272 (337)
T PRK03967 202 FSKAFGLAG-IRAGYAIANEEIIDALYR--------IKPPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELG 272 (337)
T ss_pred chHhhcchh-hhheeeecCHHHHHHHHh--------hcCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998 67 899999999999888775 223456677777777776652110 1122333344444444444
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC----CEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~----~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+. ..+..|.++++.+ .+.+.|.++||.+.+++ +++|+++. ++++.++++++|+
T Consensus 273 ~~-------~~~~~~~~~~~~~-------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~~---~~~~~~~l~~~l~ 329 (337)
T PRK03967 273 EY-------AYPSDANFLLLKL-------------DAYDYLLENGIVVRKLSGRLEGHIRVTVG---KREENDEFIKALK 329 (337)
T ss_pred cC-------cCCCCCcEEEEhH-------------HHHHHHHHCCEEEEeCCCCCCCeEEEecC---CHHHHHHHHHHHH
Confidence 32 1234455544322 26788889999997652 58999866 6778888888887
Q ss_pred HHHH
Q psy14484 423 QTFN 426 (430)
Q Consensus 423 ~~l~ 426 (430)
++..
T Consensus 330 ~~~~ 333 (337)
T PRK03967 330 EIKE 333 (337)
T ss_pred HHHH
Confidence 7654
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=193.20 Aligned_cols=306 Identities=16% Similarity=0.103 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 76 HKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.+.+++.+.+.++ .++++|++|+|+++++..++.+++. +++.|++.+|+|.++........+
T Consensus 89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~--------pGd~Vlv~~P~Y~~~~~~~~~~~g--- 157 (468)
T PLN02450 89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAE--------PGDAFLLPTPYYPGFDRDLKWRTG--- 157 (468)
T ss_pred HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCC--------CCCEEEECCCCCCchHHHHhhcCC---
Confidence 3566777777765433 4678999999999999999988875 678999999999887443221111
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLV 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l 228 (430)
...+.++........ .|++++++++.+. +.+++++++.. ++|++| ...+.+.+++|
T Consensus 158 ---------~~~v~v~~~~~~~~~----------~~~~~le~~~~~~~~~~~~~k~v~l~n-P~NPTG-~~~s~e~l~~l 216 (468)
T PLN02450 158 ---------VEIVPIHCSSSNGFQ----------ITESALEEAYQQAQKLNLKVKGVLITN-PSNPLG-TTTTRTELNLL 216 (468)
T ss_pred ---------cEEEEEecCCccCCc----------CCHHHHHHHHHHHHhcCCCeeEEEEec-CCCCCC-cccCHHHHHHH
Confidence 122233321111100 1667888777642 23667666665 778888 66788899999
Q ss_pred HHHHHhcCCEEEEeccccCCCCcccccc--cccC------C--CCCc---eeeeecccC-CCccccEEEEEcHH-HHHhh
Q psy14484 229 REICNNYNIHLIADEIAVGCGRTGKFFA--CEHA------E--IWPD---FLCLSKGIT-GGYLPLSLVMTTDK-IYNSI 293 (430)
Q Consensus 229 ~~l~~~~gi~li~DEv~~g~g~~g~~~~--~~~~------~--~~~d---~~~~sK~l~-gG~~~ig~~~~~~~-~~~~~ 293 (430)
.++|++|++++|+||+|.++.+.+..+. .... + .... +-+|||.++ .| +|+|+++++++ +.+.+
T Consensus 217 l~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~G-lRiG~li~~~~~l~~~~ 295 (468)
T PLN02450 217 VDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPG-FRVGAIYSNDEMVVSAA 295 (468)
T ss_pred HHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCC-ccEEEEEECCHHHHHHH
Confidence 9999999999999999997654442211 1111 0 1112 347999997 57 89999999754 45554
Q ss_pred hccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEE
Q psy14484 294 YYKNNINIFLHSHSYSGNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFD 367 (430)
Q Consensus 294 ~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~ 367 (430)
.. .......+.+++.++.++|+.-. -+...+++++..+.+.+.|+++ . +...++. |.++++.
T Consensus 296 ~~--------~~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~---g-i~~~~~~~g~flwi~ 363 (468)
T PLN02450 296 TK--------MSSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA---G-IKCLKSNAGLFCWVD 363 (468)
T ss_pred HH--------HhhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc---C-CcccCCCceEEEEEE
Confidence 43 11112346677777766664210 0112344444555555555443 2 2233444 4466666
Q ss_pred EeecCCccc-hhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 368 VIIEDPEQI-ETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 368 ~~~~~~~~~-~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+. ...... .....++.+.|+ +.||.+.|+ .+++|++++. .+++++++++++|++++.+.
T Consensus 364 l~-~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~ 431 (468)
T PLN02450 364 MR-HLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVESD 431 (468)
T ss_pred ch-HhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHHhc
Confidence 64 321111 011235667765 479999986 2588986553 57899999999999988754
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=191.15 Aligned_cols=342 Identities=11% Similarity=0.044 Sum_probs=216.0
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC--CC----CCHHHHHHHHHHHhhcCCC-CCeEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS--NL----THKPVIKLSEKLSSLTQYK-LGHCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~----~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgte 105 (430)
+..|+|..+ .|..++.|.+++.+.+.+....... .+ ..+..+++++.++++++.. +++|+|++|+++
T Consensus 32 ~~iyLd~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~ 105 (424)
T PLN02855 32 KLVYLDNAA------TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATE 105 (424)
T ss_pred CeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHH
Confidence 357888643 2445788999998887654221111 11 1133568888999999864 479999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++..+++...... ..+++.|++.++.|++........ ......++..++.+.....
T Consensus 106 al~~i~~~~~~~~----~~~gd~vl~~~~~~~s~~~~~~~~---------a~~~g~~v~~v~~~~~~~~----------- 161 (424)
T PLN02855 106 AINLVAYTWGLAN----LKPGDEVILSVAEHHSNIVPWQLV---------AQKTGAVLKFVGLTPDEVL----------- 161 (424)
T ss_pred HHHHHHHHhhhhc----CCCcCEEEECCCccHHHHHHHHHH---------HHHcCCEEEEEecCCCCCc-----------
Confidence 9998887531100 014567888777665432111110 0111223344444322111
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|++++++.++ +++++|++.. +++++|.+.| +++|.++|+++|+++|+|++|. ++.. . ++.....+|
T Consensus 162 -~~~~l~~~i~---~~t~lv~i~~-~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~--~--~~~~~~~~d 227 (424)
T PLN02855 162 -DVEQLKELLS---EKTKLVATHH-VSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHM--P--VDVQTLGAD 227 (424)
T ss_pred -CHHHHHHHhc---cCceEEEEeC-ccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCc--C--CCchhcCCC
Confidence 7889998885 4788888888 9999998888 9999999999999999999996 4322 1 222233468
Q ss_pred eee--eecccCCCccccEEEEEcHHHHHhhhcc--CCcc---cc---------cccCCC-CCCHHHHHHHHHHHHHHhh-
Q psy14484 266 FLC--LSKGITGGYLPLSLVMTTDKIYNSIYYK--NNIN---IF---------LHSHSY-SGNPLACCAALATLEIFNK- 327 (430)
Q Consensus 266 ~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~--~~~~---~~---------~~~~t~-~~~~~~~~aa~~~l~~~~~- 327 (430)
+++ +.|. .|. ..+|++++++++.+.+.+- +... .+ ...... +.+..+.++..++++.+.+
T Consensus 228 ~~~~s~~K~-~gp-~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~ 305 (424)
T PLN02855 228 FLVASSHKM-CGP-TGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI 305 (424)
T ss_pred EEEeecccc-cCC-CccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh
Confidence 774 5694 332 3589999999887665421 0000 00 000011 2344555566667776544
Q ss_pred --cCHHHHHHHHHHHHHHHHHchhcCCCeee----EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec---
Q psy14484 328 --DNILQRISQDMKKITKALTSLITHPKIIN----FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI--- 397 (430)
Q Consensus 328 --~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~--- 397 (430)
++..++.+++.+++++.|+++.....+.. ...++.++.+.+. .. . ...+.+.|.++ ||.++.+
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~-~~----~--~~~v~~~L~~~~gI~v~~g~~c 378 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVE-GI----H--PTDLSTFLDQQHGVAIRSGHHC 378 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEEC-Cc----C--HHHHHHHhcccCCEEEechhhh
Confidence 34556777788888888766522222211 1123456667665 21 1 35688888887 9988753
Q ss_pred ----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 ----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++|+++++++|++|++++++.|++++..
T Consensus 379 ~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 379 AQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred hHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 257999999999999999999999998865
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=192.44 Aligned_cols=310 Identities=12% Similarity=0.125 Sum_probs=197.5
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
...+|+..| .+++|-. +.+ ..... ..|+.....+|++.+++.+++++++|++|+|+++++..++++
T Consensus 31 ~~~~~l~~n--e~~~~~~-~~~------~~~~~-----~~Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 31 RGDIWINAN--ESPFNNE-YKL------DLARL-----NRYPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCcEEeeCC--CCCCCCC-hhh------hhHHh-----ccCCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHH
Confidence 455787776 5666632 222 11111 134444457888888888888999999999999999999987
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
... ++++.|++..|+|..+...+... ..++..++.+..+.. |++.+++
T Consensus 97 ~~~-------~g~d~vlv~~P~y~~y~~~~~~~-------------g~~v~~v~~~~~~~~------------~~~~l~~ 144 (354)
T PRK04635 97 FCE-------PGQDSIACFGPTYGMYAISAETF-------------NVGVKALPLTADYQL------------PLDYIEQ 144 (354)
T ss_pred hcC-------CCCCeEEEcCCChHHHHHHHHHc-------------CCEEEEEecCCCCCC------------CHHHHHh
Confidence 764 24478999999998654332221 123334444322222 5666652
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---eeeee
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLCLS 270 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~~s 270 (430)
+ ++++++++.. ++|++|.+. +.+.+++|.+.|+ ++++|+||+|..|...... .+.....++ +-+||
T Consensus 145 -~----~~~~li~i~n-P~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s~--~~~~~~~~~~iv~~S~S 213 (354)
T PRK04635 145 -L----DGAKLVFICN-PNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSV--ADLLASYPNLVVLRTLS 213 (354)
T ss_pred -c----cCCCEEEEeC-CCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCcch--HHHHhhCCCEEEEechH
Confidence 3 2566666767 889999655 5555666666655 4999999999877422111 111111233 33799
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHH
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 346 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 346 (430)
|.++ .| +|+|++++++++++.+.. ....++.+.+.+.++.++|+.... ....+.+++..+++.+.|+
T Consensus 214 K~~~l~G-lRlG~~i~~~~~~~~l~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~ 284 (354)
T PRK04635 214 KAFALAG-ARCGFTLANEELIEILMR--------VIAPYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALS 284 (354)
T ss_pred HHhhhhH-HHHhhhhCCHHHHHHHHh--------hcCCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 46 899999999999887765 223455566666666666642101 1223344555566666665
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
++ +.+...++.|.++++.+. + +.++.+.|.++||.+..+ ++++|++++ +++++++++++|
T Consensus 285 ~~---~~~~~~~~~g~f~~~~~~-~--------~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~---~~e~~~~l~~al 349 (354)
T PRK04635 285 MY---GGAKVLEGNGNYVLAKFD-D--------VDAVFKALWDAGIVARAYKDPRLANCIRFSFS---NRAETDKLIGLI 349 (354)
T ss_pred hC---CCceECCCCCcEEEEECC-C--------HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---CHHHHHHHHHHH
Confidence 54 322333456777776654 2 256888899999999764 368999854 899999999999
Q ss_pred HHH
Q psy14484 422 FQT 424 (430)
Q Consensus 422 ~~~ 424 (430)
++-
T Consensus 350 ~~~ 352 (354)
T PRK04635 350 RNQ 352 (354)
T ss_pred HHh
Confidence 763
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-21 Score=185.78 Aligned_cols=325 Identities=11% Similarity=0.070 Sum_probs=208.6
Q ss_pred CCCCCHHHHHHHHHHHhhccccccCCCC-------CHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHHHHHHHHHhhh
Q psy14484 48 FGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 48 lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~al~~~~~~~~ 119 (430)
.|..+|.+.+++.+.+....... ..+. .....++++.+++.++.. .+++++++|+++|++.+++.+....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~- 85 (373)
T cd06453 8 TSQKPQPVIDAIVDYYRHYNANV-HRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRAN- 85 (373)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCC-CCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcC-
Confidence 45567899999988875542211 1111 134567888899998766 6799999999999999998776410
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 199 (430)
.++++|++.++.|.+......... .....++..++.+..... |++++++.+.
T Consensus 86 ----~~g~~vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~------------d~~~l~~~l~--- 137 (373)
T cd06453 86 ----KPGDEIVTSVMEHHSNIVPWQQLA---------ERTGAKLKVVPVDDDGQL------------DLEALEKLLT--- 137 (373)
T ss_pred ----CCCCEEEECcchhHHHHHHHHHHH---------hhcCcEEEEeecCCCCCc------------CHHHHHHHhc---
Confidence 034678887766654311100000 011123344544422222 7899999885
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 277 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~ 277 (430)
+++++|++.. +++++|...+ +++|.++|+++|+++|+|++++ ++.. ........+|++++| |.+++
T Consensus 138 ~~~~~v~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~----~~~~~~~~~d~~~~s~~K~~~~-- 205 (373)
T cd06453 138 ERTKLVAVTH-VSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHM----PVDVQDLGCDFLAFSGHKMLGP-- 205 (373)
T ss_pred CCceEEEEeC-cccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCce----eeeccccCCCEEEeccccccCC--
Confidence 4678888888 8888998877 8999999999999999999986 3322 112223457999888 98876
Q ss_pred cccEEEEEcHHHHHhhhccCCcc----c-------cc----ccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHH
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNIN----I-------FL----HSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMK 339 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~----~-------~~----~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~ 339 (430)
.++|++++++++.+.+.+..... . +. .....+.+..++.+..++++.+.+.+ ..++.+++.+
T Consensus 206 ~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~ 285 (373)
T cd06453 206 TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTA 285 (373)
T ss_pred CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 46899999998877665410000 0 00 00011234445555566677665543 3455666777
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------------CCEEEEeCC
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------GNTVYLMPP 406 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------------~~~lR~~~~ 406 (430)
++.+.|+++.....+......+.++.+.+. .. . +.++.+.|.++||.+.++ ++.+|++++
T Consensus 286 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~ 358 (373)
T cd06453 286 YALERLSEIPGVRVYGDAEDRAGVVSFNLE-GI---H---PHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFG 358 (373)
T ss_pred HHHHHHhcCCCeEEeCCccccCCeEEEEEC-Cc---C---HHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEec
Confidence 777777655222112122234667777665 31 1 357889999999988642 368999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAI 421 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l 421 (430)
..+|++|+++++++|
T Consensus 359 ~~~t~~di~~~~~~l 373 (373)
T cd06453 359 LYNTEEEIDALVEAL 373 (373)
T ss_pred CCCCHHHHHHHHhhC
Confidence 999999999999864
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-21 Score=187.65 Aligned_cols=336 Identities=13% Similarity=0.048 Sum_probs=211.5
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~ 109 (430)
.|+|..+ .|..++.+.+++.+.+........... .....+++++.+++.++.++++|++++|+++++..
T Consensus 2 ~yld~a~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~ 75 (381)
T PRK02948 2 IYLDYAA------TTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYL 75 (381)
T ss_pred EeccCCC------CCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHH
Confidence 3666443 345688999999888765321111111 12456788899999998788899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++..+.... ..+++.|++ +...|.......... .....++..++.+..... |++
T Consensus 76 ~~~~~~~~~----~~~g~~vv~-~~~~h~s~~~~~~~~---------~~~g~~v~~v~~~~~~~~------------d~~ 129 (381)
T PRK02948 76 AIQSLLNAL----PQNKKHIIT-TPMEHASIHSYFQSL---------ESQGYTVTEIPVDKSGLI------------RLV 129 (381)
T ss_pred HHHHHHHhc----cCCCCEEEE-CCcccHHHHHHHHHH---------HhCCCEEEEEeeCCCCCC------------CHH
Confidence 988775421 013455555 444444322211100 111223334443322222 789
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL-- 267 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~-- 267 (430)
+|++.++ +++.+|+++. +++++|.+.+ +++|.++|+++|+++|+|++++ ++..+ .....+ ..|++
T Consensus 130 ~l~~~l~---~~~~lv~~~~-~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~--~~~~~~--~~d~~~~ 196 (381)
T PRK02948 130 DLERAIT---PDTVLASIQH-ANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLP--IDVFEM--GIDSLSV 196 (381)
T ss_pred HHHHhcC---CCCEEEEEEC-CcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-ccccc--cCcccC--CCCEEEe
Confidence 9998885 4678888888 9999998888 9999999999999999998876 65432 222223 35666
Q ss_pred eeecccCCCccccEEEEEcHHH-HHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH
Q psy14484 268 CLSKGITGGYLPLSLVMTTDKI-YNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITK 343 (430)
Q Consensus 268 ~~sK~l~gG~~~ig~~~~~~~~-~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~ 343 (430)
+++|.++. ..+|++++++++ +..+...+ ..+. ...++.+.++.+++.++++.+. .++..++++++.+++++
T Consensus 197 s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~~~~~~---~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~ 271 (381)
T PRK02948 197 SAHKIYGP--KGVGAVYINPQVRWKPVFPGTTHEKG---FRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLE 271 (381)
T ss_pred cHHhcCCC--CcEEEEEEcCCCCCCCcccCCCCCCC---cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56697653 247889888765 11111100 0001 1233557777888888887542 24556778888888888
Q ss_pred HHHchhcCCCeeeE---eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------------------
Q psy14484 344 ALTSLITHPKIINF---RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 397 (430)
Q Consensus 344 ~l~~l~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------------------- 397 (430)
.|+++ ........ .....++.+... . . . ..++...|.++||.++.+
T Consensus 272 ~L~~~-~~~v~~~~~~~~~~~~i~~~~~~-~-~---~--~~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~ 343 (381)
T PRK02948 272 QIQTL-PLPIEVEGHSTSCLPHIIGVTIK-G-I---E--GQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEE 343 (381)
T ss_pred HHhcC-CCCEEEeCCCccCcCCEEEEEeC-C-C---C--HHHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHH
Confidence 88776 22211110 011223333333 2 1 1 245777788899999842
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++..+|++|++++++.|++++.++
T Consensus 344 ~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~ 375 (381)
T PRK02948 344 AKQFVRFSFGQQTTKDQIDTTIHALETIGNQF 375 (381)
T ss_pred hCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999999999988764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-21 Score=185.09 Aligned_cols=342 Identities=11% Similarity=0.049 Sum_probs=216.8
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC------CCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL------THKPVIKLSEKLSSLTQYK-LGHCFYGSDGASA 106 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA 106 (430)
..|+|..+ .|..++.+.+++.+.+.........+. .....+++++.++++++.. ++++++++|++++
T Consensus 19 ~~yld~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~ 92 (403)
T TIGR01979 19 LVYLDSAA------TSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTES 92 (403)
T ss_pred eEEEeCcc------ccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHH
Confidence 46888543 444578899999887754321111011 1134568888999999866 6799999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++..+.... ..+++.|++.++.|+........ .......+...++.+.+...
T Consensus 93 l~~~~~~~~~~~----~~~g~~vl~~~~~~~s~~~~~~~---------~~~~~g~~~~~v~~~~~~~~------------ 147 (403)
T TIGR01979 93 INLVAYSWGDSN----LKAGDEIVISEMEHHANIVPWQL---------LAERTGATLKFIPLDDDGTL------------ 147 (403)
T ss_pred HHHHHHHhhhhc----CCCCCEEEECcchhhHHHHHHHH---------HHHhcCcEEEEEecCCCCCC------------
Confidence 998887653210 01456788777766643211111 00011223345544432222
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 266 (430)
|++++++.+. ++++++++.. +++++|...+ +++|.++|+++|+++|+|++|+ ++.. ..... ...+|+
T Consensus 148 ~~~~l~~~i~---~~~~lv~~~~-~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~--~~~~~--~~~~d~ 214 (403)
T TIGR01979 148 DLDDLEKLLT---EKTKLVAITH-VSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM--PVDVQ--ALDCDF 214 (403)
T ss_pred CHHHHHHHhc---cCCeEEEEEc-ccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc--ccCcc--ccCCCE
Confidence 7889988885 5688888888 8999998888 9999999999999999999986 4321 12222 334677
Q ss_pred ee--eecccCCCccccEEEEEcHHHHHhhhcc--CC-c-ccc------c----c-cCCCCCCHHHHHHHHHHHHHHhh--
Q psy14484 267 LC--LSKGITGGYLPLSLVMTTDKIYNSIYYK--NN-I-NIF------L----H-SHSYSGNPLACCAALATLEIFNK-- 327 (430)
Q Consensus 267 ~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~--~~-~-~~~------~----~-~~t~~~~~~~~~aa~~~l~~~~~-- 327 (430)
++ ++|.++. ..+|++++++++.+.+.+. +. . ... . . ...-+.+..++++..++++.+.+
T Consensus 215 ~~~s~~K~~gp--~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g 292 (403)
T TIGR01979 215 YVFSGHKMYGP--TGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIG 292 (403)
T ss_pred EEEecccccCC--CCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhC
Confidence 65 5596643 3589999998877665420 00 0 000 0 0 00012345556666677776643
Q ss_pred -cCHHHHHHHHHHHHHHHHHchhcCCCeeeE--eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------
Q psy14484 328 -DNILQRISQDMKKITKALTSLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 397 (430)
Q Consensus 328 -~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------- 397 (430)
+...++..++.+++.+.|+++.....+... ..++.++.+.+. .. . ..++.+.|.++||.+.++
T Consensus 293 ~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~-~~----~--~~~~~~~L~~~gI~v~~g~~~~~~~ 365 (403)
T TIGR01979 293 LENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVE-GV----H--PHDVGTILDEEGIAVRSGHHCAQPL 365 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeC-Cc----C--HHHHHHHHhhCCEEEcchhhhhHHH
Confidence 345677777888888877765222111111 123667777765 31 1 246788899999988752
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++||+++..+|++|+++++++|+++++.+
T Consensus 366 ~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 366 MRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=201.86 Aligned_cols=345 Identities=13% Similarity=0.077 Sum_probs=221.7
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC---eEEEcCCc
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG---HCFYGSDG 103 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~v~~~~sg 103 (430)
++.+.+|..++++..| .+.++ .+|.+++++.+.+..... .....+...++++++++.++...+ +|++++|+
T Consensus 690 ~~~~~~g~~vI~Lsin--E~d~p-pPp~V~eAi~eal~~~~~---s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs 763 (1082)
T PLN02672 690 SVSGSQESSLIHMDVD--ESFLP-VPSAVKASIFESFVRQNI---SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTS 763 (1082)
T ss_pred CCcccCCCCEEEEeCC--CCCCC-CCHHHHHHHHHHHhhcCC---CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCH
Confidence 3566678889998877 56666 688999999987755322 122345678999999988766554 79999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChh
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSAN 181 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 181 (430)
++++..+++++.. +++.|++..|+|..+.......+. ....++... .+..
T Consensus 764 ~elL~lll~aLl~--------pGD~VLVp~PtY~~Y~~~a~~~Ga-------------~vv~Vpl~~e~gf~l------- 815 (1082)
T PLN02672 764 LALFNKLVLCCVQ--------EGGTLCFPAGSNGTYVSAAKFLKA-------------NFRRIPTKSSDGFKL------- 815 (1082)
T ss_pred HHHHHHHHHHHcC--------CCCEEEEeCCChHHHHHHHHHcCC-------------EEEEEecccccCCCC-------
Confidence 9999988888775 678999999999887554443222 223333321 1221
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc---ccc
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF---ACE 258 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~---~~~ 258 (430)
|+++|+++++.. .+..+++++| .+|++| ..++.+.+++|.++|++||+++|+||+|.++.+.+... .+.
T Consensus 816 -----D~d~Le~al~~~-~~~~I~L~nP-nhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~ 887 (1082)
T PLN02672 816 -----TAKTLASTLETV-KKPWVYISGP-TINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLK 887 (1082)
T ss_pred -----CHHHHHHHhccC-CCCEEEEECc-CCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchh
Confidence 778899888631 2346778888 668888 67788999999999999999999999999776554321 110
Q ss_pred ----cC-CCCC--ce---eeeecccCCCccccEEEEEcH-HHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 259 ----HA-EIWP--DF---LCLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 259 ----~~-~~~~--d~---~~~sK~l~gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
.. ...+ .+ -+|||.++.+++|+|++++++ ++++.+.. .. ....+..+..++.++.+++.. +
T Consensus 888 s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~------~~~~s~~~~~~q~Aaaaalall~~-~ 960 (1082)
T PLN02672 888 SILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHS------APGLSRPHSTLKYTIKKLLGLKNQ-K 960 (1082)
T ss_pred hHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHH------hhhhcCCCcHHHHHHHHHHHHHhc-c
Confidence 11 1111 22 268987765338999999964 47777764 10 111122223333333332210 1
Q ss_pred hc-------CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCC-------ccc------hhHHHHHHHH
Q psy14484 327 KD-------NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP-------EQI------ETFSKKFFVA 386 (430)
Q Consensus 327 ~~-------~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~------~~~a~~~~~~ 386 (430)
.. +..+.++++.+++.+.|++. ++...++.|.|+.|... ... ... .-.+..+++.
T Consensus 961 ~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~----Gi~v~~PeGGFfLwl~l-~~~l~~~~~~~~~~~~~~~~lds~efae~ 1035 (1082)
T PLN02672 961 SSDLLDGVAEQKKILKSRAERLKETLEAC----GWDVLEPQGGISMVAKP-SAYLGKTVKLKSIDGDTGIKLDSSNIREA 1035 (1082)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCeEecCCcEEEEEEEc-cccccccccccccccccccCCCHHHHHHH
Confidence 12 22334555566666666543 23345667777666432 100 000 0014679999
Q ss_pred HHHC-CcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 387 ALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 387 l~~~-Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
|+++ ||.+.|+ .+++||++. .+++++++++++|++.++-
T Consensus 1036 LLee~GVaV~PGs~FG~~g~~RIsfa--~~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672 1036 ILKSTGLCINSSSWTGIPGYCRFSFA--LEDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred HHHcCCEEEecCcccCCCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 8876 9999985 268888655 5888999999999986653
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=188.32 Aligned_cols=344 Identities=14% Similarity=0.111 Sum_probs=208.7
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~ 108 (430)
.|..++||..|.. .++++ .+|++.+++.+.+.....+....+..++++.+++.+.... +.++++|++++|+++++.
T Consensus 31 ~~~~~i~l~~g~p-~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~ 109 (404)
T PRK09265 31 EGHKILKLNIGNP-APFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIV 109 (404)
T ss_pred cCCCeEEecCCCC-CcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHH
Confidence 5678899887643 34565 4678888888766543222222222344455555543221 467889999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARC 186 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (430)
.+++.+.. +++.|++.+++|..+......... ....++.+. .+..
T Consensus 110 ~~~~~~~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~~------------ 156 (404)
T PRK09265 110 MAMQALLN--------NGDEVLVPAPDYPLWTAAVSLSGG-------------KPVHYLCDEEAGWFP------------ 156 (404)
T ss_pred HHHHHhCC--------CCCEEEEeCCCCcChHHHHHHcCC-------------EEEEEecccccCCCC------------
Confidence 99887754 567899999999876443332221 112222211 1111
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCCc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~d 265 (430)
|++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.++...+... ......-...
T Consensus 157 d~~~l~~~~~---~~~~~v~l~~-P~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 231 (404)
T PRK09265 157 DLDDIRSKIT---PRTKAIVIIN-PNNPTG-AVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLL 231 (404)
T ss_pred CHHHHHHhcc---ccceEEEEEC-CCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCce
Confidence 7788888875 3566666555 677888 55667889999999999999999999998775443211 1111110111
Q ss_pred ---eeeeecccCC-CccccEEEEE--cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHH---
Q psy14484 266 ---FLCLSKGITG-GYLPLSLVMT--TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNIL--- 331 (430)
Q Consensus 266 ---~~~~sK~l~g-G~~~ig~~~~--~~~~----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~--- 331 (430)
+-+|||.++. | +|+|++++ ++.+ .+.+.. ....+++.+.+++.++.++|...+. ..+.
T Consensus 232 vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 303 (404)
T PRK09265 232 CVTFNGLSKAYRVAG-FRVGWMVLSGPKKHAKGYIEGLDM-------LASMRLCANVPAQHAIQTALGGYQSINELILPG 303 (404)
T ss_pred EEEEecchhhccCcc-cceEEEEEeCchHHHHHHHHHHHH-------HhccccCCCcHHHHHHHHHhcCchhHHHHHHHH
Confidence 2368999954 6 89999996 3433 222221 1123455677777777777642110 1121
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEE
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYL 403 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~ 403 (430)
+++.+..+.+.+.|+++ +.+....+. |.++++.+. ............+.+.+.++||.+.|+ .+++|+
T Consensus 304 ~~~~~~r~~~~~~L~~~---~~~~~~~p~~g~~l~~~~~-~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri 379 (404)
T PRK09265 304 GRLYEQRDRAWELLNAI---PGVSCVKPKGALYAFPKLD-PKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRI 379 (404)
T ss_pred HHHHHHHHHHHHHHhcC---CCCcccCCCcceEEEEEec-ccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEE
Confidence 23444455555555543 333334444 555555665 321000111245677788999999875 258898
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++ ..+++++++++++|++++...
T Consensus 380 ~~--~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 380 VT--LPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred Ee--CCCHHHHHHHHHHHHHHHHHh
Confidence 76 468999999999999988753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-21 Score=187.51 Aligned_cols=343 Identities=14% Similarity=0.050 Sum_probs=207.4
Q ss_pred CCCEEEecccccccc-cCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA 106 (430)
.|..++|+..|.... +.=..++++.+++.+.+..... +....+..+.++.+++.+....+ ..++++++|+|+++|
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~a 108 (403)
T TIGR01265 29 PEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQA 108 (403)
T ss_pred cCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHH
Confidence 467889988774321 1112468899999887754221 11111222334444444443222 246789999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 184 (430)
+..+++++.. +++.|++..++|..+....... ..+...++.+. .+..
T Consensus 109 l~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~-------------g~~~~~~~~~~~~~~~~---------- 157 (403)
T TIGR01265 109 IEICIEALAN--------PGANILVPRPGFPLYDTRAAFS-------------GLEVRLYDLLPEKDWEI---------- 157 (403)
T ss_pred HHHHHHHhCC--------CCCEEEEeCCCchhHHHHHHHc-------------CCEEEEecCCcccCCcc----------
Confidence 9999998764 5678999999987653322211 12223333321 1111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIW 263 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~ 263 (430)
|++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+..+ ....+.-.
T Consensus 158 --d~~~l~~~~~---~~~~~v~i~~-p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 230 (403)
T TIGR01265 158 --DLDGLEALAD---EKTVAIVVIN-PSNPCG-SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASI 230 (403)
T ss_pred --CHHHHHHHhC---cCccEEEEec-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccC
Confidence 7888888875 3466666666 678888 56677779999999999999999999999886554321 11111111
Q ss_pred Cce---eeeecccCC-CccccEEEEEc--HH-----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---
Q psy14484 264 PDF---LCLSKGITG-GYLPLSLVMTT--DK-----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN--- 329 (430)
Q Consensus 264 ~d~---~~~sK~l~g-G~~~ig~~~~~--~~-----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~--- 329 (430)
+.+ -+|||.++. | +|+|++++. ++ +.+.+.. ....+++.+.+++.++..+|+. ..+.
T Consensus 231 ~~vi~~~S~SK~~~~pG-lRiG~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~ 301 (403)
T TIGR01265 231 VPVLSLGGISKRWVVPG-WRLGWIIIHDPHGIFRDTVLQGLKN-------LLQRILGPATIVQGALPDILEN-TPQEFFD 301 (403)
T ss_pred CcEEEEeecccccCCCc-ceEEEEEEeCchhhhHHHHHHHHHH-------HhhhhcCCChHHHHHHHHHHHh-ChHHHHH
Confidence 222 379998654 6 899999884 22 3333322 1112345677777777776652 1122
Q ss_pred -HHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec-----CCEE
Q psy14484 330 -ILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI-----GNTV 401 (430)
Q Consensus 330 -~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~-----~~~l 401 (430)
..+.+++..+.+.+.|+.. +++... +..|.++++.+. ...........++++.+ .++||.+.|+ .+++
T Consensus 302 ~~~~~~~~~~~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~-~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~i 377 (403)
T TIGR01265 302 GKISVLKSNAELCYEELKDI---PGLVCPKPEGAMYLMVKLE-LELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWV 377 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCceecCCCceeEEEEecc-ccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeE
Confidence 3344444555555555443 333322 345667777765 32100000135677775 5789999885 3689
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
|++++ ..++.+++++++|.+++.+
T Consensus 378 Ris~~--~~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 378 RITIT--VPESMLEEACSRIKEFCER 401 (403)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHHh
Confidence 99766 4688999999999998865
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=188.04 Aligned_cols=303 Identities=14% Similarity=0.137 Sum_probs=190.4
Q ss_pred CCCHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC
Q psy14484 74 LTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
+...++.++++.+.+.++ .++++|++|+|+++|++.++.+++. +++.|++..|.|.++........+
T Consensus 96 G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~--------pGD~Vlv~~P~Y~~f~~~~~~~~g- 166 (447)
T PLN02607 96 GLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILAD--------PGDALLVPTPYYPGFDRDLRWRTG- 166 (447)
T ss_pred chHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCC--------CCCEEEEcCCCCcchHHHHHhcCC-
Confidence 334566778877776543 5778999999999999998887765 678999999999887543221111
Q ss_pred ccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
.+.+.++....... ..|++++++++++. +.+++++++.. ++|++| ..++++.++
T Consensus 167 -----------~~vv~v~~~~~~~f----------~~~~~~le~a~~~a~~~~~~vk~lll~n-P~NPtG-~~~s~e~l~ 223 (447)
T PLN02607 167 -----------VKIVPIHCDSSNNF----------QVTPQALEAAYQEAEAANIRVRGVLITN-PSNPLG-ATVQRSVLE 223 (447)
T ss_pred -----------cEEEEEeCCCCCCC----------cCCHHHHHHHHHHHHHhCCCeeEEEEeC-CCCCcC-cccCHHHHH
Confidence 11222322211100 01778888888653 34677777766 778888 677889999
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCcccccc--cc---cCCC-C-Cc----eeeeecccC-CCccccEEEEE-cHHHHHhh
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGKFFA--CE---HAEI-W-PD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSI 293 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~~~~--~~---~~~~-~-~d----~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~ 293 (430)
+|.++|++|++++|+||+|..+.+.+..+. .+ ..+. . ++ +.+|||.++ .| +|+|+++. ++++.+.+
T Consensus 224 ~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G-lRvG~ivs~n~~l~~~~ 302 (447)
T PLN02607 224 DILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG-FRVGTIYSYNDKVVTTA 302 (447)
T ss_pred HHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc-ceEEEEEEcCHHHHHHH
Confidence 999999999999999999987533322221 11 1110 1 22 337999997 57 89999998 56676655
Q ss_pred hccCCcccccccCCC-CCCHHHHHHHHHHHHHHhhcCHH--------HHHHHHHHHHHHHHHchhcCCCeeeEee-cceE
Q psy14484 294 YYKNNINIFLHSHSY-SGNPLACCAALATLEIFNKDNIL--------QRISQDMKKITKALTSLITHPKIINFRQ-KGMI 363 (430)
Q Consensus 294 ~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~~~~~~~~~--------~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~ 363 (430)
.. . ..+ ..+.+++.++...|+ ++++. +++++..+.+.+.|++. . +...++ .|+|
T Consensus 303 ~~--------~-~~~~~~s~~~q~~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~---g-i~~~~~~ag~f 366 (447)
T PLN02607 303 RR--------M-SSFTLVSSQTQHLLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRA---G-IECLKGNAGLF 366 (447)
T ss_pred HH--------H-hhcCCCCHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhC---C-CCcccCCeeEE
Confidence 44 1 122 235555555555443 33332 23333444444455443 2 223334 4677
Q ss_pred EEEEEeecCCc-cchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPE-QIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 364 ~~~~~~~~~~~-~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++.+. .... ...+...++++++++ .||.+.|+ .+++|++++. .+++++++++++|.+++.+
T Consensus 367 vw~~L~-~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 367 CWMNLS-PLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred EEEEch-HhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 777775 3211 011112467777765 69999885 2688886552 4789999999999998864
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=189.37 Aligned_cols=336 Identities=10% Similarity=0.019 Sum_probs=203.4
Q ss_pred EEEecccccccccCCCCC--HHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCCeE--EEcCCchHH
Q psy14484 35 RYLDAISSWWVNLFGHSN--SYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHC--FYGSDGASA 106 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v--~~~~sgteA 106 (430)
..+||..|....+-+..+ +.+.+++.+.+.... .+....+..++++.+++++.+... .++++| ++|+|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 568888875333323333 678888777654321 122233444566677776655432 256776 999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--CCCCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDSRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 184 (430)
+..++++..... +++.|++.+|+|.++.......+. ..+.++. ++.+..
T Consensus 107 l~~~~~~l~~~~------pGd~Vlv~~P~y~~~~~~~~~~g~-------------~~v~v~~~~~~~~~~---------- 157 (396)
T PRK09257 107 LRVGADFLKRAF------PDAKVWVSDPTWPNHRAIFEAAGL-------------EVKTYPYYDAATKGL---------- 157 (396)
T ss_pred HHHHHHHHHHhC------CCCeEEECCCCcccHHHHHHHcCC-------------cEEEEeccccccCcc----------
Confidence 999987664221 678999999999988554433222 2233433 112222
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc-cc-cccc-ccCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GK-FFAC-EHAE 261 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~-g~-~~~~-~~~~ 261 (430)
|++++++.+.++..+..++++.. .+|++| ...+.+.+++|.++|++||+++|.||+|.++... +. .... ...+
T Consensus 158 --d~~~l~~~~~~~~~~~~~~i~~~-p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 233 (396)
T PRK09257 158 --DFDAMLADLSQAPAGDVVLLHGC-CHNPTG-ADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAA 233 (396)
T ss_pred --CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHh
Confidence 88999988875434445566566 888998 6678899999999999999999999999988542 11 1111 1111
Q ss_pred CCC---ceeeeecccCC-CccccEEEEE---cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----
Q psy14484 262 IWP---DFLCLSKGITG-GYLPLSLVMT---TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF----- 325 (430)
Q Consensus 262 ~~~---d~~~~sK~l~g-G~~~ig~~~~---~~~~----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~----- 325 (430)
..+ -+-+|||.++. | +|+|++++ +++. ...+.. .......+.+.+.+.++...|+.-
T Consensus 234 ~~~~vi~i~SfSK~~~~~G-lRiG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 306 (396)
T PRK09257 234 AGLELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLSQLKA------TIRTNYSNPPAHGAAIVATILNDPELRAE 306 (396)
T ss_pred cCCcEEEEEEcCCcCcccc-ccceeEEEEeCCHHHHHHHHHHHHH------HhhhhcCCCcHHHHHHHHHHhCCHHHHHH
Confidence 112 23479999985 7 89999873 3333 233322 111223334566666555555311
Q ss_pred -h--hcCHHHHHHHHHHHHHHHHHchhcCC-CeeeEeecceEEEE-EEeecCCccchhHHHHHHHHHHHCCcEEeecCCE
Q psy14484 326 -N--KDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNT 400 (430)
Q Consensus 326 -~--~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~ 400 (430)
. -....+.++++.+.+.+.|++.. .+ .+....++|.|+.| .+. . ..+.+.+.++||.+.|.+
T Consensus 307 ~~~~~~~~r~~~~~rr~~l~~~L~~~~-~~~~~~~~~p~gg~~~w~~l~-~---------~~~~~l~~~~~V~~~p~~-- 373 (396)
T PRK09257 307 WEAELEEMRERIKAMRQLLVEALKAKG-PSRDFDFIARQRGMFSYSGLT-P---------EQVDRLREEFGVYAVGSG-- 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccccceEEEecCCC-H---------HHHHHHHHcCCEEEcCCC--
Confidence 0 12234555666666666666541 11 12333455555444 332 1 234444467799988753
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
||+++ ..++++|++++++|++++
T Consensus 374 -ri~~~-~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 374 -RINVA-GLNESNIDYVAEAIAAVL 396 (396)
T ss_pred -eEEEe-eCCHHHHHHHHHHHHhhC
Confidence 88654 379999999999998753
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=187.55 Aligned_cols=298 Identities=9% Similarity=0.036 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+...++.+.++++++ .+.+.+++||++++..++..+.. +++.|++..+.++... ......+
T Consensus 51 ~~~~~~~e~lA~~~g--~~~~~i~~g~~~a~~~~~~~l~~--------~gd~Vl~~~~~h~s~~-~~~~~~g-------- 111 (370)
T TIGR02539 51 PPIHDFLEDLAEFLG--MDEARVTHGAREGKFAVMHALCK--------EGDWVVLDGLAHYTSY-VAAERAG-------- 111 (370)
T ss_pred hHHHHHHHHHHHHhC--CCceEEECChHHHHHHHHHHhhC--------CCCEEEECCcccHHHH-HHHHHcC--------
Confidence 466788888999984 45778899999999999887764 5567777555543322 2222121
Q ss_pred hccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhC----CCCeEEEEEccccccCCCcccCChHHHHHHHH
Q psy14484 157 TSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230 (430)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~ 230 (430)
.+...++... .+. .|+++|++.+++. ..++.+|+++. +++++|...+ +++|.+
T Consensus 112 ----~~~~~~~~~~~~~~~------------~d~~~l~~~l~~~~~~~~~~~~lv~~~~-p~~~~G~~~~----l~~i~~ 170 (370)
T TIGR02539 112 ----LNVKEVPHTGHPEYK------------VDPEGYGEVIEEVEDESGKPPVLALLTH-VDGEYGNLPD----AGKVAK 170 (370)
T ss_pred ----CEEEEEecCCcccCC------------cCHHHHHHHHHHhhhccCCCcEEEEEEC-CCCCCccccC----HHHHHH
Confidence 2223333221 111 1789999888642 13567788887 8888998877 999999
Q ss_pred HHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccc----
Q psy14484 231 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH---- 304 (430)
Q Consensus 231 l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~---- 304 (430)
+|+++|+++|+||+|+ ++..+. ......+|++ +++|++++| .|+|++++++++++.+... .+++..
T Consensus 171 la~~~~~~livDea~~-~g~~~~----~~~~~~~di~v~s~sK~~~~~-g~~G~l~~~~~~i~~l~~~--~~~~~~~~~~ 242 (370)
T TIGR02539 171 VCREKGVPLLLNCAYT-VGRMPV----SAKEIGADFIVGSGHKSMAAS-GPCGVLGMSEEWEDIVLRK--SRYSPVKEVE 242 (370)
T ss_pred HHHHcCCeEEEECccc-cCCcCC----CHHHcCCCEEEeeCcccccCC-CCEEEEEECHHHHhhhccc--ccCCccceee
Confidence 9999999999999997 432221 1112235654 788999876 4899999999998887651 111111
Q ss_pred --cCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCc---cchh
Q psy14484 305 --SHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE---QIET 378 (430)
Q Consensus 305 --~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~ 378 (430)
+++. ...++.++.++++...+ -....+..++.+++++.|+++ .+..+...+....++.+... .-.. ....
T Consensus 243 ~~~~~~--~~~~~~~~~~al~~~~~~l~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~-~~~~~~~~~~~ 318 (370)
T TIGR02539 243 LLGCTS--RGAPIVTMMASFPHVVERVKRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETP-GFHEIAQKHKR 318 (370)
T ss_pred eecccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECC-chhHHhhhhcc
Confidence 0111 11244455555653211 111222233456788888776 22111111345666666543 2100 0000
Q ss_pred HHHHHHHHHHHCCcE-Eeec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 379 FSKKFFVAALKNELL-LRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 379 ~a~~~~~~l~~~Gv~-~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+..+.+.|+++||. +.+. .+.+|+++. .++++++++++++|++++++
T Consensus 319 ~~~~~~~~L~e~GI~~ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 319 RGYFLYEELKKRGIHGIRSGQTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ccHHHHHHHHhCCCccccCCcceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 135689999999997 6654 358999974 68999999999999998875
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-21 Score=190.36 Aligned_cols=299 Identities=14% Similarity=0.118 Sum_probs=190.6
Q ss_pred CHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 76 HKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++++.+++.+.+..+ .++++|++|+|+++|++.++++++. +++.|++.+|+|.++........+
T Consensus 97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~--------pGD~Vlv~~P~Y~~~~~~~~~~~G--- 165 (496)
T PLN02376 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLAD--------PGDVFLIPSPYYAAFDRDLRWRTG--- 165 (496)
T ss_pred HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCC--------CCCEEEECCCCccchHHHHHhhCC---
Confidence 4566777777776543 5788999999999999999998875 678999999999987543221111
Q ss_pred chhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
...+.++... .++. |++++++++++. ..+++++++.. ++|++| ...+.+.++
T Consensus 166 ---------~~vv~v~~~~~~~~~~------------~~~~le~a~~~a~~~~~~~k~l~l~n-P~NPTG-~~~s~e~l~ 222 (496)
T PLN02376 166 ---------VEIIPVPCSSSDNFKL------------TVDAADWAYKKAQESNKKVKGLILTN-PSNPLG-TMLDKDTLT 222 (496)
T ss_pred ---------CEEEEEeCCCCccCcC------------CHHHHHHHHHHHHhcCCCeeEEEEcC-CCCCCC-ccCCHHHHH
Confidence 1223343321 1121 677777665321 24677666666 788888 667788899
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCccccc-cc-cc---CC---CCCc----eeeeecccC-CCccccEEEEEc-HHHHHh
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EH---AE---IWPD----FLCLSKGIT-GGYLPLSLVMTT-DKIYNS 292 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~-~~---~~---~~~d----~~~~sK~l~-gG~~~ig~~~~~-~~~~~~ 292 (430)
+|.++|++|++++|+||+|..+.+.+..+ .. +. .+ ..++ +.+|||.++ .| +|+|+++.+ +.+.+.
T Consensus 223 ~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG-lRvG~li~~~~~l~~~ 301 (496)
T PLN02376 223 NLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG-FRVGIVYSFNDSVVSC 301 (496)
T ss_pred HHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc-ceEEEEEECCHHHHHH
Confidence 99999999999999999999875444322 11 11 01 1223 237999997 57 899999995 555554
Q ss_pred hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH--------HHHHHHHHHHHHHHHHchhcCCCeeeEee-cceE
Q psy14484 293 IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI--------LQRISQDMKKITKALTSLITHPKIINFRQ-KGMI 363 (430)
Q Consensus 293 ~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~--------~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~ 363 (430)
+.. .......+.+.+.++.+.|+ +..+ .+++++..+.+.+.|++. ++...++ -|++
T Consensus 302 ~~~--------~~~~~~vs~~~Q~a~~~~L~---d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~----gi~~~~~~aG~f 366 (496)
T PLN02376 302 ARK--------MSSFGLVSSQTQLMLASMLS---DDQFVDNFLMESSRRLGIRHKVFTTGIKKA----DIACLTSNAGLF 366 (496)
T ss_pred HHH--------HhhcCCCCHHHHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccCCCceEE
Confidence 433 11222345666666665553 3233 233344444444555432 2222333 3577
Q ss_pred EEEEEeecCCcc--chhHHHHHHHHHHHC-CcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQ--IETFSKKFFVAALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 364 ~~~~~~~~~~~~--~~~~a~~~~~~l~~~-Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+++++. ..... ......++++.+.++ ||.+.|+ .+++|++++. .+++++++++++|++++.
T Consensus 367 lwi~l~-~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~ 437 (496)
T PLN02376 367 AWMDLR-HLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVS 437 (496)
T ss_pred EEEEch-hhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHH
Confidence 777775 32111 111125688887765 9999985 2688987652 568999999999999885
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-21 Score=185.14 Aligned_cols=301 Identities=16% Similarity=0.198 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHhhcCCCCC--eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 76 HKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~--~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
.+..+++++.+++++++..+ .|++++||+++++.++..+.. +++++++..+++++......
T Consensus 34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~--------~~~~vlv~~~~~~~~~~~~~--------- 96 (363)
T TIGR02326 34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP--------KDGKLLVVINGAYGARIVQI--------- 96 (363)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC--------CCCeEEEEeCChhhHHHHHH---------
Confidence 35567788999999986543 699999999999999987754 44566666666666531110
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
.......++.++.+.+... |+++++++++.+ .++.++.+.. +.+++|...| +++|.++|+
T Consensus 97 --a~~~g~~~~~v~~~~~~~~------------d~~~l~~~l~~~-~~~~~v~~~~-~~~~tG~~~~----i~~I~~l~~ 156 (363)
T TIGR02326 97 --AEYLGIPHHVVDTGEVEPP------------DVVEVEAILAAD-PAITHIALVH-CETTTGILNP----IEAVAKLAH 156 (363)
T ss_pred --HHHcCCceEEEeCCCCCCC------------CHHHHHHHHhhC-CCccEEEEEe-ecCCccccCc----HHHHHHHHH
Confidence 0111234455555432222 789999998753 2455666666 7788998888 999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEcHHHHHhhhccCCccccc--------
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-------- 303 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~-------- 303 (430)
++|+++|+|++|+ +|.. .+... .+.+|+++ ++|+++|+ .++|+++++++..+.+... ..++.
T Consensus 157 ~~g~~livD~~~~-~g~~--~~~~~--~~~~D~~~~s~~K~l~~p-~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~ 228 (363)
T TIGR02326 157 RHGKVTIVDAMSS-FGGI--PIDIA--ELHIDYLISSANKCIQGV-PGFGFVIARQAELAACKGN--ARSLSLDLYDQWR 228 (363)
T ss_pred HcCCEEEEEcccc-ccCc--ccchh--hcCccEEEecCccccccC-CcceEEEECHHHHHHhhcC--CCceeecHHHHHH
Confidence 9999999999986 5433 22233 33467664 56998765 4689999999877654320 11100
Q ss_pred ------ccCCCCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecC
Q psy14484 304 ------HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIED 372 (430)
Q Consensus 304 ------~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~ 372 (430)
....|+.+.....+..++++.+..+ +..++++++.+++++.|+++ ....+... ...+.+..+.+. ..
T Consensus 229 ~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~ 306 (363)
T TIGR02326 229 CMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSP-ED 306 (363)
T ss_pred HHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECC-CC
Confidence 0123455666667767777655332 34567788888888888765 22222111 123344555554 32
Q ss_pred CccchhHHHHHHHHHHHCCcEEeec----CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~Gv~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.. .. ...+.+.|.++||.+.++ .+.+|+++...++.+++++++++|++++.
T Consensus 307 ~~-~~--~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~ 361 (363)
T TIGR02326 307 PD-YR--FADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY 361 (363)
T ss_pred CC-CC--HHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 11 11 356889999999999876 36899998778899999999999998764
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=190.13 Aligned_cols=340 Identities=10% Similarity=0.044 Sum_probs=204.2
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc------cccccCCCCCHHHHHHHHHHHhhcC--CCCCeEE--EcCCc
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL------EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCF--YGSDG 103 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~--~~~sg 103 (430)
...+|+..|.... +. .++.+.+++.+++... ..+..+.+..++++.+++++.+..+ ..+++|. .|+|+
T Consensus 29 ~~~i~l~~g~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRD-EN-GKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeEC-CC-CCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence 4668877763211 21 2233445555543221 1122223334566666666644331 3667888 48999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-C-CCCCCCCCCChh
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-P-DSRNINKGNSAN 181 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 181 (430)
++|...++.++.... .+++.|++.+|+|+++.......+. ....++. + +.+..
T Consensus 107 ~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~l~~~~~~~~------- 161 (404)
T PTZ00376 107 TGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNHVNIFKSAGL-------------NVKEYRYYDPKTKGL------- 161 (404)
T ss_pred chHHHHHHHHHHHhc-----CCCCEEEEcCCCchhHHHHHHHcCC-------------ceeeccccCcccCCc-------
Confidence 999998876543221 1568999999999988554443322 2233333 1 11222
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---cccc-
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFAC- 257 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~- 257 (430)
|++.+++.+++..++..++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|.+|...+. ....
T Consensus 162 -----d~~~l~~~~~~~~~~~~~~~~~~-p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~ 234 (404)
T PTZ00376 162 -----DFDGMLEDLRTAPNGSVVLLHAC-AHNPTG-VDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIR 234 (404)
T ss_pred -----CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHH
Confidence 78899988875433456666666 888888 667889999999999999999999999998855331 1011
Q ss_pred ccCCCC---CceeeeecccC-CCccccEEE---EEcHHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHh---
Q psy14484 258 EHAEIW---PDFLCLSKGIT-GGYLPLSLV---MTTDKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFN--- 326 (430)
Q Consensus 258 ~~~~~~---~d~~~~sK~l~-gG~~~ig~~---~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~~~~--- 326 (430)
...... .-+.+|||.++ .| +|+|++ ++++++.+.+.. .... ....++ +.+.+++.++..+|+.-+
T Consensus 235 ~~~~~~~~vi~i~SfSK~~~~~G-lRvG~~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 310 (404)
T PTZ00376 235 LFAERGVEFLVAQSFSKNMGLYG-ERIGALHIVCANKEEAANVLS--QLKL-IIRPMYSSPPIHGARIADRILSDPELRA 310 (404)
T ss_pred HHHhcCCcEEEEEeCCCcccccc-cccceEEEEeCCHHHHHHHHH--HHHH-HHhhhcCCCchHHHHHHHHHhCCHHHHH
Confidence 111111 22347999998 57 899998 467765544321 0000 112233 335677777776664211
Q ss_pred -----hcCHHHHHHHHHHHHHHHHHchhcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeecCC
Q psy14484 327 -----KDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPIGN 399 (430)
Q Consensus 327 -----~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~~~ 399 (430)
.....++++++.+.+.+.|+++ ..+ .+....++|.|+.|... + .+++++|.++ ||.+.|++
T Consensus 311 ~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~p~gg~f~~~~~-~---------~~~~~~L~~~~~v~v~p~~- 378 (404)
T PTZ00376 311 EWLSELKEMSGRIQNMRQLLYDELKAL-GSPGDWEHIINQIGMFSFTGL-T---------KEQVERLIEKYHIYLLDNG- 378 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccccccCceEEEecCC-C---------HHHHHHHHHhCCEeecCCC-
Confidence 0122345566666676777655 222 12233456666554322 1 3578888877 99998874
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
|++++. .+++++++++++|++++.
T Consensus 379 --Ris~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 --RISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred --eEEEec-cCHHhHHHHHHHHHHHHh
Confidence 887643 799999999999998865
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=185.09 Aligned_cols=319 Identities=14% Similarity=0.097 Sum_probs=202.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~v 129 (430)
.++++.+++.+.+.. .......+..+++++.+++.+++.. +.+++++||++|+..++..... +++.|
T Consensus 10 ~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~--------~g~~v 77 (356)
T cd06451 10 VPPRVLKAMNRPMLG----HRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLE--------PGDKV 77 (356)
T ss_pred CCHHHHHHhCCCccC----CCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCC--------CCCEE
Confidence 356777777543321 1111123446789999999998644 3578999999999999987653 55778
Q ss_pred EEEcCCCCCcc-hhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 130 ICLQNSYHGET-LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 130 l~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
++..+++++.. ..... ....++..++.+.... .|++++++.+++ .+++++++.
T Consensus 78 l~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~~~~------------~~~~~l~~~i~~--~~~~~v~i~ 131 (356)
T cd06451 78 LVGVNGVFGDRWADMAE------------RYGADVDVVEKPWGEA------------VSPEEIAEALEQ--HDIKAVTLT 131 (356)
T ss_pred EEecCCchhHHHHHHHH------------HhCCCeEEeecCCCCC------------CCHHHHHHHHhc--cCCCEEEEe
Confidence 88776665521 11111 1122334444332222 278999999873 367778777
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~ 286 (430)
. +++++|.+.+ +++|.++|+++|+++++|++|+ +|.. .+.... ..+|+++ .+|.++++ .++|+++.+
T Consensus 132 ~-~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~--~~~~~~--~~~d~~~~s~~K~l~~p-~g~G~l~~~ 200 (356)
T cd06451 132 H-NETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE--PFRMDE--WGVDVAYTGSQKALGAP-PGLGPIAFS 200 (356)
T ss_pred c-cCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc--cccccc--cCccEEEecCchhccCC-CCcceeEEC
Confidence 7 7888998777 9999999999999999999986 5432 122222 2356665 46998875 468999999
Q ss_pred HHHHHhhhc-cCCcccc---------cc---cCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhc
Q psy14484 287 DKIYNSIYY-KNNINIF---------LH---SHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 287 ~~~~~~~~~-~~~~~~~---------~~---~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~ 350 (430)
+++++.+.. +.....+ .. ....+.++..+.++.++++.+.. +...++.+++.+++.+.|+++ .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g 279 (356)
T cd06451 201 ERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-G 279 (356)
T ss_pred HHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 988776642 0000000 00 11123345555666677766543 345667777888888888765 2
Q ss_pred CCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 351 HPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 351 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
......... .+.+.++.+. ... . ...+++.|.++ ||.+.++ ++++|++++..+|++|+++++++|++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~~~~L~~~~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 280 LKLLAKPELRSPTVTAVLVP-EGV--D---GDEVVRRLMKRYNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred CeeccCcccCCCceEEEECC-CCC--C---HHHHHHHHHHhCCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 222211112 2233333333 211 1 35799999998 9998764 36899999999999999999999988
Q ss_pred HH
Q psy14484 424 TF 425 (430)
Q Consensus 424 ~l 425 (430)
++
T Consensus 354 ~~ 355 (356)
T cd06451 354 AL 355 (356)
T ss_pred Hh
Confidence 75
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=190.47 Aligned_cols=331 Identities=14% Similarity=0.155 Sum_probs=209.0
Q ss_pred CHHHHHHHHHHHhhcc-----ccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 52 NSYINKALKNQLNKLE-----HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
+.++++++.+.+.... .+..+.+..++++.+++++.+.. +.++++|++|+|+++|+..++++++..
T Consensus 142 p~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~------- 214 (534)
T PLN02231 142 SADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRS------- 214 (534)
T ss_pred CHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccC-------
Confidence 3456666566555421 12222344466677777776653 357789999999999999999988641
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhCC---
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKNH--- 199 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~--- 199 (430)
+++.|++..|+|.++.......+. ..+.++... .+.. |+++|++++++..
T Consensus 215 ~gd~Vli~~P~Y~~y~~~~~~~g~-------------~~v~~~l~~~~~~~~------------d~~~Le~~l~~~~~~~ 269 (534)
T PLN02231 215 EKDGILCPIPQYPLYSASIALHGG-------------TLVPYYLDEATGWGL------------EISELKKQLEDARSKG 269 (534)
T ss_pred CCCEEEEeCCCChhHHHHHHHcCC-------------EEEEEecCcccCCCC------------CHHHHHHHHHHHhhcC
Confidence 568899999999988655444332 112222221 1122 7899999887531
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc-cccc-cccc----CCC---CCcee---
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-GKFF-ACEH----AEI---WPDFL--- 267 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~-g~~~-~~~~----~~~---~~d~~--- 267 (430)
.+++++++.. ++|++| .+.+.+.+++|.++|++||++||.||+|..+.+. +..+ .+.. .+. ...++
T Consensus 270 ~~~k~ivl~n-P~NPTG-~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~ 347 (534)
T PLN02231 270 ITVRALVVIN-PGNPTG-QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQ 347 (534)
T ss_pred CCeEEEEEeC-CCCCCC-cCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEe
Confidence 1566665555 678888 6778899999999999999999999999987553 2221 1111 111 12234
Q ss_pred eeecccC--CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-------Hh-----hcCH
Q psy14484 268 CLSKGIT--GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-------FN-----KDNI 330 (430)
Q Consensus 268 ~~sK~l~--gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-------~~-----~~~~ 330 (430)
+|||.+. .| +|+|++.+ ++++.+.+.. . ...+.+.+.+++.++..+++- ++ .+.+
T Consensus 348 S~SK~~~g~pG-lRiGy~~~~~~~~~l~~~l~k------~-~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i 419 (534)
T PLN02231 348 SVSKGYYGECG-KRGGYMEVTGFTSDVREQIYK------V-ASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGI 419 (534)
T ss_pred ccCcccccCCc-cceEEEEEecCCHHHHHHHHH------H-HhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHH
Confidence 6899874 36 89999986 6788887765 1 222334455666666555521 10 1123
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEee-cCCccch-----hHHHHHHHHHH-HCCcEEeecC----
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVII-EDPEQIE-----TFSKKFFVAAL-KNELLLRPIG---- 398 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~~-----~~a~~~~~~l~-~~Gv~~~~~~---- 398 (430)
.+.++++.+.+.+.|+++ +++...+++|.|+.| .+.. ....... .....++..|+ +.||.+.|+.
T Consensus 420 ~~~~~~r~~~l~~~L~~~---~gi~~~~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~ 496 (534)
T PLN02231 420 LSSLARRAKTLEDALNSL---EGVTCNKAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQ 496 (534)
T ss_pred HHHHHHHHHHHHHHHhcC---CCceecCCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCC
Confidence 455666777777777654 455556677888777 2210 1000000 00124666666 5699999852
Q ss_pred ----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 399 ----NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 399 ----~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
..+|++ +..+++++++++++|.+++.+.+
T Consensus 497 ~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~~~~ 529 (534)
T PLN02231 497 VPGTWHFRCT--ILPQEDKIPAIVSRLTEFHKSFM 529 (534)
T ss_pred CCCCCeEEEE--eCCCHHHHHHHHHHHHHHHHHHH
Confidence 247775 45789999999999999988764
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-21 Score=184.17 Aligned_cols=333 Identities=9% Similarity=0.017 Sum_probs=205.0
Q ss_pred cccCCCCCHHHHHHHHHHHhhcccc-----ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhh
Q psy14484 45 VNLFGHSNSYINKALKNQLNKLEHV-----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 45 ~~~lG~~~p~v~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~ 119 (430)
..-+|.-++++++|+.+........ .......+...++++.++++++ .+.+++++|+++|+..+++.+..
T Consensus 26 ~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--~~~~~~~~g~t~a~~~al~~l~~--- 100 (387)
T PRK09331 26 IQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--MDEARVTHGAREGKFAVMHSLCK--- 100 (387)
T ss_pred hhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhcC---
Confidence 4557778899999999987432211 0111224567899999999995 46788999999999999988754
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
++++|++...++.+. ....... ......++. +..+. .|++++++.+++
T Consensus 101 -----~gd~Vlv~~~~h~s~-~~~~~~~------------G~~~~~v~~~~~~~~~------------~d~~~l~~~l~~ 150 (387)
T PRK09331 101 -----KGDYVVLDGLAHYTS-YVAAERA------------GLNVREVPKTGYPEYK------------ITPEAYAEKIEE 150 (387)
T ss_pred -----CCCEEEECCCchHHH-HHHHHHc------------CCEEEEEeCccCcCCC------------cCHHHHHHHHHH
Confidence 566777755443322 2212111 123344443 11111 278999998875
Q ss_pred C----CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeeccc
Q psy14484 198 N----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGI 273 (430)
Q Consensus 198 ~----~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l 273 (430)
+ .+++++|+++. +++++|...+ +++|.++|+++|+++|+|++|+ +|..+ +....++....+.+++|++
T Consensus 151 ~~~~~~~~~~lV~l~~-~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~--~~~~~~g~D~~~~s~~K~l 222 (387)
T PRK09331 151 VKEETGKPPALALLTH-VDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMP--VDGKKLGADFIVGSGHKSM 222 (387)
T ss_pred hhhccCCCCEEEEEEC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcC--CCHHHcCCCEEEeeCcccc
Confidence 3 23688888888 8899998888 9999999999999999999997 43221 1222334333344677999
Q ss_pred CCCccccEEEEEcHHHHHhhhccCCccccc------ccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Q psy14484 274 TGGYLPLSLVMTTDKIYNSIYYKNNINIFL------HSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALT 346 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~------~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~ 346 (430)
+++ .++|++++++++++.+... .+++. .+++. .+....++.++++.+.+ ....++..++.+++++.|+
T Consensus 223 ~~~-~~~G~l~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~ 297 (387)
T PRK09331 223 AAS-APSGVLATTEEYADKVFRT--SRKFGVKEVELLGCTL--RGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELE 297 (387)
T ss_pred cCC-CCEEEEEECHHHHhhcccc--cCCCcccceeeeceec--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 876 5899999999988776541 11111 11222 22233334445543322 2234445667778888887
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCC---ccchhHHHHHHHHHHHCCcEEee-cCC-EEEEeCCCCCCHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDP---EQIETFSKKFFVAALKNELLLRP-IGN-TVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~a~~~~~~l~~~Gv~~~~-~~~-~lR~~~~~~~t~e~i~~~~~~l 421 (430)
++..+..+..-.....++.++.. .-. ......+..+.+.|.++||...+ +.. .+|+. +..++++++++++++|
T Consensus 298 ~l~g~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~i~ri~-~~g~t~~di~~l~~aL 375 (387)
T PRK09331 298 KIEGFKQLGEKPRNHDLMKFETP-SFDEIAKKHKRRGFFLYEELKKRGIHGIKPGATKEFKLS-TYGLTWEQVEYVADAF 375 (387)
T ss_pred cCCCEEEeccCcCcCCeEEEeCC-chhHHhhhccccchhHHHHHHHcCceEEccCCceEEEEE-eccCCHHHHHHHHHHH
Confidence 66322222110123344444322 100 00000125689999999998543 333 45554 5568999999999999
Q ss_pred HHHHHH
Q psy14484 422 FQTFNE 427 (430)
Q Consensus 422 ~~~l~~ 427 (430)
++++.+
T Consensus 376 ~~i~~~ 381 (387)
T PRK09331 376 KEIAEK 381 (387)
T ss_pred HHHHHh
Confidence 998765
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=187.65 Aligned_cols=288 Identities=9% Similarity=0.087 Sum_probs=189.9
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhh
Q psy14484 78 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 157 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~ 157 (430)
...++++.+++.++.++++|++++|+++++..+++++.. ++++.|++.+|+|..+...... .
T Consensus 60 ~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~-------~g~~~vlv~~p~y~~~~~~~~~-~---------- 121 (364)
T PRK04781 60 QPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCV-------PGRDAVLVTPPVFGMYAVCARL-Q---------- 121 (364)
T ss_pred CHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcC-------CCCCeEEEcCCChHHHHHHHHH-c----------
Confidence 356888888888888888999999999999999987764 1447788888887544322111 1
Q ss_pred ccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 158 SLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
..+...++..+. .... .|++++++.+. ..+++++++.. ++|++|.+. +.+.++++.+.|+ ++
T Consensus 122 --g~~~~~v~~~~~~~~~~----------~d~~~l~~~~~--~~~~~lv~l~~-p~NPTG~~~-~~~~~~~l~~~~~-~~ 184 (364)
T PRK04781 122 --NAPLVEVPLVDGADGFH----------ADVPAIVAAAL--ASNAKLVFLCS-PSNPAGSAI-ALDQIERALQALQ-GK 184 (364)
T ss_pred --CCEEEEEecCCCccCCC----------cCHHHHHHHHh--ccCCeEEEEcC-CCCCCCCCc-CHHHHHHHHHhCC-CC
Confidence 122334443211 0100 16677655543 24567777777 889999555 5666777777775 47
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCc---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCH
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPD---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 312 (430)
+++|+||+|..|...... ....+..++ +-+|||.++ .| +|+|++++++++++.+.. ....++.+.
T Consensus 185 ~~iI~Deay~~f~~~~~~--~~~~~~~~~vi~~~SfSK~~gl~G-lRvGy~v~~~~l~~~l~~--------~~~~~~~~~ 253 (364)
T PRK04781 185 ALVVVDEAYGEFSDVPSA--VGLLARYDNLAVLRTLSKAHALAA-ARIGSLIANAELIAVLRR--------CQAPYPVPT 253 (364)
T ss_pred cEEEEeCcchhhcCCcch--HHHHhhCCCEEEEecChhhccccc-ceeeeeeCCHHHHHHHHh--------ccCCCCCCH
Confidence 999999999987532221 111122233 337999998 57 899999999999988876 334566677
Q ss_pred HHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHH
Q psy14484 313 LACCAALATLEIFN---KDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL 388 (430)
Q Consensus 313 ~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~ 388 (430)
+++.++..+|+.-. ..+..+.+++..+++.+.|+.+ +.+. ..+..|+++++.+. + ..++.+.|.
T Consensus 254 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~---~~~~~~~p~~g~f~~~~~~-~--------~~~~~~~l~ 321 (364)
T PRK04781 254 PCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQL---PGVRRVYPSQGNFLLVRFD-D--------AEAAFQALL 321 (364)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCeECCCCCcEEEEEcC-C--------HHHHHHHHH
Confidence 77777766664210 1122334455556666666554 3322 34566888877665 3 256888899
Q ss_pred HCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 389 KNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 389 ~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
++||.+.++ ++++||++. ++++.++++++|++...
T Consensus 322 ~~gI~v~~~~~~~~~~~~~Ris~~---~~~~~~~l~~al~~~~~ 362 (364)
T PRK04781 322 AAGVVVRDQRAAPRLSDALRITLG---TPEQNDRVLAALQRTQA 362 (364)
T ss_pred HCCeEEeeCCCCCCCCCeEEEeCC---CHHHHHHHHHHHHHHHh
Confidence 999999885 268999866 78999999999987643
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=171.66 Aligned_cols=322 Identities=17% Similarity=0.173 Sum_probs=227.9
Q ss_pred ccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhh
Q psy14484 46 NLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 46 ~~lG~-~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~ 120 (430)
.+||. .||+|.+|+++.+++++.. -+-.+.+....+|++.|+++. ..+..++++|..-||+..+-.+...
T Consensus 180 DYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LH--qK~aALlFsSCfVANDstLftLak~--- 254 (570)
T KOG1360|consen 180 DYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLH--QKEAALLFSSCFVANDSTLFTLAKK--- 254 (570)
T ss_pred ccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHh--cCcceeeeeeeeeccchHHHHHHHH---
Confidence 45666 4999999999999986533 112344567789999999998 5667788899999999988765543
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH- 199 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~- 199 (430)
=.+-+|.-+.+.|.+.+..+..++.+- .. +.+ ||++.|++.++..+
T Consensus 255 ----lpgcei~SD~gNHASMI~GIrns~v~K------------~I--FrH---------------ND~~hL~~lL~~~~~ 301 (570)
T KOG1360|consen 255 ----LPGCEIFSDEGNHASMIQGIRNSRVPK------------HI--FRH---------------NDLDHLEQLLQSSPK 301 (570)
T ss_pred ----CCCcEEeccccchHHHHHHhhhcCCcc------------ee--ecc---------------CCHHHHHHHHHhCCC
Confidence 234566667788887666555444221 11 222 49999999998874
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc--cccCCC--CCcee--eeeccc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA--CEHAEI--WPDFL--CLSKGI 273 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~--~~~~~~--~~d~~--~~sK~l 273 (430)
..++.|.+|+ |+++.|.+.| |++|.+++++||++..+|||++ .|-.|..++ -+..|+ +.||+ |++|++
T Consensus 302 svPKivAFEt-VhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf 375 (570)
T KOG1360|consen 302 SVPKIVAFET-VHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERDGVMHKVDIISGTLGKAF 375 (570)
T ss_pred CCCceEEEee-eeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccCCcchhhhhcccchhhhc
Confidence 4678889999 9999999999 9999999999999999999998 555565332 244454 46887 699999
Q ss_pred CCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHchhc
Q psy14484 274 TGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~l~~ 350 (430)
|.= -|++..+..+++.++.. ...| ..|.+-.|..++.|+++.++++.+ .++..-+++..++++.|.++ +
T Consensus 376 GcV---GGYIAat~~LvDmiRSy--AaGF--IFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-G 447 (570)
T KOG1360|consen 376 GCV---GGYIAATRKLVDMIRSY--AAGF--IFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-G 447 (570)
T ss_pred ccc---cceehhhhhHHHHHHHh--cCce--EEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-C
Confidence 861 15688999999888762 1122 234455677788888888888653 23344456677777777766 4
Q ss_pred CCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEee--------cCCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 351 HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRP--------IGNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 351 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~--------~~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+|.+.. -..++-+... ....+.+.+..|+. +||++.. +...+|+.|...+|++-++.+++.|
T Consensus 448 iPVi~~---pSHIiPv~vg------da~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l 518 (570)
T KOG1360|consen 448 IPVIPN---PSHIIPVRVG------DAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNAL 518 (570)
T ss_pred CcccCC---Ccceeeeecc------CHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHH
Confidence 454322 1223333333 23335677887764 4998864 2368999999999999999999999
Q ss_pred HHHHHHh
Q psy14484 422 FQTFNEV 428 (430)
Q Consensus 422 ~~~l~~~ 428 (430)
..+.+++
T Consensus 519 ~~vw~~v 525 (570)
T KOG1360|consen 519 LDVWNEV 525 (570)
T ss_pred HHHHHHc
Confidence 8887654
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=183.98 Aligned_cols=330 Identities=11% Similarity=0.059 Sum_probs=205.1
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~ 108 (430)
..|+|..+ .|..++.+++++.+.+..........+ ..+..+++++.+++.++...+++++++|+++++.
T Consensus 18 ~~yl~~~~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~ 91 (397)
T TIGR01976 18 RVFFDNPA------GTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTF 91 (397)
T ss_pred eEEecCCc------cCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHH
Confidence 47888544 334678999999998865321111111 1244678999999999877678999999999998
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCA 187 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 187 (430)
.++.+..... .++++|++.++.|++........ ......+...++.+. .... |
T Consensus 92 ~~~~~~~~~~-----~~gd~vl~~~~~~~s~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~------------~ 145 (397)
T TIGR01976 92 LLSRAISRRW-----GPGDEVIVTRLDHEANISPWLQA---------AERAGAKVKWARVDEATGEL------------H 145 (397)
T ss_pred HHHHHHHhcC-----CCCCEEEEcCCchHhHHHHHHHH---------HHhcCCEEEEEeccccCCCc------------C
Confidence 7776653210 14567888777765542111010 000112233444332 1111 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
++++++.++ +++++++++. +++++|.+.+ +++|.++|+++|+++|+||+|. .+. . .. +.....+|++
T Consensus 146 ~~~l~~~i~---~~~~lv~i~~-~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~-~~--~~~~~~~d~~ 212 (397)
T TIGR01976 146 PDDLASLLS---PRTRLVAVTA-ASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G-LI--DVQATGADFL 212 (397)
T ss_pred HHHHHHhcC---CCceEEEEeC-CCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c-CC--CHHHcCCCEE
Confidence 888988885 4678888888 8899998887 9999999999999999999985 321 1 11 2222346776
Q ss_pred e--eecccCCCccccEEEEEcHHHHHhhhccCC-------cccccccCCCCCCHHHHHHHHHHHHHHhhcC---------
Q psy14484 268 C--LSKGITGGYLPLSLVMTTDKIYNSIYYKNN-------INIFLHSHSYSGNPLACCAALATLEIFNKDN--------- 329 (430)
Q Consensus 268 ~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~-------~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~--------- 329 (430)
+ ++|.++ .++|++++++++++.+.+... ...+ ..+ +.+...+++..++++.+.+.+
T Consensus 213 ~~s~~K~~g---~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~-~~g--t~~~~~~~~l~~al~~~~~~g~~~~~~~~~ 286 (397)
T TIGR01976 213 TCSAYKFFG---PHMGILWGRPELLMNLPPYKLTFSYDTGPERF-ELG--TPQYELLAGVVAAVDYLAGLGESANGSRRE 286 (397)
T ss_pred EEechhhcC---CceEEEEEcHHHHhhCCCccccCccCCCcchh-cCC--CCCHHHHHHHHHHHHHHHHhCcccccchhh
Confidence 4 568763 479999999998776654100 0011 111 223344444555565543221
Q ss_pred --------HHHHHHHHHHHHHHHHHchhcCCCeee--EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--
Q psy14484 330 --------ILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 330 --------~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
..++..++.+++++.|+++.....+.. ....+.++.+... .. . +..+.++|.++||.+..+
T Consensus 287 ~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~l~~~L~~~gI~v~~~~~ 359 (397)
T TIGR01976 287 RLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVH-GL---P---PQRVVRRLADQGIDAWAGHF 359 (397)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeC-Cc---C---HHHHHHHHHHCCeEEEeCcc
Confidence 234445566777777765421111111 1124455555444 21 1 357899999999999754
Q ss_pred --------------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 398 --------------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 398 --------------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
++++|++++..+|++|++++++.|
T Consensus 360 ~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 360 YAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred chHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 257999999999999999999864
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=183.62 Aligned_cols=339 Identities=15% Similarity=0.144 Sum_probs=204.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CC-----CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SN-----LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+..|+|.. .+|..++.+.+++.+.+........ .. ......+++ +.+ +++++.+++|+|++|+|++
T Consensus 27 ~~iyld~~------a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~g~~~~~v~~~~~~t~~ 98 (406)
T TIGR01814 27 AVIYLDGN------SLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESL-LKL-RLVGAKEDEVVVMNTLTIN 98 (406)
T ss_pred CcEEecCC------CcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhh-ccc-cccCCCCCcEEEeCCchHH
Confidence 34666632 2454578888999887765432211 01 112233333 335 7888888899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCe----eEeCCCCCCCCCCCCChhH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKT----YIITTPDSRNINKGNSANE 182 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 182 (430)
++.+++.+... + .+++.|++.+..| .+........ ......++ ..++.+.....
T Consensus 99 l~~~~~~~~~~----~-~~~~~i~~~~~~~-~s~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~g~~-------- 156 (406)
T TIGR01814 99 LHLLLASFYKP----T-PKRYKILLEAKAF-PSDHYAIESQ--------LQLHGLTVEESMVQIEPREEETL-------- 156 (406)
T ss_pred HHHHHHHhcCC----c-CCccEEEecCCCC-ChHHHHHHHH--------HHhcCCCcccceEEeccCCCCcc--------
Confidence 99988875321 0 0123455444444 4321111100 00001111 12222211111
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
+++++++.++..++++++|+++. +++++|.+.| +++|.++|+++|+++++|++|+ +|.. .+.+.. .
T Consensus 157 ----~~~~l~~~~~~~~~~t~lv~~~~-v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~~--~ 222 (406)
T TIGR01814 157 ----RLEDILDTIEKNGDDIAVILLSG-VQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLHD--W 222 (406)
T ss_pred ----CHHHHHHHHHhcCCCeEEEEEec-cccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--cccccc--C
Confidence 67788888865556899999999 9999999998 9999999999999999999998 5433 223333 3
Q ss_pred CCceeeee--cccCCCccccEEEEEcHHHHHhhhcc--C---Cccc--ccccC----------CCCCCHHHHHHHHHHHH
Q psy14484 263 WPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--N---NINI--FLHSH----------SYSGNPLACCAALATLE 323 (430)
Q Consensus 263 ~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~---~~~~--~~~~~----------t~~~~~~~~~aa~~~l~ 323 (430)
.+|++++| |.|.||. . |++++.++....+.+. + .... +.... .-+.+..++++..++|+
T Consensus 223 gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~ 300 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGP-G-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLD 300 (406)
T ss_pred CCCEEEEcCccccCCCC-C-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHH
Confidence 46777655 9887762 4 5566655433223220 0 0000 00000 11245567777777888
Q ss_pred HHhh---cCHHHHHHHHHHHHHHHHHchhc-CCCee-----eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEE
Q psy14484 324 IFNK---DNILQRISQDMKKITKALTSLIT-HPKII-----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 394 (430)
Q Consensus 324 ~~~~---~~~~~~~~~~~~~l~~~l~~l~~-~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~ 394 (430)
++++ +...++.+++.+++++.|+++.. .+.+. ....++.++.+.+. .+ ...+.+.|.++||.+
T Consensus 301 ~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~-------~~~~~~~L~~~gi~v 372 (406)
T TIGR01814 301 IFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VP-------GKAVFQALIKRGVIG 372 (406)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CC-------HHHHHHHHHHCCEEE
Confidence 7754 44567778888888888766411 12221 11123445555443 11 357888999999988
Q ss_pred eecC-CEEEEeC-CCCCCHHHHHHHHHHHHHHH
Q psy14484 395 RPIG-NTVYLMP-PYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 395 ~~~~-~~lR~~~-~~~~t~e~i~~~~~~l~~~l 425 (430)
...+ +.+|+++ ++.+|++||++++++|++++
T Consensus 373 ~~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 373 DKREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred eccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 7654 7899999 68999999999999998765
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.3e-21 Score=181.17 Aligned_cols=310 Identities=10% Similarity=0.091 Sum_probs=196.8
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCC-HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
+..++||..| .++++ .++.+++++.+.+..... |+. ....++++.+++.++.++++|++|+|+++++..++
T Consensus 21 ~~~~~~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~-----Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~ 92 (349)
T PRK07908 21 GPGLLDFAVN--VRHDT-PPEWLRERLAARLGDLAA-----YPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLA 92 (349)
T ss_pred CCCeEEecCC--CCCCC-CCHHHHHHHHHHhhHhhc-----CCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHH
Confidence 5689999887 45555 578899999988755321 222 34557778888888888899999999999999887
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+ + . + +.+++..|+|..+...... .+ .+...++.+..+.. |+++
T Consensus 93 ~-l-~--------~-~~viv~~P~y~~~~~~~~~-~G------------~~i~~v~~~~~~~~------------d~~~- 135 (349)
T PRK07908 93 R-L-R--------P-RRAAVVHPSFTEPEAALRA-AG------------IPVHRVVLDPPFRL------------DPAA- 135 (349)
T ss_pred h-c-C--------C-CeEEEeCCCChHHHHHHHH-cC------------CEEEeeccCcccCc------------ChhH-
Confidence 7 2 2 3 4566778998766432222 11 12223333221111 4443
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee---e
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL---C 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~ 268 (430)
+. .+++++++.. ++|++|...+ .++|.++|++ ++++|+||+|..+. .+.......... ++++ +
T Consensus 136 ---l~---~~~~~i~l~n-p~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~~~~~l~~~~~-~~~i~i~S 201 (349)
T PRK07908 136 ---VP---DDADLVVIGN-PTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PGEPESLAGDDL-PGVLVLRS 201 (349)
T ss_pred ---hc---cCCCEEEEcC-CCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cCCccccccccC-CCEEEEee
Confidence 22 3456666655 7889997776 5577778865 78899999998762 232211111111 2333 6
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH--Hh-hcCHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI--FN-KDNILQRISQDMKKITKA 344 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~--~~-~~~~~~~~~~~~~~l~~~ 344 (430)
|||.++ .| +|+|++++++++++.+.. ....+..+++...++.+.++. .+ -+...++++++.+++.+.
T Consensus 202 ~SK~~~l~G-lRiG~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 272 (349)
T PRK07908 202 LTKTWSLAG-LRVGYALGAPDVLARLTR--------GRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAG 272 (349)
T ss_pred cccccCCcc-ceeeeeecCHHHHHHHHh--------cCCCCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 899987 57 899999999999888765 112244455555444333320 00 122344555566666666
Q ss_pred HHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHH
Q psy14484 345 LTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQH 416 (430)
Q Consensus 345 l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~ 416 (430)
|+++ . +... +..|.++++.+. + ...+.+.|.++||.+.++ .+++|++++ +++++++
T Consensus 273 L~~~---~-~~~~~p~~g~~~~~~~~-~--------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~---~~~~~~~ 336 (349)
T PRK07908 273 LRAV---G-ARVVDPAAAPFVLVRVP-D--------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR---PRAEVPV 336 (349)
T ss_pred HHhC---C-cEeccCCCceEEEEECC-c--------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC---CCccHHH
Confidence 6543 2 2222 245777777665 3 256888899999999874 268999874 8889999
Q ss_pred HHHHHHHHHH
Q psy14484 417 MTSAIFQTFN 426 (430)
Q Consensus 417 ~~~~l~~~l~ 426 (430)
++++|++++.
T Consensus 337 l~~al~~~~~ 346 (349)
T PRK07908 337 LVQALAEILK 346 (349)
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-21 Score=184.57 Aligned_cols=303 Identities=16% Similarity=0.114 Sum_probs=202.9
Q ss_pred CHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 76 HKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
.+..+++++.++++++.+. +.+++++||+++++.++..... ++++|++.+++|++.....
T Consensus 41 ~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~~--------~Gd~Vlv~~~~~~~~~~~~----------- 101 (401)
T PLN02409 41 PALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTLS--------PGDKVVSFRIGQFSLLWID----------- 101 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcCC--------CCCEEEEeCCCchhHHHHH-----------
Confidence 3567788888999987654 4689999999999998876643 6678998887776542111
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHH--
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI-- 231 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l-- 231 (430)
.......+...++.+..... |++++++.+++.+ +++++|++.. +.+++|.+.| +++|.++
T Consensus 102 ~~~~~g~~v~~v~~~~~~~~------------~~~~l~~~l~~~~~~~~k~v~~~~-~~~~tG~~~~----~~~i~~l~~ 164 (401)
T PLN02409 102 QMQRLNFDVDVVESPWGQGA------------DLDILKSKLRQDTNHKIKAVCVVH-NETSTGVTND----LAGVRKLLD 164 (401)
T ss_pred HHHHcCCceEEEECCCCCCC------------CHHHHHHHHhhCcCCCccEEEEEe-ecccccccCC----HHHHHHHHh
Confidence 01112234445554422111 7889999997521 3688888888 8888998887 8888888
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEcHHHHHhhhccCCccccc------
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL------ 303 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~------ 303 (430)
|+++|+++|+|++|+ ++.. .++...+..|+++ .+|++++. .++|+++.++++++.+... ...+..
T Consensus 165 ~~~~g~~~vvD~v~s-~g~~----~id~~~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 237 (401)
T PLN02409 165 CAQHPALLLVDGVSS-IGAL----DFRMDEWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTA-KSPRVFFDWADY 237 (401)
T ss_pred hhccCcEEEEEcccc-cCCc----cccccccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcC-CCCCeecCHHHH
Confidence 999999999999987 5321 1222233457765 45999875 4699999999987776531 001100
Q ss_pred ----ccC---CCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeee--EeecceEEEEEEeec
Q psy14484 304 ----HSH---SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVIIE 371 (430)
Q Consensus 304 ----~~~---t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~g~~~~~~~~~~ 371 (430)
..+ .++++...+.+..++++.+.+ ++..++.+++.+++++.|+++ ....+.. ....+.+.++.++ .
T Consensus 238 ~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p-~ 315 (401)
T PLN02409 238 LKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVP-E 315 (401)
T ss_pred HHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCC-C
Confidence 111 234555667777788886643 455677888888888888765 2222221 1112344455544 3
Q ss_pred CCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 372 DPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.. +.++.+.|. +.|+.+..+ +..+|++.+..++++++..++++|++++.++
T Consensus 316 ~~~-----~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 316 GID-----SAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred CCC-----HHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 211 246776664 569998854 5789999999999999999999999998763
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=184.20 Aligned_cols=320 Identities=15% Similarity=0.138 Sum_probs=197.2
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 115 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~ 115 (430)
.+||.++. ++. .+|.+++++.+...... .+++.+...+|++.+++.+ +.+.+++++||++++..++.+.+
T Consensus 1 ~~~~~~~~--~~~--p~~~~~~a~~~~~~~~~----~Y~~~~~~~~L~~~la~~~--g~~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDT--VTR--PSRAMLEAMMAAPVGDD----VYGDDPTVNALQDYAAELS--GKEAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred Cccccccc--CCC--CCHHHHHHHHhccCCCc----ccCCCHHHHHHHHHHHHHh--CCCeEEEeCchHHHHHHHHHHhc
Confidence 37888883 333 78999999877543321 1336788899999999998 45566899999999988887654
Q ss_pred HhhhhcCCCCCcEEEEEcCCCCC-cchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 116 HYWYNKGFLNKKKFICLQNSYHG-ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 116 ~~~~~~g~~~~~~vl~~~~~yhg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
. +++.|++..++|.. +........+ ......++...++.. |+++|+++
T Consensus 71 ~--------~gd~vi~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------------d~~~l~~~ 119 (333)
T PRK10534 71 E--------RGEEYIVGQAAHNYLYEAGGAAVLG-----------SIQPQPIDAAADGTL------------PLDKVAAK 119 (333)
T ss_pred C--------CCCeeEEechhhhhHhcCCchHHhc-----------CceEEeecCCCCCCC------------CHHHHHHh
Confidence 3 45667766555531 1110000000 011122322222222 78999888
Q ss_pred HHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc---ccccccccCCCCCc--e
Q psy14484 195 LKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT---GKFFACEHAEIWPD--F 266 (430)
Q Consensus 195 l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~---g~~~~~~~~~~~~d--~ 266 (430)
+.++. .++++|+++. ++ +| ...+.+.+++|.++|++|++++++||+|. |+.. +... ......+| +
T Consensus 120 i~~~~~~~~~~~lv~l~n-p~--~G-~v~~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~~~--~~~~~~~~~~~ 192 (333)
T PRK10534 120 IKPDDIHFARTRLLSLEN-TH--NG-KVLPREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGCEL--KEITQYCDSFT 192 (333)
T ss_pred hcccCcCcccceEEEEec-CC--CC-eecCHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCCCH--HHHHhcCCEEE
Confidence 85310 1355555543 33 36 44567778999999999999999999976 4211 1111 00011123 4
Q ss_pred eeeecccCCCccccE-EEEEcHHHHHhhhccCCcccccccC--CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy14484 267 LCLSKGITGGYLPLS-LVMTTDKIYNSIYYKNNINIFLHSH--SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 343 (430)
Q Consensus 267 ~~~sK~l~gG~~~ig-~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~ 343 (430)
++|||+++ .++| ++++++++++.+.. +.... .+..+.++++++.++|+.. ....++..+.++++.+
T Consensus 193 ~s~SK~~~---~~~G~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~ 261 (333)
T PRK10534 193 ICLSKGLG---TPVGSLLVGNRDYIKRARR------WRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAE 261 (333)
T ss_pred EEeEcCCC---CcccceEEcCHHHHHHHHH------HHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH
Confidence 58999776 3578 57789999887764 11111 1222334555566666421 2333444445667778
Q ss_pred HHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 344 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.|+++ ... ..++.+.|+.+.+. +. . +.++.+.|+++||.+.++. .+|+..+..+|++++++++++|++
T Consensus 262 ~L~~~-g~~---~~~~~~nfv~~~~~-~~----~--~~~~~~~l~~~gi~v~~~~-~~rl~~~~r~t~e~~~~~~~~l~~ 329 (333)
T PRK10534 262 QLREA-GAD---VMRQDTNMLFVRVG-EE----Q--AAALGEYMRERNVLINASP-IVRLVTHLDVSREQLAEVVAHWRA 329 (333)
T ss_pred HHHhC-CCc---cCCCCceEEEEECC-ch----h--HHHHHHHHHHcCeeecCCc-eEEEEEEeCCCHHHHHHHHHHHHH
Confidence 77765 222 22346777776654 21 1 3578889999999998764 578887777899999999999987
Q ss_pred HHH
Q psy14484 424 TFN 426 (430)
Q Consensus 424 ~l~ 426 (430)
.+.
T Consensus 330 ~~~ 332 (333)
T PRK10534 330 FLA 332 (333)
T ss_pred Hhc
Confidence 654
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=168.55 Aligned_cols=318 Identities=16% Similarity=0.153 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 53 SYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 53 p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
++..+|+.+++..+. .+.+..+....+++.++.+.+.++ ...+.|++|+|.++|++.++..+.. ++..
T Consensus 81 ~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~--------p~aN 152 (447)
T KOG0259|consen 81 QEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLAN--------PGAN 152 (447)
T ss_pred HHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcC--------CCCc
Confidence 478889988887542 222233444666788888777665 3567999999999999999998765 7788
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC-CCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT-TPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 206 (430)
|+.+.|+|.-+...+....- +++... .|+ +++. |++.+|.++++ ++++.++
T Consensus 153 ILlPrPGfp~Y~~~a~~~~l-------------EVR~ydlLPe~~weI------------DL~~veal~DE--NT~Aivv 205 (447)
T KOG0259|consen 153 ILLPRPGFPLYDTRAIYSGL-------------EVRYYDLLPEKDWEI------------DLDGVEALADE--NTVAIVV 205 (447)
T ss_pred eecCCCCCchHHHhhhhcCc-------------eeEeecccCccccee------------chHHHHHhhcc--CeeEEEE
Confidence 99999999876443332111 111111 222 1222 99999999973 3455555
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cc-cCCCCCcee--eeeccc-CCCccccE
Q psy14484 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CE-HAEIWPDFL--CLSKGI-TGGYLPLS 281 (430)
Q Consensus 207 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~-~~~~~~d~~--~~sK~l-~gG~~~ig 281 (430)
++| +|+-| .+++.+-|++|.++|+++|+++|.||||..+.+-+..|. .. ...+.|-+. .+||.. -.| ||+|
T Consensus 206 iNP--~NPcG-nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPG-WRlG 281 (447)
T KOG0259|consen 206 INP--NNPCG-NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPG-WRLG 281 (447)
T ss_pred eCC--CCCCc-ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCC-ceee
Confidence 565 44444 678899999999999999999999999987755555432 22 233456544 467864 447 8999
Q ss_pred EEEEcHH--------HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHHHHchh
Q psy14484 282 LVMTTDK--------IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKALTSLI 349 (430)
Q Consensus 282 ~~~~~~~--------~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~----~~~~~~~~~l~~~l~~l~ 349 (430)
|++.... ..+.+.. + ..-+.+++.+.++|.-..|+.- .+++. .-++.+.+.-.++|+++
T Consensus 282 Wi~~hD~~gvf~~~~~~q~~~~------~-~~~~~~p~TiiQ~AlP~IL~kT-p~efF~k~~~~lk~na~l~y~~Lk~I- 352 (447)
T KOG0259|consen 282 WIALHDPRGVFRDTKVVQGIKN------F-LDIIPGPATIIQGALPDILEKT-PEEFFDKKLSFLKSNADLCYSRLKDI- 352 (447)
T ss_pred eEEEecccccccchHHHHHHHH------H-HhccCCccHhHHHHhHHHHHhC-hHHHHHHHHHHHHhhHHHHHHHHhcC-
Confidence 9987542 2223322 1 1223344555555554555421 13343 33466666667777765
Q ss_pred cCCCee-eEeecceEEEEEEeec-----CCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHHHHHH
Q psy14484 350 THPKII-NFRQKGMIWAFDVIIE-----DPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 350 ~~~~~~-~~~~~g~~~~~~~~~~-----~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~ 417 (430)
|++. .++++|.++.+.-. + +...+ ..|++.|. |+.+++-|+ .+++|++ .+...+.++++
T Consensus 353 --P~l~cp~kPeg~mylmv~l-~~s~~~~~~dD----~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea 423 (447)
T KOG0259|consen 353 --PCLTCPVKPEGCMYLMVKL-NLSLFPDIEDD----VDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEA 423 (447)
T ss_pred --CCcccCcCCCcceEEEecc-chhhhcccccc----HHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHH
Confidence 6655 66788888766432 1 11111 45777764 668888886 4899994 55788889999
Q ss_pred HHHHHHHHHH
Q psy14484 418 TSAIFQTFNE 427 (430)
Q Consensus 418 ~~~l~~~l~~ 427 (430)
.+||++...+
T Consensus 424 ~~Rik~Fc~R 433 (447)
T KOG0259|consen 424 FSRIKEFCDR 433 (447)
T ss_pred HHHHHHHHHh
Confidence 9999987653
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-20 Score=180.12 Aligned_cols=335 Identities=13% Similarity=0.078 Sum_probs=202.8
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccc--cCCCCCHHHHHHH---HHHHhhcCC-CCCeEEEcCCchHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM--LSNLTHKPVIKLS---EKLSSLTQY-KLGHCFYGSDGASAVEV 109 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~~l~---~~l~~~~~~-~~~~v~~~~sgteA~~~ 109 (430)
|+|..++. ..++.|.+++.+.+....... ...+.......++ +.+.+.+++ ++++|+||+|++|++..
T Consensus 2 yld~aa~~------~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~ 75 (382)
T TIGR03403 2 YLDNNATT------MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNW 75 (382)
T ss_pred cccCcCCC------CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH
Confidence 66755542 257899999999887532111 1112222223333 334444443 56899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++.+...... +++++.|++....++........ ......++..++.+.+... |++
T Consensus 76 ~~~~~~~~~~~--~~~~~~vi~~~~e~ps~~~~~~~----------~~~~G~~v~~v~~~~~g~~------------d~~ 131 (382)
T TIGR03403 76 VLKGVYFDEIL--KGGKNHIITTEVEHPAVRATCAF----------LESLGVEVTYLPINEQGTI------------TAE 131 (382)
T ss_pred HHHHHHHhhcc--cCCCCEEEEcCCccHHHHHHHHH----------HHHCCCEEEEEecCCCCCC------------CHH
Confidence 98866320000 01345677655444333211110 0111233445554432222 788
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~ 269 (430)
++++.++ ++++++++.. ++|++|...+ +++|.++|+++|+++|+|++|+ ++.. .++.....+|++++
T Consensus 132 ~l~~~i~---~~t~lv~~~~-~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~----~~~~~~~~~D~~~~ 198 (382)
T TIGR03403 132 QVREAIT---EKTALVSVMW-ANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI----PVDVQKAGVDFLSF 198 (382)
T ss_pred HHHHhcc---cCCeEEEEEc-ccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC----ccCccccCCCEEEE
Confidence 8988885 4567888888 8999998888 8999999999999999999986 4322 12222345788887
Q ss_pred e--cccCCCccccEEEEEcHHHH--HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHH
Q psy14484 270 S--KGITGGYLPLSLVMTTDKIY--NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITK 343 (430)
Q Consensus 270 s--K~l~gG~~~ig~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~ 343 (430)
| |.++. ..+|+++++++.. ..+........ ....+.+..++.++.++++...+ +...++++++.+++.+
T Consensus 199 s~~K~~gp--~G~g~l~vr~~~~~~p~~~g~~~~~~---~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~ 273 (382)
T TIGR03403 199 SAHKFHGP--KGVGGLYIRKGVELTPLFHGGEHMGG---RRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLED 273 (382)
T ss_pred cchhhCCC--CceEEEEECCCCCCCCcccCCCCCCC---cccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 7 95432 2478888887641 11100000000 11234566677667777765543 2334566777777777
Q ss_pred HHHchhcCCCeeeEe----ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------------------
Q psy14484 344 ALTSLITHPKIINFR----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------------------- 397 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------------------- 397 (430)
.|+++ +.+.... ..+.++.+.+. . . . ...+.+.|.++||.++.+
T Consensus 274 ~L~~~---~~~~~~~~~~~~~~~~~~~~~~-~-~---~--~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~ 343 (382)
T TIGR03403 274 ALLEL---PDVFVVGDREHRVPNTILISIK-G-V---E--GEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKE 343 (382)
T ss_pred HHhcC---CCEEEECCCCCCcCCEEEEEeC-C-C---C--HHHHHHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChH
Confidence 77654 3332221 11345555554 2 1 1 246777788999999842
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.+|++++..+|++||++++++|+++++++
T Consensus 344 ~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~ 376 (382)
T TIGR03403 344 LAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRL 376 (382)
T ss_pred HhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1469999999999999999999999988764
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=180.07 Aligned_cols=320 Identities=14% Similarity=0.157 Sum_probs=214.9
Q ss_pred CCCCCHHHHHHHHHHHhhccccc---cCCC---CCHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhh
Q psy14484 48 FGHSNSYINKALKNQLNKLEHVM---LSNL---THKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 48 lG~~~p~v~~a~~~~~~~~~~~~---~~~~---~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~ 120 (430)
.|..++.|.+++.+.+.+..... .... ..+..+++++.++++++++. ++|+|++|++++++.++..+....
T Consensus 8 ~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~-- 85 (371)
T PF00266_consen 8 TGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPL-- 85 (371)
T ss_dssp S-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHG--
T ss_pred ccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcccccc--
Confidence 34568899999999887643221 1111 12556788899999999888 789999999999999999885311
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
.++++|++....|++......... .....++..++.+..... |++++++.+. +
T Consensus 86 ---~~g~~vl~~~~~~~s~~~~~~~~~---------~~~g~~v~~i~~~~~~~~------------~~~~~~~~l~---~ 138 (371)
T PF00266_consen 86 ---KPGDEVLVTSNEHPSNRYPWEEIA---------KRKGAEVRVIPADPGGSL------------DLEDLEEALN---P 138 (371)
T ss_dssp ---TTTCEEEEEESSHHHHHHHHHHHH---------HHTTEEEEEEEEGTTSSC------------SHHHHHHHHH---T
T ss_pred ---cccccccccccccccccccccccc---------ccchhhhccccccccchh------------hhhhhhhhhc---c
Confidence 166788888877776531111110 011123344444332222 7899999996 6
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCcc
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYL 278 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~ 278 (430)
++.+|++.. +.+.+|...| +++|.++|+++|+++++|.+|+ +|.. .++.....+|++++| | ++|+ .
T Consensus 139 ~~~lv~~~~-~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~----~id~~~~~~D~~~~s~~K-l~gp-~ 206 (371)
T PF00266_consen 139 DTRLVSISH-VENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCV----PIDLDELGADFLVFSSHK-LGGP-P 206 (371)
T ss_dssp TESEEEEES-BETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTS----S--TTTTTESEEEEESTS-TTSS-S
T ss_pred ccceEEeec-ccccccEEee----eceehhhhhccCCceeEechhc-cccc----cccccccccceeeecccc-cCCC-C
Confidence 889999999 9999999988 9999999999999999999987 5443 133334567989887 8 8776 4
Q ss_pred ccEEEEEcHHHHHhhhccCCccc----------------c-cccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHH
Q psy14484 279 PLSLVMTTDKIYNSIYYKNNINI----------------F-LHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDM 338 (430)
Q Consensus 279 ~ig~~~~~~~~~~~~~~~~~~~~----------------~-~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~ 338 (430)
.+|+++++++..+.+.+...... . ...+ +.+.....+..++++.+++ +.+.++..++.
T Consensus 207 G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G--T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~ 284 (371)
T PF00266_consen 207 GLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGG--TPNVPAIYALNEALKLLEEIGIERIRERIRELA 284 (371)
T ss_dssp TEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSS--S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheehhhhhhccccccccccccccccchhccccccccccccc--ceeeehhhhHHHHHhhhhccccccchhhhhhHH
Confidence 69999999998887754100000 0 0011 2355555666677776643 45667788888
Q ss_pred HHHHHHHHchhcCCCe--eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------------CCEEEE
Q psy14484 339 KKITKALTSLITHPKI--INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------GNTVYL 403 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------------~~~lR~ 403 (430)
+++.+.|+++.....+ .....++.++.+.+. .. . ...+.+.|.++||.+..+ ++.+|+
T Consensus 285 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~----~--~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRv 357 (371)
T PF00266_consen 285 EYLREALEELPGIEVLGPDDEPRRPSIVSFNLP-GS----D--ADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRV 357 (371)
T ss_dssp HHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET-TS----S--HHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEE
T ss_pred HHHHhhhhcCCceeEeeecccccccceEEEeec-CC----C--HHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEE
Confidence 8888888776221111 123445677777776 31 1 367889999999999873 279999
Q ss_pred eCCCCCCHHHHHHH
Q psy14484 404 MPPYILNKNEIQHM 417 (430)
Q Consensus 404 ~~~~~~t~e~i~~~ 417 (430)
+++..+|++||+++
T Consensus 358 S~~~~nt~~dv~~l 371 (371)
T PF00266_consen 358 SLHYYNTEEDVDRL 371 (371)
T ss_dssp E-GTTSSHHHHHHH
T ss_pred eccCCCCHHHHhhC
Confidence 99999999999875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=181.51 Aligned_cols=336 Identities=11% Similarity=0.080 Sum_probs=203.8
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCC------CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN------LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
+.|+|..+. +.-++.|.+++.+.+.......... ...+..+++++.+++.++.++++|+|++|+++++
T Consensus 4 ~~yld~aa~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~ 77 (402)
T TIGR02006 4 PIYLDYAAT------TPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESN 77 (402)
T ss_pred cEEeeCCcC------CCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHH
Confidence 468887654 2358999999988875432111100 1123456778889999987888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.+++.+..... ++++.|++.... |.......... .....++..++.+.+... |
T Consensus 78 ~~~l~~l~~~~~----~~g~~Vi~~~~~-h~s~~~~~~~~---------~~~g~~v~~v~~~~~~~~------------d 131 (402)
T TIGR02006 78 NLAIKGIAHFYK----SKGNHIITSKTE-HKAVLDTCRYL---------EREGFEVTYLPPKSNGLI------------D 131 (402)
T ss_pred HHHHHHHHHhhc----CCCCEEEECCCc-cHHHHHHHHHH---------HhcCCEEEEEccCCCCcC------------C
Confidence 999887653210 144566665544 44322221100 011123344544432222 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
++++++.+. ++++++++.. +++++|...| +++|.++|+++|+++|+|++|+ +|.. .++..+..+|++
T Consensus 132 ~~~l~~~l~---~~~~lv~v~~-~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~----~~~~~~~~~D~~ 198 (402)
T TIGR02006 132 LEELKAAIR---DDTILVSIMH-VNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKI----PINVNELKVDLM 198 (402)
T ss_pred HHHHHHhcC---CCCEEEEEEC-CCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCc----ccCccccCCCEE
Confidence 889988885 4578888888 9999998887 9999999999999999999997 5432 122334568999
Q ss_pred eee--cccCCCccccEEEEEcHHHHHhhhcc--C--CcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHH
Q psy14484 268 CLS--KGITGGYLPLSLVMTTDKIYNSIYYK--N--NINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMK 339 (430)
Q Consensus 268 ~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~--~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~ 339 (430)
++| |.++. ..+|+++++++....+.+. + ..+.+ .. .+.+...+.+..++++.++. +...++.+++.+
T Consensus 199 ~~s~~K~~gp--~G~G~l~~~~~~~~~~~~~~~g~~~~~~~-~~--gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~ 273 (402)
T TIGR02006 199 SISGHKIYGP--KGIGALYVRRKPRVRLEALIHGGGHERGM-RS--GTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRD 273 (402)
T ss_pred EEehhhhcCC--CceEEEEEccCCCCCCCceecCCCccCCc-cC--CCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 998 96543 3589999987644333220 0 00111 11 12344555555567776543 334466777777
Q ss_pred HHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----------------------
Q psy14484 340 KITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP---------------------- 396 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~---------------------- 396 (430)
++++.|+++........... ....+.+.+. .- . .+.+...+ +++.++.
T Consensus 274 ~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~-~~---~---~~~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~ 344 (402)
T TIGR02006 274 RLLNGIKSIEEVYLNGDLEHRVPGNLNVSFN-YV---E---GESLIMAL--KDLAVSSGSACTSASLEPSYVLRALGIND 344 (402)
T ss_pred HHHHHHhcCCCEEEeCCccccCCCeEEEEEe-Cc---C---HHHHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCCh
Confidence 88877766522111111111 1111123333 11 0 12343333 2443321
Q ss_pred --cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 --IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 --~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..+.+|++++..+|++||+++++.|+++++++
T Consensus 345 ~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 345 ELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred hhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999999999999999999999987653
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-20 Score=181.25 Aligned_cols=345 Identities=10% Similarity=0.007 Sum_probs=201.0
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc------ccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCch
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE------HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGA 104 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgt 104 (430)
+..++|+..| ...++ .+|.+.+++.+.+.... .+....+..++++.+++.+.+.. +.++++|++|+|+.
T Consensus 33 ~~~~i~l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~ 109 (409)
T PRK07590 33 EAKIIRLGIG--DVTQP-LPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK 109 (409)
T ss_pred CCceEEecCc--CCCCC-CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence 5578898777 34454 46888999998876531 11112223345556666554433 46788999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++...+.+ +. +++.|++.+|+|.++.......+.... ..... ...+...++.......
T Consensus 110 ~al~~l~~~-~~--------~gd~V~v~~P~Y~~~~~~~~~~g~~~~-~~~~~-~~~~~~~v~~~~~~~~---------- 168 (409)
T PRK07590 110 CDTGNILDI-FG--------PDNTIAVTDPVYPVYVDTNVMAGRTGE-ANEDG-RYSGIVYLPCTAENNF---------- 168 (409)
T ss_pred HHHHHHHHh-cC--------CCCEEEEeCCCCcchHHHHHHcCCccc-ccccc-cccceeEeecccccCC----------
Confidence 999875432 22 668899999999987544443332100 00000 0001223332210000
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-ccc-ccCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHAEI 262 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~-~~~~~ 262 (430)
.++ +. ..+++++++.. ++|++| ...+.+.+++|.++|++|++++|.||+|..|...+.. -.. ...+.
T Consensus 169 --~~d-----~~--~~~~k~i~l~n-P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~ 237 (409)
T PRK07590 169 --VPE-----LP--EEKVDIIYLCF-PNNPTG-TVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGA 237 (409)
T ss_pred --ccc-----Cc--ccCceEEEEeC-CCCCcC-CcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCc
Confidence 011 11 13456666555 778888 5678888999999999999999999999977543321 111 11111
Q ss_pred ---CCceeeeecccC-CCccccEEEEEcHHHHHhhhccC-----CcccccccCCC-CCCHHHHHHHHHHHHH-Hh--hcC
Q psy14484 263 ---WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKN-----NINIFLHSHSY-SGNPLACCAALATLEI-FN--KDN 329 (430)
Q Consensus 263 ---~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~-----~~~~~~~~~t~-~~~~~~~~aa~~~l~~-~~--~~~ 329 (430)
...+-+|||.++ .| +|+|++++++++++.+.... .........++ +.+.+++.++.++++. .. -..
T Consensus 238 ~~~vi~~~SfSK~~~~pG-lRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~ 316 (409)
T PRK07590 238 RECAIEFRSFSKTAGFTG-TRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKE 316 (409)
T ss_pred ccceEEEecCccccCCcC-ceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHH
Confidence 112337999997 57 89999999998876321000 00000112222 3566777766666641 00 112
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCE
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNT 400 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~ 400 (430)
..+.++++.+.+.+.|+.. + +....+. |.++++.+. ... . +.++++.++ +.||.+.|+ .++
T Consensus 317 ~~~~~~~~r~~l~~~L~~~---~-~~~~~~~g~~f~wi~~~-~~~--~---~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 386 (409)
T PRK07590 317 LIDYYMENAKIIREGLESA---G-FEVYGGVNAPYIWVKTP-DGM--S---SWDFFDKLLQEANVVGTPGSGFGPSGEGY 386 (409)
T ss_pred HHHHHHHHHHHHHHHHHhc---C-CceecCCcceEEEEECC-CCC--C---HHHHHHHHHHHCCEEEeChhHhCCCCCCE
Confidence 3444555555666666543 2 2223343 556677665 321 1 256777776 569999875 257
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+|++. ..+++++++++++|.+++
T Consensus 387 iRi~~--~~~~~~l~~~l~rl~~~~ 409 (409)
T PRK07590 387 FRLSA--FGSRENVLEAMERIKKAL 409 (409)
T ss_pred EEEEc--cCCHHHHHHHHHHHHhhC
Confidence 89973 468999999999998753
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-20 Score=177.03 Aligned_cols=334 Identities=12% Similarity=0.049 Sum_probs=203.9
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~ 109 (430)
.+|+.++++... .+|.+.+++.+.+.... .........+..++++++++++++.+.+.+++++||++++..
T Consensus 20 ~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~ 91 (373)
T TIGR03812 20 SDGRILGSMCTN--------PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQ 91 (373)
T ss_pred CCCcEEEEEeCC--------chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHH
Confidence 345555554442 57788888877654321 111111223555889999999998767788899999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++.+++.... .+ .+++.|++.+++|..+... .. ....+...++.+..+.. |++
T Consensus 92 ~~~~~~~~~~-~~-~~g~~vl~~~~~h~~~~~~-~~------------~~G~~~~~v~~~~~~~~------------d~~ 144 (373)
T TIGR03812 92 AVRAAKNLAR-EE-KRTPNIIVPESAHFSFEKA-AE------------MLGLELRYAPLDEDYTV------------DVK 144 (373)
T ss_pred HHHHHHHHHh-cc-CCCcEEEECCcchHHHHHH-HH------------HcCCeEEEEeeCCCCCc------------CHH
Confidence 8877654210 00 1335788777665543211 11 11223344444332222 889
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc----ccc-cccccCCCCC
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT----GKF-FACEHAEIWP 264 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~----g~~-~~~~~~~~~~ 264 (430)
++++.+.+ +..+++++.| ++++|.+.+ +++|.++|+++|+++|+|++|.++... |.. ..++......
T Consensus 145 ~l~~~l~~--~~~~vv~~~~--~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~ 216 (373)
T TIGR03812 145 DVEDLIDD--NTIGIVGIAG--TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGV 216 (373)
T ss_pred HHHHHHhh--CcEEEEEECC--CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCC
Confidence 99998863 2334444444 467888877 999999999999999999999744110 000 0011111134
Q ss_pred ceeeee--cccCCCccccEEEE-EcHHHHHhhhccCCcccccccC---C--CCCCHHHHHHHHHHHHHHhh---cCHHHH
Q psy14484 265 DFLCLS--KGITGGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSH---S--YSGNPLACCAALATLEIFNK---DNILQR 333 (430)
Q Consensus 265 d~~~~s--K~l~gG~~~ig~~~-~~~~~~~~~~~~~~~~~~~~~~---t--~~~~~~~~~aa~~~l~~~~~---~~~~~~ 333 (430)
|.++++ |...++ .|.|+++ .++++.+.+.. ..++.... . .+.+..+.+++.++|+.+.+ ++..++
T Consensus 217 d~~~~s~~K~~~~~-~~~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~ 292 (373)
T TIGR03812 217 QSITIDPHKMGLSP-IPAGGILFRSKSYLKYLSV---DAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAE 292 (373)
T ss_pred CEEEECccccCCCc-CCceEEEEeCHHHHhhhcc---cCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 666554 633333 5787665 56777665532 01111111 0 12234566677777876643 345678
Q ss_pred HHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--CCEEEEeCCCCCCH
Q psy14484 334 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNK 411 (430)
Q Consensus 334 ~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~~~~t~ 411 (430)
..++.+++++.|+++ +......+...++.+... + ...+.+.|.++||.+... ++++|++++..+|+
T Consensus 293 ~~~~~~~l~~~L~~~---g~~~~~~~~~~~v~~~~~-~--------~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~ 360 (373)
T TIGR03812 293 CMENTRYLVEELKKI---GFEPVIEPVLNIVAFEVD-D--------PEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTR 360 (373)
T ss_pred HHHHHHHHHHHHHhC---CCeEEcCCCceEEEEEeC-C--------HHHHHHHHHHCCceeccCCCCCEEEEEEECCCCH
Confidence 888999999988876 221112233445555444 2 246889999999999876 46899999999999
Q ss_pred HHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQ 423 (430)
Q Consensus 412 e~i~~~~~~l~~ 423 (430)
+|+++++++|++
T Consensus 361 edid~l~~~L~~ 372 (373)
T TIGR03812 361 EHIEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=180.85 Aligned_cols=341 Identities=13% Similarity=0.090 Sum_probs=202.8
Q ss_pred EEEecccccccccCCCCC--HHHHHHHHHHHhhcc------ccccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCch
Q psy14484 35 RYLDAISSWWVNLFGHSN--SYINKALKNQLNKLE------HVMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGA 104 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgt 104 (430)
..+||..|.. .+ ... +.+.+++.+.+.... .+....+..++++.+++.+.+.. ++++++|++|+|++
T Consensus 31 ~~i~l~~g~p--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~ 107 (416)
T PRK09440 31 GAIMLGGGNP--AH-IPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQ 107 (416)
T ss_pred CceeccCCCC--Cc-cCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChH
Confidence 4678876532 11 122 255666666554321 11112233356667777776543 35778999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEE-EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC---CCCCCCCCh
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFIC-LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSA 180 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~-~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 180 (430)
+|+..+++++.... +..+++.|++ .+|+|+++...+......... ....++.+.+ +..
T Consensus 108 ~al~~~~~~l~~~~---~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------ 169 (416)
T PRK09440 108 SAFFYLFNLFAGRR---ADGSLKKILFPLAPEYIGYADAGLEEDLFVSY---------RPNIELLPEGQFKYHV------ 169 (416)
T ss_pred HHHHHHHHHHhccc---cCCCCCeEEEecCCCchhhHHHhhccCceeec---------ccccccccccccccCC------
Confidence 99999998776310 0013567888 699999885432221110000 0011111111 111
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cccc
Q psy14484 181 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEH 259 (430)
Q Consensus 181 ~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~ 259 (430)
|+++|+ +. .+++++++.. ++|++| ...+.+.+++|.++|+++++++|+||+|..+. ....+ ....
T Consensus 170 ------d~~~l~--~~---~~~~~i~l~~-P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~-~~~~~~~~~~ 235 (416)
T PRK09440 170 ------DFEHLH--ID---EDTGAICVSR-PTNPTG-NVLTDEELEKLDALARQHNIPLLIDNAYGPPF-PGIIFSEATP 235 (416)
T ss_pred ------CHHHcc--cC---CCceEEEEec-CCCCCC-ccCCHHHHHHHHHHHHHcCCcEEEeCCccccC-CCcchhhcCc
Confidence 677776 22 3556666666 778888 55678889999999999999999999996331 11111 0100
Q ss_pred --CCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH-------
Q psy14484 260 --AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI------- 330 (430)
Q Consensus 260 --~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~------- 330 (430)
.+...-+.+|||....| +|+|++++++++++.+.. .......+.+.+++.++.++++ +..+
T Consensus 236 ~~~~~vI~~~SfSK~~~pG-lRiG~~i~~~~l~~~~~~------~~~~~~~~~s~~~q~~~~~~l~---~~~~~~~~~~~ 305 (416)
T PRK09440 236 LWNPNIILCMSLSKLGLPG-VRCGIVIADEEIIEALSN------MNGIISLAPGRLGPAIAAEMIE---SGDLLRLSETV 305 (416)
T ss_pred cccCCeEEEecccccCCCc-ceEEEEeCCHHHHHHHHH------HHHHhccCCCcHHHHHHHHHhc---cchHHHHHHHH
Confidence 11112234799974446 899999999999887765 2222334557777777777764 2222
Q ss_pred -HHHHHHHHHHHHHHHHch-hcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----C----
Q psy14484 331 -LQRISQDMKKITKALTSL-ITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----G---- 398 (430)
Q Consensus 331 -~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~---- 398 (430)
...++++.+.+.+.|++. .... +....+. |.++++.+. .... . ..++.+.|.++||.+.|+ +
T Consensus 306 ~~~~~~~r~~~~~~~L~~~l~~~~-~~~~~p~gg~fiw~~~~-~~~~-~---~~~~~~~l~~~gV~v~pg~~F~~~~~~~ 379 (416)
T PRK09440 306 IRPFYRQKVQLAIALLRRYLPDEP-CLIHKPEGAIFLWLWFK-DLPI-T---TEELYQRLKARGVLVVPGHYFFPGLDED 379 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-eEEecCCCceEEEEECC-CCCC-C---HHHHHHHHHHCCEEEechHhhCCCCccc
Confidence 223344444555555432 2221 2223454 566666665 3111 1 256888888999999874 1
Q ss_pred -----CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 -----NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 -----~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++|++++ .+++++++++++|++++.+.
T Consensus 380 ~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~~~ 412 (416)
T PRK09440 380 WPHAHQCIRMNYV--QDDEEIEKGIAILAEEVEKA 412 (416)
T ss_pred cCCcCceEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 27888765 47999999999999998764
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.7e-20 Score=176.70 Aligned_cols=302 Identities=15% Similarity=0.158 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHhhcCCCC--CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 77 KPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~--~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
+...++++.++++++... +.+++++||+++++.++..+.. +++.+++.+++|.+.....
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~--------~~~~vlv~~~~~~~~~~~~----------- 97 (368)
T PRK13479 37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVP--------RDGKVLVPDNGAYGARIAQ----------- 97 (368)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccC--------CCCeEEEEeCCchHHHHHH-----------
Confidence 567889999999997543 4588999999999999988754 4567777777666542100
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 234 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 234 (430)
........+..++.+.+... |++++++++++. .++.++.+.. +++++|...| +++|.++|++
T Consensus 98 ~~~~~g~~~~~i~~~~~~~~------------d~~~l~~~l~~~-~~~~~v~~~~-~~~~tG~~~~----~~~i~~l~~~ 159 (368)
T PRK13479 98 IAEYLGIAHVVLDTGEDEPP------------DAAEVEAALAAD-PRITHVALVH-CETTTGILNP----LDEIAAVAKR 159 (368)
T ss_pred HHHHcCCcEEEEECCCCCCC------------CHHHHHHHHHhC-CCCcEEEEEc-ccCccccccC----HHHHHHHHHH
Confidence 01111233445554432222 789999988753 3455666666 7788998888 8999999999
Q ss_pred cCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEcHHHHHhhhccCCccccc---------
Q psy14484 235 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL--------- 303 (430)
Q Consensus 235 ~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~--------- 303 (430)
+|+++|+|++++ ++.. ..... ...+|+++ ++|.+.|. .++|++++++++.+.+... ..++.
T Consensus 160 ~~~~livDa~~~-~g~~--~~~~~--~~~~d~~v~s~~K~l~g~-~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 231 (368)
T PRK13479 160 HGKRLIVDAMSS-FGAI--PIDIA--ELGIDALISSANKCIEGV-PGFGFVIARRSELEACKGN--SRSLSLDLYDQWAY 231 (368)
T ss_pred cCCEEEEEcccc-cCCc--ccccc--ccCceEEEecCccccccC-CCceEEEECHHHHHHhhcC--CCCeeecHHHHHhh
Confidence 999999998774 6532 22222 33467664 56988764 3579999999888776541 11100
Q ss_pred ----ccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHchhcCCCeee-EeecceEEEEEEeecCCc
Q psy14484 304 ----HSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 304 ----~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~ 374 (430)
....|+.+..+..+..++++.+.+ ++..+++.++.+++++.|+++ +...+.. .........+.+. ....
T Consensus 232 ~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~ 309 (368)
T PRK13479 232 MEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAP-ADPA 309 (368)
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECC-CCCC
Confidence 111235566666666677765533 234466777777888877765 2221111 0111223334333 2110
Q ss_pred cchhHHHHHHHHHHHCCcEEeec----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 375 QIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.. ..++.+.|.++||.+.++ .+++|++....+++++++.++++|++++.++
T Consensus 310 -~~--~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 310 -YD--FKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred -cC--HHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11 357899999999999875 2589998767889999999999999988753
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-20 Score=179.35 Aligned_cols=340 Identities=12% Similarity=0.047 Sum_probs=197.0
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc--ccCCCCCHHHHHHHHHHHhhc---CCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKLSSLT---QYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~---~~~~~~v~~~~sgteA 106 (430)
.+..++|+..| ...++ .+|.+.+++.+.+...... ...+.+.....++++.+++.+ ..++++|++|+|++++
T Consensus 31 ~~~~~i~l~~~--~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~a 107 (402)
T TIGR03542 31 PSADIIRLGIG--DTTQP-LPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCD 107 (402)
T ss_pred CCCCeEEcCCC--CCCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHH
Confidence 36778998876 34444 4688899998877653210 111112222334444444432 3578899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+...+.+ .. +++.|++.+|+|.++.......+. +.....- ........++.......
T Consensus 108 l~~l~~l-~~--------~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~-~~~~~~~~v~~~~~~~~------------ 164 (402)
T TIGR03542 108 VFRLQSL-FG--------SDNTVAVQDPVYPAYVDSNVMAGR-AGVLDDD-GRYSKITYLPCTKENNF------------ 164 (402)
T ss_pred HHHHHHh-cC--------CCCEEEEeCCCCcchHHHHHHcCC-ccccccc-cccceEEEeecchhhCC------------
Confidence 9875433 22 567899999999988554443322 1110000 00001122222110000
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-cccc-ccCC---
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFAC-EHAE--- 261 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~-~~~~--- 261 (430)
..+ ++ + ..+++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..|...+. .... ...+
T Consensus 165 ~~~-~~----~-~~~~~~i~l~n-P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 236 (402)
T TIGR03542 165 IPD-LP----E-EPKIDIIYLCS-PNNPTG-TVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKE 236 (402)
T ss_pred CCC-cc----c-cCCceEEEEeC-CCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcc
Confidence 111 11 1 13456666666 788888 667888899999999999999999999998754332 1111 1111
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHH--------HhhhccCCcccccccCCC-CCCHHHHHHHHHHHHH--Hh-hc
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIY--------NSIYYKNNINIFLHSHSY-SGNPLACCAALATLEI--FN-KD 328 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~--------~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~~--~~-~~ 328 (430)
....+-+|||.++ .| +|+|+++++++++ ..+.. ....++ +.+.+++.++.+.+.. .. ..
T Consensus 237 ~vi~~~SfSK~~g~pG-lRiG~~i~~~~l~~~~~~~~~~~~~~-------~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~ 308 (402)
T TIGR03542 237 CAIEFRSFSKTAGFTG-VRLGWTVVPKELTYADGHSVIQDWER-------RQCTKFNGASYPVQRAAEAAYAGEGLQPIL 308 (402)
T ss_pred cEEEEecCccccCCCC-cceEEEEecHHHhhcchhhHHHHHHH-------HhhhcccCCCHHHHHHHHHHHcCcchhHHH
Confidence 1122347999997 56 8999999998876 22211 011222 3566777666665541 00 01
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GN 399 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~ 399 (430)
+..+.++++.+.+.+.|+.. . +....+ .|.++++.+. .... +.++.+.|+ +.||.+.|+ .+
T Consensus 309 ~~~~~~~~~~~~~~~~L~~~---~-~~~~~~~~~~f~~v~l~-~~~~-----~~~l~~~l~~~~gv~v~pg~~f~~~~~~ 378 (402)
T TIGR03542 309 EAISYYMENARILRKALEAA---G-FKVYGGEHAPYLWVKTP-EGIS-----SWDFFDFLLYQYHVVGTPGSGFGPSGEG 378 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc---C-ceecCCCceeEEEEECC-CCCC-----HHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 12334455555565655543 2 222233 3567777765 3211 246888877 569999885 25
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
++|++. ..+++++++++++|+++|
T Consensus 379 ~iRis~--~~~~~~l~~~l~~l~~~~ 402 (402)
T TIGR03542 379 FVRFSA--FGKRENIVEACERIKEAL 402 (402)
T ss_pred EEEEEe--cCCHHHHHHHHHHHHhhC
Confidence 789973 458899999999998753
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=175.07 Aligned_cols=320 Identities=14% Similarity=0.129 Sum_probs=202.3
Q ss_pred CCHHHHHHHHHHHhhccc-cccCCCC-----CHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCC
Q psy14484 51 SNSYINKALKNQLNKLEH-VMLSNLT-----HKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGF 123 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~-~~~~~~~-----~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~ 123 (430)
.++.+.+++.+.+..... .....+. .....++++.+++.++... ++|++++|+++++..++.....
T Consensus 12 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~------- 84 (376)
T TIGR01977 12 KPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLK------- 84 (376)
T ss_pred CCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccC-------
Confidence 457899999888876421 1111121 2556788889999987543 4899999999999998877543
Q ss_pred CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 124 ~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++.|++.+..|+.......... .....+...++.+.... .|++++++.++ ++++
T Consensus 85 -~gd~vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~------------~d~~~l~~~~~---~~~~ 139 (376)
T TIGR01977 85 -EGDHVITTPMEHNSVARPLECLK---------EQIGVEITIVKCDNEGL------------ISPERIKRAIK---TNTK 139 (376)
T ss_pred -CCCEEEECcchhhHHHHHHHHHH---------HHcCcEEEEEecCCCCC------------cCHHHHHHhcC---CCCe
Confidence 56778877666544321100000 00112233443332221 17889998885 4678
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccE
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLS 281 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig 281 (430)
++++.. +++++|...+ +++|.++|+++|+++|+|++++ +|... +... ...+|++++| |.+++. ..+|
T Consensus 140 ~v~~~~-~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~--~~~~--~~~~D~~~~s~~K~l~~p-~g~g 208 (376)
T TIGR01977 140 LIVVSH-ASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIP--IDMT--ELAIDMLAFTGHKGLLGP-QGTG 208 (376)
T ss_pred EEEEEC-CCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccC--CCch--hcCCCEEEecccccccCC-CCce
Confidence 888888 8999998888 8999999999999999999996 54321 1222 2357887665 988764 3477
Q ss_pred EEEEcHHH-HHhhhccCC-c------------ccccccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHH
Q psy14484 282 LVMTTDKI-YNSIYYKNN-I------------NIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKA 344 (430)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~-~------------~~~~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~ 344 (430)
+++.+++. ...+...+. . +.+. .+ +.+...+.+..++++.+.+. ...++.+++.+++.+.
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~--t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~ 285 (376)
T TIGR01977 209 GLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFE-SG--TLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNG 285 (376)
T ss_pred EEEEcCCcCcCceecCCCccccccccccccchhhcc-CC--CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 78777653 111111000 0 0011 11 23455566666778776543 4567788888888888
Q ss_pred HHchhcCCCeee--EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec---------------CCEEEEeCC
Q psy14484 345 LTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI---------------GNTVYLMPP 406 (430)
Q Consensus 345 l~~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~---------------~~~lR~~~~ 406 (430)
|+++........ ....+.++.+.+. .. . ...+.+.|.++ ||.+..+ .+.+|++++
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~---~~~~~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~ 358 (376)
T TIGR01977 286 LREINKVKIYGPADPANRVGVVSFTVE-GI---D---SEEVADILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLG 358 (376)
T ss_pred HhcCCCeEEeCCCCccccCCeEEEEEC-CC---C---HHHHHHHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecC
Confidence 876522211111 1113455666554 21 1 35788999887 8887642 268999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~ 423 (430)
..+|++|++.++++|++
T Consensus 359 ~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 359 YFNTEEEIEKLLEALSE 375 (376)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-19 Score=174.50 Aligned_cols=329 Identities=9% Similarity=0.037 Sum_probs=194.9
Q ss_pred CCCCHHHHHHHHHHHhhcccccc-CC----CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC
Q psy14484 49 GHSNSYINKALKNQLNKLEHVML-SN----LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 123 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~~~-~~----~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~ 123 (430)
|+-.|.+++++.+.-........ .. ..++...++++.+++.++. +++++++|+++++..++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~~------- 81 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLCE------- 81 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhcC-------
Confidence 55678888888876532221110 11 1235678999999999964 8999999999999999987754
Q ss_pred CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC--CCCCCCChhHHHHHHHHHHHHHHHhCC--
Q psy14484 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR--NINKGNSANEIARCAIFDLEILLKKNH-- 199 (430)
Q Consensus 124 ~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~le~~l~~~~-- 199 (430)
+++.|++..++|.+.... ... .......++.+... .. |++++++++++..
T Consensus 82 -~gd~Vl~~~~~~~~~~~~-~~~------------~g~~~~~v~~~~~~~~~~------------d~~~l~~~l~~~~~~ 135 (361)
T cd06452 82 -KGDWVVVDGLAHYTSYVA-AER------------AGLNVREVPNTGHPEYHI------------TPEGYAEVIEEVKDE 135 (361)
T ss_pred -CCCEEEEcCCcchHHHHH-HHh------------cCCEEEEEecCCCCCccc------------CHHHHHHHHHHHhhc
Confidence 566777766655443211 111 11233344433211 11 7888988886421
Q ss_pred --CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCc
Q psy14484 200 --NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY 277 (430)
Q Consensus 200 --~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~ 277 (430)
.+++++++.. +++++|...+ +++|.++|+++|+++|+||+|. ++.. .+....++....+.+++|+++++
T Consensus 136 ~~~~~~lv~l~~-p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~--~~~~~~~~~d~~~~s~~K~l~~~- 206 (361)
T cd06452 136 FGKPPALALLTH-VDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRM--PVSGKELGADFIVGSGHKSMAAS- 206 (361)
T ss_pred cCCCceEEEEEC-CCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCc--CCCHHHcCCCEEEecCCccccCC-
Confidence 3577888877 8888897766 9999999999999999999987 4322 12222233322344678999876
Q ss_pred cccEEEEEcHHHHHhhhccCCccc----ccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNINI----FLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~~----~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
.++|++++++++++.+........ ...+.+. .......+.++++.+.+ -....+..+..+++++.|+++....
T Consensus 207 ~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~ 284 (361)
T cd06452 207 APIGVLATTEEWADIVFRTSQMFKIKEVELLGCTL--RGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKIEGIK 284 (361)
T ss_pred CCeEEEEECHHHHHHHhccccccccceeeeecccc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 589999999998887754110000 0011111 12223334444543221 1112222334567777777652221
Q ss_pred CeeeEeecceEEEEEEeecCCc-c--chhHHHHHHHHHHHCCcEEeec--CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 353 KIINFRQKGMIWAFDVIIEDPE-Q--IETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~-~--~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+........++.+... .-.. . ......++.+.|+++||..... ++++|++. ..+++++++.++++|+++.
T Consensus 285 v~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 285 QLGEKPKNHDLMFFETP-SFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred EECCCCCCCceEEEEcC-CcchhhhhccccchhHHHHHHHcCceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHHHh
Confidence 11111234445544432 1000 0 0000236899999999996543 35788876 3479999999999998654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=176.85 Aligned_cols=314 Identities=12% Similarity=0.062 Sum_probs=195.0
Q ss_pred CCCCHHHHHHHHHHHhhccccccC------CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 49 GHSNSYINKALKNQLNKLEHVMLS------NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
+.-++++.+++.+.+......... ....+..+++++.++++++.++++++|++|+++|++.++..+.....
T Consensus 9 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~--- 85 (364)
T PLN02651 9 TPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYK--- 85 (364)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc---
Confidence 346789999999887542111100 01124567888999999987788999999999999999987754211
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++++|++.+..|+........ ......+...++.+..... |+++++++++ +++
T Consensus 86 -~~g~~vl~~~~~h~s~~~~~~~----------~~~~g~~v~~v~~~~~~~~------------d~~~l~~~i~---~~t 139 (364)
T PLN02651 86 -DKKKHVITTQTEHKCVLDSCRH----------LQQEGFEVTYLPVKSDGLV------------DLDELAAAIR---PDT 139 (364)
T ss_pred -CCCCEEEEcccccHHHHHHHHH----------HHhcCCEEEEEccCCCCcC------------CHHHHHHhcC---CCc
Confidence 1446677655444332111111 0011223345554432222 7889999885 468
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCcccc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPL 280 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~i 280 (430)
+++++.. +++++|.+.| +++|.++|+++|+++++|++|+ +|.. .++...+.+|++++| | ++|. ..+
T Consensus 140 ~lv~v~~-~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~----~~~~~~~~~D~~~~s~hK-~~gp-~G~ 207 (364)
T PLN02651 140 ALVSVMA-VNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI----PVDVDDLGVDLMSISGHK-IYGP-KGV 207 (364)
T ss_pred EEEEEEC-CCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc----ccCcccCCCCEEEechhh-hCCC-Cce
Confidence 8889988 9999998888 9999999999999999999997 4322 122334457999876 7 4432 468
Q ss_pred EEEEEcHHHHHhhhcc--C--CcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHc-hhcCCC
Q psy14484 281 SLVMTTDKIYNSIYYK--N--NINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTS-LITHPK 353 (430)
Q Consensus 281 g~~~~~~~~~~~~~~~--~--~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~-l~~~~~ 353 (430)
|+++++++....+.+. + ....+. .+ +.+..++.+..++|+.+.+ ++..++.+++.+++.+.|++ +.....
T Consensus 208 g~l~v~~~~~~~l~p~~~g~~~~~~~~-~G--T~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i 284 (364)
T PLN02651 208 GALYVRRRPRVRLEPLMSGGGQERGRR-SG--TENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRV 284 (364)
T ss_pred EEEEEcCCCCCCCCccccCCCccCCcc-CC--CccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 9999998765554331 0 001111 12 3355666666677776643 34556677777777777764 222222
Q ss_pred eee--E-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------CCEEEEeCC
Q psy14484 354 IIN--F-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------GNTVYLMPP 406 (430)
Q Consensus 354 ~~~--~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------~~~lR~~~~ 406 (430)
... . .....++.|.+. .- . ...+.+.|.+ |.++.+ .+.+|++++
T Consensus 285 ~~~~~~~~~~~~i~~~~~~-~~-~-----~~~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~ 355 (364)
T PLN02651 285 NGPRDPEKRYPGTLNLSFA-YV-E-----GESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVG 355 (364)
T ss_pred ECCCCcccCcCCEEEEEeC-CC-C-----HHHHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcC
Confidence 221 1 112345666554 21 1 2457777644 555421 258999999
Q ss_pred CCCCHHHHH
Q psy14484 407 YILNKNEIQ 415 (430)
Q Consensus 407 ~~~t~e~i~ 415 (430)
.++|++|||
T Consensus 356 ~~~t~~did 364 (364)
T PLN02651 356 RFTTEEEVD 364 (364)
T ss_pred CCCCHHHcC
Confidence 999999985
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-19 Score=172.91 Aligned_cols=302 Identities=9% Similarity=0.007 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHhhcCC--CCCeEEE--cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC
Q psy14484 74 LTHKPVIKLSEKLSSLTQY--KLGHCFY--GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~--~~~~v~~--~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
+..++++.+++++.+.... ..++|.. +.+|+.+..+++.+..... +++.|++.+|+|.++.......+.
T Consensus 92 G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~------pGd~Vlv~~P~y~~y~~~~~~~g~- 164 (423)
T PLN02397 92 GLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFY------PGSTIYIPNPTWGNHHNIFRDAGV- 164 (423)
T ss_pred CCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhC------CCCEEEEeCCCchhHHHHHHHcCC-
Confidence 3345556666665443210 1123321 4454445443333333221 567899999999988554444332
Q ss_pred ccchhhhhccCCCeeEeCC-C-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHH
Q psy14484 150 QSFKEIYTSLLNKTYIITT-P-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKL 227 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~ 227 (430)
..+.++. + +.+.. |++.+++.+..+..++.++++.. .+|++| ...+.+.+++
T Consensus 165 ------------~~~~v~l~~~~~~~~------------d~~~l~~~l~~~~~~~~~i~~~~-P~NPTG-~v~s~e~l~~ 218 (423)
T PLN02397 165 ------------PVRTYRYYDPKTRGL------------DFDGLLEDLKAAPDGSFVLLHAC-AHNPTG-VDPTPEQWEQ 218 (423)
T ss_pred ------------eEEEeecccCcCCcc------------CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHH
Confidence 2223332 1 11221 77888888765434567777776 889999 6667888999
Q ss_pred HHHHHHhcCCEEEEeccccCCCCccc---cccc-ccCCCCCc---eeeeecccC-CCccccEEEE--E-cHHHHHhhhcc
Q psy14484 228 VREICNNYNIHLIADEIAVGCGRTGK---FFAC-EHAEIWPD---FLCLSKGIT-GGYLPLSLVM--T-TDKIYNSIYYK 296 (430)
Q Consensus 228 l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~-~~~~~~~d---~~~~sK~l~-gG~~~ig~~~--~-~~~~~~~~~~~ 296 (430)
|.++|++||+++|.||+|.+|...+. .... .......+ +-+|||.++ .| +|+|+++ + ++++++.+..
T Consensus 219 i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G-~RvG~~v~~~~~~~~~~~~~~- 296 (423)
T PLN02397 219 ISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYG-ERVGALSVVCKSADVAVRVKS- 296 (423)
T ss_pred HHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCcc-ccceEEEEEeCCHHHHHHHHH-
Confidence 99999999999999999998864331 1011 11111122 337999998 47 8999984 4 4554433221
Q ss_pred CCcccccccCCCCCCHHHHHHHHHHHHHHh--------hcCHHHHHHHHHHHHHHHHHchhcCC-CeeeEeecceEEEEE
Q psy14484 297 NNINIFLHSHSYSGNPLACCAALATLEIFN--------KDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAFD 367 (430)
Q Consensus 297 ~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~g~~~~~~ 367 (430)
.-........++.+.+++.++.++|+.-. -++..+.++++.+.+.+.|+++ ..+ .+....++|.|+.|.
T Consensus 297 -~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~ 374 (423)
T PLN02397 297 -QLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFT 374 (423)
T ss_pred -HHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEec
Confidence 00001111223345566666665554210 1233456677777777777765 211 233445677777664
Q ss_pred EeecCCccchhHHHHHHHHHH-HCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 368 VIIEDPEQIETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
-. + ..++++|+ +.||.+.+.+ |+++. ..+++.+++++++|+++++
T Consensus 375 ~l-~---------~~~~~~Ll~~~~V~v~~~~---Ri~~~-~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 375 GL-N---------KEQVDRMTKEYHIYMTRDG---RISMA-GLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred CC-C---------HHHHHHHHHhCCEEECCCC---eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence 33 2 34777775 5599987544 88653 3889999999999999874
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-19 Score=164.02 Aligned_cols=345 Identities=15% Similarity=0.079 Sum_probs=211.9
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCC-CCC---HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-LTH---KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~---~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~ 109 (430)
--|+|..+ .|-.+|+|.+|+.+.+..+...+.+. +.. +..++.++.+++++++++.+|+||+++||++++
T Consensus 44 ~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nl 117 (428)
T KOG1549|consen 44 PVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNL 117 (428)
T ss_pred cEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHH
Confidence 46788544 45579999999999887653222212 222 335778889999999999999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++........ +.++.|+.....|...........+ ...++.++|++.++.. |++
T Consensus 118 vl~~v~~~~~~----~~~k~iitl~~eH~~v~~s~~~l~~---------~g~~Vt~lpv~~~~~~------------d~~ 172 (428)
T KOG1549|consen 118 VLKGVARFFGD----KTKKHIITLQTEHPCVLDSCRALQE---------EGLEVTYLPVEDSGLV------------DIS 172 (428)
T ss_pred HHHHhhccccc----cccceEEEecccCcchhHHHHHHHh---------cCeEEEEeccCccccc------------cHH
Confidence 99966543211 2333455555666654332222211 1245567777744433 899
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~ 269 (430)
.+++.|+ .++.+|.+.. |+++.|..+| +++|.++|++.++.+++|.+|+ +|.. ..+.-++.+|++++
T Consensus 173 ~~~~~i~---~~T~lv~I~~-Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-vG~i----~vDV~eln~D~~s~ 239 (428)
T KOG1549|consen 173 KLREAIR---SKTRLVSIMH-VNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-VGKI----PVDVQELNADFLSI 239 (428)
T ss_pred HHHHhcC---CCceEEEEEe-cccCcccccc----HHHHHHHhCcCCcEEEeehhhh-cCCc----cccHHHcCchheee
Confidence 9999996 6899999999 9999999999 9999999999999999999997 6543 34445667899988
Q ss_pred e--cccCCCccccEEEEEcHHH---H--HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHH
Q psy14484 270 S--KGITGGYLPLSLVMTTDKI---Y--NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 340 (430)
Q Consensus 270 s--K~l~gG~~~ig~~~~~~~~---~--~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~ 340 (430)
+ |.++. -++|++++++.. . ..+..++..+.+.-+.--.+..+...+| .+++.. ......+.++...
T Consensus 240 s~HK~ygp--~~iGaLYvr~~~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA---~e~~~~~~~~~~~~~~~~~~~ 314 (428)
T KOG1549|consen 240 SAHKIYGP--PGIGALYVRRKRPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSA---AEFVNKEMAYDEAIIKRLSEK 314 (428)
T ss_pred ecccccCC--CcceEEEEccCCCcccccCcccCCccccccccCCcCchhhhhhHHH---HHHHHhhcchhHHHHHHHHHH
Confidence 7 76665 349999999621 1 1122223334433322222233333333 343332 2223344445555
Q ss_pred HHHHHHc-hhc--CCCee-eEeecceEEEEEEeecCC--------------ccchhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 341 ITKALTS-LIT--HPKII-NFRQKGMIWAFDVIIEDP--------------EQIETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 341 l~~~l~~-l~~--~~~~~-~~~~~g~~~~~~~~~~~~--------------~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
+..++.. +.. ..+.. ...+....+.+... .+. ..+.....+..-.+++.|+-.......+|
T Consensus 315 ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iR 393 (428)
T KOG1549|consen 315 LLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYV-EGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIR 393 (428)
T ss_pred HHHHHhhhCchhhccCCcccccccceeeecccc-cCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeE
Confidence 5555532 211 11111 11111222222211 000 00000001233345666775555568999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|+....++++|++.+++.+++.++..
T Consensus 394 is~G~y~t~~di~~~~~~i~~~v~~~ 419 (428)
T KOG1549|consen 394 ISIGRYTTEEDIDYLVDAIKKLVSLL 419 (428)
T ss_pred EeeeeeCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887654
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-18 Score=168.75 Aligned_cols=336 Identities=12% Similarity=0.084 Sum_probs=198.4
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC--------CCHHHHHHHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL--------THKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~--------~~~~~~~l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
+.|+|..+. +..++.+.+++.+++........... ..+..+++++.++++++.+++++++++||++
T Consensus 4 ~iyld~a~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~ 77 (404)
T PRK14012 4 PIYLDYSAT------TPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATE 77 (404)
T ss_pred eEEecCcCC------CCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHH
Confidence 467885543 34678999999887751111111110 1134567888999999877788999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.+++++.... . ++++.|++.+..|+........+ .........++.+.+...
T Consensus 78 al~~~l~~l~~~~--~--~~gd~Vi~~~~~~~s~~~~~~~~----------~~~g~~~~~v~~~~~g~~----------- 132 (404)
T PRK14012 78 SDNLAIKGAAHFY--Q--KKGKHIITSKTEHKAVLDTCRQL----------EREGFEVTYLDPQSNGII----------- 132 (404)
T ss_pred HHHHHHHHHHHhh--c--CCCCEEEEecCccHHHHHHHHHH----------HhCCCEEEEEccCCCCcC-----------
Confidence 9999988765311 0 14567777666654332111110 001123344544432222
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|+++|+++++ ++++++++.. +++++|.+.+ +++|.++|+++|+++|+|++|+ ++... ++.....+|
T Consensus 133 -d~~~l~~~i~---~~t~lv~~~~-~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~----~~~~~~~~D 198 (404)
T PRK14012 133 -DLEKLEAAMR---DDTILVSIMH-VNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP----IDLSKLKVD 198 (404)
T ss_pred -CHHHHHHhcC---CCCEEEEEEC-cCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc----cCcccCCCC
Confidence 7899999885 4678888888 9999998887 9999999999999999999997 43321 122234589
Q ss_pred eeeee--cccCCCccccEEEEEcHHHHHhhhcc--CC--cccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHH
Q psy14484 266 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NN--INIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQD 337 (430)
Q Consensus 266 ~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~~--~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~ 337 (430)
++++| |.++. .++|+++++++....+.+. +. .+.+ ..+|. +.....+..++++.++ .++..++.+++
T Consensus 199 ~~~~s~~K~~gp--~g~G~l~~~~~~~~~~~~~~~g~~~~~~~-~~gt~--~~~~~~~l~~al~~~~~~~~~~~~~~~~l 273 (404)
T PRK14012 199 LMSFSAHKIYGP--KGIGALYVRRKPRVRLEAQMHGGGHERGM-RSGTL--PTHQIVGMGEAARIAKEEMATENERIRAL 273 (404)
T ss_pred EEEEehhhccCC--CceEEEEEecCCCCCCCceecCCCccCCc-cCCCc--CHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88887 96653 2588998887643322210 00 0011 11222 2333333334444332 23355677778
Q ss_pred HHHHHHHHHchhcCCCeee-E-eecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcE----Eee--------------
Q psy14484 338 MKKITKALTSLITHPKIIN-F-RQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELL----LRP-------------- 396 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~-~-~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~----~~~-------------- 396 (430)
.+++.+.|+++........ . +..+. .+.+... + . ..+...|.+.+|- +.+
T Consensus 274 ~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~-~----~----~~~~~~l~~~~i~~g~~~~~~~~~~~~~~~~~~~ 344 (404)
T PRK14012 274 RDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYV-E----G----ESLIMALKDLAVSSGSACTSASLEPSYVLRALGL 344 (404)
T ss_pred HHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCc-C----H----HHHHHhCCCeEEEchhhhCCCCCCCCHHHHHcCC
Confidence 8888888776522111111 0 11111 2222222 1 1 2344444322211 111
Q ss_pred ----cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 ----IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 ----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..+.+|++++..+|++|++.+++.|+++++++
T Consensus 345 ~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 345 NDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred ChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 13689999999999999999999999987653
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=168.39 Aligned_cols=307 Identities=8% Similarity=0.085 Sum_probs=187.4
Q ss_pred CCCHHHHHHHHHHHhhcC-C---CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC
Q psy14484 74 LTHKPVIKLSEKLSSLTQ-Y---KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~-~---~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
+..+++..+++.+.+..+ . ..++|++|+|+++++..+++++.. +++.|++.+|+|+.+........+
T Consensus 45 G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~--------~gd~Vlv~~P~y~~~~~~~~~~~g- 115 (388)
T PRK08637 45 GIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVD--------QGDTVLLPDHNWGNYKLTFNTRRG- 115 (388)
T ss_pred CCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHhcC-
Confidence 333555666666654322 1 225789999999999999988765 668899999999887543221111
Q ss_pred ccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHH
Q psy14484 150 QSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 227 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~ 227 (430)
.+.+.++.. ++.+. |++++++.+++. .+...++++.. ++|++| ...+++.+++
T Consensus 116 -----------~~vv~v~~~~~~~~~------------d~~~l~~~~~~~~~~~~~~~~~~~-P~NPTG-~~~s~~~~~~ 170 (388)
T PRK08637 116 -----------AEIVTYPIFDEDGGF------------DTDALKEALQAAYNKGKVIVILNF-PNNPTG-YTPTEKEATA 170 (388)
T ss_pred -----------CEEEEecccCCCCcC------------CHHHHHHHHHhhccCCCEEEEEeC-CCCCCC-CCCCHHHHHH
Confidence 122344432 21222 789998888622 23344455554 688888 7788888999
Q ss_pred HHHHHHh-----cCCEEEEeccccCCCCccccc-c-c-ccCCCCCce--e---eeecccCC-CccccEEEEEc------H
Q psy14484 228 VREICNN-----YNIHLIADEIAVGCGRTGKFF-A-C-EHAEIWPDF--L---CLSKGITG-GYLPLSLVMTT------D 287 (430)
Q Consensus 228 l~~l~~~-----~gi~li~DEv~~g~g~~g~~~-~-~-~~~~~~~d~--~---~~sK~l~g-G~~~ig~~~~~------~ 287 (430)
|.++|++ |++++|+||+|.++...+... . + ...+...++ + ++||.++. | +|+|+++.+ +
T Consensus 171 l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pG-lRlG~~~~~~~~~~~~ 249 (388)
T PRK08637 171 IVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWG-FRVGFITFGTKAGSSQ 249 (388)
T ss_pred HHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcc-cceEEEEEccccCCcH
Confidence 9998875 999999999999885554321 1 1 111222332 2 68997554 6 899999854 5
Q ss_pred HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-------HHHHHchhcCCCeeeEeec
Q psy14484 288 KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI-------TKALTSLITHPKIINFRQK 360 (430)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l-------~~~l~~l~~~~~~~~~~~~ 360 (430)
++.+.+.. ..........++.+.+++.++.++|+ ++.+.++++++...+ .+.|++..-.+.+...++.
T Consensus 250 ~l~~~~~~--~~~~~~~~~~~~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~ 324 (388)
T PRK08637 250 TVKEALEK--KVKGLIRSNISNGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFN 324 (388)
T ss_pred HHHHHHHH--HHHHHhhcccCCCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccc
Confidence 66666542 00000111234567788887777764 233444443333333 3333322000122233434
Q ss_pred -ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 361 -GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 361 -g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|.++++.+. . .. +.++++.|+ ++||.+.+.+ +++|++++. .+++++++++++|.+++.++
T Consensus 325 ~g~~~~~~l~-~----~~--~~~l~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 325 SGYFMCLKLK-G----VD--AEELRVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ceEEEEecCC-h----HH--HHHHHHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 455555554 2 11 367888885 6799877643 689998774 78999999999999998754
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-18 Score=162.03 Aligned_cols=326 Identities=15% Similarity=0.134 Sum_probs=190.6
Q ss_pred CEEEecccccccccCCCC--CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
+.+|+..... ..||-+ +|++.++++++++.+ ....+...++++.+++.+ +.+++++++|+++|+..++
T Consensus 8 ~~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~------~~~~~~~~~~~~~~a~~~--g~~~~~~~~g~t~al~~al 77 (363)
T TIGR01437 8 KKVINASGKM--TILGVSTVSDEVADAQKRGAQNY------FEIKELVNKTGEYIANLL--GVEDAVIVSSASAGIAQSV 77 (363)
T ss_pred ceEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhh--CCCeEEEEcCHHHHHHHHH
Confidence 3455543332 566654 889999999987642 234567788999999998 4568999999999999999
Q ss_pred HHHHHhhhhcCC-----------CCCcEEEEEcCCCCCcc---hhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCC
Q psy14484 112 KMSFHYWYNKGF-----------LNKKKFICLQNSYHGET---LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG 177 (430)
Q Consensus 112 ~~~~~~~~~~g~-----------~~~~~vl~~~~~yhg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
+.+... |+ ..++.||+..+.|..+. .......+ ...+++... ...
T Consensus 78 ~al~~~----Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g------------~~~v~v~~~--~~~--- 136 (363)
T TIGR01437 78 AAVITR----GNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGG------------GKVVEAGYA--NEC--- 136 (363)
T ss_pred HHHhcC----CCcchhhcccccccccceEEEECccchhcCCchHHHHHhcC------------CeEEEEcCC--CCC---
Confidence 987641 10 01236777776665431 11111111 111233221 111
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCeEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc
Q psy14484 178 NSANEIARCAIFDLEILLKKNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256 (430)
Q Consensus 178 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~ 256 (430)
|++++++++. +++++++ ++. .++.+|...+ +++|.++|++||+++|+|++|+ . ... .
T Consensus 137 ---------d~~~le~ai~---~~t~ai~~v~~-~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~--~ 194 (363)
T TIGR01437 137 ---------SAEQLEAAIT---EKTAAILYIKS-HHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ--K 194 (363)
T ss_pred ---------CHHHHHHhcC---hhceEEEEEec-CCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH--H
Confidence 8899999996 4555554 444 4556676666 8999999999999999999996 2 111 0
Q ss_pred cccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHH
Q psy14484 257 CEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQ 332 (430)
Q Consensus 257 ~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~ 332 (430)
.... ..|++++| |.++| ++.|++++++++++.+..... . ....+......+++..++++.+.. .+..+
T Consensus 195 ~~~~--g~D~~~~S~~K~l~g--p~~G~l~~~~~~i~~~~~~~~--~--~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~ 266 (363)
T TIGR01437 195 YYRL--GADLVIYSGAKAIEG--PTSGLVLGKKKYIEWVKLQSK--G--IGRAMKVGKENILGLTAALEQYLSTGKESGA 266 (363)
T ss_pred HHHc--CCCEEEEeCCcccCC--CceEEEEEcHHHHHHHHhccC--C--CcceeccCHHHHHHHHHHHHHHHccCcccHH
Confidence 1112 35777665 88865 468998888887766533000 0 000111111222333334443322 23344
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecce---EEEEEEeecCCccchhHHHHHHHHHHHCC--cEEee---cCCEEEEe
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGM---IWAFDVIIEDPEQIETFSKKFFVAALKNE--LLLRP---IGNTVYLM 404 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~a~~~~~~l~~~G--v~~~~---~~~~lR~~ 404 (430)
...+..++++++|+++............+. ...+.+. ....... ..++.+.|.++| |..++ ..+.+|+.
T Consensus 267 ~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~-~~~~g~~--~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~ 343 (363)
T TIGR01437 267 EMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFD-ESELGMT--AADVVQALRQGEPAIYTRGYKANEGIIEID 343 (363)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEe-ccCCCCC--HHHHHHHHhcCCCCEEEeeeeecCCeEEEE
Confidence 444456678888876632211111111111 1122232 1100011 367999998777 66664 24688998
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~ 424 (430)
+. .++++|++.++++|++.
T Consensus 344 ~~-~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 344 PR-SVTGGQLDIIVERIREI 362 (363)
T ss_pred ee-cCCHHHHHHHHHHHHHh
Confidence 87 46799999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-19 Score=171.18 Aligned_cols=249 Identities=13% Similarity=0.091 Sum_probs=165.9
Q ss_pred CCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 74 LTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
+..++++.+++++.+..+ .++++|++|+|+++++..+++++..- +++.|++++|+|..+.......+.
T Consensus 108 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~-------pGd~Vli~~P~Y~~y~~~~~~~g~--- 177 (407)
T PLN02368 108 GLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRG-------EKDGVLVPVPQYPLYSATISLLGG--- 177 (407)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCC-------CCCEEEEeCCCCccHHHHHHHcCC---
Confidence 334677778777776544 46789999999999999999877521 578899999999988655444332
Q ss_pred chhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
....++... .+.. |+++|++.++.. ..+++++++.. ++|++| ...+.+.++
T Consensus 178 ----------~~v~v~~~~~~~~~~------------d~~~le~~i~~~~~~~~~~k~l~l~n-P~NPTG-~v~s~e~l~ 233 (407)
T PLN02368 178 ----------TLVPYYLEESENWGL------------DVNNLRQSVAQARSKGITVRAMVIIN-PGNPTG-QCLSEANLR 233 (407)
T ss_pred ----------EEEEEecccccCCCC------------CHHHHHHHHHHHhhcCCCeEEEEEEC-CCCCCC-ccCCHHHHH
Confidence 112333221 1122 789999888642 11567555555 677888 667889999
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCccc-cc-c-cccC-CC------CCcee---eeecccC--CCccccEEEEE---cHH
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGK-FF-A-CEHA-EI------WPDFL---CLSKGIT--GGYLPLSLVMT---TDK 288 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~-~~-~-~~~~-~~------~~d~~---~~sK~l~--gG~~~ig~~~~---~~~ 288 (430)
+|.++|++||+++|.||+|..+.+.+. .+ . .+.. +. .+.++ +|||.+. .| +|+|++++ +++
T Consensus 234 ~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~G-lRiGy~i~~~~~~~ 312 (407)
T PLN02368 234 EILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPK 312 (407)
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCc-cceEEEEEeCCCHH
Confidence 999999999999999999998755442 11 1 1110 11 12333 6899984 46 89999984 788
Q ss_pred HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----------hh-cCHHHHHHHHHHHHHHHHHchhcCCCeee
Q psy14484 289 IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----------NK-DNILQRISQDMKKITKALTSLITHPKIIN 356 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-----------~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 356 (430)
+++.+.. . ...+++.+.+++.++.++|+.- ++ .++.+.++++.+.+.+.|+++ +++..
T Consensus 313 li~~~~~------~-~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~---~g~~~ 382 (407)
T PLN02368 313 TVEEIYK------V-ASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC---KNVVC 382 (407)
T ss_pred HHHHHHH------H-hcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEe
Confidence 8887765 1 2235667778888888877411 10 123445566666666666654 55556
Q ss_pred EeecceEEEEE
Q psy14484 357 FRQKGMIWAFD 367 (430)
Q Consensus 357 ~~~~g~~~~~~ 367 (430)
..++|.|+.|.
T Consensus 383 ~~P~Gafy~~~ 393 (407)
T PLN02368 383 NFTEGAMYSFP 393 (407)
T ss_pred CCCCeeeEecc
Confidence 67888888764
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-18 Score=165.39 Aligned_cols=333 Identities=11% Similarity=0.090 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEc
Q psy14484 54 YINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133 (430)
Q Consensus 54 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~ 133 (430)
.+.+++.+++..... .+.......+|++.+++.+ +.+++++|+||++|+..++.++.. +++ |+...
T Consensus 58 a~~~a~~~a~~~g~~---~Y~~~~g~~~Lreaia~~~--~~~~vv~t~ggt~A~~~~~~all~--------pGD-Vii~~ 123 (460)
T PRK13238 58 AMSDRQWAAMMRGDE---AYAGSRSYYRLEDAVKDIF--GYPYTIPTHQGRAAEQILFPVLIK--------KGD-VVPSN 123 (460)
T ss_pred hhhHHHHHHHHhCCc---ccCCCCCHHHHHHHHHHHh--CCCcEEECCCHHHHHHHHHHHhCC--------CCC-EEccC
Confidence 467777777755332 1233445667888888888 557899999999999999887754 445 78777
Q ss_pred CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH-HHHHHHHHHHHHhCC-CCeEEEEEcccc
Q psy14484 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RCAIFDLEILLKKNH-NKIAAIIIEPLV 211 (430)
Q Consensus 134 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~-~~~~~vi~ep~v 211 (430)
+.|..+.......+.. .+.++.+..... ...+.+. .-|+++|++.+.+++ +++++|+++. +
T Consensus 124 p~~~~~~~~i~~~G~~-------------~v~v~~~~~~~~---~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~-p 186 (460)
T PRK13238 124 YHFDTTRAHIELNGAT-------------AVDLVIDEALDT---GSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTI-T 186 (460)
T ss_pred CcccchHHHHHHcCCE-------------EEEEeccccccc---cccccccCCcCHHHHHHHHhhcCCCceeEEEEec-C
Confidence 7776554322222221 123332210000 0000000 028899999998642 4789999988 8
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----CCCc---cc-ccccc----cCCCCCceeeeec-ccCCCcc
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----CGRT---GK-FFACE----HAEIWPDFLCLSK-GITGGYL 278 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g----~g~~---g~-~~~~~----~~~~~~d~~~~sK-~l~gG~~ 278 (430)
+|++|..+.+.+.+++|.++|++||+++|.|+++.. |... |. ..... ...-..|+.++|- -.+. .
T Consensus 187 ~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~--~ 264 (460)
T PRK13238 187 NNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM--V 264 (460)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCC--C
Confidence 888776788899999999999999999999997741 1110 10 00000 0011257777762 1121 2
Q ss_pred ccE-EEEEc-HHHHHhhhccCCcccccc-cCCCCCCHHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 279 PLS-LVMTT-DKIYNSIYYKNNINIFLH-SHSYSGNPLACC-AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 279 ~ig-~~~~~-~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~-aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
+.| +++++ +++.+.+.. .....+ ..|+++.+..+. |...+|+...++++.....+..++|.+.|++. +++.+
T Consensus 265 ~~GG~i~~~d~~l~~~~~~---~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~ 340 (460)
T PRK13238 265 NIGGLLCFRDEDLFTECRT---LCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEA-GVPIQ 340 (460)
T ss_pred cceeEEEcChHHHHHHhhh---cccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHC-CCCeE
Confidence 444 45555 467776654 111112 237777666533 33345553334455555555678888888775 44433
Q ss_pred eeEeecceEEEEEEeecCC--ccchhH-HHHHHHHHH-HCCcEEeec------------------CCEEEEeCCC-CCCH
Q psy14484 355 INFRQKGMIWAFDVIIEDP--EQIETF-SKKFFVAAL-KNELLLRPI------------------GNTVYLMPPY-ILNK 411 (430)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~--~~~~~~-a~~~~~~l~-~~Gv~~~~~------------------~~~lR~~~~~-~~t~ 411 (430)
. +..|.++.++.. .-. .....+ +..++.+|. +.||.+.|. .+.+||+++. ..|+
T Consensus 341 ~--p~Gg~~v~~d~~-~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~ 417 (460)
T PRK13238 341 T--PAGGHAVFVDAG-KFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQ 417 (460)
T ss_pred c--cCCceEEEEEch-hcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCH
Confidence 2 222344444443 210 000111 356777765 559988762 1578998885 3499
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTFN 426 (430)
Q Consensus 412 e~i~~~~~~l~~~l~ 426 (430)
++++.+.++|++..+
T Consensus 418 ~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 418 SHMDYVAEALKAVKE 432 (460)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-19 Score=172.03 Aligned_cols=334 Identities=13% Similarity=0.062 Sum_probs=187.2
Q ss_pred CCCCHH-HHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh-hcC--C-C--CCeEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 49 GHSNSY-INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS-LTQ--Y-K--LGHCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 49 G~~~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~--~-~--~~~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
|...|+ |.+ +.+.+. ..++..+.+..++.+++++.+.+ ... . . .++|++|+|+++|+..++.++......
T Consensus 111 ~~~~~~~v~e-~~~~~~-~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll- 187 (527)
T PRK09275 111 GFDADEFVYE-LVDGII-GDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL- 187 (527)
T ss_pred CCCCCHHHHH-HHHHHh-cCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-
Confidence 444444 445 555553 22333444555677777774443 221 1 1 248999999999999998863210000
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC----CCCCCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP----DSRNINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
.+++.|++++|+|..+......... +...++++ +.++. |+++++++++
T Consensus 188 --~pGD~Vlv~~P~y~~Y~~~~~l~g~-------------~~~~v~v~~~~~~~f~~------------d~~~l~~~~~- 239 (527)
T PRK09275 188 --KAGDKIALMTPIFTPYLEIPELPRY-------------DLEVVHINADEENEWQY------------PDSELEKLRD- 239 (527)
T ss_pred --CCCCEEEEeCCChHHHHHHHHHcCC-------------CeEEEEeecCcccCCCC------------CHHHHHhhcC-
Confidence 1678999999999987543322211 11222222 11222 7788888764
Q ss_pred CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccC-CCCCceeeeecccC
Q psy14484 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLSKGIT 274 (430)
Q Consensus 198 ~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~~sK~l~ 274 (430)
++++++++.. ++|++| ...+++.+++|.++|++ +++++|.||+|..|... ........ ....-+.+|||.++
T Consensus 240 --~~tkai~l~n-P~NPTG-~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-~~s~~~~~~~~~I~v~SfSK~f~ 314 (527)
T PRK09275 240 --PSIKALFLVN-PSNPPS-VAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDD-FRSLFAVLPYNTILVYSFSKYFG 314 (527)
T ss_pred --CCCCEEEEeC-CcCCcC-CCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhccc-ccCHHHhCCCCEEEEeehhhhcc
Confidence 5677777666 778888 66788999999999964 59999999999977421 11111111 11122347999986
Q ss_pred -CCccccEEEEEcHH-----HHHhhhcc--------------------------CCcccccccCCCCCCHHHHHH-H---
Q psy14484 275 -GGYLPLSLVMTTDK-----IYNSIYYK--------------------------NNINIFLHSHSYSGNPLACCA-A--- 318 (430)
Q Consensus 275 -gG~~~ig~~~~~~~-----~~~~~~~~--------------------------~~~~~~~~~~t~~~~~~~~~a-a--- 318 (430)
.| +|+|+++++++ +++.+... ...+.+....|.+.+.+.+.+ +
T Consensus 315 mtG-~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~ 393 (527)
T PRK09275 315 ATG-WRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFS 393 (527)
T ss_pred CcH-hHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHH
Confidence 46 89999999876 33222000 001122333455556555553 2
Q ss_pred -HHHHHHHhhcCHH----HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCc--cchhH---------HH
Q psy14484 319 -LATLEIFNKDNIL----QRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPE--QIETF---------SK 381 (430)
Q Consensus 319 -~~~l~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~--~~~~~---------a~ 381 (430)
.+.|+. .+.+. +.++++.+.+.+.| +.+ +...++.|.|+.+ ++. .-.. ....+ ..
T Consensus 394 ~~all~~--~~~~~~~~~~~~~~Rr~~l~~~L----g~~-~~~~~p~g~fY~~~di~-~~~~~~~g~~f~~~l~~~~~~~ 465 (527)
T PRK09275 394 LFALLDE--EDAYKKAMKDIIRRRYKALYEGL----GLP-EPEDPNNAAYYTLIDLE-EWAEKNYGKEFADYLKKNYSPV 465 (527)
T ss_pred HHHHHhC--chHHHHHHHHHHHHHHHHHHHHc----CCC-CcCCCCCeeEEEEEEhH-HhhhhccCchhhhhhhccCCHH
Confidence 222321 12222 22333333333332 111 1123455666554 332 1000 00000 24
Q ss_pred HHHHHHHHC-CcEEeecC------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 382 KFFVAALKN-ELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 382 ~~~~~l~~~-Gv~~~~~~------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++.+|.++ ||.+.|+. +++|+++. ..+++++.++.++|++.+++.
T Consensus 466 ~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a-~~~~~~~~~~~~rl~~~l~~y 518 (527)
T PRK09275 466 DLLFRLAEETGVVLLPGGGFGGPEWSVRVSLA-NLNEEDYAKIGKAIRKLLDEY 518 (527)
T ss_pred HHHHHHHhcCCEEEeCchhhCCCCCeEEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 677777654 99998862 47888653 358899999999999988753
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-18 Score=163.97 Aligned_cols=321 Identities=12% Similarity=0.051 Sum_probs=190.2
Q ss_pred CCHHHHHHHHHHH-hhcccc---ccCCCCCHHHHHHHH----HHHhhcCCCCCeE-EEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 51 SNSYINKALKNQL-NKLEHV---MLSNLTHKPVIKLSE----KLSSLTQYKLGHC-FYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~-~~~~~~---~~~~~~~~~~~~l~~----~l~~~~~~~~~~v-~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
-+|++++++...+ .+++.. ......++...++++ .++++++ .+.+ ++++||+.|+..++.++..
T Consensus 40 ~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g--~~~alv~~~SG~~A~~~~l~al~~----- 112 (416)
T PRK13034 40 TSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG--CDYANVQPHSGSQANGAVYLALLK----- 112 (416)
T ss_pred CCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC--CCceEEecCCcHHHHHHHHHHhcC-----
Confidence 3899999999985 655432 111112567778887 9999994 4566 4568999999999988754
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
+++.|++.+.++.+........+ +. ........++.+... ...|++++++.++. .+
T Consensus 113 ---~GD~Vl~~~~~~~~~~~~g~~~~----~~------~~~~~~~~~~~~~~~---------~~~d~~~le~~l~~--~~ 168 (416)
T PRK13034 113 ---PGDTILGMSLSHGGHLTHGAKVS----LS------GKWYNAVQYGVDRLT---------GLIDYDEVEELAKE--HK 168 (416)
T ss_pred ---CCCEEEEcCccceeeeecCCcce----ec------cceeeeEEccccccc---------CCcCHHHHHHHHhh--cC
Confidence 66788877766644221111110 00 000000111110000 01288899988864 24
Q ss_pred eEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcc
Q psy14484 202 IAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYL 278 (430)
Q Consensus 202 ~~~vi~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~ 278 (430)
+++|++ ++ ++ |...+ +.+|.++|++||+++|+|++|+ +|..+........+ ..|++ +++|+++|+
T Consensus 169 ~klVi~~~~-~~---g~~~d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~~~~~~~-~~Di~~~s~~K~l~g~-- 236 (416)
T PRK13034 169 PKLIIAGFS-AY---PRELD----FARFREIADEVGALLMVDMAHI-AGLVAAGEHPNPFP-HAHVVTTTTHKTLRGP-- 236 (416)
T ss_pred CeEEEECCC-cc---ccccC----HHHHHHHHHHcCCEEEEeCccc-ccCcccCCCCCCCC-CceEEEEeCcccCCCC--
Confidence 577777 44 43 43445 8899999999999999999987 44443221111112 35766 466999764
Q ss_pred ccEEEEEcHH-HHHhhhccCCcccccccC-CCCCCHHHHHHHH-HHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcCCC
Q psy14484 279 PLSLVMTTDK-IYNSIYYKNNINIFLHSH-SYSGNPLACCAAL-ATLEIFNK--DNILQRISQDMKKITKALTSLITHPK 353 (430)
Q Consensus 279 ~ig~~~~~~~-~~~~~~~~~~~~~~~~~~-t~~~~~~~~~aa~-~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~ 353 (430)
.-|+++++++ +.+.++. ....+ +....+...+++. +.++.++. +++.+++.++.++|+++|+++ +.+.
T Consensus 237 ~GG~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~ 309 (416)
T PRK13034 237 RGGMILTNDEEIAKKINS------AVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDL 309 (416)
T ss_pred CCeEEEECcHHHHHHHHh------hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEe
Confidence 2366677654 4343432 11111 1112233333333 33444322 345788999999999999876 3332
Q ss_pred eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCC----CCCHHHHHHHH
Q psy14484 354 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPY----ILNKNEIQHMT 418 (430)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~----~~t~e~i~~~~ 418 (430)
... .....+..+.+. +... . ...+.+.|.+.||.+.+. ...+|++++. .++++|+++++
T Consensus 310 ~~~-~~~t~i~~v~~~-~~~~--~--~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~ 383 (416)
T PRK13034 310 VSG-GTDNHLLLVDLR-PKGL--S--GKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIA 383 (416)
T ss_pred ccC-CCCCcEEEEEcC-CCCC--C--HHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHH
Confidence 211 123445555554 3221 1 245667888899998741 2479999888 77899999999
Q ss_pred HHHHHHHHH
Q psy14484 419 SAIFQTFNE 427 (430)
Q Consensus 419 ~~l~~~l~~ 427 (430)
+.|++++.+
T Consensus 384 ~~l~~~~~~ 392 (416)
T PRK13034 384 NWILDVLDD 392 (416)
T ss_pred HHHHHHHhc
Confidence 999988763
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=171.27 Aligned_cols=337 Identities=12% Similarity=0.046 Sum_probs=183.6
Q ss_pred CCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHH-HHHhhcC---CCCC--eEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 48 FGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE-KLSSLTQ---YKLG--HCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 48 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~---~~~~--~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
.+...|+++.++.+.+.. .++..+....+..+++.+ .+.+... ...+ +|++|+|+++|+..++.++......
T Consensus 104 p~~~~~~~~~~~~~~~~~-~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll- 181 (521)
T TIGR03801 104 LGFDPDAFLYEMCDGIIG-DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL- 181 (521)
T ss_pred CCCCCCHHHHHHHHHhhc-CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC-
Confidence 345566777777766532 222223344455556554 4444322 1233 8999999999999988763210000
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-------CCCCCCCChhHHHHHHHHHHHHH
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-------RNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
.+++.|++.+|+|..+......... ....+.++.+.. ++. |.++++++
T Consensus 182 --~pGD~Vlv~~P~y~~y~~~~~l~~~-----------g~~vv~i~~~~~~~~g~~~~~~------------d~~~l~~~ 236 (521)
T TIGR03801 182 --KKGDKIALMTPIFTPYLEIPELPRY-----------DFEVVRIKADEMTEDGTHTWQY------------PDKELEKL 236 (521)
T ss_pred --CCCCEEEEeCCCcHHHHHHHHHhcC-----------CcEEEEeecccccccccccCCC------------CHHHHHHh
Confidence 1678999999999887443222110 111122222110 111 67888876
Q ss_pred HHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCCCCcccccccccC-CCCCceeeeec
Q psy14484 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLSK 271 (430)
Q Consensus 195 l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~~sK 271 (430)
++ ++++++++.. ++|++| ...+.+.+++|.++|++| ++++|.||+|..|... ........ ....-+.+|||
T Consensus 237 ~~---~~~kai~l~n-P~NPTG-~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~-~~sl~~~~~~~vI~v~SfSK 310 (521)
T TIGR03801 237 RD---PSIKALFVVN-PSNPPS-VAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDD-FRSLFAELPYNTIGVYSFSK 310 (521)
T ss_pred cC---CCCcEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhccc-ccchhhhCCCCEEEEEcchh
Confidence 64 4677777655 678888 567788899999999987 9999999999877431 11111111 11112347999
Q ss_pred ccC-CCccccEEEEEcHH-----HHHh--------hhcc------------------CCcccccccCCCCCCHHHHH---
Q psy14484 272 GIT-GGYLPLSLVMTTDK-----IYNS--------IYYK------------------NNINIFLHSHSYSGNPLACC--- 316 (430)
Q Consensus 272 ~l~-gG~~~ig~~~~~~~-----~~~~--------~~~~------------------~~~~~~~~~~t~~~~~~~~~--- 316 (430)
.++ .| +|+|+++++++ +++. +... ...+.+....|.+.+.+.+.
T Consensus 311 ~fg~~G-~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~a 389 (521)
T TIGR03801 311 YFGATG-WRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMA 389 (521)
T ss_pred hccCch-hhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHH
Confidence 986 46 89999999864 2211 1000 00011222234444444333
Q ss_pred --HHHHHHHHHhhcCHHHHH----HHHHHHHHHHHHchhcCCCeeeEeecceEEE-EEEeecCCc--cchhH--------
Q psy14484 317 --AALATLEIFNKDNILQRI----SQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPE--QIETF-------- 379 (430)
Q Consensus 317 --aa~~~l~~~~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~--~~~~~-------- 379 (430)
++.+.++. .+.+.+.. +++.+.+.+.| +.+ +...++.|.++. +++. .-.. ...+|
T Consensus 390 l~a~~all~~--~~~y~~~~~~~~~~R~~~l~~~L----g~~-~~~~~~~g~~Y~~~di~-~~~~~~~~~~f~~~l~~~~ 461 (521)
T TIGR03801 390 LFSLFALMDK--ENAYKAETKDICRRREKLLFRGL----GLP-LQEDPNDVAYYTLIDLE-EWAEKNYGEEFSSYLKKNY 461 (521)
T ss_pred HHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhc----CCC-CcCCCCCeEEEEEeehH-HHHHHhcchHHHHHHhccC
Confidence 23333331 12233322 33332332222 111 112334555544 4443 2100 00011
Q ss_pred -HHHHHHHHHH-CCcEEeecC------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 380 -SKKFFVAALK-NELLLRPIG------NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 380 -a~~~~~~l~~-~Gv~~~~~~------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
..+++.+|.+ .||.+.|+. +++|++++ ..+++++.++.++|++.+++
T Consensus 462 ~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla-~l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 462 SPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLA-NLNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred CHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEec-CCCHHHHHHHHHHHHHHHHH
Confidence 2457777664 499999862 46888653 36889999999999998865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-18 Score=162.02 Aligned_cols=291 Identities=13% Similarity=0.034 Sum_probs=174.6
Q ss_pred CCCHHHHHHHHHHHhhcCCC--CCeEEEcCCchHHHHHHHHHHHHhhhhc----C-CCCCcEEEEEcCCCCCcchhhhcc
Q psy14484 74 LTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYNK----G-FLNKKKFICLQNSYHGETLGALAV 146 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~--~~~v~~~~sgteA~~~al~~~~~~~~~~----g-~~~~~~vl~~~~~yhg~~~~~~~~ 146 (430)
...+..++++++++++++.+ .++++||+||++|+..++++++.....+ + .++++.+|+.+..+|.........
T Consensus 35 ~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~ 114 (345)
T cd06450 35 AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY 114 (345)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHH
Confidence 33466778888888888753 3479999999999999999887531110 0 012344556666666553222221
Q ss_pred CCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChH
Q psy14484 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSI 223 (430)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~ 223 (430)
. ......++.+..... |+++|++++.+. ..++.++++.. +++++|...+
T Consensus 115 ~------------g~~~~~v~~~~~~~~------------d~~~l~~~i~~~~~~~~~~~~v~~~~-~~~~tG~~~~--- 166 (345)
T cd06450 115 L------------DVKVRLVPVDEDGRM------------DPEALEAAIDEDKAEGLNPIMVVATA-GTTDTGAIDP--- 166 (345)
T ss_pred H------------hcCeEEeeeCCCCCc------------CHHHHHHHHHHHHHCCCCcEEEEEec-ccCCCCCCCC---
Confidence 1 123344444322222 889999988751 12566676666 7778887766
Q ss_pred HHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcc
Q psy14484 224 YLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNIN 300 (430)
Q Consensus 224 ~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~ 300 (430)
+++|.++|+++|+++|+|++|+++.............. ..|.+ +++|.++++ .++|+++.+
T Consensus 167 -~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-~g~g~~~~~-------------- 230 (345)
T cd06450 167 -LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVP-LGCSAVLVR-------------- 230 (345)
T ss_pred -HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCC-cchHHHHHH--------------
Confidence 99999999999999999999985422111000000111 35654 466977655 355554333
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHH
Q psy14484 301 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS 380 (430)
Q Consensus 301 ~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a 380 (430)
.+++.+++..+....-++..++..++.+++.+.|+++.....+ ....+.++.|.+. +... .....
T Consensus 231 -----------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~iv~f~~~-~~~~-~~~~~ 295 (345)
T cd06450 231 -----------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELL--GEPNLSLVCFRLK-PSVK-LDELN 295 (345)
T ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCceeEEEEEEC-Ccch-hhHHH
Confidence 2222233333321112345566777888888888765222111 1234566667665 3100 01113
Q ss_pred HHHHHHHHHCCcEEeec-----CCEEEEeCCCCC-CHHHHHHHHHHHHH
Q psy14484 381 KKFFVAALKNELLLRPI-----GNTVYLMPPYIL-NKNEIQHMTSAIFQ 423 (430)
Q Consensus 381 ~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~-t~e~i~~~~~~l~~ 423 (430)
.++.+.|.++|+++.+. +.++|++++..+ |++|++++++.|++
T Consensus 296 ~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 296 YDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 57889999996554432 368999999875 99999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=163.25 Aligned_cols=332 Identities=14% Similarity=0.077 Sum_probs=191.8
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHH-hhcccc---ccCCCCCH---HHHH-HHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQL-NKLEHV---MLSNLTHK---PVIK-LSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~-~~~~~~---~~~~~~~~---~~~~-l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
+++|.+..+- ++ -+|+|++++.+.+ ..+... .......+ ..++ .++.++++++.+...+++ +||++
T Consensus 19 ~~~~~~~~~~--~~---~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~ 92 (402)
T cd00378 19 RETLELIASE--NF---TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP-HSGSQ 92 (402)
T ss_pred HhCeeeeccC--Cc---CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec-CCcHH
Confidence 4577776652 22 3899999998765 232111 11111222 2233 345567788755444444 47899
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC---CCCCCCCChhH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANE 182 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 182 (430)
|+..+++.+.. ++++|++.++.|.++...... .. ..........++++.+ +..
T Consensus 93 a~~~~l~~l~~--------~Gd~Vl~~~~~~~~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~~~i-------- 148 (402)
T cd00378 93 ANLAVYFALLE--------PGDTIMGLDLSHGGHLTHGSF-TK-------VSASGKLFESVPYGVDPETGLI-------- 148 (402)
T ss_pred HHHHHHHHhcC--------CCCEEEEecCccCcccccccc-cc-------ccccceeEEEecCCcCcccCCc--------
Confidence 99999988764 567899999998765322110 00 0000111223333321 222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc-cCCCCccc-ccccccC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA-VGCGRTGK-FFACEHA 260 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~-~g~g~~g~-~~~~~~~ 260 (430)
|++++++.+.+ .+++++++.+ .. .|...+ +++|.++|+++|+++|+||+| .|+...|. ...+.
T Consensus 149 ----d~~~l~~~i~~--~~~~~v~~~~-~~--~~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-- 213 (402)
T cd00378 149 ----DYDALEKMALE--FKPKLIVAGA-SA--YPRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-- 213 (402)
T ss_pred ----CHHHHHHHHHh--CCCCEEEecC-cc--cCCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--
Confidence 88999999864 3455555533 22 233444 999999999999999999996 34422231 11111
Q ss_pred CCCCcee--eeecccCCCccccEEEEEcH-HHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHH-h--hcCHHHH
Q psy14484 261 EIWPDFL--CLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIF-N--KDNILQR 333 (430)
Q Consensus 261 ~~~~d~~--~~sK~l~gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~~-~--~~~~~~~ 333 (430)
..|++ +++|+++| .+.|++++++ ++.+.+.. ......++. ......++..++... + .++..++
T Consensus 214 --~~dv~~~s~sK~l~G--~~gg~i~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 283 (402)
T cd00378 214 --GADVVTTTTHKTLRG--PRGGLILTRKGELAKKINS------AVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQ 283 (402)
T ss_pred --CCcEEEeccccCCCC--CCceEEEeccHHHHHHHHH------HhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34655 67899944 6889999876 88777654 111111221 222232323333322 1 1345667
Q ss_pred HHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-----------cCCEEE
Q psy14484 334 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-----------IGNTVY 402 (430)
Q Consensus 334 ~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-----------~~~~lR 402 (430)
+.++.+++.+.|+++ ...... .+..+.++++.+. +... . ...+.+.|.++||.+.+ ....+|
T Consensus 284 ~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~v~v~~~-~~~~-~---~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lR 356 (402)
T cd00378 284 VVENAKALAEALKER-GFKVVS-GGTDNHLVLVDLR-PKGI-T---GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIR 356 (402)
T ss_pred HHHHHHHHHHHHHhC-CCeEee-cCCCCeEEEEeCC-ccCC-C---HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeE
Confidence 788888888888765 222211 1123556666654 3211 1 24566778888999963 125799
Q ss_pred EeCCCC----CCHHHHHHHHHHHHHHHHH
Q psy14484 403 LMPPYI----LNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 403 ~~~~~~----~t~e~i~~~~~~l~~~l~~ 427 (430)
++++.. +++++++++++.|++++.+
T Consensus 357 i~~~~~~~~~~~~~di~~~~~~l~~~~~~ 385 (402)
T cd00378 357 IGTPAMTTRGMGEEEMEEIADFIARALKD 385 (402)
T ss_pred ecCHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence 988764 4799999999999997753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-18 Score=152.13 Aligned_cols=330 Identities=15% Similarity=0.161 Sum_probs=192.1
Q ss_pred EecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHH
Q psy14484 37 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116 (430)
Q Consensus 37 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~ 116 (430)
+||.|.++. | .+|++++++.++-.... ..++.++...+++++++++++ .+.++|++|||+||..++...++
T Consensus 2 ~~f~SDn~~---g-~~~~m~eam~~a~~~~~---~~YG~D~~~~~~e~~~ae~~g--~~a~~Fv~sGT~aN~lal~~~~~ 72 (342)
T COG2008 2 IDFRSDNVA---G-PTPEMREALAAANAVGD---DVYGEDPTTNALEQRIAELFG--KEAALFVPSGTQANQLALAAHCQ 72 (342)
T ss_pred CccccCccC---C-CCHHHHHHHHhccccCC---CCCCCCHHHHHHHHHHHHHhC--CceEEEecCccHHHHHHHHHhcC
Confidence 577776443 2 78999999998743221 235667788899999999995 38999999999999999998875
Q ss_pred hhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHHHHHHHHHHHH
Q psy14484 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILL 195 (430)
Q Consensus 117 ~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l 195 (430)
+...|+. ...-|-++..+- . +.+ ......++. +...... ++++++..+
T Consensus 73 --------~~~~vi~-~~~aHi~~~E~G---a-~~~-------~~~~~~~~~~~g~~Gkl-----------t~e~v~~~i 121 (342)
T COG2008 73 --------PGESVIC-HETAHIYTDECG---A-PEF-------FGGGQKLPIVPGADGKL-----------TPEDVEAAI 121 (342)
T ss_pred --------CCCeEEE-eccccceecccC---c-HHH-------HcCCceeccCCCCCCCc-----------CHHHHHHhh
Confidence 3344443 334443322111 1 100 111112222 2122222 788888877
Q ss_pred HhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--CCCcccccccccCCCCCceeeee
Q psy14484 196 KKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACEHAEIWPDFLCLS 270 (430)
Q Consensus 196 ~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g--~g~~g~~~~~~~~~~~~d~~~~s 270 (430)
... ...+.+++.+. -.+++| .++|.++|++|.++|++||+.|++|-+--. ....| -+...+.-..|.++|+
T Consensus 122 ~~~d~~~~~~~~~~~e~-~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg--~~~~~~~~~~D~v~~~ 197 (342)
T COG2008 122 RPDDIHHAPTPLAVLEN-TATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALG--VALKTIKSYVDSVSFC 197 (342)
T ss_pred cCCCcccCCCceEEEee-ccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcC--CCHHHHHhhCCEEEEe
Confidence 742 12345555555 455778 778889999999999999999999955210 00011 0111122236777655
Q ss_pred cccCCCccccEEEE-EcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc-CHHH--HHHHHHHHHHHHHH
Q psy14484 271 KGITGGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQ--RISQDMKKITKALT 346 (430)
Q Consensus 271 K~l~gG~~~ig~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~-~~~~--~~~~~~~~l~~~l~ 346 (430)
-+-++| +|+++++ ++.++.+.+.. . ....++-+.-.-+-.+.....|+ +. .... +..+++++|.++++
T Consensus 198 ~tK~g~-~~~gAiv~gn~~~~~~a~~---~-rK~~Ggl~~k~r~laA~~~~~l~---~~~~~~~~~Han~mA~~La~~~~ 269 (342)
T COG2008 198 LTKGGG-APVGAIVFGNRDFAKRARR---W-RKRAGGLMRKARFLAAQGLYALE---DDVWRLAADHANAMAARLAEGLE 269 (342)
T ss_pred cccCCc-ceeeeEEEcCHHHHHHHHH---H-HHHhcccHhhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhh
Confidence 333344 6888665 57777766543 0 11233333222232333333333 22 1222 22333667777776
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.....+. ..+.+.+++.+.++ ... . -+......+...|+...+.+..+||..+..++++++++++..+++.+
T Consensus 270 ~~~G~~~--~~~~~tN~vf~~l~-~~~---i-~~l~~~~~~~~~~~~~~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 270 AKPGVKL--AFPVETNMVFVRLP-ESA---I-EALRLAGALFYRGVLIGAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred hcCCcee--ccCCcccEEEEECC-hHH---H-HHHHhhchhheeeeeccCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 4422222 22367788877776 310 0 02233444555566655444578999999999999999999988764
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-17 Score=158.98 Aligned_cols=291 Identities=15% Similarity=0.100 Sum_probs=181.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
..+...++++.+++.++ .+++++++||++|+..+++.+... +++.|++..++|++........
T Consensus 16 ~~~~~~~~~~~la~~~~--~~~~~~~~sgt~al~~~l~~l~~~-------~gd~vl~~~~~~~~~~~~~~~~-------- 78 (352)
T cd00616 16 LGPKVREFEKAFAEYLG--VKYAVAVSSGTAALHLALRALGIG-------PGDEVIVPSFTFVATANAILLL-------- 78 (352)
T ss_pred CCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCC-------CCCEEEeCCcchHHHHHHHHHc--------
Confidence 35677899999999995 468999999999999999877321 5678999888888653322221
Q ss_pred hhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
..+..+++.+. .+.. |++++++.++ +++++|++.+ + +|...+ +++|.++|+
T Consensus 79 -----g~~~~~~~~~~~~~~~------------d~~~l~~~i~---~~~~~v~~~~-~---~G~~~~----~~~i~~l~~ 130 (352)
T cd00616 79 -----GATPVFVDIDPDTYNI------------DPELIEAAIT---PRTKAIIPVH-L---YGNPAD----MDAIMAIAK 130 (352)
T ss_pred -----CCeEEEEecCCCcCCc------------CHHHHHHhcC---cCCeEEEEEC-C---CCCcCC----HHHHHHHHH
Confidence 12233444332 1221 7888988884 4677777654 3 565555 899999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEc-HHHHHhhhc---cCCccc----
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-DKIYNSIYY---KNNINI---- 301 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~-~~~~~~~~~---~~~~~~---- 301 (430)
++|+++|+|++|+ +|... .....+...|+.++| |.+++| ..|+++.+ +++.+.+.. .+....
T Consensus 131 ~~~i~li~D~a~~-~g~~~---~~~~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (352)
T cd00616 131 RHGLPVIEDAAQA-LGATY---KGRKVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKY 204 (352)
T ss_pred HcCCeEEEECCCC-CCCeE---CCEEcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCcc
Confidence 9999999999997 43221 111123335666665 988654 45777775 466554432 010000
Q ss_pred --ccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEe---ecceEEEEEEeecCCccc
Q psy14484 302 --FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR---QKGMIWAFDVIIEDPEQI 376 (430)
Q Consensus 302 --~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~---~~g~~~~~~~~~~~~~~~ 376 (430)
...+.++..+++.++.+...++.+ +...++.+++.+++++.|+++.....+.... ....++.+.+. .... .
T Consensus 205 ~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 280 (352)
T cd00616 205 EHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLD-PEAG-E 280 (352)
T ss_pred ccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEEC-CcCC-C
Confidence 011122334555555555444433 4466777888999999988763332221111 12234444443 2101 1
Q ss_pred hhHHHHHHHHHHHCCcEEeec----------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 377 ETFSKKFFVAALKNELLLRPI----------------------------GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 377 ~~~a~~~~~~l~~~Gv~~~~~----------------------------~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
. ...+.+.|.++||.+... .+.+|+.++..+|++|++.++++|+
T Consensus 281 ~--~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 281 S--RDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred C--HHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 1 367999999999966521 1479999999999999999998874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-17 Score=159.24 Aligned_cols=333 Identities=14% Similarity=0.114 Sum_probs=190.7
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHh-hcccccc-CCC--CCHHHHH----HHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEHVML-SNL--THKPVIK----LSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~~-~~~--~~~~~~~----l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
+.++++.++ .++ -+|+|++++...+. ....... ..+ ..+.... .++.+++.++.....+++ +||++
T Consensus 25 ~~~~~l~~~--~n~---~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~-~sgt~ 98 (416)
T PRK00011 25 EEHIELIAS--ENF---VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQP-HSGSQ 98 (416)
T ss_pred hcCeeeecc--cCc---CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeec-CCchH
Confidence 566777776 232 48999999877653 2211111 011 1122223 344788888766555554 56899
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIA 184 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 184 (430)
|+..++..+.. +++.|++.+++|.++......... .........++.+. ...
T Consensus 99 al~~~l~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~----------- 151 (416)
T PRK00011 99 ANAAVYFALLK--------PGDTILGMDLAHGGHLTHGSPVNF--------SGKLYNVVSYGVDEETGL----------- 151 (416)
T ss_pred HHHHHHHHhcC--------CCCEEEEeccccCCcccccccccc--------ccceeeEeecCcCcccCC-----------
Confidence 99998887753 567899988888654221110000 00001112233221 111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIW 263 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~ 263 (430)
.|++++++.+++ .+++++++.. ++.|...+ +++|.++|+++|+++|+|++|. |+...|.. .. ..+ .
T Consensus 152 -~d~~~l~~~i~~--~~~k~v~~~~---~~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~~-~~~-~ 218 (416)
T PRK00011 152 -IDYDEVEKLALE--HKPKLIIAGA---SAYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-PS-PVP-H 218 (416)
T ss_pred -cCHHHHHHHHHh--cCCCEEEECC---CcCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc-CC-CCC-C
Confidence 288999999974 2455666532 22343445 8999999999999999999985 32111210 11 112 3
Q ss_pred Ccee--eeecccCCCccccEEEEEc-HHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHH-HHHhh--cCHHHHHHH
Q psy14484 264 PDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATL-EIFNK--DNILQRISQ 336 (430)
Q Consensus 264 ~d~~--~~sK~l~gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l-~~~~~--~~~~~~~~~ 336 (430)
.|++ +++|+++| .+.|+++++ +++.+.+.. ......++. ....+++...++ +.+++ ++..+++++
T Consensus 219 ~di~~~S~~K~l~g--~~gg~i~~~~~~~~~~l~~------~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~ 290 (416)
T PRK00011 219 ADVVTTTTHKTLRG--PRGGLILTNDEELAKKINS------AVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVK 290 (416)
T ss_pred CcEEEecCCcCCCC--CCceEEEeCCHHHHHHHHH------HhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4655 57799854 578999995 688777654 111111221 222333322333 33221 446677888
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c-------CCEEEEeC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I-------GNTVYLMP 405 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~-------~~~lR~~~ 405 (430)
+++++++.|+++ ...... -.....++++.+. +... . ...+.+.|.++||.+.. . ...+|+..
T Consensus 291 ~~~~l~~~L~~~-g~~~~~-~~~~~~~~~i~~~-~~~~--~--~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~ 363 (416)
T PRK00011 291 NAKALAEALAER-GFRVVS-GGTDNHLVLVDLR-SKGL--T--GKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGT 363 (416)
T ss_pred HHHHHHHHHHhC-CCeeee-cCCCCeEEEEeCc-ccCC--C--HHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecC
Confidence 899999988875 222111 1123355556554 2211 1 25688888899999873 1 24688854
Q ss_pred CC----CCCHHHHHHHHHHHHHHHHH
Q psy14484 406 PY----ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 406 ~~----~~t~e~i~~~~~~l~~~l~~ 427 (430)
.. .++++|++++++.|++++..
T Consensus 364 ~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 364 PAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred HHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 22 56799999999999987653
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=143.59 Aligned_cols=343 Identities=14% Similarity=0.151 Sum_probs=202.9
Q ss_pred ccccccCCCCCH----HHHHHHHHHHhhcc----------ccccCCCCCHHHHHHHHHHHhhcCCC--CCeEEEcCCchH
Q psy14484 42 SWWVNLFGHSNS----YINKALKNQLNKLE----------HVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGAS 105 (430)
Q Consensus 42 ~~~~~~lG~~~p----~v~~a~~~~~~~~~----------~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~v~~~~sgte 105 (430)
.-|..+||-+|| ++.+..++...++. .+..+.+...+.+.+++.|.+.++.. .+.|.+|||+..
T Consensus 29 t~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs 108 (417)
T COG3977 29 TPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQS 108 (417)
T ss_pred CCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccc
Confidence 334677777776 44444444332221 11223444577788999999988754 458999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIA 184 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 184 (430)
|...+..+...++ ..|. .+..++-..|-|-|+-...+. ...|....+.....+. ...|+.
T Consensus 109 ~fFYlfNlF~G~~-sdG~-~k~illPLaPeYiGY~d~~l~-------~d~fVs~kP~iel~~~g~FKY~v---------- 169 (417)
T COG3977 109 AFFYLFNLFAGRR-SDGT-EKKILLPLAPEYIGYADAGLE-------EDLFVSAKPNIELLPAGQFKYHV---------- 169 (417)
T ss_pred hHHHHHHHhcCcc-CCCc-ceeEeeccChhhccccccccC-------ccceeeccCCcccccccceeecc----------
Confidence 9888877765543 2221 234455566788887432221 1111111111111110 001111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|.+.|+ + .+.+.+|+|+- +.|++| .+.+.+.+.+|-.++++||++||+|.+|. .-+.+-.|.-...-+.+
T Consensus 170 --DF~~l~--i---~e~~g~ic~SR-PtNPTG-NVlTdeE~~kldalA~~~giPliIDnAYg-~PFP~iifsd~~~~w~~ 239 (417)
T COG3977 170 --DFEHLH--I---GESTGAICVSR-PTNPTG-NVLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIFSDATPLWNE 239 (417)
T ss_pred --CHHHcc--c---ccccceEEecC-CCCCCC-CcccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceecccccccCCC
Confidence 666654 2 36789999998 889999 66677889999999999999999999985 44444333212222345
Q ss_pred cee---eeec-ccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----HHhhcCHHHHHH
Q psy14484 265 DFL---CLSK-GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----IFNKDNILQRIS 335 (430)
Q Consensus 265 d~~---~~sK-~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~-----~~~~~~~~~~~~ 335 (430)
+++ ++|| ++- | .|+|.+++++++++.+..-+ -.-+..+...+.+.+..+++ .+.++-++.-++
T Consensus 240 NiilC~SLSK~GLP-G-~R~GIiIane~viqaitnmn------~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~ 311 (417)
T COG3977 240 NIILCMSLSKLGLP-G-SRCGIIIANEKVIQAITNMN------GIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYR 311 (417)
T ss_pred CEEEEeehhhcCCC-C-cceeEEEccHHHHHHHHhcc------ceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHH
Confidence 554 5677 344 4 79999999999998876511 11111111111222222221 122222233334
Q ss_pred HHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------------CCE
Q psy14484 336 QDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------GNT 400 (430)
Q Consensus 336 ~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------------~~~ 400 (430)
+..+.-.+.|+.. ...+.. --+++|.++.|-+. .+-. .. ..+++++|+++|+++.|+ +.|
T Consensus 312 ~~~q~~~~~l~~~lp~~~~~-iHkpEGAIFlWLWf-~dLP-It--t~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC 386 (417)
T COG3977 312 NRVQTTIAILRRYLPEYRCL-IHKPEGAIFLWLWF-KDLP-IT--TEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQC 386 (417)
T ss_pred HHHHHHHHHHHHhcCcccee-eecCCcceeehhhh-ccCC-CC--HHHHHHHHHhCeEEEecccccCCCCCCCCCCccce
Confidence 4444444444433 333432 23677887776554 3322 11 368999999999999984 358
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|+ ++.-++++|+..+++|.+.+++.
T Consensus 387 ~Rm--n~~~~~~~ie~Gva~lae~ve~~ 412 (417)
T COG3977 387 MRM--NYVPEPEKIEKGVAILAEEVERA 412 (417)
T ss_pred EEE--ecCCCHHHHHHHHHHHHHHHHHH
Confidence 888 78889999999999999988764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=163.17 Aligned_cols=286 Identities=15% Similarity=0.159 Sum_probs=185.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
++.++...++++.++++.+ .+.+++++||++|+..++..+.. ++++|++..+.|++........
T Consensus 36 r~~~p~~~~le~~la~l~g--~~~a~~~~sG~~Ai~~~l~~l~~--------~gd~Vl~~~~~y~~~~~~~~~~------ 99 (369)
T cd00614 36 RIGNPTVDALEKKLAALEG--GEAALAFSSGMAAISTVLLALLK--------AGDHVVASDDLYGGTYRLFERL------ 99 (369)
T ss_pred CCCChhHHHHHHHHHHHHC--CCCEEEEcCHHHHHHHHHHHHcC--------CCCEEEECCCCcchHHHHHHHH------
Confidence 4567888999999999984 46788899999999999998764 5678888888887753211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......+..+++.. |+++++++++ +++++|++|+ ++|++|.+.+ +++|.++|
T Consensus 100 ---~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~~~~v~~e~-~~np~g~~~d----l~~i~~la 151 (369)
T cd00614 100 ---LPKLGIEVTFVDPD-----------------DPEALEAAIK---PETKLVYVES-PTNPTLKVVD----IEAIAELA 151 (369)
T ss_pred ---HhhcCeEEEEeCCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCeecC----HHHHHHHH
Confidence 00111223334332 6788888885 4688999999 9999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC-ccccEEEEEcH-HHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG-~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+|+++... .. .......+|++ +++|.++|+ ..+.|++++++ ++.+.+.. .....+.
T Consensus 152 ~~~g~~livD~t~~~~-~~-----~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~------~~~~~g~ 219 (369)
T cd00614 152 HEHGALLVVDNTFATP-YL-----QRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRF------LRLALGT 219 (369)
T ss_pred HHcCCEEEEECCCcch-hc-----CChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHH------HHHhhCC
Confidence 9999999999998622 11 11123346766 678999873 25688899977 77776664 1111233
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..+..+...|+.+ +...++..++++++.+.|++... +|.+. ...+.|.++.|++. .+
T Consensus 220 ~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~-~~- 295 (369)
T cd00614 220 ILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELK-GG- 295 (369)
T ss_pred CCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeC-CC-
Confidence 44566555555555432 22456667778888888876522 22211 12356889999886 42
Q ss_pred ccchhHHHHHHHHHHHC--C--------cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALKN--E--------LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~--G--------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+.+.+|.+.|.-- + ++..| ..+.+|+++.+ |+.+.+++.|++++
T Consensus 296 ---~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 296 ---LEAAKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred ---HHHHHHHHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 11134555554321 1 01101 02578998775 56788888887775
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=155.22 Aligned_cols=340 Identities=9% Similarity=-0.013 Sum_probs=207.3
Q ss_pred CCHHHHHHHHHHHhh-ccccccCCCCCHHHHHHHHHHHhhcCCC-C-CeEEE--cCCchHHHHHHHHHHHHhhhh----c
Q psy14484 51 SNSYINKALKNQLNK-LEHVMLSNLTHKPVIKLSEKLSSLTQYK-L-GHCFY--GSDGASAVEVALKMSFHYWYN----K 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~-~~v~~--~~sgteA~~~al~~~~~~~~~----~ 121 (430)
.+|++.+++...+.+ ...........+..++..++++++++.+ . +++.+ |+||||||..|+..++..... .
T Consensus 53 ~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~ 132 (431)
T TIGR01788 53 MEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAA 132 (431)
T ss_pred CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999998888753 2222222233377788889999999865 3 45655 799999999999888743211 1
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
|.+....+++.+..-|-+..-+.... ..++..++.+.. ++. |+++|+++++ +
T Consensus 133 g~~~~~~~ii~s~~~H~sv~ka~~~l------------g~~v~~i~~d~~~~~v------------d~~~L~~~i~---~ 185 (431)
T TIGR01788 133 GKPTDKPNLVMGSNVQVCWEKFARYF------------DVELREVPMDPGRYVI------------DPEQVVEAVD---E 185 (431)
T ss_pred CCCCCCcEEEEcCcchHHHHHHHHHc------------CceeEEEecCCCceee------------CHHHHHHHHh---h
Confidence 21112335666666665533222211 123445555432 222 8899999997 4
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCEEEEeccccCCCC---ccc-ccccccCCCCCceeeee
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR---TGK-FFACEHAEIWPDFLCLS 270 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------gi~li~DEv~~g~g~---~g~-~~~~~~~~~~~d~~~~s 270 (430)
++.+|++.. +++++|.+.| +++|.++|+++ ++++++|.+|+|+.. .+. .+.+. ....|-+++|
T Consensus 186 ~t~lV~~t~-g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~--~~~~DSis~s 258 (431)
T TIGR01788 186 NTIGVVCIL-GTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR--LPRVKSINVS 258 (431)
T ss_pred CCeEEEEEe-CCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC--CCCceEEEEC
Confidence 578888888 9999999999 99999999999 999999999986421 121 12222 2246778888
Q ss_pred --cccCCCccccEEEEEcHH--HHHhhhccC-CcccccccCCCCCCHH--HHHHHHHHHHHHhhc---CHHHHHHHHHHH
Q psy14484 271 --KGITGGYLPLSLVMTTDK--IYNSIYYKN-NINIFLHSHSYSGNPL--ACCAALATLEIFNKD---NILQRISQDMKK 340 (430)
Q Consensus 271 --K~l~gG~~~ig~~~~~~~--~~~~~~~~~-~~~~~~~~~t~~~~~~--~~~aa~~~l~~~~~~---~~~~~~~~~~~~ 340 (430)
|.+.+. ..+|+++.+++ +.+.+.... -........+...... ...+.+..|..+... +..++..++.++
T Consensus 259 ~HK~~~~P-~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~ 337 (431)
T TIGR01788 259 GHKYGLVY-PGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARY 337 (431)
T ss_pred chhccCCC-CCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 554333 57899998764 323322100 0000000012222211 223344555544333 345566778888
Q ss_pred HHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----ec---C-CEEEEeCCCCCCHH
Q psy14484 341 ITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI---G-NTVYLMPPYILNKN 412 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~---~-~~lR~~~~~~~t~e 412 (430)
+.++|+++..+..+.. .....+++|... +....... ..++.+.|.++|+.+. |. + ..+|++....++++
T Consensus 338 l~~~L~~~~~~el~~~-~~~~~iV~Fr~~-~~~~~~~~-~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~ 414 (431)
T TIGR01788 338 LAEEIAKLGPFEIISD-GSGIPLVAFKLK-DDADPGYT-LYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRD 414 (431)
T ss_pred HHHHHHhCCCEEEeeC-CCCceEEEEEeC-CCCCCCcC-HHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHH
Confidence 8888876532222211 124556666665 32110111 3578999999998742 21 1 36799887788999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14484 413 EIQHMTSAIFQTFNEV 428 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~~ 428 (430)
.++.+++.|++++.++
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 415 LAELLIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=163.74 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=182.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++...+|++.++++. +.+.+++++||++|+..++..+.. +++.|++..+.|.++.........
T Consensus 72 r~~~Pt~~~LE~~lA~l~--g~~~~l~~~sG~~Ai~~al~al~~--------~GD~Vl~~~~~Y~~~~~~~~~~~~---- 137 (418)
T PLN02242 72 RHFNPTVLNLGRQMAALE--GTEAAYCTASGMSAISSVLLQLCS--------SGGHVVASNTLYGGTHALLAHFLP---- 137 (418)
T ss_pred CCCChhHHHHHHHHHHHh--CCCeEEEEccHHHHHHHHHHHHhC--------CCCEEEEcCCcHHHHHHHHHHhhh----
Confidence 456788999999999998 556788999999999999988765 667888888888654322111000
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
........+++.. |+++++++++. +++++|+++. ++|++|.+.+ +++|.++|
T Consensus 138 ----~~~G~~~~~~d~~-----------------d~e~l~~~i~~--~~tklV~les-p~NPtG~v~d----l~~I~~la 189 (418)
T PLN02242 138 ----RKCNITTTFVDIT-----------------DLEAVKKAVVP--GKTKVLYFES-ISNPTLTVAD----IPELARIA 189 (418)
T ss_pred ----hccCceEEEcCCC-----------------CHHHHHHhcCc--CCCEEEEEec-CCCCCCcccC----HHHHHHHH
Confidence 0011122223222 78889888852 2588999998 9999998776 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccc-cEEEEEcHHHHHhhhccCCccccccc--CC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP-LSLVMTTDKIYNSIYYKNNINIFLHS--HS 307 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~-ig~~~~~~~~~~~~~~~~~~~~~~~~--~t 307 (430)
+++|+++|+||+|+.+.. . ...++ .|++ +|||.++++..+ .|++++++++++.+.. .... ..
T Consensus 190 ~~~gi~livDea~~~~~~-~----~~~~g--~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~------~~~~~~~~ 256 (418)
T PLN02242 190 HEKGVTVVVDNTFAPMVL-S----PARLG--ADVVVHSISKFISGGADIIAGAVCGPAELVNSMMD------LHHGALML 256 (418)
T ss_pred HHhCCEEEEECCCCccCC-C----HHHcC--CcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHH------Hhhhhhhc
Confidence 999999999999974421 1 11123 4544 688999874356 4888889888877664 1111 11
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHchh---cCCCee----------eE---eecceEEEEEEee
Q psy14484 308 YSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSLI---THPKII----------NF---RQKGMIWAFDVII 370 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~---~~~~~~----------~~---~~~g~~~~~~~~~ 370 (430)
.+..+..+.|+..++. ++. +...++..++++++.+.|++.. .+|.+. .. .+-|.++.|++.
T Consensus 257 ~g~~~~~~~A~l~~~~-l~tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~- 334 (418)
T PLN02242 257 LGPTMNPKVAFELSER-LPHLSLRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMD- 334 (418)
T ss_pred cCCCCCHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEEC-
Confidence 2223333444433322 111 2234566778888888887651 122211 11 367888999886
Q ss_pred cCCccchhHHHHHHHHHHH------CCc--------EEee---------------c---CCEEEEeCCCCCCHHHHHHHH
Q psy14484 371 EDPEQIETFSKKFFVAALK------NEL--------LLRP---------------I---GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 371 ~~~~~~~~~a~~~~~~l~~------~Gv--------~~~~---------------~---~~~lR~~~~~~~t~e~i~~~~ 418 (430)
. .+.+.+|++.+.- .++ +..| . .+.+|+++.+.. +.+.++
T Consensus 335 ~-----~~~~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli 406 (418)
T PLN02242 335 T-----EERANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRW 406 (418)
T ss_pred C-----HHHHHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHH
Confidence 3 1224667777651 111 1101 0 246888766432 367777
Q ss_pred HHHHHHHHHh
Q psy14484 419 SAIFQTFNEV 428 (430)
Q Consensus 419 ~~l~~~l~~~ 428 (430)
+.|+++|+.|
T Consensus 407 ~dl~~al~~~ 416 (418)
T PLN02242 407 SQFEKALSAM 416 (418)
T ss_pred HHHHHHHHHh
Confidence 7778887765
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-16 Score=149.35 Aligned_cols=322 Identities=16% Similarity=0.141 Sum_probs=212.3
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
+|+|++|+....-. ++..-......++.+.|..+++..- +-++++.||+.|+++++..+.. +.++|+
T Consensus 17 ~~~V~~am~~~~~~----h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~--------pgdkVL 84 (383)
T COG0075 17 PPRVLLAMARPMVG----HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLVE--------PGDKVL 84 (383)
T ss_pred CHHHHHHhcCCCCC----CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhccC--------CCCeEE
Confidence 56777776654221 1112223556677788888886442 4577778999999999998876 678888
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
+...+..|....-+. ..+..++..+..+-.... ++++++++|++. +++.+|.+.+
T Consensus 85 v~~nG~FG~R~~~ia-----------~~~g~~v~~~~~~wg~~v------------~p~~v~~~L~~~-~~~~~V~~vH- 139 (383)
T COG0075 85 VVVNGKFGERFAEIA-----------ERYGAEVVVLEVEWGEAV------------DPEEVEEALDKD-PDIKAVAVVH- 139 (383)
T ss_pred EEeCChHHHHHHHHH-----------HHhCCceEEEeCCCCCCC------------CHHHHHHHHhcC-CCccEEEEEe-
Confidence 888888886432222 222233344433311111 889999999964 4566666666
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCccccEEEEEcHH
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~~~~~~~ 288 (430)
.-+++|...| +++|.++|++||+++|||.|-+ +|- ..+..+.|++ |+++- -|++++- -.+|.+..+++
T Consensus 140 ~ETSTGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~Gg--~~~~vd~wgi--Dv~itgSQK~l~~P-PGla~v~~S~~ 209 (383)
T COG0075 140 NETSTGVLNP----LKEIAKAAKEHGALLIVDAVSS-LGG--EPLKVDEWGI--DVAITGSQKALGAP-PGLAFVAVSER 209 (383)
T ss_pred ccCcccccCc----HHHHHHHHHHcCCEEEEEeccc-CCC--cccchhhcCc--cEEEecCchhccCC-CccceeEECHH
Confidence 6668898988 9999999999999999999876 653 3445565665 65543 3999874 35889999998
Q ss_pred HHHhhhccCCccccc-------------ccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCC
Q psy14484 289 IYNSIYYKNNINIFL-------------HSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 289 ~~~~~~~~~~~~~~~-------------~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
..+.+.....+ ++. ....++++.....+..++|+.+..+. ..++-+++++.++++++++ ++.
T Consensus 210 a~e~~~~~~~~-~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~ 287 (383)
T COG0075 210 ALEAIEERKHP-SFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-GLE 287 (383)
T ss_pred HHHHHhcCCCC-ceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 87776642111 011 13344445556667778898776654 4566677888889999877 333
Q ss_pred Cee-eEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 353 KII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 353 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+. .-.....+..+..+ .+.. . .++...++ +.|+.+.++ +..+||.-.-..+.+++..++.+|+.++
T Consensus 288 ~~~~~~~~s~tvta~~~P-~g~~-~----~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L 361 (383)
T COG0075 288 LFADPERRSPTVTAIKVP-EGVD-D----KKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAAL 361 (383)
T ss_pred cccCcccCCCceEEEECC-CCCC-c----HHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHHHH
Confidence 222 21223345555555 4322 1 22333444 448888765 4789999888889999999999999999
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
.++
T Consensus 362 ~~~ 364 (383)
T COG0075 362 REL 364 (383)
T ss_pred HHc
Confidence 764
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-16 Score=150.77 Aligned_cols=292 Identities=15% Similarity=0.137 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHhhcCCCCCeE--EEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 76 HKPVIKLSEKLSSLTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~v--~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
....+++.++++++++.+.+++ +||+||||||..|+..++.+. +++ .|+.+..-|.+..-+....
T Consensus 64 ~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~------~~~-~ii~s~~~H~Sv~ka~~~l------ 130 (380)
T PRK02769 64 FDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELF------PDG-TLYYSKDTHYSVSKIARLL------ 130 (380)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhC------CCc-EEEeCCCceehHHHHHHHc------
Confidence 3566788899999998665554 899999999999998887642 333 4555566665543222221
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
..+...++...+.+. |+++|++.+++.+.++.+|++.. +++++|.+.| +++|.++|+
T Consensus 131 ------g~~~~~V~~~~~g~i------------d~~~L~~~i~~~~~~t~lvv~t~-gtt~tG~idp----i~~I~~i~~ 187 (380)
T PRK02769 131 ------RIKSRVITSLPNGEI------------DYDDLISKIKENKNQPPIIFANI-GTTMTGAIDN----IKEIQEILK 187 (380)
T ss_pred ------CCCCceeccCCCCcC------------cHHHHHHHHHhCCCCcEEEEEEe-CCCCCcccCC----HHHHHHHHH
Confidence 122234443332332 89999999986544588888898 9999999999 999999999
Q ss_pred hcC---CEEEEeccccCCCCcccc---cccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCccccc-c
Q psy14484 234 NYN---IHLIADEIAVGCGRTGKF---FACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL-H 304 (430)
Q Consensus 234 ~~g---i~li~DEv~~g~g~~g~~---~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~-~ 304 (430)
++| +++++|.+|+|+ ..... -.++... ..|.+++| |.+++. .++|+++.+++..+.+... ...+. .
T Consensus 188 ~~g~~~~~lHVDaA~gg~-~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P-~g~G~l~~r~~~~~~~~~~--~~yl~~~ 262 (380)
T PRK02769 188 KIGIDDYYIHADAALSGM-ILPFVNNPPPFSFAD-GIDSIAISGHKFIGSP-MPCGIVLAKKKYVERISVD--VDYIGSR 262 (380)
T ss_pred HhCCCceEEEEEecccce-eecccCccccCCccC-CCCEEEECCcccCCCC-CCcEEEEEehhhhhhcccC--ccccCCC
Confidence 998 699999999864 22100 0112112 57888888 655434 6799999998876655331 00000 0
Q ss_pred cCCCCC--CHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhH
Q psy14484 305 SHSYSG--NPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379 (430)
Q Consensus 305 ~~t~~~--~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 379 (430)
..|+.+ +..+.++..++|+.+...+ ..++..++.+++.++|++. +... -..+..+.+.|..+ +
T Consensus 263 d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~--~~~p~~~~v~f~~~-~-------- 330 (380)
T PRK02769 263 DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPA--WRNPNSITVVFPCP-S-------- 330 (380)
T ss_pred CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEE--EcCCCceEEEEcCC-C--------
Confidence 112222 2345566667777665543 4466677888888888654 2221 12333344444332 1
Q ss_pred HHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 380 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 380 a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
..+. +|..+.+.++.+++.+...++++.+|.+++.|...+.
T Consensus 331 -~~~~-----~~w~l~~~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 331 -ERIW-----KKWHLATSGNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred -HHHH-----hCeeEcccCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 1222 6777777777899988888999999999999988764
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=143.31 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=192.0
Q ss_pred CHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 76 HKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
....+++++.+.+..+ .+|+++.+++|+|.|+++.+-+++. +.+-.+++.|.|.|..-...-
T Consensus 124 ~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLad--------pgdafLvPtPyY~gfdrdl~~------ 189 (471)
T KOG0256|consen 124 PSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLAD--------PGDAFLVPTPYYPGFDRDLRW------ 189 (471)
T ss_pred hHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcC--------CCceeeecCCCCCccccccee------
Confidence 3455566666555432 3678999999999999998887776 778999999999987322211
Q ss_pred chhhhhccCCCeeEeCCC--CCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
..++..+|+. ..... .-+.++||.++.+. +.+++++++.. ++|+-| ...+++.|.
T Consensus 190 --------rTgveivpv~c~Ss~~f----------~itv~alE~A~~~A~~~~~kVkGvlitN-PsNPLG-~~~~~e~L~ 249 (471)
T KOG0256|consen 190 --------RTGVEIVPVHCSSSNGF----------QITVEALEAALNQARKLGLKVKGVLITN-PSNPLG-TTLSPEELI 249 (471)
T ss_pred --------ccCceEEEEEeecCCCc----------cccHHHHHHHHHHHHHhCCceeEEEEeC-CCCCCC-CccCHHHHH
Confidence 1222233322 11111 01678888887765 46788888877 788888 556778899
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCcccccc-c-c---cCCCCCc----eeeeecccCC-CccccEEEEEc-HHHHHhhhc
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGKFFA-C-E---HAEIWPD----FLCLSKGITG-GYLPLSLVMTT-DKIYNSIYY 295 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~-~---~~~~~~d----~~~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~ 295 (430)
.+.+++.+++|.+|+||+|+|-.+..+.|- + + .....+| +.++||-+|- | +|+|+++.. +.+.....+
T Consensus 250 ~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpG-fRvGviYS~ne~VvsaA~k 328 (471)
T KOG0256|consen 250 SLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPG-FRVGVIYSNNEDVVSAATK 328 (471)
T ss_pred HHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCc-eEEEEEEecChHHHHHHHH
Confidence 999999999999999999997544333221 1 1 1112344 4479998876 5 799999885 555555443
Q ss_pred cCCcccccccCCCCCCHHHHHHHHHHHHH--Hhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEee
Q psy14484 296 KNNINIFLHSHSYSGNPLACCAALATLEI--FNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII 370 (430)
Q Consensus 296 ~~~~~~~~~~~t~~~~~~~~~aa~~~l~~--~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~ 370 (430)
.++-...+...+.-....|.. +.+ .+..++++...+++.++|+++ +.|. -..+.|+|.++++.
T Consensus 329 --------mssf~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~c--l~s~AGlF~wvDlr- 396 (471)
T KOG0256|consen 329 --------MSSFGLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-GIPC--LKSNAGLFCWVDLR- 396 (471)
T ss_pred --------HhhccCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-CCce--eecCCeeEEEEEhH-
Confidence 222223344444444444421 111 233455666666777777766 3333 33567888888875
Q ss_pred cCC--ccchhHHHHHHHHHHHC-CcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 371 EDP--EQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 371 ~~~--~~~~~~a~~~~~~l~~~-Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.-- .+.+. -..+.+++..+ ++.++|+ ++|.|++++ ...++.++-+++||+..+.
T Consensus 397 ~lL~s~tfe~-El~Lw~~i~~~vklnlSpG~s~~C~EpGWFRvcFA-n~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 397 KLLTSLTFEG-ELELWERILDNVKLNLSPGSSCHCHEPGWFRVCFA-NMSEETLEVAMRRLKQFLD 460 (471)
T ss_pred HhcCcCChHH-HHHHHHHHHHhhccccCCCCcceecCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence 211 11111 14677888777 9999886 478888644 4555666669999988775
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=142.56 Aligned_cols=290 Identities=15% Similarity=0.157 Sum_probs=192.9
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhc
Q psy14484 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 158 (430)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 158 (430)
..++...+++--|..++.+++..|+.|.++..+|+.+. ||+++|+..+|+|.-++.. ..+++
T Consensus 71 nk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c~-------PGkeKIl~cPPtysMY~v~-A~iNd---------- 132 (375)
T KOG0633|consen 71 NKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVCD-------PGKEKILDCPPTYSMYVVD-AAIND---------- 132 (375)
T ss_pred cchhhhhcccCCCCCccceEEecCcHHHHHHHHhheec-------CCccceeecCCcceeEEEE-eecCC----------
Confidence 34566666666677889999999999999999999987 5889999999999755432 22233
Q ss_pred cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCE
Q psy14484 159 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~ 238 (430)
.+++.+|...+++. +.|++.+.+.. ...++++++.+ ++|++|...- .+.+++|.+.=. +++
T Consensus 133 --~eVvkvpl~pdF~l------------nvdai~evl~~-ds~iK~~F~tS-PgNPtg~~ik-~~di~KiLe~p~--ngl 193 (375)
T KOG0633|consen 133 --AEVVKVPLNPDFSL------------NVDAIAEVLEL-DSKIKCIFLTS-PGNPTGSIIK-EDDILKILEMPD--NGL 193 (375)
T ss_pred --ceEEEecCCCCccc------------cHHHHHHHHhc-cccceEEEEcC-CCCCCccccc-HHHHHHHHhCCC--CcE
Confidence 34445554444443 78888888874 35788888888 8888886654 444555555444 689
Q ss_pred EEEeccccCCCCcccccccccCCCCCcee---eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy14484 239 LIADEIAVGCGRTGKFFACEHAEIWPDFL---CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 315 (430)
Q Consensus 239 li~DEv~~g~g~~g~~~~~~~~~~~~d~~---~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 315 (430)
+++||+|..|...++ ...+..-.|+++ ||||++|-.++|+|+.+.+.++.+.+.. ...+++.+.++.
T Consensus 194 VVvDEAYidFsg~~S--~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~--------~KaPYNiS~~~s 263 (375)
T KOG0633|consen 194 VVVDEAYIDFSGVES--RMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNR--------AKAPYNISVAGS 263 (375)
T ss_pred EEEeeeeEeeccccc--cchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHh--------ccCCccccchhH
Confidence 999999998854333 222222346665 6999887633899999999998887765 345566666666
Q ss_pred HHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhcCCCeee--EeecceEEEEEEeecCCccchhHHHH-HHHHHHH
Q psy14484 316 CAALATLEIFN---KDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKK-FFVAALK 389 (430)
Q Consensus 316 ~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~-~~~~l~~ 389 (430)
.+|+++|..-+ -+..++.+-+...++...|.++ +.+.. -....+|+.++.. ++.. ..+.. +.+.+.+
T Consensus 264 ~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v---~~~~~~~gg~daNFiLi~v~-~~~n---~~akkly~q~at~ 336 (375)
T KOG0633|consen 264 VAALAALSDSNGKKMEDVRDAIVRERERLFKELTEV---PFLNDYPGGSDANFILIEVT-GGDN---GMAKKLYKQDATK 336 (375)
T ss_pred HHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcC---ccccCCCCcccccEEEEEEc-CCCc---HHHHHHHHHHHHh
Confidence 66776664211 1233444444444554555544 33321 1335677888777 4321 12334 4455567
Q ss_pred CCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 390 NELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 390 ~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+||+++.. .+++|++.. |+||.+.+++.|++++
T Consensus 337 ~gVvVRfrgse~~c~G~lRitvG---t~EentvL~k~~K~~l 375 (375)
T KOG0633|consen 337 MGVVVRFRGSEEGCKGYLRITVG---TPEENTVLMKCLKQFL 375 (375)
T ss_pred cceEEEEcCCccccceeEEEEcC---CcccchHHHHHHHhhC
Confidence 79999863 478999866 8999999999988753
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=155.76 Aligned_cols=342 Identities=14% Similarity=0.047 Sum_probs=197.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhh-cc--cc-ccCCCCC---HHHH-HHHHHHHhhcCCCCCeEEEc---CC
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LE--HV-MLSNLTH---KPVI-KLSEKLSSLTQYKLGHCFYG---SD 102 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~--~~-~~~~~~~---~~~~-~l~~~l~~~~~~~~~~v~~~---~s 102 (430)
++.|.+.++ . ..-+|.+++++...+.+ +. .. ....... +..+ ..++.++++++++++++.++ +|
T Consensus 34 ~~~l~l~~s--e---n~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~s 108 (452)
T PTZ00094 34 IEGLELIAS--E---NFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYS 108 (452)
T ss_pred HcCeeEecc--c---ccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCc
Confidence 345665554 1 13579999999887753 21 11 1111111 2223 24567888898777777677 79
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhH
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (430)
|++||..++..+.. ++++||+. ..-||............ ..... ...+...+++.+..+
T Consensus 109 gt~an~~v~~al~~--------~gd~Ii~~-~~ehg~~l~~~~~l~~~--~~~~~--~~~~~~~~~~~~~~g-------- 167 (452)
T PTZ00094 109 GSPANFAVYTALLQ--------PHDRIMGL-DLPSGGHLTHGFYTAKK--KVSAT--SIYFESLPYQVNEKG-------- 167 (452)
T ss_pred hHHHHHHHHHHhcC--------CCCEEEec-ccccCCccccccccccc--ccccc--eeeeeeeecccCCCC--------
Confidence 99999999988753 45666664 44565433221100000 00000 000111222211111
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccCC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE 261 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~~ 261 (430)
..|+++|++.+++. +++.+++ ..++.|...| +++|.++|+++|+++++|++|+ +|..+.. +.....
T Consensus 168 --~id~~~L~~~l~~~--~~~lvi~---~~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~~- 234 (452)
T PTZ00094 168 --LIDYDKLEELAKAF--RPKLIIA---GASAYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPFP- 234 (452)
T ss_pred --CcCHHHHHHHHHHh--CCCEEEE---eCCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCCC-
Confidence 12889999999753 3344444 2245777777 9999999999999999999997 5554321 111111
Q ss_pred CCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccccccCCC--CCCHHHHHHHHHHHHHHhh---cCHHHHH
Q psy14484 262 IWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY--SGNPLACCAALATLEIFNK---DNILQRI 334 (430)
Q Consensus 262 ~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~~~aa~~~l~~~~~---~~~~~~~ 334 (430)
..|++++| |++.|. ..|++++++++.+.+.. ..+.... ..+ +.++...++..++++.+.. +++.+++
T Consensus 235 -~~D~l~~S~hK~l~GP--~Gg~l~~~~~~~~~l~~--~~~~~~~-p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i 308 (452)
T PTZ00094 235 -YADVVTTTTHKSLRGP--RSGLIFYRKKVKPDIEN--KINEAVF-PGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQV 308 (452)
T ss_pred -CCcEEEcCCccCCCCC--CceEEEEecccchHHHH--hhccccC-CCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 47888766 988764 24777777765443322 0000111 111 2345566666677887643 3466788
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c------CCEEEEe
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I------GNTVYLM 404 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~------~~~lR~~ 404 (430)
.++.++|.+.|++. ..+...... ......+.+. ... .. ...+...|.+.||.+.. + ++++|++
T Consensus 309 ~~l~~~l~~~L~~~-g~~v~~~~~-~~~~~~v~~~-~~~--~~--~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis 381 (452)
T PTZ00094 309 LKNAKALAAALEKR-GYDLVTGGT-DNHLVLVDLR-PFG--IT--GSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLG 381 (452)
T ss_pred HHHHHHHHHHHHhC-CcEEecCCC-CCceEeecCC-cCC--CC--HHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEEC
Confidence 88999999888664 222211100 1122333333 211 11 24677778778999952 1 3689999
Q ss_pred CCCCCC----HHHHHHHHHHHHHHHHH
Q psy14484 405 PPYILN----KNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 405 ~~~~~t----~e~i~~~~~~l~~~l~~ 427 (430)
+++.++ ++|++++++.|.+++..
T Consensus 382 ~~~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 382 TPALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 987776 99999999999998863
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-17 Score=155.76 Aligned_cols=252 Identities=16% Similarity=0.228 Sum_probs=158.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++..+...++++.++++.+ .+.+++++||++|+..+++.+.. ++++||+..+.| +.+.....
T Consensus 49 ~r~~~p~~~~le~~la~l~g--~~~~~~~~sG~~Ai~~al~al~~--------~Gd~Vl~~~~~~-~~t~~~~~------ 111 (380)
T TIGR01325 49 SRYANPTVAAFEERIAALEG--AERAVATATGMSAIQAALMTLLQ--------AGDHVVASRSLF-GSTVGFIS------ 111 (380)
T ss_pred ecCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEecCCc-chHHHHHH------
Confidence 35667888999999999984 46788999999999999987754 556777766555 43221111
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
........++.+++.+ |+++++++++ +++++|++|. ++|+.|...+ +++|.++
T Consensus 112 --~~~~~~g~~v~~v~~~-----------------d~~~l~~~i~---~~tklV~le~-p~np~g~~~d----l~~I~~l 164 (380)
T TIGR01325 112 --EILPRFGIEVSFVDPT-----------------DLNAWEAAVK---PNTKLVFVET-PSNPLGELVD----IAALAEL 164 (380)
T ss_pred --HHHHHhCCEEEEECCC-----------------CHHHHHHhcC---CCceEEEEEC-CCCCCCeeeC----HHHHHHH
Confidence 0111122333444433 6788888775 4688999998 9999997776 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCcccc-EEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|+++|+++|+||+|+... .. ......+|+++ ++|.++|+..++ |++++++++.+.+.. .......
T Consensus 165 a~~~gi~livD~a~~~~~-~~-----~pl~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~------~~~~~g~ 232 (380)
T TIGR01325 165 AHAIGALLVVDNVFATPV-LQ-----QPLKLGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAV------YLRHTGP 232 (380)
T ss_pred HHHcCCEEEEECCCcccc-cC-----CchhhCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHH------HHHhhCC
Confidence 999999999999986321 11 11233467775 779998843455 677778887776654 1111111
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..+..+...++.+.. ..++..+.+.++.+.|++.+. +|... ...+-|.++.|++. +
T Consensus 233 ~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~-~-- 307 (380)
T TIGR01325 233 AMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA-D-- 307 (380)
T ss_pred CCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C--
Confidence 2244444444444443322 345556666666676665321 23211 12356889999886 3
Q ss_pred ccchhHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAA 387 (430)
Q Consensus 374 ~~~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 308 ---~~~~~~f~~~l 318 (380)
T TIGR01325 308 ---RAAAWKVLDAV 318 (380)
T ss_pred ---HHHHHHHHHcC
Confidence 11135566655
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-17 Score=140.97 Aligned_cols=333 Identities=13% Similarity=0.129 Sum_probs=206.1
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
...|+-|..-. -.-.++++++.++... .. -++-++...+|++..++++ +.|.-+|.+|||..|.+|++.-
T Consensus 22 ~~vDLRSDTvT----~PTdeMr~am~eA~vg-Dd---VyGeD~tt~rLE~~vA~l~--GKEAgLFv~SGTmgNllaIm~H 91 (384)
T KOG1368|consen 22 RSVDLRSDTVT----VPTDEMRRAMAEASVG-DD---VYGEDPTTNRLEQRVAELF--GKEAGLFVPSGTMGNLLAIMVH 91 (384)
T ss_pred ecccccccccc----CChHHHHHHHhhcccC-cc---cccCCccHHHHHHHHHHHh--CccceeeecccccccHHHHHHH
Confidence 45677665322 2446788888876422 11 1344566678989999998 6788999999999999999988
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC--CCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+..+ +...++-....-|-|..+..+ ...++...+ ..++.. -+++++|
T Consensus 92 c~~r------g~eii~gd~~HI~~~E~gg~s-------------~l~gv~~~tv~~e~dgt------------m~ledIe 140 (384)
T KOG1368|consen 92 CHQR------GSEIIVGDRAHIHRYEQGGIS-------------QLAGVHVRTVKNENDGT------------MDLEDIE 140 (384)
T ss_pred hcCC------CceEEeccchheeehhccChh-------------hhccceeEeeeeCCCCe------------eeHHHHH
Confidence 7631 333333222222222211111 111222222 111111 2899999
Q ss_pred HHHHhC-----CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC-cccccccccCCCCCc-
Q psy14484 193 ILLKKN-----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR-TGKFFACEHAEIWPD- 265 (430)
Q Consensus 193 ~~l~~~-----~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~-~g~~~~~~~~~~~~d- 265 (430)
..++.. .+.+.+|.+|. .+++.|..+.|.+|+.++.++|++||+.|++|-+.- |-- ....-....+.-..|
T Consensus 141 ~~ir~~~GD~H~p~T~LIclEN-T~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavasgV~vk~i~~~fDS 218 (384)
T KOG1368|consen 141 AAIRVPKGDCHMPPTKLICLEN-THNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVASGVPVKKICSAFDS 218 (384)
T ss_pred HhhcCCCCCccCCCceEEEeec-cccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHcCCCHHHHHHhhhh
Confidence 999843 23578899998 777666689999999999999999999999996532 100 000001111111123
Q ss_pred -eeeeecccCCCccccE-EEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy14484 266 -FLCLSKGITGGYLPLS-LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 343 (430)
Q Consensus 266 -~~~~sK~l~gG~~~ig-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~ 343 (430)
=++|||+|+ .|+| .+++++++++.... -|. ..++.+-..-.-+++++.+|+ +.-.....-.+++..+.+
T Consensus 219 VsiCLSKglg---APVGSViVG~k~FI~kA~~---~RK-alGGGmRQsGvLaaaaLval~--~~~~~L~~dHk~A~~lAe 289 (384)
T KOG1368|consen 219 VSICLSKGLG---APVGSVIVGSKDFIDKARH---FRK-ALGGGMRQSGVLAAAALVALD--ENVPLLRADHKRAKELAE 289 (384)
T ss_pred hhhhhhccCC---CCcccEEEccHHHHHHHHH---HHH-HhcCchhHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHH
Confidence 358999998 5777 56677887754322 011 133333323344445555554 222355566677777777
Q ss_pred HHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 344 ALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.++..++.+. .++ .+..|..+++. ...-. ++.++..+.+.|+++..+. ..+|+.++...|+++++..+..|
T Consensus 290 ~~~~~~~i~v--~v~a~etNiv~~~l~-q~~~~----~~~l~~~~~k~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~ 362 (384)
T KOG1368|consen 290 YINTPEEIRV--EVPAVETNIVNMVLC-QARLT----AEELCKFLEKNGILLMGGASRRIRIVLHHQVTDEDVEYVKSVL 362 (384)
T ss_pred Hhccccceee--ecchhhcceeeeecc-cccCC----HHHHHHHHHHCCeEEeeccccceEEEEEEecCHHHHHHHHHHH
Confidence 7775533332 333 56677777665 32221 5789999999999988763 67999999999999999999999
Q ss_pred HHHHH
Q psy14484 422 FQTFN 426 (430)
Q Consensus 422 ~~~l~ 426 (430)
++.+.
T Consensus 363 ~k~~~ 367 (384)
T KOG1368|consen 363 SKKFL 367 (384)
T ss_pred HHHHH
Confidence 65543
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=155.21 Aligned_cols=292 Identities=16% Similarity=0.145 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhh
Q psy14484 78 PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT 157 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~ 157 (430)
...++.++++++++.+.+++.+++||+++++.++.+.... ++++|++.++.|+.+. ....... .
T Consensus 113 ~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~-------~g~~Vlv~~~~~~~~~-~~~~~~~--------~ 176 (447)
T PRK00451 113 AIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRIT-------KRKKVLVSGAVHPEYR-EVLKTYL--------K 176 (447)
T ss_pred HHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc-------CCCEEEEeCccCHHHH-HHHHHHH--------H
Confidence 3345557789999878789999999999988877655421 5567887766554332 2111100 0
Q ss_pred ccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy14484 158 SLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi 237 (430)
....+.+.++.+.. +. |++++++.+. +++++++++. + +++|.+.+ +++|.++|+++|+
T Consensus 177 ~~G~~~~~v~~~~~-~~------------d~~~l~~~i~---~~t~~v~l~~-p-n~tG~v~~----l~~I~~~a~~~~~ 234 (447)
T PRK00451 177 GQGIEVVEVPYEDG-VT------------DLEALEAAVD---DDTAAVVVQY-P-NFFGVIED----LEEIAEIAHAGGA 234 (447)
T ss_pred hCCcEEEEecCCCC-CC------------CHHHHHHhcC---CCeEEEEEEC-C-CCCCeeCC----HHHHHHHHHHCCC
Confidence 01123344544332 22 8899998885 5688888887 7 67888877 9999999999999
Q ss_pred EEEE--eccccCCCCcccccccccCCCCCceeee-----ecccC-CCccccEEEEEcHHHHHhhhcc---------CC--
Q psy14484 238 HLIA--DEIAVGCGRTGKFFACEHAEIWPDFLCL-----SKGIT-GGYLPLSLVMTTDKIYNSIYYK---------NN-- 298 (430)
Q Consensus 238 ~li~--DEv~~g~g~~g~~~~~~~~~~~~d~~~~-----sK~l~-gG~~~ig~~~~~~~~~~~~~~~---------~~-- 298 (430)
++++ |.+..|. .. .. .....|++++ ||.+. +| +++|++++++++.+.+... ++
T Consensus 235 ~~iv~~d~~~~g~--~~---~~--~~~~~D~~~~s~~k~~~~~~~~G-pg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 306 (447)
T PRK00451 235 LFIVGVDPVSLGL--LK---PP--GEYGADIVVGEGQPLGIPLSFGG-PYLGFFATRKKLVRQMPGRLVGETVDADGKRG 306 (447)
T ss_pred EEEEEcChHHhcc--CC---Cc--ccCCCCEEEECCCcCCCCCCCCC-CCchHHHhhHHHHhhCCCCEeeeecccCCCee
Confidence 9998 6543222 11 01 1234677754 55533 34 5899999999887764210 00
Q ss_pred ----------cccccccC-CCCCCH-HHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE
Q psy14484 299 ----------INIFLHSH-SYSGNP-LACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMI 363 (430)
Q Consensus 299 ----------~~~~~~~~-t~~~~~-~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~ 363 (430)
...+.+.. +.+.+. +...++..+++.+.+ ++..+++.++.+++.++|+++ +++... .+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~---~g~~~~--~~~~ 381 (447)
T PRK00451 307 FVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI---GGVELF--DGPF 381 (447)
T ss_pred eEeeccccccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc---CCEEec--CCCe
Confidence 00111111 111121 111233334443322 345567777888888888765 322222 2222
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHCCcEEe----ec----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 364 ~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.+... +-.. . +.+++++|.++|+... +. .+++|++++..+|+++++++++.|++++
T Consensus 382 ~~~~~v-~~~~-~---~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 382 FNEFVV-RLPK-P---AEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred EEEEEE-ecCC-C---HHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 221111 1000 1 3679999999987632 21 3589999999999999999999998764
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-16 Score=146.97 Aligned_cols=311 Identities=12% Similarity=0.071 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHhh-ccccccCC----CCCHHHHHHHHHHHhhcCCCCCeE--EEcCCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 53 SYINKALKNQLNK-LEHVMLSN----LTHKPVIKLSEKLSSLTQYKLGHC--FYGSDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 53 p~v~~a~~~~~~~-~~~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~v--~~~~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
+.+.+++.+.+.+ ++...... ......+++.++++++++.+++++ +||+||||||..|+.+++... +
T Consensus 37 ~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~------~ 110 (374)
T PLN03032 37 YGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF------P 110 (374)
T ss_pred hHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC------C
Confidence 4556666665542 22211111 123667888899999998777776 999999999999999887642 2
Q ss_pred CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
+ .+++.+...|-+..-++...+ .+...++.+...+. |+++|++++++....+.+|
T Consensus 111 ~-~~vi~s~~~H~Sv~kaa~~lg------------~~~~~V~~d~~g~i------------d~~~L~~~i~~~~~~~~lv 165 (374)
T PLN03032 111 D-GILYASRESHYSVFKAARMYR------------MEAVKVPTLPSGEI------------DYDDLERALAKNRDKPAIL 165 (374)
T ss_pred C-cEEEeCCCceeHHHHHHHHcC------------CCCeEeeeCCCCcC------------cHHHHHHHHHHcCCCCEEE
Confidence 2 366777777766443332222 22345555544444 9999999998643457788
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcC-----CEEEEeccccCCCCcc-----cccccccCCCCCceeeee--ccc
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYN-----IHLIADEIAVGCGRTG-----KFFACEHAEIWPDFLCLS--KGI 273 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g-----i~li~DEv~~g~g~~g-----~~~~~~~~~~~~d~~~~s--K~l 273 (430)
++.. .++++|.+.| +++|.++|+++| +++++|.+|.|+ ... ..+.+ ....|.++++ |.+
T Consensus 166 v~ta-gtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~-~~p~~~~~~~~~~---~~~vDSis~s~HK~~ 236 (374)
T PLN03032 166 NVNI-GTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL-MMPFVSRAPEVTF---RKPIGSVSVSGHKFL 236 (374)
T ss_pred EEEe-cCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh-hhhccCCCcccCC---CcCCcEEEECccccc
Confidence 8888 9999999999 999999999997 589999999754 211 01111 1236888887 544
Q ss_pred CCCccccEEEEEcHHHHHhhhccCCccccc-ccCCCCCC--HHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHc
Q psy14484 274 TGGYLPLSLVMTTDKIYNSIYYKNNINIFL-HSHSYSGN--PLACCAALATLEIFNKDNI---LQRISQDMKKITKALTS 347 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~-~~~t~~~~--~~~~~aa~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~ 347 (430)
+.. .++|+++.+++..+.+... ...+. ...|..++ ....++.+.+|..+..+++ .++..++++++.++|++
T Consensus 237 g~P-~g~G~ll~r~~~~~~~~~~--~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~ 313 (374)
T PLN03032 237 GCP-MPCGVALTRKKHVKALSQN--VEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTE 313 (374)
T ss_pred CCC-cCeEEEEEEchhhHhhccC--CcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 323 6789999998776554321 00000 01233333 2345566677776655544 45567788888888876
Q ss_pred hhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 348 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 348 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
. .... ...+..+.+.|..+ . . .. ..+|..+....+.+++.+...++++.+|++++.|++
T Consensus 314 ~-~~~~--~~~p~~~~V~f~~~-~-----~---~~-----~~~~w~l~~~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 314 A-GLTC--RLNELSSTVVFERP-M-----D---EA-----FIKKWQLACEGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred C-CCcE--EECCCceEEEEcCC-C-----c---Hh-----HhheeeecccCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 4 2221 22233333333222 1 1 11 225666666667888888877899999999998865
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-16 Score=152.10 Aligned_cols=297 Identities=12% Similarity=0.021 Sum_probs=178.4
Q ss_pred CCCCHHHHHHHHHHHhhccccccCCC------CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 49 GHSNSYINKALKNQLNKLEHVMLSNL------THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
|..++.+++++.+.+........... ..+..+++++.++++++.++++++|++|+++|++.+++.+.....
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~--- 84 (353)
T TIGR03235 8 TPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGE--- 84 (353)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcc---
Confidence 44688999999988754211111000 114467888999999988888999999999999999887754210
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
.++++.|++ ....|.......... .....++..++.+.+... |++++++.++ +++
T Consensus 85 ~~g~~~vi~-~~~~~~s~~~~~~~~---------~~~G~~v~~v~~~~~~~~------------d~~~l~~~l~---~~~ 139 (353)
T TIGR03235 85 QKGKKHIIT-SAIEHPAVLEPIRAL---------ERNGFTVTYLPVDESGRI------------DVDELADAIR---PDT 139 (353)
T ss_pred cCCCCeeeE-cccccHHHHHHHHHH---------HhcCCEEEEEccCCCCcC------------CHHHHHHhCC---CCC
Confidence 012344554 444444422221110 111223344554432222 7889998885 467
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCcccc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPL 280 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~i 280 (430)
++++++. +++++|.+.+ +++|.++|+++|+++|+|++|+ +|... ++.....+|++++| |.++. ..+
T Consensus 140 ~lv~~~~-~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~----~~~~~~~~D~~~~s~~K~~gp--~g~ 207 (353)
T TIGR03235 140 LLVSIMH-VNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT----VDLSADRIDLISCSGHKIYGP--KGI 207 (353)
T ss_pred EEEEEEc-ccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc----ccccccCCCEEEeehhhcCCC--Cce
Confidence 8888888 9999998888 9999999999999999999987 54321 22223357888877 96432 348
Q ss_pred EEEEEcHHHHHh--hhc---c-CCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 281 SLVMTTDKIYNS--IYY---K-NNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 281 g~~~~~~~~~~~--~~~---~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
|+++++++.... +.+ + +..+.+ . ..+.+.....+..++++++.. ++..++++++.+++++.|++. ...
T Consensus 208 g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~-g~~ 283 (353)
T TIGR03235 208 GALVIRKRGKPKAPLKPIMFGGGQERGL-R--PGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL-GVK 283 (353)
T ss_pred EEEEEccCcccccccCceeeCCCCcCcc-c--cCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-CeE
Confidence 999998874322 111 0 000001 1 123345555556667765542 456677888888888888653 221
Q ss_pred CeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec
Q psy14484 353 KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 397 (430)
Q Consensus 353 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~ 397 (430)
.+... .....+..+.+. . . . ...+.+.|.+ +|.+.++
T Consensus 284 ~~~~~~~~~~~i~~~~~~-~-~---~--~~~v~~~L~~-~i~v~~g 321 (353)
T TIGR03235 284 LNGDPAETIPHILNFSID-G-V---N--SEALIVNLRA-DAAVSTG 321 (353)
T ss_pred EeCCcccccCCEEEEEeC-C-c---C--HHHHHHHHhC-CeEEEch
Confidence 11111 112334445443 2 1 1 3567777854 8888765
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-16 Score=161.63 Aligned_cols=309 Identities=14% Similarity=0.139 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCch----HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGA----SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgt----eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+++++|++++ +.++|.|+++++ +|+..+++.... .+|+.. .++++.+.+.||+........+
T Consensus 568 ~~~~~~r~~la~i~--g~~~v~f~pnaga~ge~a~~~vi~~~~~---~~Gd~~-r~~vli~~~aH~sn~a~a~~~G---- 637 (993)
T PLN02414 568 EMFEDLGDLLCEIT--GFDSFSLQPNAGAAGEYAGLMVIRAYHL---SRGDHH-RNVCIIPVSAHGTNPASAAMCG---- 637 (993)
T ss_pred HHHHHHHHHHHHHh--CCCeEEEcCCCcHHHHHHHHHHHHHHHh---ccCCCC-CCEEEeCCCcCccCHHHHHHCC----
Confidence 56678999999999 459999999888 777777776643 334322 3466667899998665444322
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+++.++.+.+... |+++|+++++++.+++++|++.. +++.+|...+ +++|.++|
T Consensus 638 --------~~vv~v~~d~~G~v------------Dle~L~~~i~~~~~~ta~V~vt~-pSn~gg~e~~----I~eI~~ia 692 (993)
T PLN02414 638 --------MKIVVVGTDAKGNI------------NIEELRKAAEAHKDNLAALMVTY-PSTHGVYEEG----IDEICDII 692 (993)
T ss_pred --------CEEEEeccCCCCCc------------CHHHHHHHHhccCCCeEEEEEEC-CCccccccch----HHHHHHHH
Confidence 34455655433333 89999999986656899999988 8888998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccC----CCccccEEEEEcHHHHHhhhccC--Cc----c
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYKN--NI----N 300 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~----gG~~~ig~~~~~~~~~~~~~~~~--~~----~ 300 (430)
+++|+++++|.++. .+-.+ .........|+++++ |.++ +|+-.+|.+.+++++...+-... .. +
T Consensus 693 h~~Galv~vDgAq~-~a~~~---l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~ 768 (993)
T PLN02414 693 HDNGGQVYMDGANM-NAQVG---LTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPR 768 (993)
T ss_pred HHcCCEEEEEecCH-HhccC---cCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCccc
Confidence 99999999999986 21111 111123457888874 7654 34356999999998765543210 00 0
Q ss_pred cccc--cCCCC----CCHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEE--EE
Q psy14484 301 IFLH--SHSYS----GNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAF--DV 368 (430)
Q Consensus 301 ~~~~--~~t~~----~~~~~~~aa~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~--~~ 368 (430)
.... .+|.. ++.+.+.+++..++.+..+.+ .++...++.|++++|++. .+.. ...+.| .+.-+ .+
T Consensus 769 r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~--~~~~-~~~~~~~~~hEfv~~~ 845 (993)
T PLN02414 769 PEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH--YPVL-FRGKNGTCAHEFIIDL 845 (993)
T ss_pred ccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh--CCcc-ccCCCCCeeeeEEEec
Confidence 0010 12322 334555566666777666666 566777889999999763 2211 111111 12111 22
Q ss_pred eecCCccchhHHHHHHHHHHHCCcEEe----ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 369 IIEDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 369 ~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
. .-+......+..+.++|.+.|+... |..+.+|++|....+++|||+++++|.++..+.
T Consensus 846 ~-~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~e~ 908 (993)
T PLN02414 846 R-PFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEI 908 (993)
T ss_pred c-ccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 1 1110000113679999999888754 346789999999999999999999998887764
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-16 Score=153.60 Aligned_cols=336 Identities=14% Similarity=0.079 Sum_probs=192.2
Q ss_pred CCCHHHHHHHHHHHhhccccc-----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 50 HSNSYINKALKNQLNKLEHVM-----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
|-+|.|.+++.+.....++.. ...+..+...+++++++++++.+ ...++.++|+.+...++.+++.....+|..
T Consensus 81 ~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~-~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~ 159 (481)
T PRK04366 81 KYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMD-AVTLQPAAGAHGELTGLLMIRAYHEARGDT 159 (481)
T ss_pred CCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC-ceEEEeCcHHHHHHHHHHHHHHHhhccCcC
Confidence 457888888877522212111 11122366778889999998644 233444566666655444444322233322
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 204 (430)
++++|++.++.|+.+... .... ..+.+.++.+.++.. |+++|++.+. +++++
T Consensus 160 ~~~~Vlv~~~~hp~~~~~-~~~~------------G~~vv~v~~~~~~~~------------D~e~L~~~i~---~~t~~ 211 (481)
T PRK04366 160 KRTEVIVPDSAHGTNPAS-AAMA------------GFKVVEIPSNEDGLV------------DLEALKAAVG---EDTAA 211 (481)
T ss_pred CCCEEEEcCCccHhHHHH-HHHc------------CCEEEEeecCCCCCc------------CHHHHHhhcc---cCCeE
Confidence 456788888766554332 2211 223344544322222 8899998885 45666
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccC----CCcc
Q psy14484 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYL 278 (430)
Q Consensus 205 vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~----gG~~ 278 (430)
|++.. ++ ++|.+. ..+++|.++|+++|+++|+|+++. .+..|.. ... ....|+++++ |.++ +|+.
T Consensus 212 V~v~~-Pn-~tG~~~---~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~~-~~~--~~GaD~~~~~~hK~l~~P~g~Ggp 282 (481)
T PRK04366 212 LMLTN-PN-TLGLFE---RNILEIAEIVHEAGGLLYYDGANL-NAILGKA-RPG--DMGFDVVHLNLHKTFSTPHGGGGP 282 (481)
T ss_pred EEEeC-CC-Cccccc---hHHHHHHHHHHHcCCEEEEEecCh-hhhcccC-Ccc--ccCCCEEEEechhhcCCCCCCCCC
Confidence 66654 55 566541 239999999999999999999985 2222211 112 2346888764 8765 2324
Q ss_pred ccEEEEEcHHHHHhhhcc-----CC--------cccccccCCCCCCHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHH
Q psy14484 279 PLSLVMTTDKIYNSIYYK-----NN--------INIFLHSHSYSGNPLACCAALATLEIFNKDNIL---QRISQDMKKIT 342 (430)
Q Consensus 279 ~ig~~~~~~~~~~~~~~~-----~~--------~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~---~~~~~~~~~l~ 342 (430)
.+|++++++++.+.+... +. .......-.++++.+.+.++...+..+..+++. ++..++.++++
T Consensus 283 ~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~ 362 (481)
T PRK04366 283 GSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLK 362 (481)
T ss_pred CeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888777655310 00 000001112233445555666666666555443 45566788999
Q ss_pred HHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee------cCCEEEEeCCCCCCHHHHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------IGNTVYLMPPYILNKNEIQH 416 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~------~~~~lR~~~~~~~t~e~i~~ 416 (430)
++|+++ ...... ...-..+.+... .-.. ....+.++.++|.++|+.... ..+.+|++++..+|++|||.
T Consensus 363 ~~L~~~--~~~~~~-~~~~~~~~~~~~-~~~~-~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~ 437 (481)
T PRK04366 363 ARLKDI--YDLPYD-RPCMHEFVLSGK-KLKE-TGVRTLDIAKRLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDA 437 (481)
T ss_pred HHhHhh--CcccCC-CCeeEEEEEECc-cccc-cCCCHHHHHHHHHHCCccCCccccccccCCeEEEcccCCCCHHHHHH
Confidence 999875 111111 000011112111 0000 000146799999999988652 14689999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy14484 417 MTSAIFQTFNEV 428 (430)
Q Consensus 417 ~~~~l~~~l~~~ 428 (430)
+++.|+++..++
T Consensus 438 l~~~l~~i~~~~ 449 (481)
T PRK04366 438 FIAAMKQIAEEA 449 (481)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=153.92 Aligned_cols=289 Identities=13% Similarity=0.111 Sum_probs=178.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
++.++...+|++.++++.+ .+..++++||+.|+..++..+.. +++.||+.++.|.+..........
T Consensus 57 r~~~pt~~~Le~~lA~l~G--~~~al~~~sG~~Ai~~~l~al~~--------~Gd~Vv~~~~~y~~~~~~~~~~~~---- 122 (386)
T PRK06767 57 RLGNPTVKLFEERMAVLEG--GEEALAFGSGMAAISATLIGFLK--------AGDHIICSNGLYGCTYGFLEVLEE---- 122 (386)
T ss_pred CCCCcchHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEcCCcHHHHHHHHHHHHh----
Confidence 5667778899999999995 45678889999999988876654 567888877766443221111110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
....+..+++.+ |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 123 -----~~gi~~~~~~~~-----------------d~~~l~~~i~---~~tklV~les-p~NptG~v~d----l~~I~~la 172 (386)
T PRK06767 123 -----KFMITHSFCDME-----------------TEADIENKIR---PNTKLIFVET-PINPTMKLID----LKQVIRVA 172 (386)
T ss_pred -----hcCeEEEEeCCC-----------------CHHHHHHhhC---cCceEEEEeC-CCCCCceecC----HHHHHHHH
Confidence 011122233222 6788888885 4678999998 9999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+||+|+ .+..+.. . ....|++ +++|.++|...++ |+++++++.++.+.. ..+. ..++.
T Consensus 173 ~~~g~~vivD~a~a-~~~~~~p--l---~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~--~~~~-~~g~~-- 241 (386)
T PRK06767 173 KRNGLLVIVDNTFC-SPYLQRP--L---ELGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIR--PMRK-DIGGI-- 241 (386)
T ss_pred HHcCCEEEEECCCc-ccccCCc--h---hcCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHH--HHHH-HhCCC--
Confidence 99999999999986 2111111 1 1234665 5669998733565 788888877655432 0000 11121
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCee---------eEeecceEEEEEEeecCCccchhHH
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII---------NFRQKGMIWAFDVIIEDPEQIETFS 380 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~a 380 (430)
.+++.+..+...|+.+ +...++.++++.++.+.|++.+....+. ..++.|.++.|++. .+ ...+
T Consensus 242 ~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~-~~----~~~~ 314 (386)
T PRK06767 242 MAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIK-GG----KEET 314 (386)
T ss_pred CCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEc-CC----HHHH
Confidence 2455444444444322 2244666778888888887653222111 12356788888886 42 1124
Q ss_pred HHHHHHHHHCCcEEe----------e------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 381 KKFFVAALKNELLLR----------P------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 381 ~~~~~~l~~~Gv~~~----------~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+|.+.|...++.++ | ..+.+||++.+. +.+.+++.|+++|+.
T Consensus 315 ~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE----~~~dl~~dl~~al~~ 385 (386)
T PRK06767 315 QAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGLE----SWEDIVSDLEQALKK 385 (386)
T ss_pred HHHHHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence 678888765554332 1 025688876644 466667777776654
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-16 Score=149.94 Aligned_cols=287 Identities=12% Similarity=0.153 Sum_probs=172.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++++ .+.+++++||++|+..++..+.. +++.||+..+.|.+.....
T Consensus 57 r~~~p~~~~le~~la~l~g--~~~~v~~ssG~~Ai~~al~al~~--------~Gd~Vi~~~~~y~~t~~~~--------- 117 (390)
T PRK08133 57 RFTNPTVTMFQERLAALEG--AEACVATASGMAAILAVVMALLQ--------AGDHVVSSRSLFGSTVSLF--------- 117 (390)
T ss_pred CCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEccCcchhHHHHH---------
Confidence 4567788999999999984 46789999999999999887754 5678888777775532211
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.........++.+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 118 ~~~~~~~G~~v~~vd~~-----------------d~~~l~~~i~---~~tklV~ie~-p~NptG~v~d----l~~I~~la 172 (390)
T PRK08133 118 EKIFARFGIETTFVDLT-----------------DLDAWRAAVR---PNTKLFFLET-PSNPLTELAD----IAALAEIA 172 (390)
T ss_pred HHHHHHcCcEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCCcCC----HHHHHHHH
Confidence 11111122333444432 6788888885 5788999998 9999998876 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+|+++... ..... ....+|++ +++|.+++...++ |++++++++++.+.. ........
T Consensus 173 ~~~gi~livD~t~~~~-~~~~p-----l~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~------~~~~~g~~ 240 (390)
T PRK08133 173 HAAGALLVVDNCFCTP-ALQQP-----LKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFG------FLRTAGPT 240 (390)
T ss_pred HHcCCEEEEECCCccc-ccCCc-----hhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHH------HHHHhCCC
Confidence 9999999999997522 11111 12234665 5679998743566 566677776655442 11112223
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.++..+..+...++.+. ...++..++...+.+.|++.. .+|... ...+-|.++.|++. .+
T Consensus 241 ~~~~~a~~~l~gl~tl~--~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~-~~-- 315 (390)
T PRK08133 241 LSPFNAWVFLKGLETLS--LRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVK-GG-- 315 (390)
T ss_pred CCHHHHHHHHcccchHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEc-CC--
Confidence 34554444333333221 122334445555555555321 122211 13466889999987 42
Q ss_pred cchhHHHHHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+.+|.+.|. ..+. +..| ..+.+|+++.+. +.+.+++.|+++|+
T Consensus 316 --~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 389 (390)
T PRK08133 316 --REAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGLE----DVADIKADLARGLA 389 (390)
T ss_pred --HHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCcC----CHHHHHHHHHHHhh
Confidence 112345666543 1111 1111 025789976644 46666777776664
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-16 Score=150.47 Aligned_cols=257 Identities=12% Similarity=0.096 Sum_probs=163.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+++.+...+|++.++++.+ .+.+++++||++|+..++..... +++.||+.++.|.........
T Consensus 60 r~~~p~~~~Le~~iA~~~g--~~~~l~~~sG~~Ai~~al~~ll~--------~Gd~Vl~~~~~y~~~~~~~~~------- 122 (400)
T PRK06234 60 RLGNPTSTEVENKLALLEG--GEAAVVAASGMGAISSSLWSALK--------AGDHVVASDTLYGCTFALLNH------- 122 (400)
T ss_pred CCCCccHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhC--------CCCEEEEecCccchHHHHHHH-------
Confidence 5567888899999999995 45789999999999988876654 567888888777554222111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
..........+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 123 --~~~~~G~~v~~vd~~-----------------d~e~l~~~i~---~~tklI~ies-P~NPtG~v~d----l~~I~~la 175 (400)
T PRK06234 123 --GLTRYGVEVTFVDTS-----------------NLEEVRNALK---ANTKVVYLET-PANPTLKVTD----IKAISNIA 175 (400)
T ss_pred --HHhhCCeEEEEECCC-----------------CHHHHHHHhc---cCCeEEEEEC-CCCCCCCcCC----HHHHHHHH
Confidence 001111222333322 7888998885 4678999998 9999997777 99999999
Q ss_pred Hhc--CCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHHhhhccCCcccccccCC
Q psy14484 233 NNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 233 ~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~t 307 (430)
+++ |+++|+||+|... ..+.. .+...|++ +++|.++|...++ |++++++++++.+... ......+
T Consensus 176 ~~~~~~i~livDea~~~~-~~~~~-----l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~----~~~~~~g 245 (400)
T PRK06234 176 HENNKECLVFVDNTFCTP-YIQRP-----LQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLF----GIKDMTG 245 (400)
T ss_pred HhcCCCCEEEEECCCCch-hcCCc-----hhhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHH----HHHHhcC
Confidence 997 9999999998732 22211 12235665 5679998732454 8889998887766530 0011122
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
...++..+..+...|+.+ +...++..++..++.+.|+.... +|.+. ...+.|.++.|++. .+
T Consensus 246 ~~l~p~~a~l~~~~l~tl--~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~-~~ 322 (400)
T PRK06234 246 SVIGPFEAFLIIRGMKTL--QIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELK-GG 322 (400)
T ss_pred CCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEec-Cc
Confidence 344566555555444432 23445566677777777764311 22211 12356888899887 42
Q ss_pred CccchhHHHHHHHHHHHC
Q psy14484 373 PEQIETFSKKFFVAALKN 390 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~ 390 (430)
.+.+.+|.+.|.--
T Consensus 323 ----~~~~~~f~~~l~~~ 336 (400)
T PRK06234 323 ----VEEGKVVMNNVKLA 336 (400)
T ss_pred ----HHHHHHHHHhCCcc
Confidence 11245677776533
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-16 Score=147.79 Aligned_cols=236 Identities=15% Similarity=0.186 Sum_probs=150.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++...+|++.++++.+. +..++++||++|+..++. +.. ++++||+.++.|++.......
T Consensus 47 ~r~~~pt~~~le~~la~l~g~--~~~~~~~sG~~ai~~~~~-ll~--------~Gd~Vl~~~~~y~~t~~~~~~------ 109 (366)
T PRK08247 47 SRTGNPTRGVLEQAIADLEGG--DQGFACSSGMAAIQLVMS-LFR--------SGDELIVSSDLYGGTYRLFEE------ 109 (366)
T ss_pred cCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHH-HhC--------CCCEEEEecCCcCcHHHHHHH------
Confidence 467788899999999999953 456889999999987764 332 567899999999874221111
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.......+..+++.. |+++++++++ +++++|++|. ++|+.+.... +++|.++
T Consensus 110 ---~~~~~G~~v~~vd~~-----------------d~~~l~~~i~---~~tklv~le~-P~NP~~~~~d----l~~I~~l 161 (366)
T PRK08247 110 ---HWKKWNVRFVYVNTA-----------------SLKAIEQAIT---PNTKAIFIET-PTNPLMQETD----IAAIAKI 161 (366)
T ss_pred ---HhhccCceEEEECCC-----------------CHHHHHHhcc---cCceEEEEEC-CCCCCCcHHH----HHHHHHH
Confidence 011112233444332 7888998885 4678888887 7777765444 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|... ..... .....|++ ++||.++| +-...|+++++ +++.+.+.. .....+
T Consensus 162 a~~~g~~lIvD~t~~~~-~~~~p-----~~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~------~~~~~g 229 (366)
T PRK08247 162 AKKHGLLLIVDNTFYTP-VLQRP-----LEEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAY------YQNAAG 229 (366)
T ss_pred HHHcCCEEEEECCCccc-cccCc-----hhcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHH------HHHhcC
Confidence 99999999999998411 11111 11234554 68899986 22467778876 566665543 112223
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee--EeecceEEEEEEe
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFDVI 369 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~g~~~~~~~~ 369 (430)
...++..+..+...|+.+. ...++.+++.+.+.+.|++. |.+.. .++.|.++.|++.
T Consensus 230 ~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~~---p~v~~v~~P~~gg~~sf~~~ 288 (366)
T PRK08247 230 AVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNEQ---PGVTDVLYPGRGGMLSFRLQ 288 (366)
T ss_pred CCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhC---CCeeEEecCCcCcEEEEEEC
Confidence 3445655555544554332 23344566666666766643 54433 4557889998875
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-16 Score=151.69 Aligned_cols=295 Identities=14% Similarity=0.142 Sum_probs=178.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++....|++.|+++. +.+.+++++||++|+..++..+.. +++.|++..+.|.++.......
T Consensus 78 ~R~~~Pt~~~Le~~lA~le--g~~~~iv~~sG~~Ai~~~l~al~~--------~Gd~Vv~~~p~Y~~~~~~~~~~----- 142 (427)
T PRK07049 78 SRFNHPNSEIVEDRLAVYE--GAESAALFSSGMSAIATTLLAFVR--------PGDVILHSQPLYGGTETLLAKT----- 142 (427)
T ss_pred cCCCCcCHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHHHHHhC--------CCCEEEEcCCCcccHHHHHHHH-----
Confidence 3567788889999999998 456799999999999999987775 6688999999998874332110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~ 229 (430)
+.....+ .+.+++. .|++++++.+.+. .+++++|+++. ++|++|.+.+ .+.+.+|.
T Consensus 143 ----l~~~Gi~--~v~~~~~--------------~d~~~l~~~l~~~~~~~~tklv~les-P~NPtg~v~d-~~~l~~la 200 (427)
T PRK07049 143 ----FRNFGVG--AVGFADG--------------LSEAAIGAAAEAAAAKGRVSLILIET-PANPTNSLVD-VAAVRRVA 200 (427)
T ss_pred ----HHhcCcE--EEEEeCC--------------CCHHHHHHHHHhhccCCCceEEEEEC-CCCCCCcccC-HHHHHHHH
Confidence 0001111 1222211 1566777666532 24688999998 9999996654 44444444
Q ss_pred HHHHh---cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCccccc
Q psy14484 230 EICNN---YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFL 303 (430)
Q Consensus 230 ~l~~~---~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~ 303 (430)
+.|++ +++++|+||++.+..... .. ....|++ ++||.++| +.+++|++++++++.+.+.. ..
T Consensus 201 ~~~~~~~~~~~~vvvDety~~~~~~~---pl---~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~------~~ 268 (427)
T PRK07049 201 DAIEARQGHRPIIACDNTLLGPVFQK---PL---EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRA------LR 268 (427)
T ss_pred HHhhhcccCCCEEEEECCccccccCC---cc---ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHH------HH
Confidence 44332 799999999976442211 11 1124554 78999995 33899999999988877764 11
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCe--e----------eEeecceEEEE
Q psy14484 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKI--I----------NFRQKGMIWAF 366 (430)
Q Consensus 304 ~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~--~----------~~~~~g~~~~~ 366 (430)
.......++..+..+...|+.+. ...++..++++.+.+.|++... +|.. . ...+-|.++.|
T Consensus 269 ~~~g~~ls~~~a~l~~r~L~tl~--~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~ 346 (427)
T PRK07049 269 SAIGTQLDPHSCWMLGRSLETLV--LRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSF 346 (427)
T ss_pred HhcCCCCCHHHHHHHHcCCChHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEE
Confidence 22223456666666655555332 1234445666666676664321 2211 0 12356889999
Q ss_pred EEeecCCccchhHHHHHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHH
Q psy14484 367 DVIIEDPEQIETFSKKFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 367 ~~~~~~~~~~~~~a~~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~ 418 (430)
++. .+ .+.+.+|.+.|. ..++ +..| ..+.+||++.+ |+.+.++
T Consensus 347 ~~~-~~----~~~~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~ 417 (427)
T PRK07049 347 DIK-GG----QAAAFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI----EHPDDLI 417 (427)
T ss_pred EEc-CC----HHHHHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHH
Confidence 987 42 112355666653 1111 1111 02568997664 3566666
Q ss_pred HHHHHHHH
Q psy14484 419 SAIFQTFN 426 (430)
Q Consensus 419 ~~l~~~l~ 426 (430)
+.|+++|+
T Consensus 418 ~dl~~al~ 425 (427)
T PRK07049 418 ADLAQALD 425 (427)
T ss_pred HHHHHHHh
Confidence 66766665
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-16 Score=150.34 Aligned_cols=252 Identities=13% Similarity=0.126 Sum_probs=162.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
++..+..+++++.++++.+ .+.+++++||++|+..++..+.. +++.||+.++.|++........
T Consensus 60 r~~~p~~~~le~~lA~l~g--~~~~i~~ssG~~Ai~~~l~all~--------~GD~Vi~~~~~y~~~~~~~~~~------ 123 (398)
T PRK08249 60 RNTNPTVQAFEEKVRILEG--AEAATAFSTGMAAISNTLYTFLK--------PGDRVVSIKDTYGGTNKIFTEF------ 123 (398)
T ss_pred CCCChHHHHHHHHHHHHhC--CCeEEEeCChHHHHHHHHHHhcC--------CCCEEEEcCCchHHHHHHHHHH------
Confidence 5677888999999999984 46788889999999999887654 5678999999997642111110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 124 ---~~~~Gi~v~~vd~~-----------------d~e~l~~~i~---~~tklV~ie~-p~NPtg~v~d----l~~I~~la 175 (398)
T PRK08249 124 ---LPRMGVDVTLCETG-----------------DHEQIEAEIA---KGCDLLYLET-PTNPTLKIVD----IERLAAAA 175 (398)
T ss_pred ---HhhCCeEEEEcCCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCccCC----HHHHHHHH
Confidence 00011122222221 7889998885 4678899988 8899998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+|++|+.+. .... .....|++ +++|.++|....+ |++++++++.+.+.. ........
T Consensus 176 ~~~gi~livD~t~a~~~-~~~~-----l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~------~~~~~g~~ 243 (398)
T PRK08249 176 KKVGALVVVDNTFATPI-NQNP-----LALGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYH------YREINGAT 243 (398)
T ss_pred HHcCCEEEEECCcCccc-cCCc-----hhhCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHH------HHHhcCCC
Confidence 99999999999987331 1111 12235655 5779998732455 566777888776654 12223334
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.++..+..+...|+.+. ...++..++++.+.+.|++.. .+|++. ...+-|.++.|++. .+
T Consensus 244 ~s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~-~~-- 318 (398)
T PRK08249 244 MDPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLK-GG-- 318 (398)
T ss_pred CCHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEc-CC--
Confidence 56665655555555442 234555667777777776431 123221 12467889999987 43
Q ss_pred cchhHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAA 387 (430)
Q Consensus 375 ~~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 319 --~~~~~~f~~~l 329 (398)
T PRK08249 319 --MDTVKRLLPKL 329 (398)
T ss_pred --HHHHHHHHHhC
Confidence 12235566654
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-16 Score=149.65 Aligned_cols=317 Identities=9% Similarity=0.005 Sum_probs=190.6
Q ss_pred CHH-HHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 52 NSY-INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 52 ~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
+|+ |.+++.+...... ++.........+.++.++++++.. .++|+|++ |||++++.++..+.. +++..
T Consensus 24 ~~~~v~~a~~~~~~~~~--hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~-------~~~~~ 94 (378)
T PRK03080 24 RPGWQLEALADALLGRS--HRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLG-------ARRVD 94 (378)
T ss_pred ChHHHHHHHHhhhcccC--cCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCC-------CCcce
Confidence 567 8888876532111 111223466678888999999753 34788886 999999999887632 12333
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCC-CeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEE
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLN-KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ 207 (430)
++. .+.|+........ ..... ++..++.+..... |+++ ++. ++.|.+
T Consensus 95 vi~--~g~f~~~~~~~~~----------~~~g~~~v~~~~~~~g~~~------------d~~~----i~~----~~~V~~ 142 (378)
T PRK03080 95 HLA--WESFGSKWATDVV----------KQLKLEDPRVLEADYGSLP------------DLSA----VDF----DRDVVF 142 (378)
T ss_pred EEE--eCHHHHHHHHHHH----------hhcCCCCceEeccCCCCCC------------CHhh----cCC----CCCEEE
Confidence 333 4566653221000 00112 3344443321111 4444 221 234667
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEE
Q psy14484 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMT 285 (430)
Q Consensus 208 ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~ 285 (430)
.. +.+.+|...| +++|.+ +++|+++++|.+|+ +|.. .+.++ . .|++++| |.|++. ..+|.+++
T Consensus 143 ~h-~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~--pidv~--~--iD~~~~s~~K~l~~P-~G~g~l~v 207 (378)
T PRK03080 143 TW-NGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL--PLDWS--K--LDVYTFSWQKVLGGE-GGHGMAIL 207 (378)
T ss_pred Ee-cCCccceecc----chhhcc--ccCCCeEEEecccc-cccC--CCCHH--H--CcEEEEehhhhCCCC-CceEEEEE
Confidence 77 8888999998 889888 88999999999987 5432 22222 2 4888777 888774 35899999
Q ss_pred cHHHHHhhhcc--CCc--------c-----c-ccccCCCC-CCHHHHHHHHHHHHHHhhc-C---HHHHHHHHHHHHHHH
Q psy14484 286 TDKIYNSIYYK--NNI--------N-----I-FLHSHSYS-GNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKA 344 (430)
Q Consensus 286 ~~~~~~~~~~~--~~~--------~-----~-~~~~~t~~-~~~~~~~aa~~~l~~~~~~-~---~~~~~~~~~~~l~~~ 344 (430)
+++..+.+.+. +.. . . .....|.+ .+..+..+..++|+.+.+. . ..++.+++.+++++.
T Consensus 208 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~ 287 (378)
T PRK03080 208 SPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDW 287 (378)
T ss_pred CHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99988765531 000 0 0 01122332 3444555556788877653 3 346667788888888
Q ss_pred HHchhcCCCee--eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHH
Q psy14484 345 LTSLITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 345 l~~l~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~ 417 (430)
|+++....... .....+.++.+.+. + .. ......+...+.++|+++..+ ++.+|++++.+++++||+.+
T Consensus 288 l~~~~~~~~~~~~~~~~s~~i~~~~~~-~-~~--~~~~~~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l 363 (378)
T PRK03080 288 AEKTPWATPLVADPATRSNTSVTLDFV-D-AQ--AAVDAAAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEAL 363 (378)
T ss_pred HHhCCCcccccCCccccCccEEEEEcC-C-ch--HHHHHHHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHH
Confidence 87663221111 11112345666554 3 00 011234666777778887643 36899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy14484 418 TSAIFQTFNEV 428 (430)
Q Consensus 418 ~~~l~~~l~~~ 428 (430)
+++|+++++++
T Consensus 364 ~~al~~~~~~~ 374 (378)
T PRK03080 364 TPWLDWAFERL 374 (378)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=143.24 Aligned_cols=301 Identities=11% Similarity=0.084 Sum_probs=178.0
Q ss_pred HHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhh-----------------------hhcCCCCCcEEEEEcCCCCC
Q psy14484 82 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-----------------------YNKGFLNKKKFICLQNSYHG 138 (430)
Q Consensus 82 l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~-----------------------~~~g~~~~~~vl~~~~~yhg 138 (430)
..+...+++++....|- ..||+.||.+++.++.... ..|..-+.++|+.++..--|
T Consensus 100 ~~~ra~~lf~a~~anvq-p~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GG 178 (493)
T PRK13580 100 AAEHAKELFGAEHAYVQ-PHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGG 178 (493)
T ss_pred HHHHHHHHhCCCccccc-CCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCC
Confidence 33556667754544444 3599999999988877520 00000016889988655544
Q ss_pred cchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcc
Q psy14484 139 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMI 218 (430)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~ 218 (430)
+..-. +...+..........+++..... .|.+++++.+.+ .+..+++.. ..+.++ .
T Consensus 179 Hlthg--------~~~n~~~~~~~~~~y~vd~~~g~-----------iD~d~l~~~~~~---~~plvii~g-~S~~~~-~ 234 (493)
T PRK13580 179 HLTHG--------FRPNISGKMFHQRSYGVDPDTGL-----------LDYDEIAALARE---FKPLILVAG-YSAYPR-R 234 (493)
T ss_pred eeecC--------cccchhhheeeeEecccCcccCc-----------cCHHHHHHHHhh---cCCEEEEeC-ccccCC-C
Confidence 42211 11111111111222222211111 288999999974 333444445 444444 6
Q ss_pred cCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC--CCCCcee--eeecccCCCccccEEEEEcHHHHHhhh
Q psy14484 219 MYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA--EIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIY 294 (430)
Q Consensus 219 ~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~--~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~ 294 (430)
.| +++|.++|+++|+++++|++|+ +|-.|.....+.. -...|++ |++|+|.|. ..|++++++++.+.+.
T Consensus 235 ~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~ 307 (493)
T PRK13580 235 VN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVFTGDEDPVPHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVD 307 (493)
T ss_pred cC----HHHHHHHHHHcCCEEEEECchh-hceeccccchhhcCCCCCCcEEEeCChhhccCC--CeEEEEecHHHHHHHh
Confidence 66 9999999999999999999997 5444321111101 1146766 467999653 3578899999888875
Q ss_pred ccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeec
Q psy14484 295 YKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 371 (430)
Q Consensus 295 ~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~ 371 (430)
. .+++.+++.. .+ ..+++..++..+.+++ +.+++.++.++|++.|++. +++.+.. .....++.+.+. +
T Consensus 308 ~---a~P~i~gg~l--~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~g-gTdshIV~V~lg-~ 378 (493)
T PRK13580 308 K---GCPLVLGGPL--PH-VMAAKAVALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTG-GTDNHLVLIDVT-S 378 (493)
T ss_pred h---CCCcccCCCc--cH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCC-CCCCCEEEEEeC-C
Confidence 4 2344443322 22 3333333455444333 6788999999999999876 3332211 123355566665 3
Q ss_pred CCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCC----CCCHHHHHHHHHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPY----ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~----~~t~e~i~~~~~~l~~~l~~ 427 (430)
.. . ....+.+.|.+.||.+.+. ...|||+++. .++++|++++++.|.+++..
T Consensus 379 ~~--~--~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 379 FG--L--TGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred HH--H--HHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 11 1 1235677899999998731 3579999888 55799999999999988764
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-15 Score=147.80 Aligned_cols=352 Identities=14% Similarity=0.144 Sum_probs=193.2
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
+....|..||||.+-.|+ ..+.++..+++..+.. .+..+....+|++.+++.+ +.+++++++||++|+
T Consensus 14 ~~l~~~~v~iDlltds~t-------~ams~~~~~a~~~gd~---~Y~~~~g~~~Leeaia~~~--g~~~vv~t~~Gt~Al 81 (431)
T cd00617 14 FLLRSEDVYIDLLTDSGT-------GAMSDYQWAAMMLGDE---AYAGSKSFYDLEDAVQDLF--GFKHIIPTHQGRGAE 81 (431)
T ss_pred EeCCCCCcCCCCCCCCCc-------HHHHHHHHHHHHhCCC---ccCCCCCHHHHHHHHHHHH--CCCeEEEcCCHHHHH
Confidence 334466788998876443 3444444444444332 1334455668888888888 557999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH-HH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-RC 186 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 186 (430)
..++++... +++.| ...++|..+.......+..+ +.++.+..... .....+. .-
T Consensus 82 ~la~~al~~--------pGD~V-~~~~~f~~~~~~i~~~Ga~p-------------v~v~i~~~~~~---~~~~pf~gni 136 (431)
T cd00617 82 NILFSILLK--------PGRTV-PSNMHFDTTRGHIEANGAVP-------------VDLVIDEAHDA---QELIPFKGNI 136 (431)
T ss_pred HHHHHHhCC--------CCCEE-ccCCcccchHHHHHhCCCEe-------------EEEeccccccc---ccccCCCCCc
Confidence 999987754 44544 45666655433222222221 22222110000 0000000 01
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----C------CCccccc
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----C------GRTGKFF 255 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g----~------g~~g~~~ 255 (430)
|++.|++.+.+. ..++++|+++. .+|++|..+.+.+.+++|.++|++||++||.|+++.- | +..+...
T Consensus 137 D~e~Le~~I~~~~~~~~~~I~v~~-p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si 215 (431)
T cd00617 137 DVAKLEKLIDEVGAENIPYIVLTI-TNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSI 215 (431)
T ss_pred CHHHHHHHhCcccCCCccEEEEEC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCH
Confidence 899999999754 23577777776 6676544778889999999999999999999999651 1 1111110
Q ss_pred c---cccCCCCCceeeee--cccCCCccccE-EEEEcH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHH-HHHHHhh
Q psy14484 256 A---CEHAEIWPDFLCLS--KGITGGYLPLS-LVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALA-TLEIFNK 327 (430)
Q Consensus 256 ~---~~~~~~~~d~~~~s--K~l~gG~~~ig-~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~-~l~~~~~ 327 (430)
. .+... ..|..++| |..+ .++| ++++++ ++++.+.... .......++++......++.+ +|+...+
T Consensus 216 ~ei~~e~~s-~sd~~~mS~~K~~~---~~~GG~i~~~d~~l~~~~~~~~--~~~~~~~~~gG~~~r~~~A~A~gL~e~~~ 289 (431)
T cd00617 216 AEIAREMFS-YADGCTMSAKKDGL---VNIGGFLALRDDELYEEARQRV--VLYEGFVTYGGMAGRDMEALAQGLREAVE 289 (431)
T ss_pred HHHHHHhhc-cCCEEEEEeecCCC---CccceEEEeCcHHHHHHHHHhc--cccCCccccccccHHHHHHHHHHHHhccc
Confidence 0 00001 13444444 3332 2444 688875 5877765300 000111123332222222333 5543212
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecC--Cccchh-HHHHHHHHHH-HCCcEEee-------
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED--PEQIET-FSKKFFVAAL-KNELLLRP------- 396 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~-~a~~~~~~l~-~~Gv~~~~------- 396 (430)
.+......+..+++.+.|++. +.|.+. +..|.+++++.. .- ...... -+..|+.+|. +.||....
T Consensus 290 ~~~l~~~~~~r~~l~~~L~~~-G~~v~~--P~Ggh~v~~d~~-~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~ 365 (431)
T cd00617 290 EDYLRHRVEQVRYLGDRLDEA-GVPIVE--PAGGHAVFIDAR-EFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAG 365 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCccC--CCcceEEEEEhH-HhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecc
Confidence 233333333457777888765 333321 233444444443 20 000000 1356776554 44777542
Q ss_pred ----c-------CCEEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Q psy14484 397 ----I-------GNTVYLMPPY-ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ----~-------~~~lR~~~~~-~~t~e~i~~~~~~l~~~l~~ 427 (430)
. -+.+|+.++. ..|.++++.+.++|..++++
T Consensus 366 ~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 366 RDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred cCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 1 1568998887 56999999999999988764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-15 Score=153.08 Aligned_cols=310 Identities=13% Similarity=0.115 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
....++++++++++ +.+.+.+-+ ||+.+..+++.+++.|+..+|.++|++||+ +.+-|++........
T Consensus 543 q~i~elq~~l~eLt--Gmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLI-p~saHgtNpasa~~~-------- 611 (954)
T PRK12566 543 AMIDELEAWLCAIT--GFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLI-PSSAHGTNPASAQMA-------- 611 (954)
T ss_pred HHHHHHHHHHHHHH--CCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEe-cccccccCHHHHHHC--------
Confidence 55678889999999 666666666 888998899999999999999877766555 457777654432222
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
..+++.++.+.+... |+++|++.++++.+++++|++.. +++.++...+ +++|.++|+++
T Consensus 612 ----GieVv~Vp~D~~G~i------------Dle~L~a~I~~~~~~laaVmiT~-Pnt~Gv~e~~----V~eI~~iah~~ 670 (954)
T PRK12566 612 ----GMRVVIVECDPDGNV------------DLDDLKAKAAAAGDRLSCLMITY-PSTHGVYEEG----IREICEVVHQH 670 (954)
T ss_pred ----CCEEEEeccCCCCCc------------CHHHHHHHhhccCCCEEEEEEEe-cCcCceecch----HHHHHHHHHHc
Confidence 233345554322222 89999999986667888888866 5555543333 99999999999
Q ss_pred CCEEEEeccccCCCCccccccccc-CCCCCceeeee--cccC----CCccccEEEEEcHHHHHhhhccC-------Cccc
Q psy14484 236 NIHLIADEIAVGCGRTGKFFACEH-AEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYKN-------NINI 301 (430)
Q Consensus 236 gi~li~DEv~~g~g~~g~~~~~~~-~~~~~d~~~~s--K~l~----gG~~~ig~~~~~~~~~~~~~~~~-------~~~~ 301 (430)
|+++++|-++. .+-. .+.. -.+..|+++++ |.++ +|+.-+|.+.+++.+...+..-+ +.+.
T Consensus 671 Galv~vDgA~~-~a~~----~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ 745 (954)
T PRK12566 671 GGQVYMDGANL-NAQV----GLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNN 745 (954)
T ss_pred CCEEEEEeeCh-hhcc----CCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCC
Confidence 99999999886 2111 1111 23457998876 8664 34345777777876655444211 0111
Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHHHchhcCCCeeeEeecce-EE--EEEEeecCCcc
Q psy14484 302 FLHSHSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLITHPKIINFRQKGM-IW--AFDVIIEDPEQ 375 (430)
Q Consensus 302 ~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~-~~--~~~~~~~~~~~ 375 (430)
...+....++.+.+.+++..++.+..+ +.+ ....++.++.++|.+. .+... ....+. +. .+.+. .-+..
T Consensus 746 ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~--~~v~~-~~~~~~~~hEfii~~~-~l~~~ 820 (954)
T PRK12566 746 GAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA--FPVLY-RGRNERVAHECILDLR-PLKAQ 820 (954)
T ss_pred CceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh--CCCCc-CCCCCCeeeEEEEEcc-ccccc
Confidence 111122223333344555666665444 332 1244788888888653 22211 111111 11 12221 11100
Q ss_pred chhHHHHHHHHHHHCCcEEe----ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 376 IETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 376 ~~~~a~~~~~~l~~~Gv~~~----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
....+..+.++|.+.|+... |..+.+|++|....+++|||+++++|+++..++
T Consensus 821 ~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 821 TGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred cCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 00113679999999888654 346799999999999999999999999988764
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-15 Score=143.46 Aligned_cols=312 Identities=16% Similarity=0.146 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFIC 131 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl~ 131 (430)
++-.+++.+.+.... ....+...++++.+++.++ .+.+++++||++|+.++++++ .. +++.||+
T Consensus 14 ~~e~~~~~~~l~~~~-----~~~g~~~~~le~~la~~~g--~~~~v~~~sgt~al~lal~al~~~--------~Gd~Viv 78 (379)
T PRK11658 14 DEELAAVKEVLRSGW-----ITTGPKNQALEQAFCQLTG--NQHAIAVSSATAGMHITLMALGIG--------PGDEVIT 78 (379)
T ss_pred HHHHHHHHHHHHcCC-----ccCCHhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHcCCC--------CCCEEEE
Confidence 555777777765432 1234567899999999994 457899999999999999876 33 5678999
Q ss_pred EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 132 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
.+++|.+........ ....++++.+..... .|+++++++++ +++++|+ | +
T Consensus 79 ~~~~~~~~~~~~~~~-------------G~~~v~vd~~~~~~~-----------~d~~~l~~~i~---~~tkav~--~-~ 128 (379)
T PRK11658 79 PSLTWVSTLNMIVLL-------------GATPVMVDVDRDTLM-----------VTPEAIEAAIT---PRTKAII--P-V 128 (379)
T ss_pred CCCcHHHHHHHHHHc-------------CCEEEEEecCCCcCC-----------cCHHHHHHhcc---cCCeEEE--E-e
Confidence 888887653322221 123344444321111 17889999885 4577766 3 3
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc-H
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-D 287 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~-~ 287 (430)
+. +|...+ +++|.++|+++|+++|+|++|+ |....|.. ....+ .++.+|+ |.+++| ..|+++.+ +
T Consensus 129 ~~-~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~g--~GG~v~~~~~ 197 (379)
T PRK11658 129 HY-AGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGRH--IGARG--TAIFSFHAIKNITCA--EGGLVVTDDD 197 (379)
T ss_pred CC-CCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCee--cCCCC--CEEEeCCCCCcCccc--CceEEEECCH
Confidence 33 565555 8999999999999999999997 33222221 11223 3677777 677664 56777764 6
Q ss_pred HHHHhhhc---cCCcc-cc--------------cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh
Q psy14484 288 KIYNSIYY---KNNIN-IF--------------LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 288 ~~~~~~~~---~~~~~-~~--------------~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
++.+.+.. .+... .+ ..+..+..+.+.++.++..|+.+ ++..++-+++.+++.+.|+++.
T Consensus 198 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~ 275 (379)
T PRK11658 198 ELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLP 275 (379)
T ss_pred HHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCC
Confidence 66655432 11000 00 00111222333333333333322 4466777778888888887652
Q ss_pred cCCCee-eEeecce--EEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-------------------c-------CCE
Q psy14484 350 THPKII-NFRQKGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------------------I-------GNT 400 (430)
Q Consensus 350 ~~~~~~-~~~~~g~--~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-------------------~-------~~~ 400 (430)
...... ....... ++.+.+. ....... .+++.+.|.++||-+.. . ...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 352 (379)
T PRK11658 276 FQPLSLPAWPHQHAWHLFIIRVD-EERCGIS--RDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERI 352 (379)
T ss_pred CccCcCCCCCCceeEEEEEEEEC-CccccCC--HHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCe
Confidence 111101 1001112 2223322 1110011 36789999999976541 0 134
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.+-++...++++++.+++.|++++
T Consensus 353 l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 353 CSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHHH
Confidence 5555566689999999999998875
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=144.76 Aligned_cols=254 Identities=15% Similarity=0.142 Sum_probs=159.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+..+...++++.++++.+. +..++++||++|+..++..+.. +++.|++..+.|++........
T Consensus 55 ~R~~~p~~~~Le~~lA~l~g~--~~~v~~~sG~~Ai~~~l~all~--------pGD~Vvv~~p~Y~~t~~~~~~~----- 119 (405)
T PRK08776 55 TRSGNPTRDLLGEALAELEGG--AGGVITATGMGAINLVLNALLQ--------PGDTLVVPHDAYGGSWRLFNAL----- 119 (405)
T ss_pred cCCCChHHHHHHHHHHHHhCC--CceEEEcCHHHHHHHHHHHHhC--------CCCEEEEccCCchHHHHHHHHH-----
Confidence 366778888999999999863 4566778889999998887754 6678999899997632111110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.......+..++.. |+++++++++ +++++|+++. ++|++|.+.. +++|.++
T Consensus 120 ----~~~~g~~v~~v~~~-----------------d~~~l~~~i~---~~tklV~l~~-P~NPtG~v~d----l~~I~~l 170 (405)
T PRK08776 120 ----AKKGHFALITADLT-----------------DPRSLADALA---QSPKLVLIET-PSNPLLRITD----LRFVIEA 170 (405)
T ss_pred ----HHhcCcEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCccCC----HHHHHHH
Confidence 00011122333321 6788888885 4678888888 8889997765 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCC-CccccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~g-G~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|..-... .. . ....|+++ .+|.++| |....|+++. ++++.+.+.. ......
T Consensus 171 a~~~gi~vIvD~a~a~~~~~-~p--l---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~------~~~~~g 238 (405)
T PRK08776 171 AHKVGALTVVDNTFLSPALQ-KP--L---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVW------WANALG 238 (405)
T ss_pred HHHcCCEEEEECCCcccccC-Cc--c---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHH------HHHhcC
Confidence 99999999999998632111 11 1 23456664 5598876 2244677766 4666665543 112223
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
...+++.+......++.+ +...++..++...+.+.|++.+. +|... ...+-|.++.|++. .+
T Consensus 239 ~~~s~~~a~l~~~gl~tl--~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~ 315 (405)
T PRK08776 239 LTGSPFDAFLTLRGLRTL--DARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE-GG 315 (405)
T ss_pred CCCCHHHHHHHHhhhCcH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc-CC
Confidence 345777776666555544 23456667777777777764321 22211 12467889999987 42
Q ss_pred CccchhHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAAL 388 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~ 388 (430)
.+.+.+|.+.|.
T Consensus 316 ----~~~~~~f~~~l~ 327 (405)
T PRK08776 316 ----EAAVRAFVDGLR 327 (405)
T ss_pred ----HHHHHHHHHhCC
Confidence 111345666553
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.2e-15 Score=135.23 Aligned_cols=288 Identities=14% Similarity=0.104 Sum_probs=188.8
Q ss_pred eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCC
Q psy14484 96 HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNIN 175 (430)
Q Consensus 96 ~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (430)
.+++|+|.+.+.+.+++.++. ..+.|++-..+|........ + .++.++|++-+..+.
T Consensus 126 diiit~G~t~~l~~~l~~~~N--------~gd~vlie~~ty~~AL~s~~-------------a--~gv~~ipv~md~~Gi 182 (472)
T KOG0634|consen 126 DIIITNGNTDGLFKVLRTLIN--------RGDHVLIEEYTYPSALQSME-------------A--LGVKIIPVKMDQDGI 182 (472)
T ss_pred eEEEecCCchHHHHHHHHhhc--------CCCceEEecccchHHHHhcc-------------c--cCceEEeccccCCCC
Confidence 799999999999999999997 67889988888864322111 1 123566666544443
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCC------CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 176 KGNSANEIARCAIFDLEILLKKNH------NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 176 ~~~~~~~~~~~d~~~le~~l~~~~------~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
+++.|++.+.... .+..+..+-|..+|++| ...+.+--++|.++|+|||+++|.||+|--+-
T Consensus 183 -----------~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG-~tls~errk~iy~LArKyDfLIVeDdpYy~Lq 250 (472)
T KOG0634|consen 183 -----------DPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTG-NTLSLERRKKIYQLARKYDFLIVEDDPYYFLQ 250 (472)
T ss_pred -----------CHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCC-CccCHHHHHHHHHHHHHcCEEEEecCccceee
Confidence 7899999998762 24667777777899999 55667778999999999999999999986221
Q ss_pred Cc---cc-----------cc---------ccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccC
Q psy14484 250 RT---GK-----------FF---------ACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 250 ~~---g~-----------~~---------~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (430)
.. +. .+ ..+..|....+-+|||-++.| +|+|++.+++.+++.+.. .....
T Consensus 251 ~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPG-lRlG~it~~~~~l~ril~------~ae~~ 323 (472)
T KOG0634|consen 251 MNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPG-LRLGWITGNSLFLKRILD------LAEVA 323 (472)
T ss_pred ccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCc-ceeEEeecCHHHHHHHhh------hccee
Confidence 11 11 00 001111112233899999999 899999999987776554 22345
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCHHHHHHH-------HHHHHHHHHHchhcCCCe-e--eEeecceEEEEEEee--cCCc
Q psy14484 307 SYSGNPLACCAALATLEIFNKDNILQRISQ-------DMKKITKALTSLITHPKI-I--NFRQKGMIWAFDVII--EDPE 374 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~-------~~~~l~~~l~~l~~~~~~-~--~~~~~g~~~~~~~~~--~~~~ 374 (430)
|.+++.+.+....++|+.+.++++.+.+.+ ++..+...|. ...|.- . -.+..|+|+++++.. .+..
T Consensus 324 t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~--kylp~~~~~~~~P~aGmFiwv~i~~~~~~~~ 401 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALD--KYLPKSVCEYHPPKAGMFIWVEIPYINFDTK 401 (472)
T ss_pred ecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCeeEEecCCcceEEEEEecccccccc
Confidence 556677777778888887666544433333 2333333332 233431 2 235567777777741 1111
Q ss_pred cc-hhHHHHHHHHHHHCCcEEeec-----------CC-EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 375 QI-ETFSKKFFVAALKNELLLRPI-----------GN-TVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 375 ~~-~~~a~~~~~~l~~~Gv~~~~~-----------~~-~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.. .+.-+.+...+.++||.+.++ .. ++|++.++ .+.|++++.+++|..++.+-
T Consensus 402 ~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~-a~~e~l~~g~~rf~~~ike~ 467 (472)
T KOG0634|consen 402 KSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAF-AEPEKLDEGIERFGSVIKEH 467 (472)
T ss_pred cchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeec-CCHHHHHHHHHHHHHHHHHH
Confidence 11 112245666788999988764 12 78888774 46679999999999998763
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=139.66 Aligned_cols=312 Identities=14% Similarity=0.074 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
++..+++.+.+..... ....+...++++.+++.+ +.+++++++||++|+..+++++.. .+++.||+.
T Consensus 11 ~~e~~a~~~~~~~~~~----~~~g~~~~~~e~~la~~~--g~~~~v~~~sgt~aL~~~l~al~~-------~pGd~Viv~ 77 (376)
T TIGR02379 11 GQELEYIAEAISEGKL----SGDGPFSRRCETWLENRT--GTKKALLTPSCTAALEMAALLLDI-------QPGDEVIMP 77 (376)
T ss_pred HHHHHHHHHHHHcCCc----cCCcHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEEC
Confidence 5557777777655321 123466788999999887 667899999999999998876521 167889999
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 212 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~ 212 (430)
+++|.+........ ....++++.+...... |++++++.++ +++++|+ | ++
T Consensus 78 ~~t~~~~~~~~~~~-------------G~~~v~vd~d~~~~~~-----------d~~~le~~i~---~~tk~Ii--p-~~ 127 (376)
T TIGR02379 78 SYTFVSTANAFVLR-------------GAKIVFVDIRPDTMNI-----------DETLIESAIT---HRTKAIV--P-VH 127 (376)
T ss_pred CCCcHHHHHHHHHc-------------CCEEEEEecCCCcCCC-----------CHHHHHHhcC---cCceEEE--E-eC
Confidence 88887653332221 1233445443221111 7888998885 4677775 3 43
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEc-H
Q psy14484 213 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 287 (430)
Q Consensus 213 ~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~-~ 287 (430)
.+|...+ +++|.++|++||+++|.|++|+ ++.. +.-...+..-|+.+|| |.++.| .+.|+++.+ +
T Consensus 128 -~~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~---~~~~~~g~~~~~~~fSf~~~K~l~~g-~~gG~v~~~~~ 197 (376)
T TIGR02379 128 -YAGVACD----MDTIMALANKHQLFVIEDAAQG-VMST---YKGRALGSIGHLGTFSFHETKNYTSG-GEGGALLINDQ 197 (376)
T ss_pred -CCCCccC----HHHHHHHHHHCCCEEEEECccc-cCCc---cCCcccCCCCCEEEEeCCCCCcCccc-CCceEEEECCH
Confidence 3565555 8999999999999999999997 4321 1111223334788888 988876 478888776 6
Q ss_pred HHHHhhhcc---CCcc-c-c----------cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc--
Q psy14484 288 KIYNSIYYK---NNIN-I-F----------LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-- 350 (430)
Q Consensus 288 ~~~~~~~~~---~~~~-~-~----------~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-- 350 (430)
++.+.+..- +... . . ..+..+-.+.+.++.+.+.|+.+ +++.++-++..++..+.|..+..
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l--~~~~~~r~~~~~~y~~~L~~~~~~~ 275 (376)
T TIGR02379 198 AFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQA--DRINQDRLATWQLYQDALKPLEEKG 275 (376)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhccCCcCC
Confidence 776655431 1110 0 0 01222233344444455555544 33555566666677777765421
Q ss_pred ---CCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------------------------CC
Q psy14484 351 ---HPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------------------------GN 399 (430)
Q Consensus 351 ---~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------------------------~~ 399 (430)
.+... .....-.++.+.+. . . .. .+++.+.|.++||...+. .+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~i~~~-~-~--~~--r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~ 349 (376)
T TIGR02379 276 IIELPSIPNGCQHNAHMFYIKLK-D-E--DD--RNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESER 349 (376)
T ss_pred eeeCCCCCCCCeeeeEEEEEEEC-C-c--CC--HHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhc
Confidence 11111 11110012233333 2 1 11 368999999999876520 12
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+.+-++...++++++.+++.|++++
T Consensus 350 ~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 350 LVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 45555556689999999999998865
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-15 Score=143.24 Aligned_cols=254 Identities=11% Similarity=0.133 Sum_probs=160.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+++++....|+++|+++.+ .+.+++++||++|+..++..... ++++|++.++.|++..........
T Consensus 47 ~R~~~pt~~~L~~~lA~l~g--~~~~i~~~sg~~Ai~~~l~~l~~--------~GD~Vl~~~~~y~~~~~~~~~~~~--- 113 (386)
T PRK08045 47 SRRGNPTRDVVQRALAELEG--GAGAVLTNTGMSAIHLVTTVFLK--------PGDLLVAPHDCYGGSYRLFDSLAK--- 113 (386)
T ss_pred eCCCCccHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHcC--------CCCEEEEcCCCcHHHHHHHHHHHh---
Confidence 46778888999999999985 35799999999999999887654 678899999999864321111110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.....+.+++.. |+++++++++ +++++|+++. ++|++|.+.+ +++|.++
T Consensus 114 ------~~gi~v~~vd~~-----------------d~e~l~~~l~---~~tklV~l~s-P~NPtG~v~d----i~~I~~i 162 (386)
T PRK08045 114 ------RGCYRVLFVDQG-----------------DEQALRAALA---EKPKLVLVES-PSNPLLRVVD----IAKICHL 162 (386)
T ss_pred ------hCCeEEEEeCCC-----------------CHHHHHHhcc---cCCeEEEEEC-CCCCCCEecC----HHHHHHH
Confidence 000111222211 6788888885 4678888898 9999997777 8999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC-ccccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG-~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|..... ... .....|++ +++|.++|. ....|++++ ++++.+.+.. .....+
T Consensus 163 a~~~g~~vivDeay~~~~~-~~p-----l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~------~~~~~g 230 (386)
T PRK08045 163 AREAGAVSVVDNTFLSPAL-QNP-----LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIG 230 (386)
T ss_pred HHHcCCEEEEECCCCcccc-CCc-----hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHH------HHHhcC
Confidence 9999999999999863311 111 12234665 577999862 245777766 4666665543 112223
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
...+++.+..+...|+.+. ...++..+++..+.+.|+..+ .+|.+. ...+-|.++.|++. .+
T Consensus 231 ~~~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~-~~ 307 (386)
T PRK08045 231 VTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-GD 307 (386)
T ss_pred CCCCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEec-Cc
Confidence 3456666665555554332 223455555666666665321 122211 12467889999987 42
Q ss_pred CccchhHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAAL 388 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~ 388 (430)
. +.+.+|.+.|.
T Consensus 308 ~----~~~~~f~~~l~ 319 (386)
T PRK08045 308 E----QTLRRFLGGLS 319 (386)
T ss_pred H----HHHHHHHHhcc
Confidence 1 11345666653
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.9e-15 Score=144.88 Aligned_cols=257 Identities=13% Similarity=0.130 Sum_probs=158.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+.++...++++.++++. +.+++++++||+.|+..++..+.. ++++|++....|.+.......
T Consensus 65 ~r~~~p~~~~le~~lA~l~--g~~~al~~~sG~~Ai~~~l~all~--------~Gd~Vl~~~~~~~~t~~~~~~------ 128 (403)
T PRK07810 65 SRYGNPTVSMFEERLRLIE--GAEACFATASGMSAVFTALGALLG--------AGDRLVAARSLFGSCFVVCNE------ 128 (403)
T ss_pred eCCCCchHHHHHHHHHHHh--CCCcEEEECChHHHHHHHHHHHhC--------CCCEEEEccCCcchHHHHHHH------
Confidence 3567788899999999998 456899999999999998877654 567788776555443211111
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
........+.+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++
T Consensus 129 ---~~~~~G~~v~~vd~~-----------------d~~~l~~ai~---~~tklV~~es-p~Nptg~v~d----l~~I~~l 180 (403)
T PRK07810 129 ---ILPRWGVETVFVDGE-----------------DLSQWEEALS---VPTQAVFFET-PSNPMQSLVD----IAAVSEL 180 (403)
T ss_pred ---HHHHcCcEEEEECCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 111112233444322 7889999885 4688999999 9999997776 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCcccc-EEEEEcHHHHH-hhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~i-g~~~~~~~~~~-~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|+ .+..... . ....|+++ ++|.++|....+ |+++++++... .+.. ......
T Consensus 181 a~~~g~~vivD~a~a-~~~~~~~--~---~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~------~~~~~g 248 (403)
T PRK07810 181 AHAAGAKVVLDNVFA-TPLLQRG--L---PLGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK------LMRHTG 248 (403)
T ss_pred HHHcCCEEEEECCCC-ccccCCh--h---hcCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHH------HHHHhC
Confidence 999999999999986 2111111 1 22357664 569998722466 67777776543 2332 111122
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCeee----------EeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~~----------~~~~g~~~~~~~~~~~ 372 (430)
...++..++.++..|+.+. ...++..+++.++.+.|++... +|.... ..+-|.++.|++. ..
T Consensus 249 ~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~-~~ 325 (403)
T PRK07810 249 PALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELD-AP 325 (403)
T ss_pred CCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc-CC
Confidence 2446666666666565442 2345555566666666654321 222111 1266889999987 42
Q ss_pred CccchhHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAA 387 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l 387 (430)
.....+.+.+|++.|
T Consensus 326 ~~~~~~~~~~f~~~l 340 (403)
T PRK07810 326 EDAAKKRAFEVLDKL 340 (403)
T ss_pred CCcCHHHHHHHHHhC
Confidence 110111235566654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=146.01 Aligned_cols=253 Identities=11% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+++++...++++.++++.+ .+.+++++||++|+..++..+.. +++.|++..++|.+.......+....
T Consensus 46 ~R~~~p~~~~le~~lA~l~g--~~~v~~~~gg~~Ai~~~l~all~--------~GD~Vl~~~p~y~~~~~~~~~~~~~~- 114 (382)
T TIGR02080 46 SRSGNPTRDLLQQALAELEG--GAGAVVTNTGMSAIHLVTTALLG--------PDDLLVAPHDCYGGTYRLLNALAKKG- 114 (382)
T ss_pred cCCCCchHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHcC--------CCCEEEEcCCCcHHHHHHHHHHHhhc-
Confidence 36778888999999999985 47899999999999999987754 66889999999976432211111100
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
...+..++.. |+++++++++ +++++|+++. ++|++|...+ +++|.++
T Consensus 115 --------~~~v~~~d~~-----------------d~~~l~~ai~---~~tklV~l~~-p~NPtG~~~d----l~~I~~l 161 (382)
T TIGR02080 115 --------CFRVLFVDQG-----------------DEQALRAALA---QKPKLVLIET-PSNPLLRVVD----IAKICHL 161 (382)
T ss_pred --------CeEEEEECCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCEecC----HHHHHHH
Confidence 0111222111 6788888885 4678888888 8999997776 8999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|..+... .. .....|++ +++|.++| +.+..|+++. ++++.+.+.. .....+
T Consensus 162 a~~~g~~vvvD~a~~~~~~~-~p-----l~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~------~~~~~g 229 (382)
T TIGR02080 162 AKAVGAVVVVDNTFLSPALQ-NP-----LALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAW------WANNLG 229 (382)
T ss_pred HHHcCCEEEEECCCcccccC-Cc-----hhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHH------HHHccC
Confidence 99999999999998632111 11 11234655 57798876 3256788776 4666665543 112223
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
...+++.+..++..++.+.. ..++..+++..+.+.|+... .+|.+. ...+-|.++.|++. ++
T Consensus 230 ~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~ 306 (382)
T TIGR02080 230 VTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK-GG 306 (382)
T ss_pred CCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec-Cc
Confidence 44566665555444543321 24455566666666665321 122211 12467889999997 42
Q ss_pred CccchhHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAA 387 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l 387 (430)
. ..+..|.+.|
T Consensus 307 ~----~~~~~f~~~l 317 (382)
T TIGR02080 307 E----QTVRRFLGGL 317 (382)
T ss_pred H----HHHHHHHHcC
Confidence 1 1134566654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.9e-16 Score=138.40 Aligned_cols=341 Identities=18% Similarity=0.149 Sum_probs=218.0
Q ss_pred EEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc--cc--CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCC
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV--ML--SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSD 102 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~--~~--~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~s 102 (430)
-+..||+.+++|.|. +.||. .++++++.+...+.+++-+ ++ ++++.+.+.++.+.|++.+ +.++.++.+-
T Consensus 88 ~~~i~G~~~~N~aS~---NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~--G~E~aivYs~ 162 (467)
T KOG1358|consen 88 HVTIDGKDVLNFASA---NFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFM--GTEDAIVYSY 162 (467)
T ss_pred ceEecCceeecccch---hhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhh--CCcceeeecc
Confidence 456799999999984 77787 5999999999999987533 11 3455578889999999999 5566666677
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhH
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (430)
|-.++..++.+.. .+..|++.+-.-+-..--.+.++. ....+ +.+
T Consensus 163 gF~ti~S~ipafs---------KrGDIi~~de~~nfaIq~GlqlSR------------S~i~~--Fkh------------ 207 (467)
T KOG1358|consen 163 GFSTIESAIPAFS---------KRGDIIFVDEAVNFAIQKGLQLSR------------STISY--FKH------------ 207 (467)
T ss_pred ccchhhhcchhhh---------ccCcEEEEehhhhHHHHHHHhhhh------------heeEE--ecC------------
Confidence 7888888888776 344455544333211111111111 11112 222
Q ss_pred HHHHHHHHHHHHHHhCC----------CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 183 IARCAIFDLEILLKKNH----------NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~----------~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
||++++|+.+.+.+ ....-+++|. +..++|.+.| +.+|.++..|+...+|+||..+ ||..|
T Consensus 208 ---ndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EG-l~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg 278 (467)
T KOG1358|consen 208 ---NDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEG-LYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLG 278 (467)
T ss_pred ---CCHHHHHHhccCcchhhhhccccccceEEEEEEe-eccCCCcccc----cHHHHHHHhhheEEEEEecccc-ccccc
Confidence 37888887776542 1145678899 9999999999 9999999999999999999988 55544
Q ss_pred c--ccccccCCCC---Cceeeee--cccCCCccccEEEEEcHHHHH--hhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 253 K--FFACEHAEIW---PDFLCLS--KGITGGYLPLSLVMTTDKIYN--SIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 253 ~--~~~~~~~~~~---~d~~~~s--K~l~gG~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
. .+..+++++. .|+++.| -+++.++ |..+++.-+.+ .+.. ..+-.+-+..|....+|..+++
T Consensus 279 ~~GrGvteH~~v~~~~iDiv~~sm~~alas~G---gFc~G~~~i~~hQrLSg------~~Y~fSAslPp~la~aa~~ai~ 349 (467)
T KOG1358|consen 279 KTGRGVTEHFGVPITDIDIVTASMETALASGG---GFCAGKSFIADHQRLSG------SGYCFSASLPPYLAGAAIKAIL 349 (467)
T ss_pred ccCccccccCCCCccceeeeeecccccccccC---ceeecceeeEeeeeccc------cceeeeccCchhhhhhHHHHHH
Confidence 4 3456777764 4677665 3555431 33444333221 1221 1111122234556667778888
Q ss_pred HHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeec--
Q psy14484 324 IFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 324 ~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
++++ ++..+.++.....+.+.|+....+.. .......++-+.+. ....+ ...+.+++...+..+|+.+...
T Consensus 350 i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v--~~~~~SPi~hl~l~-~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~ 426 (467)
T KOG1358|consen 350 IEEWNPEIVQPLRAKVAKFHAALSSNSGFIV--SGSPESPIIHLQLE-RSYGSREKEEKLLEEIVDKCIAEGVLLTRAKY 426 (467)
T ss_pred HHhhCcchhhhhhccccccchhhhcCCceEE--ecCcCCceeeeeec-ccccchHHHHHHHHHHHHHHHhhcceehhhhh
Confidence 7664 66778888888888888875321111 11122233334444 21111 1123467777777778887642
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.-+||++++..+++|||+++.+.|+++...++
T Consensus 427 ~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~~~ 467 (467)
T KOG1358|consen 427 LEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASAVL 467 (467)
T ss_pred hhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHhhC
Confidence 35899999999999999999999999887664
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=142.52 Aligned_cols=289 Identities=12% Similarity=0.114 Sum_probs=171.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
...++...++++.++++.+. +..+.++||++|+..++..+.. ++++|++..+.|.+......
T Consensus 41 r~~~p~~~~L~~~lA~l~g~--~~~v~~~sG~~ai~~~l~al~~--------~Gd~Vl~~~~~~~~ty~~~~-------- 102 (376)
T PRK06460 41 REANPTVLELTKKIVELENA--EMGVAFSSGMGAISTTALALLK--------PGNSVLVHRDMFGRSYRFFT-------- 102 (376)
T ss_pred CCCCccHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEecCCcCcHHHHHH--------
Confidence 45567788999999999864 3345558888999988887654 56788887766643211100
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
........++..++.. +.+.+++++ .+++++|+++. ++|++|.+.+ +++|.++|
T Consensus 103 -~~~~~~G~~v~~~~~~-----------------~~~~l~~~~---~~~tklV~l~s-p~NPtG~v~d----~~~I~~la 156 (376)
T PRK06460 103 -DYLKNWGVNVDASNPG-----------------SDNIIEKAK---SKRYDVVFVEN-ITNPLLRVVD----ITELSKVC 156 (376)
T ss_pred -HHHHhhCcEEEEECCC-----------------CHHHHHHhc---CCCceEEEEEC-CCCCCCcccC----HHHHHHHH
Confidence 0011111222333221 223344443 25688999999 9999997777 88999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC-ccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+||+|... ... .......|++ ++||.++|. ...+|++++++++++.+.. .....+.+
T Consensus 157 ~~~g~~vivDea~~~~-~~~-----~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~------~~~~~g~~ 224 (376)
T PRK06460 157 KENGSILIVDATFSTP-INQ-----KPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQ------MRRTLGTS 224 (376)
T ss_pred HHcCCEEEEECCcCcc-ccC-----ChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHH------HHHhcCCC
Confidence 9999999999998632 111 1111234655 688998752 1468899999998877754 11112223
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.++..+..+...++.++ ...+++.++++++.+.|++.+. +|.+. ...+.|.++.|++. .+.
T Consensus 225 ~~~~~a~~~l~~~~~l~--~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~-~~~- 300 (376)
T PRK06460 225 LDPHAAYLTLRGIKTLK--IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVN-GGQ- 300 (376)
T ss_pred CCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEc-CcH-
Confidence 34443333333344332 3456677778888887765321 22211 12467889999987 431
Q ss_pred cchhHHHHHHHHHH--HC----C----cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAAL--KN----E----LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~--~~----G----v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
..+..|.+.|. .. | ++..| .++.+|+++.+ |+.+.+++.|+++|+
T Consensus 301 ---~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 373 (376)
T PRK06460 301 ---ESALKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALS 373 (376)
T ss_pred ---HHHHHHHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence 11345666552 11 1 11111 02578997664 456666777777766
Q ss_pred Hh
Q psy14484 427 EV 428 (430)
Q Consensus 427 ~~ 428 (430)
.+
T Consensus 374 ~~ 375 (376)
T PRK06460 374 TL 375 (376)
T ss_pred hh
Confidence 43
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=142.12 Aligned_cols=279 Identities=14% Similarity=0.109 Sum_probs=170.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..++++...+|+++++++. . +++++++||++|+..++..... ++++||+.+++|+++.......
T Consensus 46 ~ry~~p~~~~Le~~lA~l~--~-~~~v~~~sG~~Ai~~~l~all~--------~Gd~Vl~~~~~y~~~~~~~~~~----- 109 (366)
T PRK07582 46 GRASNPTWRALEAALGELE--G-AEALVFPSGMAAITAVLRALLR--------PGDTVVVPADGYYQVRALAREY----- 109 (366)
T ss_pred ECCCCccHHHHHHHHHHHc--C-CCEEEECCHHHHHHHHHHHhcC--------CCCEEEEeCCCcHhHHHHHHHH-----
Confidence 3567788889999999988 3 5677778889999988876643 5688999999998764322110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
+.....++.+++..+ +. +. + .+++++|+++. ++|++|.+.+ +++|.++
T Consensus 110 ----l~~~G~~v~~v~~~~----------------~~---~~-~---~~~t~lV~le~-p~NPtg~v~d----i~~I~~~ 157 (366)
T PRK07582 110 ----LAPLGVTVREAPTAG----------------MA---EA-A---LAGADLVLAET-PSNPGLDVCD----LAALAAA 157 (366)
T ss_pred ----HhcCeEEEEEECCCC----------------hH---HH-h---ccCceEEEEEC-CCCCCCCccC----HHHHHHH
Confidence 001112334444321 11 11 2 14678888888 8888887766 9999999
Q ss_pred HHhcCCEEEEecccc-CCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccC
Q psy14484 232 CNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 232 ~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~ 306 (430)
|+++|+++++||+|. .++. .. ..+.+|++ +++|.++| +.+++|+++++ +++.+.+.. .....
T Consensus 158 a~~~g~~lvVD~t~~~~~~~--~p-----~~~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~------~~~~~ 224 (366)
T PRK07582 158 AHAAGALLVVDNTTATPLGQ--RP-----LELGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVER------WRLLA 224 (366)
T ss_pred HHHcCCEEEEECCCCCcccc--Cc-----hhcCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHH------HHHHh
Confidence 999999999999985 2211 11 12345766 56799976 22678988875 666665543 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCeee----------EeecceEEEEEEeec
Q psy14484 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIE 371 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~~----------~~~~g~~~~~~~~~~ 371 (430)
....+++.+..+...|+.+ +...++..+++..+.+.|++... +|++.. ..+.|.++.|++. +
T Consensus 225 g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~-~ 301 (366)
T PRK07582 225 GAIPGPFEAWLAHRSLGTL--GLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA-D 301 (366)
T ss_pred CCCCCHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC-C
Confidence 2233555554444444422 22336666777777777765422 222211 1246888889886 3
Q ss_pred CCccchhHHHHHHHHHHHCCcEEe-e-------------------cCCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAALKNELLLR-P-------------------IGNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~~Gv~~~-~-------------------~~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
. ....+.+.+.++... + .++.||+++++...++.|+.+.++|+
T Consensus 302 ----~----~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~ 364 (366)
T PRK07582 302 ----A----AAAERFVAASRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD 364 (366)
T ss_pred ----H----HHHHHHHHhCCcceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1 223333333344332 0 12579999998877776766666654
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=145.57 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=158.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++.+ .+...+++||+.|+..++..... ++++|++.++.|.+.........
T Consensus 61 r~~~p~~~~Le~~lA~l~G--~~~~~~~~sG~~Ai~~~l~~~l~--------~Gd~Vl~~~~~y~~~~~~~~~~~----- 125 (398)
T PRK07504 61 RYSNPTVDMFEKRMCALEG--AEDARATASGMAAVTAAILCQVK--------AGDHVVAARALFGSCRYVVETLL----- 125 (398)
T ss_pred cCCCchHHHHHHHHHHHhC--CCeeeEecCHHHHHHHHHHHHhC--------CCCEEEEcCCchhHHHHHHHHHH-----
Confidence 5667888999999999984 44556788999999888776543 56789998888876532211100
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.....++.+++. .|+++++++++ +++++|+++. ++|++|.+.+ +++|.++|
T Consensus 126 ----~~~G~~v~~vd~-----------------~d~e~l~~ai~---~~tklV~les-p~NptG~v~d----l~~I~~la 176 (398)
T PRK07504 126 ----PRYGIESTLVDG-----------------LDLDNWEKAVR---PNTKVFFLES-PTNPTLEVID----IAAVAKIA 176 (398)
T ss_pred ----hhcCeEEEEECC-----------------CCHHHHHHhcC---cCceEEEEEC-CCCCCcEecC----HHHHHHHH
Confidence 011122233321 17889998885 5788999999 9999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccE-EEEEcHHHHHh-hhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLS-LVMTTDKIYNS-IYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig-~~~~~~~~~~~-~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+||+|+.. ..... .....|++ +++|.++|...++| ++++++++++. +.. .......
T Consensus 177 ~~~gi~lvvD~a~a~~-~~~~~-----~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~------~~~~~g~ 244 (398)
T PRK07504 177 NQAGAKLVVDNVFATP-LFQKP-----LELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQD------YFRHTGP 244 (398)
T ss_pred HHcCCEEEEECCcccc-ccCCc-----hhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHH------HHHHhCC
Confidence 9999999999998722 11111 12235666 46799987336786 56666665542 221 0111222
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..++.++..|+.+. ...++..++..++.+.|++.. .+|+.. ...+-|.++.|++. ++.
T Consensus 245 ~~s~~~A~~~l~~L~tl~--~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~~ 321 (398)
T PRK07504 245 SLSPFNAWTLLKGLETLP--VRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELK-GGK 321 (398)
T ss_pred CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeC-CCH
Confidence 346666666666665442 234445566777777776432 122221 12355889999997 431
Q ss_pred ccchhHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAA 387 (430)
Q Consensus 374 ~~~~~~a~~~~~~l 387 (430)
+.+.+|.+.|
T Consensus 322 ----~~~~~~~~~l 331 (398)
T PRK07504 322 ----EAAFRFLNAL 331 (398)
T ss_pred ----HHHHHHHHhC
Confidence 1134566665
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-14 Score=151.83 Aligned_cols=313 Identities=15% Similarity=0.117 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
....++.++++++++ ++.+.+.+ +|++++..++.+++.++..+|+..+++| ..+.+-|++....+...
T Consensus 542 ~~i~e~q~~l~eltG--~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~v-lis~~aH~snp~sa~~~-------- 610 (954)
T PRK05367 542 ELIDQLEAWLAEITG--YDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVC-LIPSSAHGTNPASAVMA-------- 610 (954)
T ss_pred HHHHHHHHHHHHHHC--CCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEE-EEEchhhhhhHHHHHHC--------
Confidence 556788899999995 45565555 7778887888778777666665445444 45567777654443322
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
..+++.++.+..... |+++|++.++++..++++|++.. .+..|+...+ +++|.++|+++
T Consensus 611 ----G~~vv~v~~d~~G~i------------D~~~L~~~i~~~~~~la~V~it~-pst~G~~e~~----I~eI~~i~h~~ 669 (954)
T PRK05367 611 ----GMKVVVVACDENGNI------------DLDDLRAKAEEHADNLAAIMITY-PSTHGVFEET----IREICEIVHEH 669 (954)
T ss_pred ----CCEEEEECCCCCCCc------------CHHHHHHHHhccCCCeEEEEEEc-CCCCeeecCC----HHHHHHHHHHc
Confidence 234455555433322 89999999986545677776655 4444332355 99999999999
Q ss_pred CCEEEEeccccCCCCcccccccccCCCCCceeeee--cccC----CCccccEEEEEcHHHHHhhhccCC-cccccc-cCC
Q psy14484 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYKNN-INIFLH-SHS 307 (430)
Q Consensus 236 gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~----gG~~~ig~~~~~~~~~~~~~~~~~-~~~~~~-~~t 307 (430)
|+++++|.++.+. -.+ +. .......|+++++ |.++ +|.-.+|.+++++.+...+..... ...... .++
T Consensus 670 G~~v~VDgA~~~a-l~~--l~-~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~ 745 (954)
T PRK05367 670 GGQVYLDGANMNA-QVG--LA-RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGA 745 (954)
T ss_pred CCEEEEECcChhh-ccC--CC-ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCc
Confidence 9999999998521 111 00 1113347888877 8764 343458888888766544432100 000000 012
Q ss_pred CCCCH----HHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHHHHHchhcCCCee--eEeecceEEEEEEeecCCccchh
Q psy14484 308 YSGNP----LACCAALATLEIFNKDNILQRIS---QDMKKITKALTSLITHPKII--NFRQKGMIWAFDVIIEDPEQIET 378 (430)
Q Consensus 308 ~~~~~----~~~~aa~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~ 378 (430)
....+ +.+..++..+..+..+.+.+..+ .+++++.++|++.-...... ...... +.+.+. .-+.....
T Consensus 746 v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e--~i~~~~-~~~~~~g~ 822 (954)
T PRK05367 746 VSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHE--CILDLR-PLKESTGI 822 (954)
T ss_pred chhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccc--eEEEee-cccccCCC
Confidence 22122 23333555566666666766665 78899999987641111100 000111 122221 10100001
Q ss_pred HHHHHHHHHHHCCcEEee----cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 379 FSKKFFVAALKNELLLRP----IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 379 ~a~~~~~~l~~~Gv~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+..+.++|.+.|+.... ..+.++++|....+++|||+++++|+++..++
T Consensus 823 ~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~e~ 876 (954)
T PRK05367 823 TVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRAEI 876 (954)
T ss_pred CHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHHHH
Confidence 146799999999987653 25789999999999999999999998887764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-14 Score=146.40 Aligned_cols=312 Identities=12% Similarity=0.128 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
....++.++|+++++.+ ...++.++|+.|...++.+++.++..+|..+| .++..+.+-||+........+
T Consensus 530 q~i~elq~~l~eltGmd-~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R-~~vlip~saHgtnPasa~~~G-------- 599 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFD-AISLQPNSGAQGEYAGLRVIRSYHESRGENHR-NICLIPVSAHGTNPASAAMAG-------- 599 (939)
T ss_pred HHHHHHHHHHHHHHCCC-CcccCCchHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEEccccCcCHHHHHHCC--------
Confidence 56678999999999544 34556678888888889899988888886444 455567788988655433332
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.+++.++.+..... |+++|+++++++.+++++|++.. +++ .|.+.++ +++|.++|+++|
T Consensus 600 ----~~Vv~V~~d~~G~i------------Dle~L~~~i~~~~~~taaV~iT~-pst-~G~~e~~---I~eI~~iah~~G 658 (939)
T TIGR00461 600 ----MQVVPVNCDQDGNI------------DLVDLKNKAEQHGDELAAVMVTY-PST-HGVFEPT---IQHACDIVHSFG 658 (939)
T ss_pred ----CEEEEeccCCCCCc------------CHHHHHHHHhhcCCceEEEEEEe-CCc-Cceeccc---HHHHHHHHHHcC
Confidence 23445554433333 89999999986556889888876 666 4655544 999999999999
Q ss_pred CEEEEeccccC-CCCcccccccccCCCCCceeeee--cccC----CCccccEEEEEcHHHHHhhhcc---------CCcc
Q psy14484 237 IHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGIT----GGYLPLSLVMTTDKIYNSIYYK---------NNIN 300 (430)
Q Consensus 237 i~li~DEv~~g-~g~~g~~~~~~~~~~~~d~~~~s--K~l~----gG~~~ig~~~~~~~~~~~~~~~---------~~~~ 300 (430)
.++++|-++.. .... ...-....|+++++ |+|+ +|+-.+|.+.+++.+...+... ++..
T Consensus 659 ~~v~VDgAq~~al~~l-----~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq 733 (939)
T TIGR00461 659 GQVYLDGANMNAQVGL-----TSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSK 733 (939)
T ss_pred CEEEEEecChhhCCCC-----CCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcc
Confidence 99999999852 2110 11113457999886 8766 2335689999998765443310 0010
Q ss_pred ccc-ccCCCCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHHHchhcCCCeeeEeecce-E--EEEEEeecCC
Q psy14484 301 IFL-HSHSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLITHPKIINFRQKGM-I--WAFDVIIEDP 373 (430)
Q Consensus 301 ~~~-~~~t~~~~~~~~~aa~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~-~--~~~~~~~~~~ 373 (430)
.+. .++...++...+..++..+..+..+.+.+ ..-.++.|+.++|++. .+.+.. ...+. + +.+++. ..+
T Consensus 734 ~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--~~~l~~-~~~~~~~hEfv~~~~-~~~ 809 (939)
T TIGR00461 734 SIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--YPILFV-GTLKHVAHECILDLR-PLK 809 (939)
T ss_pred ccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--Cccccc-CCCCceeEEEEEecc-chh
Confidence 001 11223445555566777778776665543 3455788888888752 222111 00111 1 222332 111
Q ss_pred ccchhHHHHHHHHHHHCCcEEee----cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 374 EQIETFSKKFFVAALKNELLLRP----IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~Gv~~~~----~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
......+.++.++|.+.|+.... -.+.+.+.|.-..+++|||++++++.++..++
T Consensus 810 ~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~e~ 868 (939)
T TIGR00461 810 AKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKEEI 868 (939)
T ss_pred hhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 11111257899999999987532 23578888898999999999999998876654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-15 Score=142.09 Aligned_cols=293 Identities=12% Similarity=0.090 Sum_probs=173.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++...++++.++++. +.+.+++++||++|+..++..+.. +++.||+.++.|.+........
T Consensus 60 ~r~~~pt~~~Le~~lA~l~--g~~~~l~~~sgt~Ai~~~l~al~~--------~GD~Vl~~~~~y~~~~~~~~~~----- 124 (394)
T PRK07050 60 GLHATPTSLALAQRLAEIE--GGRHALLQPSGLAAISLVYFGLVK--------AGDDVLIPDNAYGPNRDHGEWL----- 124 (394)
T ss_pred CCCCCHHHHHHHHHHHHHh--CCCeEEEeccHHHHHHHHHHHHhC--------CCCEEEEecCCcccHHHHHHHH-----
Confidence 3677888899999999998 457899999999999999987754 6788999999997653211000
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.......+.+++.. +.+++++.++ +++++|++|. ++|+.|.... +++|.++
T Consensus 125 ----~~~~Gi~v~~vd~~-----------------~~~~l~~~i~---~~tklV~le~-p~Np~~~~~d----i~~I~~i 175 (394)
T PRK07050 125 ----ARDFGITVRFYDPL-----------------IGAGIADLIQ---PNTRLIWLEA-PGSVTMEVPD----VPAITAA 175 (394)
T ss_pred ----HHhcCeEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCccHhh----HHHHHHH
Confidence 01111222333221 3356777775 5688888888 8887765544 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCc-cccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~-~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+|++|+ .+.. ........|++ +++|.++||. .+.|++++ ++++.+.+.. ......
T Consensus 176 a~~~gi~livD~a~a-~~~~-----~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~------~~~~~G 243 (394)
T PRK07050 176 ARARGVVTAIDNTYS-AGLA-----FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKL------ARMRLG 243 (394)
T ss_pred HHHcCCEEEEECCcc-cccc-----cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHH------HHHhcC
Confidence 999999999999986 2111 11112234655 5789998642 45777776 5677666543 111112
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
.+.++..+..+...|+.+. ...++..+++.++.+.|++.+. +|.+. ...+.|.++.|++. .+
T Consensus 244 ~~~~~~~a~l~lr~l~tl~--~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~-~~ 320 (394)
T PRK07050 244 IGVSADDCSLVLRGLPSLQ--VRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFD-ER 320 (394)
T ss_pred CCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEEC-CC
Confidence 2334544333322222111 1223333444455555543211 12211 12355778888886 43
Q ss_pred CccchhHHHHHHHHHHHCCcEEe---------ec-------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 373 PEQIETFSKKFFVAALKNELLLR---------PI-------------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~Gv~~~---------~~-------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.. ...+.+|.+.|...++.+. |. ++.+||++.+. +.+.+++.|+++|+..+
T Consensus 321 ~~--~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE----~~~dl~~dl~~al~~~~ 393 (394)
T PRK07050 321 YS--PAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLE----DEADLIADLEQALEAAL 393 (394)
T ss_pred CC--HHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCcC----CHHHHHHHHHHHHHHhh
Confidence 21 1124677777765543211 21 25688876654 45666666666666554
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=143.19 Aligned_cols=289 Identities=12% Similarity=0.096 Sum_probs=175.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....|++.++++.+ .+.+++++||++|+..++..+.. +++.||+.++.|++........
T Consensus 46 r~gnPt~~~lE~~lA~l~g--~~~~~~~~sG~~Ai~~al~all~--------~GD~Vl~~~~~y~~t~~~~~~~------ 109 (377)
T TIGR01324 46 RRGTLTHFALQDAMCELEG--GAGCYLYPSGLAAVTNSILAFVK--------AGDHVLMVDSAYEPTRYFCDIV------ 109 (377)
T ss_pred CCCCccHHHHHHHHHHHhC--CCcEEEECcHHHHHHHHHHHhcC--------CCCEEEEcCCCcHHHHHHHHHH------
Confidence 4556778899999999984 46899999999999999987754 6788999999998753211100
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......+.++... +.+.++++++ +++++|++|. +.|++|...+ +++|.++|
T Consensus 110 ---~~~~gi~v~~~d~~-----------------~~e~l~~~i~---~~tklV~les-p~Np~g~~~d----l~~I~~la 161 (377)
T TIGR01324 110 ---LKRMGVDITYYDPL-----------------IGEDIATLIQ---PNTKVLFLEA-PSSITFEIQD----IPAIAKAA 161 (377)
T ss_pred ---HHhcCcEEEEECCC-----------------CHHHHHHhcC---CCceEEEEEC-CCCCCCcHHH----HHHHHHHH
Confidence 00111122222211 2267777775 5789999999 8898887776 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCC-ccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+|++|+ .+.... .....+|+++ ++|.++|. ..-.|+++++++.++.+.. ........
T Consensus 162 ~~~g~~livD~t~a-~g~~~~-----pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~------~~~~~G~~ 229 (377)
T TIGR01324 162 RNPGIVIMIDNTWA-AGLLFK-----PLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLRE------HSYLMGQM 229 (377)
T ss_pred HHcCCEEEEECCCc-cccccC-----ccccCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHH------HHHHhCCC
Confidence 99999999999997 332221 1233567775 57999872 2346778888877665543 11112223
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.+|..+......++.+. -..++..+++..+.+.|++-+ .+|.+. ...+.|.++.|++. ...
T Consensus 230 l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~-~~~- 305 (377)
T TIGR01324 230 VDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQ-RLT- 305 (377)
T ss_pred CCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEEC-CCC-
Confidence 34544444434444321 123444555555555554321 122211 12366889999987 421
Q ss_pred cchhHHHHHHHHHHHCCcEEe----------e--------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLR----------P--------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~----------~--------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+.+.+|.+.|.-.++.++ + .++.+||++.+. +.+.+++.|+++|+.
T Consensus 306 --~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGlE----~~~dl~~dl~~al~~ 376 (377)
T TIGR01324 306 --QKQVHAFLDHLQLFGLGYSWGGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGLE----NVDDLKADLKAGFEA 376 (377)
T ss_pred --HHHHHHHHHhCCcceEeccCCCccceeecCCCCCCHHHHHhccCCCCEEEEEeCCC----CHHHHHHHHHHHHhc
Confidence 1114567777654332211 0 124688876654 455666666666653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-15 Score=144.15 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=178.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++...+|++.++++.+ .+.+++++||+.|+..++..+.. +++.|++..+.|.+........
T Consensus 54 ~r~~~p~~~~le~~lA~l~g--~~~av~~~sG~~Ai~~~l~al~~--------~Gd~Vi~~~~~y~~t~~~~~~~----- 118 (391)
T TIGR01328 54 SRLGNPTVSNLEGRIAFLEG--TEAAVATSSGMGAIAATLLTILK--------AGDHLISDECLYGCTFALLEHA----- 118 (391)
T ss_pred eCCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEecCcchHHHHHHHHH-----
Confidence 35677888999999999994 45688999999999998877654 5677888887775442221110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.........+++.. |++++++.++ +++++|++|. ++|++|.+.+ +++|.++
T Consensus 119 ----~~~~G~~~~~vd~~-----------------d~e~l~~~i~---~~tklV~le~-p~Np~G~v~d----l~~I~~l 169 (391)
T TIGR01328 119 ----LTKFGIQVDFINMA-----------------IPEEVKAHIK---DNTKIVYFET-PANPTMKLID----MERVCRD 169 (391)
T ss_pred ----HhcCCeEEEEECCC-----------------CHHHHHHhhc---cCCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 11112223344332 6788888885 5688999998 8899997776 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccc-cEEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~-ig~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|+++|+++|+||++. .+..+.. .+...|++ +++|.+++...+ .|++++++++++.+.... .. ...+.
T Consensus 170 a~~~gi~livD~a~a-~~~~~~~-----~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~--~~--~~~g~ 239 (391)
T TIGR01328 170 AHSQGVKVIVDNTFA-TPMLTNP-----VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVG--IK--DMTGS 239 (391)
T ss_pred HHHcCCEEEEECCCc-hhccCCc-----hhcCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHH--HH--hCCCC
Confidence 999999999999986 2222211 12345665 567999872245 467778888877665300 00 11112
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..++.+...|+.+ +...++..++++++.+.|+..+. +|... ..++-|.++.|+++ .+
T Consensus 240 ~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~-~~- 315 (391)
T TIGR01328 240 VISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELK-GG- 315 (391)
T ss_pred CCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeC-CC-
Confidence 23444444444444322 22355566677777777765321 22211 12456889999987 42
Q ss_pred ccchhHHHHHHHHHHH--CCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALK--NEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~--~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+.+.+|.+.|.- .+. +..| ..+.+|+++.+ |+.+.+++.|+++|
T Consensus 316 ---~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al 388 (391)
T TIGR01328 316 ---FAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQAL 388 (391)
T ss_pred ---HHHHHHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHH
Confidence 1113456665431 111 1101 02578997664 45677777777777
Q ss_pred HH
Q psy14484 426 NE 427 (430)
Q Consensus 426 ~~ 427 (430)
+.
T Consensus 389 ~~ 390 (391)
T TIGR01328 389 DA 390 (391)
T ss_pred hh
Confidence 64
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-15 Score=140.91 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=153.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++....|++.|+++. +.+.+++++||++|+..++..+.. ++++|++.++.|.+........
T Consensus 48 ~R~~npt~~~Le~~lA~le--g~e~ivvt~gg~~Ai~~~l~all~--------~Gd~Il~~~~~y~~~~~~~~~~----- 112 (388)
T PRK08861 48 TRSGNPNRGLLEQTLSELE--SGKGAVVTNCGTSALNLWVSALLG--------PDDLIVAPHDCYGGTYRLFNTR----- 112 (388)
T ss_pred cCCCCchHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHHcC--------CCCEEEEcCCchHHHHHHHHHH-----
Confidence 4677788899999999998 468999999999999999987754 6678998888886532211110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.........+++.+ |+++++++++ +++++|+++. ++|++|.+.+ +++|.++
T Consensus 113 ----~~~~gi~v~~vd~~-----------------d~e~l~~~i~---~~tklV~les-P~NPtG~v~d----l~~I~~l 163 (388)
T PRK08861 113 ----ANKGDFKVQFVDQS-----------------DAAALDAALA---KKPKLILLET-PSNPLVRVVD----IAELCQK 163 (388)
T ss_pred ----HhcCCeEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 00001122233221 7788888885 4688999998 9999998877 8999999
Q ss_pred HHhcCCEEEEeccccC-CCCcccccccccCCCCCceee--eecccCCC-ccccEEEEEc-HHHHHhhhccCCcccccccC
Q psy14484 232 CNNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTT-DKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g-~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG-~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~ 306 (430)
|+++|+++|+||+|.. +.. .......|+++ ++|.++|. -...|+++++ +++.+.+.. .....
T Consensus 164 a~~~gi~vIvDea~~~~~~~-------~pl~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~------~~~~~ 230 (388)
T PRK08861 164 AKAVGALVAVDNTFLTPVLQ-------KPLELGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAW------WGNCI 230 (388)
T ss_pred HHHcCCEEEEECCccccccC-------CCcccCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHH------HHhcc
Confidence 9999999999999862 211 11223467775 55999873 2345667674 456554443 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeec
Q psy14484 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIE 371 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~ 371 (430)
....+|..+....-.|+.+. -..++-.+.+..+.+.|+..+ .+|+.. ...+-|.++.|++. .
T Consensus 231 G~~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~-~ 307 (388)
T PRK08861 231 GATGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFA-G 307 (388)
T ss_pred CCCCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeC-C
Confidence 22334554443333332221 112333444555555554321 122211 23467889999987 4
Q ss_pred CCccchhHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAA 387 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l 387 (430)
+ .+.+.+|.+.|
T Consensus 308 ~----~~~~~~f~~~l 319 (388)
T PRK08861 308 S----FEQLKVFVKAL 319 (388)
T ss_pred C----HHHHHHHHhcC
Confidence 2 11134566654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-14 Score=140.06 Aligned_cols=322 Identities=11% Similarity=0.023 Sum_probs=187.5
Q ss_pred CCCHHHHHHHHHHH-hhccccc---cCCCCCHHHHHHHH----HHHhhcCCCCCeEEE---cCCchHHHHHHHHHHHHhh
Q psy14484 50 HSNSYINKALKNQL-NKLEHVM---LSNLTHKPVIKLSE----KLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYW 118 (430)
Q Consensus 50 ~~~p~v~~a~~~~~-~~~~~~~---~~~~~~~~~~~l~~----~l~~~~~~~~~~v~~---~~sgteA~~~al~~~~~~~ 118 (430)
+.+|.+++++...+ .++.... +....++..+++++ ...+.++...+.+.+ .+||+.||..++.++..
T Consensus 45 ~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~~-- 122 (475)
T PLN03226 45 FTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALLQ-- 122 (475)
T ss_pred cCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhCC--
Confidence 35799999999888 5554321 11122334444432 355566544444433 47999999999998875
Q ss_pred hhcCCCCCcEEEEEcCCC-----CCcchhhhccCCCccchhhhhccCCCeeEeCCCCC--CCCCCCCChhHHHHHHHHHH
Q psy14484 119 YNKGFLNKKKFICLQNSY-----HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 119 ~~~g~~~~~~vl~~~~~y-----hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~l 191 (430)
++++|+..+..- |++......++... .....++++++ ... -|+++|
T Consensus 123 ------pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~----------~~~~~~~y~~~~~~g~-----------iD~d~L 175 (475)
T PLN03226 123 ------PHDRIMGLDLPHGGHLSHGYQTDGKKISATS----------IYFESMPYRLDESTGL-----------IDYDKL 175 (475)
T ss_pred ------CCCEEEECCCCcCcchhhhhhhcccccccce----------EEEEeeeeeecCCCCC-----------cCHHHH
Confidence 678888755322 32221111111110 00011233221 111 188999
Q ss_pred HHHHHhCCCCeEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--e
Q psy14484 192 EILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--C 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~ 268 (430)
++.+.+. +++.+++ ++ + .|...+ +++|.++|+++|++|++|++|. +|..+........+ ..|++ +
T Consensus 176 e~~l~~~--~pklIv~~~S-~---~s~~~D----~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~~p~~-~~Div~~t 243 (475)
T PLN03226 176 EKKAMLF--RPKLIIAGAS-A---YPRDWD----YARMRKIADKVGALLMCDMAHI-SGLVAAQEAASPFE-YCDVVTTT 243 (475)
T ss_pred HHHHhhc--CCeEEEEecC-c---CCCccC----HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCCCCCC-CCeEEEec
Confidence 9988753 3445555 54 3 343444 8899999999999999999997 44333211101111 36776 4
Q ss_pred eecccCCCccccEEEEEcHHHH-----------Hh---hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---HH
Q psy14484 269 LSKGITGGYLPLSLVMTTDKIY-----------NS---IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN---IL 331 (430)
Q Consensus 269 ~sK~l~gG~~~ig~~~~~~~~~-----------~~---~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~ 331 (430)
++|+|.|. +-|++++++++. +. +.. .+.. ..+-+.++..+++..++++++..++ +.
T Consensus 244 ~hK~L~GP--~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~---a~~~--~~~g~p~~~~iaal~aAl~~i~~~~~~~~~ 316 (475)
T PLN03226 244 THKSLRGP--RGGMIFFRKGPKPPKGQGEGAVYDYEDKINF---AVFP--GLQGGPHNHTIAALAVALKQAMTPEFKAYQ 316 (475)
T ss_pred CcccccCC--CceEEEEchhhcccccCCCccHHHHHHHhcc---ccCC--ccCCCchHHHHHHHHHHHHHHhCcCHHHHH
Confidence 66999763 337788877543 11 111 1111 1122234556666667788775443 57
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------CCEE
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTV 401 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------~~~l 401 (430)
+++.++.++|++.|++. ++..+..- ....+..+++. .... . ..++.+.|.+.||.+... +..+
T Consensus 317 ~~~~~na~~L~~~L~~~-G~~l~~~~-t~~hi~lv~~~-~~gi--~--~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~gi 389 (475)
T PLN03226 317 KQVKANAAALANRLMSK-GYKLVTGG-TDNHLVLWDLR-PLGL--T--GSRVEKVLDLAHITLNKNAVPGDSSALVPGGV 389 (475)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEcCC-CCCCEEEEEcc-CCCC--C--HHHHHHHHHHCCCEECCCCCCCCcccCCCCCc
Confidence 78889999999988764 33322211 11345556664 2211 1 246777888889988642 2457
Q ss_pred EE----eCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 402 YL----MPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 402 R~----~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
|+ -.+..++++|++++.+.|.+++.
T Consensus 390 RiGt~~lt~~g~~~~d~~~ia~~i~~~~~ 418 (475)
T PLN03226 390 RIGTPAMTSRGLVEKDFEKVAEFLHRAVT 418 (475)
T ss_pred ccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 77 45667899999999999999886
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-15 Score=141.32 Aligned_cols=287 Identities=11% Similarity=0.013 Sum_probs=169.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++.+ .+..++++||+.|+..++..... ++++||+..+.|++.......
T Consensus 59 r~~~p~~~~le~~lA~l~g--~~~av~~~sG~~Ai~~al~al~~--------~Gd~Vl~~~~~y~~t~~~~~~------- 121 (389)
T PRK05968 59 RGDNPTVRAFEEMLAKLEG--AEDARGFASGMAAISSTVLSFVE--------PGDRIVAVRHVYPDAFRLFET------- 121 (389)
T ss_pred CCCChhHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEeCCCchHHHHHHHH-------
Confidence 4556778899999999985 34566778999999998876654 667899988888764211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......+..+++.. |++++++++. ++++|++|. +.+..+...+ +++|.++|
T Consensus 122 --~~~~~G~~v~~vd~~-----------------d~~~l~~~i~----~tklV~ie~-pt~~~~~~~d----l~~i~~la 173 (389)
T PRK05968 122 --ILKRMGVEVDYVDGR-----------------DEEAVAKALP----GAKLLYLES-PTSWVFELQD----VAALAALA 173 (389)
T ss_pred --HHHHcCceEEEeCCC-----------------CHHHHHHhcc----cCCEEEEEC-CCCCCCcHHH----HHHHHHHH
Confidence 011112233344322 6788888772 466787777 6666654544 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+|+++.... .... .. .+ .|++ +++|.++| |....|++++++++++.+... ..+ ..+ ..
T Consensus 174 ~~~gi~vivD~a~a~~~-~~~p--~~-~g--~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~--~~~-~~g--~~ 242 (389)
T PRK05968 174 KRHGVVTMIDNSWASPV-FQRP--IT-LG--VDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAE--AYP-YLG--AK 242 (389)
T ss_pred HHcCCEEEEECCCcchh-ccCc--hh-cC--CcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHH--HHH-hCC--CC
Confidence 99999999999986321 1111 11 23 4655 56799987 323467788888887766530 000 111 22
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee----------EeecceEEEEEEeecCCccchhH
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN----------FRQKGMIWAFDVIIEDPEQIETF 379 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----------~~~~g~~~~~~~~~~~~~~~~~~ 379 (430)
.++..+..+...|+.+ ....++-.++++++.+.|++.+....+.. ..+.|.++.|++. ++ . .
T Consensus 243 ~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~-~~----~-~ 314 (389)
T PRK05968 243 LSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFR-EG----I-D 314 (389)
T ss_pred CChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEEC-CH----H-H
Confidence 3455444444444433 22334445556677777765422211110 1245778888886 41 1 1
Q ss_pred HHHHHHHHHHCCcEEe---------e-------------------cCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 380 SKKFFVAALKNELLLR---------P-------------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 380 a~~~~~~l~~~Gv~~~---------~-------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+.+|++.|...++.++ | ..+.+|+++.+...++=++.+-++|++
T Consensus 315 ~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 315 VRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred HHHHHHhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 4577787765442111 1 025789988876655545555444443
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-14 Score=148.70 Aligned_cols=354 Identities=14% Similarity=0.118 Sum_probs=200.8
Q ss_pred CCCEEEecccccccccCCCCCH-HHHHHHHHHHhhccccccC-----CCCCHHHHHHHHHHHhhcCCCCC--eEEEcCCc
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNS-YINKALKNQLNKLEHVMLS-----NLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDG 103 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p-~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~--~v~~~~sg 103 (430)
++..|+|..+.. .-+| .|.+++.+.+......... ....+..++.++.++++++++++ .|+||+|+
T Consensus 33 ~~~iYLD~Aatt------~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsna 106 (805)
T PLN02724 33 KGVVYLDHAGAT------LYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGA 106 (805)
T ss_pred CCCEeEeCCCCC------CCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCCh
Confidence 346899976541 2234 4445555554432111111 11235677888999999987665 58999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHH
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (430)
|+|+..+..... +. +++.||+ ....|.+........ ......+..++.+......... ...+
T Consensus 107 T~alnlva~~l~-~~------~gd~Iv~-t~~eH~svl~~~~~a---------~~~G~~v~~v~~~~~~~~~~~~-~g~~ 168 (805)
T PLN02724 107 TAALKLVGETFP-WS------SESHFCY-TLENHNSVLGIREYA---------LEKGAAAIAVDIEEAANQPTNS-QGSV 168 (805)
T ss_pred HHHHHHHHHHCC-CC------CCCeEEE-eeccccchHHHHHHH---------HHcCCeEEeccchhcccccccc-cccc
Confidence 999998866542 11 4456665 455565433221110 0112233344333100000000 0000
Q ss_pred HHHHHHHHHHHHH----hC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc--------CCEEEEeccccCC
Q psy14484 184 ARCAIFDLEILLK----KN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--------NIHLIADEIAVGC 248 (430)
Q Consensus 184 ~~~d~~~le~~l~----~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--------gi~li~DEv~~g~ 248 (430)
..+.++|++.++ .. ++++.+|.+.. +.|.+|.+.| ++.+..+++.. ++++++|.+|+ +
T Consensus 169 -~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~-vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~ 241 (805)
T PLN02724 169 -VVKSRGLQRRNTSKLQKREDDGEAYNLFAFPS-ECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-C 241 (805)
T ss_pred -ccchhhhhhhhhhhhccccccCCCcceEEEEc-cccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-c
Confidence 001144555432 11 24567999999 9999998988 76665444432 36899999997 5
Q ss_pred CCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhcc---CCcc-----------------cccccC
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK---NNIN-----------------IFLHSH 306 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~---~~~~-----------------~~~~~~ 306 (430)
+.. .++...+.+|++++| |.+++- ..+|++++++++.+.+.+. +... .....+
T Consensus 242 g~~----piDv~~~~~Dfl~~S~HK~~GgP-~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~G 316 (805)
T PLN02724 242 GTS----PPDLSRYPADFVVVSFYKIFGYP-TGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDG 316 (805)
T ss_pred CCC----CCChhhcCCCEEEEecceeccCC-CCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCC
Confidence 432 233334568999888 766642 4589999999887665431 1000 000111
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhc---CCCeeeE---------eecceEEEEEEeec
Q psy14484 307 SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT---HPKIINF---------RQKGMIWAFDVIIE 371 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~---------~~~g~~~~~~~~~~ 371 (430)
+.|.++.++..++++.++. +...++.+++.+++.+.|+++.. .+.+.-. ..++.++.|.+. .
T Consensus 317 --T~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~-~ 393 (805)
T PLN02724 317 --TISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLK-R 393 (805)
T ss_pred --CcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEE-c
Confidence 2345555556666766544 56678889999999999987731 1122111 235667777776 3
Q ss_pred CCccchhHHHHHHHHHHHCCcEEeec----------------------------------------CCEEEEeCCCCCCH
Q psy14484 372 DPEQIETFSKKFFVAALKNELLLRPI----------------------------------------GNTVYLMPPYILNK 411 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~~Gv~~~~~----------------------------------------~~~lR~~~~~~~t~ 411 (430)
.....-. ...+...+.++||.++.+ .+.+|+|+++++|.
T Consensus 394 ~~~~~v~-~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~ 472 (805)
T PLN02724 394 ADGSWVG-HREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTF 472 (805)
T ss_pred CCCCEeC-HHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCH
Confidence 2111110 122333334556666421 16799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTF 425 (430)
Q Consensus 412 e~i~~~~~~l~~~l 425 (430)
+||+.+++.|++.+
T Consensus 473 eDvd~lv~~l~~~~ 486 (805)
T PLN02724 473 EDCQKFIDFIISSF 486 (805)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.9e-15 Score=140.79 Aligned_cols=234 Identities=16% Similarity=0.218 Sum_probs=150.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++..+...+|+++++++. +.++++.++||++|+.+++.+ .. ++++||+..+.|.+..........
T Consensus 49 ~R~~~p~~~~le~~lA~le--g~~~~v~~~sG~aAi~~~l~~-l~--------~GD~VI~~~~~yg~~~~~~~~~~~--- 114 (364)
T PRK07269 49 TRTKNPTRAKLEETLAAIE--SADYALATSSGMSAIVLAFSV-FP--------VGSKVVAVRDLYGGSFRWFNQQEK--- 114 (364)
T ss_pred eCCCCccHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHH-hC--------CCCEEEEecCCcCchHHHHHHHHh---
Confidence 3567788889999999998 667999999999999999853 33 567888888888654321111000
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
. .+. .+.+.. |+++++++++ +++++|++|. ++|++|.... +++|.++
T Consensus 115 ------~--~~~-~~~~~~----------------d~~~l~~~i~---~~TklV~les-P~NPtg~~~d----i~~I~~l 161 (364)
T PRK07269 115 ------E--GRF-HFTYAN----------------TEEELIAAIE---EDTDIVYIET-PTNPLMVEFD----IEKVAKL 161 (364)
T ss_pred ------c--CcE-EEEecC----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCeeeC----HHHHHHH
Confidence 0 011 111111 6788988885 5688999998 8898887776 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCc-cccEEEEEc-HHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~-~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||++..- .. ....+...|++++ +|.++|.. .-.|+++++ +++.+.+.. ......
T Consensus 162 a~~~gi~vvvD~t~~~~-~~-----~~pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~------~~~~~G 229 (364)
T PRK07269 162 AHAKGAKVIVDNTFYSP-IY-----QRPIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFY------NLNTTG 229 (364)
T ss_pred HHHcCCEEEEECCCccc-cc-----CCchhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHH------HHHHhC
Confidence 99999999999996411 11 1223445777765 48898721 124566664 566665543 111112
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCee--eEeecceEEEEEEe
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII--NFRQKGMIWAFDVI 369 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~g~~~~~~~~ 369 (430)
...++..+..+...|+.+ +...++.++++.++.+.|+. +|.+. ..++.|.++.|++.
T Consensus 230 ~~~s~~~a~l~~~~L~tL--~~r~~~~~~na~~~a~~L~~---~p~v~~v~ypg~gg~~sf~~~ 288 (364)
T PRK07269 230 AVLSPFDSYLLMRGLKTL--SLRMERSTANAQEVVAFLKK---SPAVKEVLYTGKGGMISFKVA 288 (364)
T ss_pred CCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHh---CCCccEEeCCCcCcEEEEEEC
Confidence 334666555555555433 22345556666666666654 34332 23678899999886
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-15 Score=141.49 Aligned_cols=241 Identities=13% Similarity=0.116 Sum_probs=152.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++.+. +..++++||+.|+..+++.... +++.||+..+.|.+.......
T Consensus 61 r~~~p~~~~le~~lA~l~g~--~~~i~~~sG~~Al~~~l~~ll~--------~Gd~Viv~~~~y~~t~~~~~~------- 123 (403)
T PRK07503 61 RISNPTLALLEQRMASLEGG--EAAVALASGMGAITATLWTLLR--------PGDEVIVDQTLYGCTFAFLHH------- 123 (403)
T ss_pred CCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHcC--------CCCEEEEccCccchHHHHHHH-------
Confidence 56677889999999999853 4567888999999999886643 567888888777432211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
........+.+++.. |+++++++++ +++++|+++. ++|++|...+ +++|.++|
T Consensus 124 --~~~~~G~~v~~vd~~-----------------d~~~l~~~i~---~~tklV~le~-p~NPtG~~~d----i~~I~~la 176 (403)
T PRK07503 124 --GLGEFGVTVRHVDLT-----------------DPAALKAAIS---DKTRMVYFET-PANPNMRLVD----IAAVAEIA 176 (403)
T ss_pred --HHhhCCEEEEEeCCC-----------------CHHHHHHhcC---ccCcEEEEeC-CCCCCCeeeC----HHHHHHHH
Confidence 011112223344332 6788888885 4688899998 8999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|+|++|+.. ..+.. .+...|++ +++|.++| |....|+++.++++.+.+... .........
T Consensus 177 ~~~gi~lIvD~a~a~~-~~~~~-----l~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~----~~~~~~g~~ 246 (403)
T PRK07503 177 HGAGAKVVVDNTYCTP-YLQRP-----LELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLE----GLKDMTGAV 246 (403)
T ss_pred HHcCCEEEEECCCccc-ccCCc-----hhhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhh----hHHhCcCCC
Confidence 9999999999998732 22221 12345665 57799987 435678888888887766530 001112244
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEe
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 369 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~ 369 (430)
.+++.++.+...|+.+. ...++..++..++.+.|++.+. +|... ...+.|.++.+++.
T Consensus 247 ~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~ 319 (403)
T PRK07503 247 MSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELK 319 (403)
T ss_pred CCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEC
Confidence 46665555555554332 2233444566666666654311 22211 12346788888886
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-15 Score=140.91 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=155.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.+++..+ .+..+.++||++|+..++..+.. ++++||+.++.|.+.........
T Consensus 57 r~~~p~~~~Le~~lA~~~g--~~~~i~~~sG~~Ai~~~l~all~--------~Gd~Vl~~~~~y~~t~~~~~~~~----- 121 (388)
T PRK07811 57 RTGNPTRTALEEQLAALEG--GAYGRAFSSGMAATDCLLRAVLR--------PGDHIVIPNDAYGGTFRLIDKVF----- 121 (388)
T ss_pred CCCCccHHHHHHHHHHHhC--CCceEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchHHHHHHHHhC-----
Confidence 4566778899999999985 34556668899999999988764 66789999999875422111110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
........+++.. |++++++.++ +++++|++|. ++|++|...+ +++|.++|
T Consensus 122 ----~~~gi~~~~~d~~-----------------d~e~l~~~i~---~~tklV~ie~-p~NPtg~~~d----l~~I~~la 172 (388)
T PRK07811 122 ----TRWGVEYTPVDLS-----------------DLDAVRAAIT---PRTKLIWVET-PTNPLLSITD----IAALAELA 172 (388)
T ss_pred ----cCCCeEEEEeCCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCcceecC----HHHHHHHH
Confidence 0111122333322 7888998885 4688999988 8888887766 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+||+++.. ..... .....|++ +++|.++| |....|+++++ +++.+.+.. .......
T Consensus 173 ~~~gi~lIvD~a~a~~-~~~~p-----~~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~------~~~~~g~ 240 (388)
T PRK07811 173 HDAGAKVVVDNTFASP-YLQQP-----LALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAF------LQNGAGA 240 (388)
T ss_pred HHcCCEEEEECCCCcc-ccCCc-----hhhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHH------HHHhcCC
Confidence 9999999999998632 22211 12335666 56799987 32346777775 555554443 1111122
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..+..+...|+.+ +...++..++...+.+.|++.+. +|... ...+-|.++.|+++ .+
T Consensus 241 ~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~-~~- 316 (388)
T PRK07811 241 VPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA-GG- 316 (388)
T ss_pred CCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC-CC-
Confidence 23454443333334322 23345556677777777764321 22211 12466889999997 43
Q ss_pred ccchhHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAA 387 (430)
Q Consensus 374 ~~~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 317 ---~~~~~~f~~~l 327 (388)
T PRK07811 317 ---EEAARDFCART 327 (388)
T ss_pred ---HHHHHHHHHhC
Confidence 11134566654
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-15 Score=141.53 Aligned_cols=316 Identities=11% Similarity=0.065 Sum_probs=187.7
Q ss_pred CHHHHHHHHHHHh-hccccccCCCCCHHHHHHHHHHHhhcCCCC-CeEEEc-CCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 52 NSYINKALKNQLN-KLEHVMLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYG-SDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 52 ~p~v~~a~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~-~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
+|+|.+++.+... .+...++.....+..++.++.++++++... .+|+|+ +|||.+++.++..... ++
T Consensus 15 ~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~--------~~-- 84 (361)
T TIGR01366 15 RLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE--------KK-- 84 (361)
T ss_pred CHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc--------cc--
Confidence 6788888764311 111112222234667788899999997533 368875 6799999999986642 22
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
++....+.++......+... ++..+...++.+... .++..+ .+++++|.+.
T Consensus 85 ~l~i~~G~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~-----------------~~~~~~---~~~~~lV~~~ 135 (361)
T TIGR01366 85 SLHLSFGEFSSKFAKAVKLA---------PWLGEPIIVTADPGS-----------------APEPQA---DPGVDVIAWA 135 (361)
T ss_pred ccEEecCHHHHHHHHHHHhh---------hccCCceEEecCCCC-----------------CCCCcc---CCCCCEEEEc
Confidence 33333455554332222111 111122333333210 111112 3578889999
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
. ..+.+|...| +++| ++++|+++++|.+++ ++-. ...++ . .|++++| |.+++- -.++.++++
T Consensus 136 h-~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g~~--~idv~--~--~D~~~~s~~K~lg~~-~Gl~~~~~s 199 (361)
T TIGR01366 136 H-NETSTGVAVP----VRRP---EGSDDALVVIDATSG-AGGL--PVDIA--E--TDVYYFAPQKNFASD-GGLWLAIMS 199 (361)
T ss_pred c-cCCccceecc----cccc---cccCCCeEEEEcCcc-ccCC--CCCHH--H--CCEEEEEchhhcCCC-CceEEEEEC
Confidence 9 8899998888 6666 589999999999998 5322 22222 1 5888887 888762 136667788
Q ss_pred HHHHHhhhcc---CCcc-cc----------cccCCCCC-CHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHc
Q psy14484 287 DKIYNSIYYK---NNIN-IF----------LHSHSYSG-NPLACCAALATLEIFNKD----NILQRISQDMKKITKALTS 347 (430)
Q Consensus 287 ~~~~~~~~~~---~~~~-~~----------~~~~t~~~-~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~ 347 (430)
+++.+.+... +... .+ ....|.+. +...+.+..++++.+... ...++.+++.+++++.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~ 279 (361)
T TIGR01366 200 PAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE 279 (361)
T ss_pred HHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 8877665421 0000 00 00233333 334444666777776543 2346677788888888877
Q ss_pred hhcCC-CeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 348 LITHP-KIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 348 l~~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+.... ...... .......+.+. ++.. ...+.+.|.++||.+.+. ++.+|+++...+|++||++++++
T Consensus 280 ~~~~~~~~~~~~~~s~~v~~v~~~-~g~~-----~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~a 353 (361)
T TIGR01366 280 RPYATPFVTDPGKRSQVVGTIDFV-DDID-----AATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTEC 353 (361)
T ss_pred CCCcccCCCChhhcccceEEEECC-CccC-----HHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 63221 111110 11122333334 3211 356888888999998764 35799999999999999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|++++.++
T Consensus 354 l~~~~~~~ 361 (361)
T TIGR01366 354 VDWVVERL 361 (361)
T ss_pred HHHHHhhC
Confidence 99988763
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.5e-14 Score=133.86 Aligned_cols=310 Identities=14% Similarity=0.074 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
++-.+++.+.+..... ....+..+++++.+++.+ +.+++++++||++|+..++.++.. .+++.|++.
T Consensus 11 ~~~~~~~~~~l~~~~~----~g~~~~~~~~e~~la~~~--g~~~~v~~~sgt~al~~~l~~~~~-------~~Gd~Viv~ 77 (375)
T PRK11706 11 GTELDYIQQAMSSGKL----CGDGGFTRRCQQWLEQRF--GSAKVLLTPSCTAALEMAALLLDI-------QPGDEVIMP 77 (375)
T ss_pred HHHHHHHHHHHHcCCc----cCCCHHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHhCC-------CCCCEEEEC
Confidence 3446677776654321 223466788888899888 567999999999999988776521 156889998
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 212 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~ 212 (430)
.++|..........+ ...++++.+.+... .|++++++.++ +++++|++ ++
T Consensus 78 ~~t~~~~~~~~~~~G-------------~~~v~~d~d~~~~~-----------~d~~~le~~i~---~~tk~i~~---~~ 127 (375)
T PRK11706 78 SYTFVSTANAFVLRG-------------AKIVFVDIRPDTMN-----------IDETLIEAAIT---PKTRAIVP---VH 127 (375)
T ss_pred CCCcHHHHHHHHHcC-------------CEEEEEecCCCcCC-----------cCHHHHHHhcC---CCCeEEEE---eC
Confidence 888876543332221 22234433321111 17899999885 35677664 32
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC--cccccccccCCCCCceeeee----cccCCCccccEEEEEc
Q psy14484 213 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT 286 (430)
Q Consensus 213 ~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~--~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~ 286 (430)
.+|...+ +++|.++|+++|+++|.|++|+ ++. .|.. .+...|+.+|| |.++.| .+.+++..+
T Consensus 128 -~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~~-----~g~~~~~~~~Sf~~~K~l~~g-~gG~~~~~~ 195 (375)
T PRK11706 128 -YAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGRA-----LGTIGHIGCFSFHETKNYTAG-EGGALLIND 195 (375)
T ss_pred -CCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCee-----eecCcCEEEEeCCCCcccccc-CCeEEEECC
Confidence 3565555 8999999999999999999997 432 2211 12224778888 998765 344455556
Q ss_pred HHHHHhhhc---cCCccc------------ccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcC
Q psy14484 287 DKIYNSIYY---KNNINI------------FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH 351 (430)
Q Consensus 287 ~~~~~~~~~---~~~~~~------------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 351 (430)
+++.+.+.. .+..+. ...+.++-.+.+.++.+.+.|+.+ +...++-+++.+++.+.|..+...
T Consensus 196 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~ 273 (375)
T PRK11706 196 PALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEA 273 (375)
T ss_pred HHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcC
Confidence 777654332 110000 001122222334444444445443 345566666777777777665311
Q ss_pred CCee--eEe----ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee--------------------c-------C
Q psy14484 352 PKII--NFR----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--------------------I-------G 398 (430)
Q Consensus 352 ~~~~--~~~----~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~--------------------~-------~ 398 (430)
+.+. ..+ ....++.+.+. +. . . .+++.+.|.++||.+.. + .
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~---r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~ 347 (375)
T PRK11706 274 GRIELPSIPDDCKHNAHMFYIKLR-DL-E-D---RSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESE 347 (375)
T ss_pred CeeecCCCCCCCceeeEEEEEEEC-Cc-C-C---HHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHh
Confidence 1111 111 11223333333 21 1 1 36899999999997531 0 1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.+.+-++...+++|++.+++.|++++
T Consensus 348 ~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 348 RLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred CcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 334454555579999999999998765
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-14 Score=134.94 Aligned_cols=315 Identities=10% Similarity=0.026 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHhhcccccc-----CCCCC---HHHHHHHHHHHhhcCCC-CCeEEEcCC-chHHHHHHHHHHHHhhhhc
Q psy14484 52 NSYINKALKNQLNKLEHVML-----SNLTH---KPVIKLSEKLSSLTQYK-LGHCFYGSD-GASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~-----~~~~~---~~~~~l~~~l~~~~~~~-~~~v~~~~s-gteA~~~al~~~~~~~~~~ 121 (430)
+..|++++.+.+.+...... ..... +..+++++.|.++++.. ..+|+|++| ||+|+++++.....
T Consensus 4 p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~----- 78 (349)
T TIGR01364 4 PEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLA----- 78 (349)
T ss_pred CHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-----
Confidence 55788898888775431111 11112 56678888899998642 236777765 99999999987764
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
+.+++++...++.|+...-.+.. ... ...+..+...... .. .++++++ + ..+
T Consensus 79 ---~~~~~l~i~~G~fg~r~~~~a~~-----------~g~-~~~~~~~~~~~~~--~~------~~~~~~~--~---~~~ 130 (349)
T TIGR01364 79 ---EGKVADYIVTGAWSKKAAKEAKK-----------YGV-VNVVASGKEGNYT--KI------PDPSTWE--I---SED 130 (349)
T ss_pred ---CCCeEEEEECCHHHHHHHHHHHH-----------hCC-cEEEeccccCCCC--CC------CCHHhcC--C---CCC
Confidence 45667777777767643222211 111 1222211100000 00 1444444 2 236
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccc
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLP 279 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ 279 (430)
+.+|.+.. ..+++|...+ ++++.+++++++|.+++ +|.. ...++.+ |++++| |+++. ..
T Consensus 131 ~~~v~~th-~ETstGv~~~---------~l~~~~~~l~iVDavss-~g~~--~id~~~~----d~~~~ssqK~lgP--~G 191 (349)
T TIGR01364 131 AAYVHYCA-NETIHGVEFR---------ELPDVKNAPLVADMSSN-ILSR--PIDVSKF----GLIYAGAQKNIGP--AG 191 (349)
T ss_pred CCEEEEcC-CCCcccEecc---------eecccCCCeEEEEcccc-ccCc--cCCHHHc----cEEEEecccccCC--Cc
Confidence 77788877 7778887654 66777899999999987 4322 2223322 467666 88852 35
Q ss_pred cEEEEEcHHHHHhhhccCCccccc-------ccCC-CCCCHHHHHHHHHHHHHHhhc-C---HHHHHHHHHHHHHHHHHc
Q psy14484 280 LSLVMTTDKIYNSIYYKNNINIFL-------HSHS-YSGNPLACCAALATLEIFNKD-N---ILQRISQDMKKITKALTS 347 (430)
Q Consensus 280 ig~~~~~~~~~~~~~~~~~~~~~~-------~~~t-~~~~~~~~~aa~~~l~~~~~~-~---~~~~~~~~~~~l~~~l~~ 347 (430)
+|.+++++++.+.+.+. ...+. ...+ ++++.....+..++|+.+.++ + ..++.+++.+++++.|++
T Consensus 192 lg~l~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~ 269 (349)
T TIGR01364 192 LTVVIVRKDLLGRASRI--TPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN 269 (349)
T ss_pred eEEEEECHHHHhhcccC--CCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988765441 10110 1122 345556666777888877654 3 445667788888888877
Q ss_pred hhcCCCe-eeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 348 LITHPKI-INF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 348 l~~~~~~-~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+..+... ... .....++.|..+ +. .+..++.+.+.++|+.+.++ .+.+|+++..++|+|||+.++++|+
T Consensus 270 ~~gl~~~~~~~~~rs~~v~sf~~~-~~-----~~~~~~~~~~~~~Gi~~~~~~~~~g~vRvS~~~~nt~edid~l~~al~ 343 (349)
T TIGR01364 270 SNGFYRNPVDPRNRSRMNVVFTLG-NE-----ELEKRFLKEAEERGLVSLKGHRSVGGMRASIYNAMPLEGVQALVDFMK 343 (349)
T ss_pred CCCeeccCCCHHHcCCeEEEEecC-Ch-----hHhHHHHHHHHHCCCcccCCccccCeeEEECcCCCCHHHHHHHHHHHH
Confidence 6322111 110 112245666655 32 11256767888999965554 2689999999999999999999999
Q ss_pred HHHH
Q psy14484 423 QTFN 426 (430)
Q Consensus 423 ~~l~ 426 (430)
+++.
T Consensus 344 ~~~~ 347 (349)
T TIGR01364 344 EFQK 347 (349)
T ss_pred HHHH
Confidence 8764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-14 Score=136.25 Aligned_cols=252 Identities=12% Similarity=0.087 Sum_probs=151.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
...+....|++.++++.+ .+.+++++||++|+..++..+.. ++++||+.++.|.+........
T Consensus 58 ~~npt~~~Le~~iA~le~--~~~~~~~~sG~~Ai~~~l~all~--------~GD~Vvv~~~~Y~~t~~l~~~~------- 120 (394)
T PRK09028 58 RGTPTHFAFQAAIVELEG--GAGTALYPSGAAAISNALLSFLK--------AGDHLLMVDSCYEPTRDLCDKI------- 120 (394)
T ss_pred CCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEECCCcHHHHHHHHHh-------
Confidence 334556788899998873 35789999999999999887654 6788999999986653221110
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
......++.+++.. +.+.++++++ +++++|++|. ++|++|.+.+ +++|.++|+
T Consensus 121 --l~~~Gi~v~~v~~~-----------------~~e~l~~~l~---~~TklV~les-psNPtg~v~d----l~~I~~la~ 173 (394)
T PRK09028 121 --LKGFGIETTYYDPM-----------------IGEGIRELIR---PNTKVLFLES-PGSITMEVQD----VPTLSRIAH 173 (394)
T ss_pred --hhhcceEEEEECCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCcHHH----HHHHHHHHH
Confidence 01111222233211 4567887774 5789999999 9999987766 999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCC-ccccEEEEEcHHHHHhhhccCCcccccccCCCCC
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG 310 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 310 (430)
++|+++++|++|+. +. .+....+.+|+++ ..|.++|. -.-.|+++.++++.+.+.. .........
T Consensus 174 ~~g~~lvvD~t~a~-p~-----~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~------~~~~~G~~~ 241 (394)
T PRK09028 174 EHDIVVMLDNTWAS-PI-----NSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLRE------HSYLMGQCT 241 (394)
T ss_pred HcCCEEEEECCccc-cc-----cCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHH------HHHhcCCCC
Confidence 99999999999862 11 1222344568775 55999873 2345666666766555543 011111123
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCcc
Q psy14484 311 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPEQ 375 (430)
Q Consensus 311 ~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~~ 375 (430)
+|..+.-..-.|+.+. -..++..+++..+.+.|++.+ .+|++. ...+-|.++.|++. ++.
T Consensus 242 ~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~-~~~-- 316 (394)
T PRK09028 242 SPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLK-QGD-- 316 (394)
T ss_pred CHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEEC-CCC--
Confidence 4544433333333221 123444555555666665431 122211 12456889999986 421
Q ss_pred chhHHHHHHHHH
Q psy14484 376 IETFSKKFFVAA 387 (430)
Q Consensus 376 ~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 317 -~~~~~~f~~~l 327 (394)
T PRK09028 317 -PKAVTALVEGM 327 (394)
T ss_pred -HHHHHHHHHhC
Confidence 11235666665
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=136.37 Aligned_cols=287 Identities=13% Similarity=0.118 Sum_probs=169.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+...+++++++++.+.. ..+++++|+.|+..++. +.. ++++||+.++.|++........
T Consensus 50 r~~~p~~~~le~~lA~l~g~~--~~v~~~sG~~ai~~~l~-~l~--------~Gd~Vlv~~~~y~~~~~~~~~~------ 112 (390)
T PRK08064 50 RSGNPTREALEDIIAELEGGT--KGFAFASGMAAISTAFL-LLS--------KGDHVLISEDVYGGTYRMITEV------ 112 (390)
T ss_pred CCCChhHHHHHHHHHHHhCCC--CeEEECCHHHHHHHHHH-HhC--------CCCEEEEccCccchHHHHHHHH------
Confidence 455677889999999998633 45667888999988875 332 5678999999887653221110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.+++.. |++++++.++ +++++|+++. ++|++|.+.+ +++|.++|
T Consensus 113 ---~~~~G~~v~~v~~~-----------------d~~~l~~~l~---~~tklV~l~~-p~NptG~~~d----l~~I~~la 164 (390)
T PRK08064 113 ---LSRFGIEHTFVDMT-----------------NLEEVAQNIK---PNTKLFYVET-PSNPLLKVTD----IRGVVKLA 164 (390)
T ss_pred ---HHHcCCEEEEECCC-----------------CHHHHHHhcC---CCceEEEEEC-CCCCCcEecc----HHHHHHHH
Confidence 01112333444432 6788888885 5688999998 9999998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC-ccccEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG-~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+|++|..+. .... . ....|++ +++|.++|. ..-.|+++++ +++.+.+.. .......
T Consensus 165 ~~~g~~vvvD~a~~~~~-~~~~--~---~~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~------~~~~~g~ 232 (390)
T PRK08064 165 KAIGCLTFVDNTFLTPL-LQKP--L---DLGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYF------LQNSFGA 232 (390)
T ss_pred HHcCCEEEEECCCCccc-ccCc--h---hhCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHH------HHHhcCC
Confidence 99999999999986321 1111 1 2235766 466988762 1234666665 567776654 1121122
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..++..+..+...++.+ +...++..+....+.+.|++... +|.+. ...+.|.++.|++. + .
T Consensus 233 ~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~-~-~ 308 (390)
T PRK08064 233 VLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ-S-E 308 (390)
T ss_pred CCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC-C-H
Confidence 22333222222222211 11233444455555555543211 11111 23467888999886 3 1
Q ss_pred ccchhHHHHHHHHHHH--C----C----cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALK--N----E----LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~--~----G----v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
. .+..|.+.+.= . | ++..| ..+.+|+++.+...++.|+.+.++|+++
T Consensus 309 ---~-~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 309 ---E-AVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred ---H-HHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 1 12344444311 0 1 01000 1367999999999888888888888764
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=139.61 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=172.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+...++++.++++.+ .+++++++||++|+..++..+.. +++.|++..+.|++.........
T Consensus 49 r~~np~~~~lE~~lA~l~g--~~~~l~~~sG~~Ai~~~l~~ll~--------~GD~Vlv~~~~y~~~~~~~~~~~----- 113 (385)
T PRK08574 49 REENPTLRPLEEALAKLEG--GVDALAFNSGMAAISTLFFSLLK--------AGDRVVLPMEAYGTTLRLLKSLE----- 113 (385)
T ss_pred CCCCccHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchhHHHHHHHhh-----
Confidence 5566778899999999994 46788889999999999887654 66889998888876532221110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......++. + |++++++++++ .++++|++|. ++|++|.+.+ +++|.++|
T Consensus 114 -----~~g~~v~~~~-~-----------------d~~~l~~~i~~--~~tklV~ie~-p~NPtG~v~d----l~~I~~la 163 (385)
T PRK08574 114 -----KFGVKVVLAY-P-----------------STEDIIEAIKE--GRTKLVFIET-MTNPTLKVID----VPEVAKAA 163 (385)
T ss_pred -----ccCcEEEEEC-C-----------------CHHHHHHhcCc--cCceEEEEEC-CCCCCCEecC----HHHHHHHH
Confidence 0011112221 1 56788888862 2688999999 9999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEE-cHHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMT-TDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~-~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+|++++ .+..... . ....|++ +++|.++|..-.+ |++++ ++++.+.+.. +....+.
T Consensus 164 ~~~gi~livD~t~a-~~~~~~~--l---~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~------~~~~~g~ 231 (385)
T PRK08574 164 KELGAILVVDNTFA-TPLLYRP--L---RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWE------WRRRLGT 231 (385)
T ss_pred HHcCCEEEEECCCC-ccccCCh--h---hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHH------HHHhcCC
Confidence 99999999999985 2111111 1 1234655 5779998621234 53555 5677666543 1111222
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCeee----------E--eecceEEEEEEeec
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------F--RQKGMIWAFDVIIE 371 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~~----------~--~~~g~~~~~~~~~~ 371 (430)
..++..+..+...|+.+. ...++..+++.++.+.|+..+. +|.... . .+-|.++.|++. .
T Consensus 232 ~~~p~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~-~ 308 (385)
T PRK08574 232 IMQPFEAYLVLRGLKTLE--VRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVK-G 308 (385)
T ss_pred CCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeC-C
Confidence 334554544444444332 2344445566666676654321 222211 1 246889999986 4
Q ss_pred CCccchhHHHHHHHHHHH--CCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAALK--NEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~--~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+ .+.+.+|.+.|.= .+. +..| ..+.+|+++.+. +.+.+++.|++
T Consensus 309 ~----~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dli~dl~~ 380 (385)
T PRK08574 309 G----RDAVLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGLE----DVEDLIEDLDQ 380 (385)
T ss_pred C----HHHHHHHHHcCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHH
Confidence 2 1123556665431 111 1111 025789986654 46666677777
Q ss_pred HHHH
Q psy14484 424 TFNE 427 (430)
Q Consensus 424 ~l~~ 427 (430)
+|++
T Consensus 381 al~~ 384 (385)
T PRK08574 381 ALGS 384 (385)
T ss_pred HHhc
Confidence 6654
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=139.00 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=117.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+...+|++.|+++.+ .+..++++||++|+..++..+.. ++++|++..+.|++.........
T Consensus 54 r~~~pt~~~Le~~lA~l~g--~~~~l~~ssG~~Ai~~al~al~~--------~Gd~Vl~~~~~Y~~t~~~~~~~l----- 118 (425)
T PRK06084 54 RIMNPTNDVLEQRVAALEG--GVGALAVASGMAAITYAIQTIAE--------AGDNIVSVAKLYGGTYNLLAHTL----- 118 (425)
T ss_pred CCCCchHHHHHHHHHHHhC--CCceeEehhHHHHHHHHHHHHhC--------CCCEEEEeCCCcchHHHHHHHhc-----
Confidence 4566778899999999984 45778899999999999988765 56789999999986532221110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.....+..+++.. |+++++++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 119 ----~~~gi~v~~~d~~-----------------d~e~le~ai~---~~tklV~les-p~NPtG~v~d----l~~I~~la 169 (425)
T PRK06084 119 ----PRIGIETRFAAHD-----------------DIAALEALID---ERTKAVFCES-IGNPAGNIID----IQALADAA 169 (425)
T ss_pred ----ccceeEEEEECCC-----------------CHHHHHHHhc---cCCcEEEEeC-CCCCCCeecC----HHHHHHHH
Confidence 0011122233322 7889999886 4678899999 9999997777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEc
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~ 286 (430)
+++|+++|+|++++ .+... ......+|++ +++|.++|...++|.+++.
T Consensus 170 ~~~~i~vVvD~a~a-~~~~~-----~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 170 HRHGVPLIVDNTVA-TPVLC-----RPFEHGADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred HHcCCEEEEECCCc-ccccC-----ChhhcCCCEEEECchhcccccccceeEEEEe
Confidence 99999999999986 22211 1123346766 5779998843677876663
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-14 Score=136.83 Aligned_cols=316 Identities=11% Similarity=0.026 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhhccc-----cccCCCCC---HHHHHHHHHHHhhcCCC-CCeE-EEcCCchHHHHHHHHHHHHhhhh
Q psy14484 51 SNSYINKALKNQLNKLEH-----VMLSNLTH---KPVIKLSEKLSSLTQYK-LGHC-FYGSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~---~~~~~l~~~l~~~~~~~-~~~v-~~~~sgteA~~~al~~~~~~~~~ 120 (430)
-+++|++|+.+.+.+... ........ +..++..+.+.++++.. ..++ +++.||+.|+++++..+..
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~~---- 89 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLLG---- 89 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcCC----
Confidence 478999999988644310 01111122 66788889999999742 2345 4457999999999887765
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH-HHHhCC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI-LLKKNH 199 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~ 199 (430)
+.+++++...+..|+...-.+-. .... ..+..+...... +..++++ .++
T Consensus 90 ----~g~~~l~i~~G~fg~r~~~~a~~-----------~g~~-~~~~~~~~~g~~-----------~~~~~~~~~l~--- 139 (360)
T PRK05355 90 ----GGKKADYVDTGSWSKKAIKEAKK-----------YGEV-NVAASSEDDGFT-----------YIPPLDEWQLS--- 139 (360)
T ss_pred ----CCCeEEEEECCHHHHHHHHHHHH-----------hCCc-eEEecccccCCC-----------CCCChhhccCC---
Confidence 44566666666666543211110 1111 122222101110 2233333 453
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 277 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~ 277 (430)
.++++|.+.. ..+++|...++ +++| +|+++++|.+++ +|.. ....+.+ |++++| |.++.
T Consensus 140 ~~~~~V~~th-~eTstGv~~~~---i~~i------~g~l~vVDavss-~g~~--~idv~~~----d~~~~ssqK~lgP-- 200 (360)
T PRK05355 140 DDAAYVHYTS-NETIDGTEFHE---LPDT------GDVPLVADMSSD-ILSR--PIDVSKF----GLIYAGAQKNIGP-- 200 (360)
T ss_pred CCCCEEEEcc-CCCcceEecCc---cccc------CCCcEEEEcCcc-ccCc--cCCHHHc----cEEEEeccccccC--
Confidence 3567788877 77888977642 5555 899999999997 5322 2333322 477776 88752
Q ss_pred cccEEEEEcHHHHHhhhccCCcc-------cccccCCCCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHH
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNIN-------IFLHSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALT 346 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~-------~~~~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~ 346 (430)
..+|.+++++++.+.+.+. ... .......++++.....+..++|+.+.+. +..++.+++.+++++.|+
T Consensus 201 ~Glg~l~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~ 279 (360)
T PRK05355 201 AGLTIVIVREDLLGRALPS-IPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAID 279 (360)
T ss_pred CceEEEEECHHHHhhcccC-CChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999988775441 000 0001112345566677777888877654 345666778888888888
Q ss_pred chhcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 347 SLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 347 ~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
++.-...+.. ....+.++.|..+ .. .....+.+.+.++|+.+.++ .+.+|+++..++|++||+.+++.|+
T Consensus 280 ~~~~~~~~~~~~~rs~~v~sf~~~-~~-----~~~~~~~~~~~~~Gi~~~~~~~~~g~vRiS~~~~nt~eei~~l~~~l~ 353 (360)
T PRK05355 280 SSDFYRNPVAPEDRSRMNVPFTLA-DE-----ELDKKFLAEAKAAGLVGLKGHRSVGGMRASIYNAMPLEGVQALVDFMK 353 (360)
T ss_pred hCCCcccCCChhhcCCcEEEEEcC-Ch-----HHHHHHHHHHHHCCCcccCCCCccCcEEEECCCCCCHHHHHHHHHHHH
Confidence 7631111111 1122355666655 32 11246777888999998554 2679999999999999999999999
Q ss_pred HHHH
Q psy14484 423 QTFN 426 (430)
Q Consensus 423 ~~l~ 426 (430)
+++.
T Consensus 354 ~~~~ 357 (360)
T PRK05355 354 EFER 357 (360)
T ss_pred HHHH
Confidence 9765
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-14 Score=135.72 Aligned_cols=172 Identities=10% Similarity=0.025 Sum_probs=118.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++..+.|++.++.+-+ .+..++++||++|+..++..+.. ++++||+.++.|.++.......
T Consensus 60 R~gnPt~~~Le~~la~le~--~~~~v~~sSG~aAi~~~l~all~--------~GD~Vlv~~~~Y~~~~~l~~~~------ 123 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEG--SAGTILVPSGLAAVTVPFLGFLS--------PGDHALIVDSVYYPTRHFCDTM------ 123 (395)
T ss_pred CCCChHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhcC--------CCCEEEEccCCcHHHHHHHHHH------
Confidence 5667888999999998863 34456677799999999887754 6789999999998764221111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.+++.. +.+.++++++ +++++|++|. +.|+.+...+ +++|.++|
T Consensus 124 ---l~~~Gi~v~~vd~~-----------------~~e~l~~al~---~~TklV~les-PsNP~l~v~d----l~~I~~la 175 (395)
T PRK05967 124 ---LKRLGVEVEYYDPE-----------------IGAGIAKLMR---PNTKVVHTEA-PGSNTFEMQD----IPAIAEAA 175 (395)
T ss_pred ---HHhcCeEEEEeCCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCcHHH----HHHHHHHH
Confidence 11112233343221 3467888885 5689999998 8888776666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhh
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIY 294 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~ 294 (430)
+++|+++++|++++... .+....+..|++ +.+|.++| |-.-.|++..+++..+.+.
T Consensus 176 ~~~g~~vvVD~t~a~p~------~~~pl~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~ 234 (395)
T PRK05967 176 HRHGAIVMMDNTWATPL------YFRPLDFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLL 234 (395)
T ss_pred HHhCCEEEEECCccCce------ecChhHcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHH
Confidence 99999999999986321 122223345666 57799887 3345666666776555443
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-14 Score=137.84 Aligned_cols=325 Identities=10% Similarity=0.058 Sum_probs=193.5
Q ss_pred CCHHHHHHHHHHHhhcCCCCC-------eEEEcCCchHHHHHHHHHHHHhhhh-cCCCC-CcEEEEEcCCCCCcchhhhc
Q psy14484 75 THKPVIKLSEKLSSLTQYKLG-------HCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGALA 145 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~-------~v~~~~sgteA~~~al~~~~~~~~~-~g~~~-~~~vl~~~~~yhg~~~~~~~ 145 (430)
.+....++.++++++++.+.+ .-++++|||+||..|+.++|..... .|..+ +..++..+..-|-+..-+..
T Consensus 120 ~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~ 199 (490)
T PLN02880 120 ATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQ 199 (490)
T ss_pred cHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHH
Confidence 446777888999999863321 3688999999999999999975432 22111 23344444444654332222
Q ss_pred cCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccC
Q psy14484 146 VTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMY 220 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~ 220 (430)
+.+-. ...++.++.+. .++. |+++|+++|++. +..+.+|+.+- ...++|.+.|
T Consensus 200 ~lGlg---------~~~v~~Vp~d~~~~~~m------------d~~~L~~~i~~~~~~g~~p~~vvata-GTT~~GaiDp 257 (490)
T PLN02880 200 IAGIH---------PENCRLLKTDSSTNYAL------------APELLSEAISTDLSSGLIPFFLCATV-GTTSSTAVDP 257 (490)
T ss_pred HcCCC---------HHHEEEeecCCCcCCcC------------CHHHHHHHHHHHHHCCCccEEEEEec-CCCcCcccCc
Confidence 22210 01234555543 2233 889999998753 33466777776 7778898888
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH--HHHhhhc
Q psy14484 221 DSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK--IYNSIYY 295 (430)
Q Consensus 221 ~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~--~~~~~~~ 295 (430)
+++|.++|++||+++|||.+|.|+...-..+-....++ .+|-+++. |.+... .+.|+++.+.. +.+.+..
T Consensus 258 ----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P-~~~g~llvr~~~~l~~~~~~ 332 (490)
T PLN02880 258 ----LLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN-FDCSLLWVKDRNALIQSLST 332 (490)
T ss_pred ----HHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC-ccEEEEEEeCHHHHHHHHcc
Confidence 99999999999999999999986532211111122343 47777655 887665 57888888742 2222221
Q ss_pred cC-----Cccc---ccccCCC---CCCHHHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHHHHHchhcCCCeeeEeecc
Q psy14484 296 KN-----NINI---FLHSHSY---SGNPLACCAALATLEIFNKDNILQRIS---QDMKKITKALTSLITHPKIINFRQKG 361 (430)
Q Consensus 296 ~~-----~~~~---~~~~~t~---~~~~~~~~aa~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~~~g 361 (430)
.. .... ......+ .+..+.....+.+|+.+..+++.++++ ++++++.+.|++......+. ++.-
T Consensus 333 ~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~--~~~~ 410 (490)
T PLN02880 333 NPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT--PRIF 410 (490)
T ss_pred CHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec--CCce
Confidence 00 0000 0000000 111222344555677666677877777 88888888887543222221 2334
Q ss_pred eEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEe-ec----CCEEEEeCCCCC-CHHHHHHHHHHHHHHHHHhh
Q psy14484 362 MIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLR-PI----GNTVYLMPPYIL-NKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 362 ~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~-~~----~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+++|.+. +.... ...+..++.++|.+.|-+.. +. ..++|+++.... ++++++.+++.|.+...+++
T Consensus 411 ~iv~Fr~~-~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~ 486 (490)
T PLN02880 411 SLVCFRLV-PPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLL 486 (490)
T ss_pred EEEEEEEe-CCCCChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46666665 32211 12233567777777765443 32 257899876665 46999999999999887764
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-13 Score=129.95 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHhhcCCCCC--eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 76 HKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~--~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
.+...++.++++++++.+.+ .-++|+||||||..|+.++|.+. + +.++..+..-|-+..
T Consensus 132 ~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~------~-~~vvy~S~~aH~Sv~------------ 192 (470)
T PLN02263 132 RQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF------P-DGILYASRESHYSVF------------ 192 (470)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc------C-CcEEEEcCCccHHHH------------
Confidence 45667888999999975443 36889999999999999999853 2 335665656664422
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
+....+..+.+.++.+...+. |+++|+++|.+...++..|+.+- ...+.|.+-| +++|.++|+
T Consensus 193 KAa~llgi~~~~Vp~d~~g~m------------D~~aL~~aI~~d~~~P~iVvata-GTT~~GAiDp----i~eIa~i~~ 255 (470)
T PLN02263 193 KAARMYRMECVKVDTLVSGEI------------DCADFKAKLLANKDKPAIINVNI-GTTVKGAVDD----LDLVIKTLE 255 (470)
T ss_pred HHHHhcCCcceEeccCCCCcC------------cHHHHHHHHHhCCCCcEEEEEEe-cCCCCcCCCC----HHHHHHHHH
Confidence 222223334556666554444 99999999986544466676676 7778898888 999999999
Q ss_pred hcCC-----EEEEeccccCCCC----cccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccc
Q psy14484 234 NYNI-----HLIADEIAVGCGR----TGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 302 (430)
Q Consensus 234 ~~gi-----~li~DEv~~g~g~----~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~ 302 (430)
++|+ +|+||.++.|+.. ....+.+. ...|=++++ |.++.. ++.|.++.+++..+.+... ...+
T Consensus 256 ~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~---~~vDSIsvD~HK~l~~P-~~cgvll~R~~~~~~~~~~--~~Yl 329 (470)
T PLN02263 256 ECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFK---KPIGSVSVSGHKFVGCP-MPCGVQITRMEHINVLSSN--VEYL 329 (470)
T ss_pred HcCCccCCeeEEEeccchhhHhhhcccccccCCC---cCccEEEECCccccCCC-cCEEEEEEehhhHhhhccC--hHhh
Confidence 9997 9999999987632 10111111 114444544 766655 6889999997655443321 0000
Q ss_pred c-ccCCCCCC--HHHHHHHHHHHHHHhhcCHHHHH---HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc
Q psy14484 303 L-HSHSYSGN--PLACCAALATLEIFNKDNILQRI---SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI 376 (430)
Q Consensus 303 ~-~~~t~~~~--~~~~~aa~~~l~~~~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 376 (430)
. ...|..++ .......+.+|+.+..+++.+.+ .++++++.++|++. +...-..+..+.+.|..+ .
T Consensus 330 ~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~---g~~~~~~p~s~~V~f~~p-~----- 400 (470)
T PLN02263 330 ASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA---GISAMLNELSSTVVFERP-K----- 400 (470)
T ss_pred CCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCceEEEEecC-c-----
Confidence 0 00122222 12345666777766655655544 55677787888765 222223344444444333 1
Q ss_pred hhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 377 ETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 377 ~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.. +..+|..+...++.+++.+...++.+.+|++++.|++...
T Consensus 401 ----~~----~~~~gW~L~~~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 401 ----DE----EFVRRWQLACQGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred ----hH----HhhcceEEccCCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 11 1246777777777788877777789999999999988765
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-13 Score=132.00 Aligned_cols=314 Identities=13% Similarity=0.065 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
++-.+++.+.+.... ....+...++++.+++.++ .++.++++||++|+..+++++.- .+++.|++.
T Consensus 10 ~~~~~~v~~~~~~~~-----~~~g~~~~~le~~la~~~g--~~~~v~~~sgt~al~~~l~al~~-------~~Gd~Viv~ 75 (380)
T TIGR03588 10 QDDIDAVVEVLKSDF-----LTQGPTVPAFEEALAEYVG--AKYAVAFNSATSALHIACLALGV-------GPGDRVWTT 75 (380)
T ss_pred HHHHHHHHHHHhcCC-----ccCChhHHHHHHHHHHHHC--CCeEEEEcCHHHHHHHHHHHcCC-------CCCCEEEeC
Confidence 445677777665432 1223456788999999985 35677788999999999987621 156789998
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPL 210 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~ 210 (430)
+++|++........ ..+.++++.. .... .|++++++.+++.+ +++++|++..
T Consensus 76 ~~~~~~~~~~~~~~-------------G~~~~~~~~~~~~~~------------~d~~~l~~~i~~~~~~~t~~v~~~~- 129 (380)
T TIGR03588 76 PITFVATANCALYC-------------GAKVDFVDIDPDTGN------------IDEDALEKKLAAAKGKLPKAIVPVD- 129 (380)
T ss_pred CcchHHHHHHHHHc-------------CCEEEEEecCCCcCC------------cCHHHHHHHhhcccCCCceEEEEeC-
Confidence 88887653222211 1223444442 2211 28899999996321 3566666432
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC--CCceeeee----cccCCCccccEEEE
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI--WPDFLCLS----KGITGGYLPLSLVM 284 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~--~~d~~~~s----K~l~gG~~~ig~~~ 284 (430)
..|...+ +++|.++|++||+++|+|++|+ +|-. +.-...+. .-|+.++| |.++.| ..|+++
T Consensus 130 ---~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~---~~~~~~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~ 196 (380)
T TIGR03588 130 ---FAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAE---YGGKPVGNCRYADATVFSFHPVKIITTA--EGGAVT 196 (380)
T ss_pred ---CCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCc---cCCEeCCCccccceEEEecCCCCccccc--CceEEE
Confidence 2465555 9999999999999999999998 3211 11111222 34877766 777654 345566
Q ss_pred Ec-HHHHHhhhc---cCCccc-----------cc-----ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy14484 285 TT-DKIYNSIYY---KNNINI-----------FL-----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 344 (430)
Q Consensus 285 ~~-~~~~~~~~~---~~~~~~-----------~~-----~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~ 344 (430)
.+ +++.+.+.. .+.... .. .+..+..+.+..+.+...|+.+ +...++-+++.+++.+.
T Consensus 197 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~ 274 (380)
T TIGR03588 197 TNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRL 274 (380)
T ss_pred ECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 54 566554432 010000 00 0111222334434444444433 44566777788888888
Q ss_pred HHchhcCCCeeeEee-cc--eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------
Q psy14484 345 LTSLITHPKIINFRQ-KG--MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 397 (430)
Q Consensus 345 l~~l~~~~~~~~~~~-~g--~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------ 397 (430)
|..+..........+ .. .++.+.+. .. .... .+.+.+.|.++||.+...
T Consensus 275 L~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~~--r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~ 350 (380)
T TIGR03588 275 LKDLPYFTPLTIPLGSKSAWHLYPILLD-QE-FGCT--RKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAEN 350 (380)
T ss_pred hcCCCCccCCCCCCCCEeEEEEEEEEEC-Cc-CCCC--HHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHH
Confidence 877632211111001 11 12222232 21 0011 367889999999866410
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...+++.++...|++|++.+++.|+++|
T Consensus 351 ~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 351 FYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred HHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 1457777787889999999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=139.06 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=120.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++...+++++++++.+ .+.+++++||++|+..++..++. ++++||+.++.|++......
T Consensus 52 sr~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~~l~~--------~Gd~Vl~~~~~y~~t~~~~~------- 114 (418)
T TIGR01326 52 SRLMNPTTDVLEQRIAALEG--GVAALAVASGQAAITYAILNLAQ--------AGDNIVSSSYLYGGTYNLFK------- 114 (418)
T ss_pred ECCCChhHHHHHHHHHHHhC--CCeEEEEccHHHHHHHHHHHHhC--------CCCEEEEECCCcHHHHHHHH-------
Confidence 35677888999999999995 46889999999999999987764 56788998888876422110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
........+..+++.+ |+++++++++ +++++|++|. ++|++|.+.+ +++|.++
T Consensus 115 --~~~~~~G~~v~~v~~~-----------------d~~~l~~~l~---~~t~~V~le~-p~NPtg~v~d----l~~I~~l 167 (418)
T TIGR01326 115 --HTLKRLGIEVRFVDPD-----------------DPEEFEKAID---ENTKAVFAET-IGNPAINVPD----IEAIAEV 167 (418)
T ss_pred --HHHHHcCcEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCeecC----HHHHHHH
Confidence 0011112233344322 7788998885 4678899999 9999997776 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcH
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD 287 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~ 287 (430)
|+++|+++|+||+++ .+.. .......+|++ +++|.++|.+.++|++++++
T Consensus 168 a~~~~i~livD~t~~-~~~~-----~~~l~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 168 AHAHGVPLIVDNTFA-TPYL-----CRPIDHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred HHHcCCEEEEECCCc-hhhc-----CCchhcCCeEEEECccccccCCccceEEEEEec
Confidence 999999999999986 2211 11223346776 67899998337999988864
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.3e-14 Score=137.14 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++...++++.++++.+ .+..++++||++|+.++++++.. +++.||+..+.|++.....
T Consensus 59 r~~~p~~~~le~~lA~l~g--~~~al~~~SG~~Ai~~al~all~--------pGd~VIv~~~~y~~t~~~~--------- 119 (427)
T PRK05994 59 RITNPTNAVLEERVAALEG--GTAALAVASGHAAQFLVFHTLLQ--------PGDEFIAARKLYGGSINQF--------- 119 (427)
T ss_pred CCCCccHHHHHHHHHHHhC--CCcEEEEcCHHHHHHHHHHHHhC--------CCCEEEEecCcchhHHHHH---------
Confidence 4455677889999999984 45688999999999999988764 6688999999998752211
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
..........+.+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 120 ~~~~~~~G~~v~~vd~~-----------------d~~~l~~ai~---~~tklV~ves-p~NptG~v~d----l~~I~~la 174 (427)
T PRK05994 120 GHAFKSFGWQVRWADAD-----------------DPASFERAIT---PRTKAIFIES-IANPGGTVTD----IAAIAEVA 174 (427)
T ss_pred HHHHHhcCcEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCeecC----HHHHHHHH
Confidence 00011112233344332 6788888885 4789999999 9999998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEE
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMT 285 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~ 285 (430)
+++|+++|+|++++ .+. ........+|+++ ++|.++|..-.+|+++.
T Consensus 175 ~~~gi~livD~a~a-~~~-----~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 175 HRAGLPLIVDNTLA-SPY-----LIRPIEHGADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred HHcCCEEEEECCcc-ccc-----cCCccccCCcEEEEcCccccCCCCCcEEEEEE
Confidence 99999999999986 211 1222345678775 66999872236776655
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-14 Score=135.17 Aligned_cols=285 Identities=15% Similarity=0.183 Sum_probs=167.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
...+..+++++.++++++ .+.+++++||+.|+..++. +.. +++.||+.++.|++.......
T Consensus 44 ~~~p~~~~le~~la~l~g--~~~~l~~~sG~~al~~~l~-ll~--------~Gd~Vl~~~~~y~~~~~~~~~-------- 104 (378)
T TIGR01329 44 SGNPTRTALESLLAKLDK--ADRAFAFSSGMAALDVITR-LLN--------NGDEIIAGDDLYGGTDRLLTQ-------- 104 (378)
T ss_pred CCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHH-HhC--------CCCEEEEcCCCchHHHHHHHH--------
Confidence 345678899999999985 3678888999999887765 332 567888888888654211100
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
..........+++.. |+++++++++ +++++|++|. +.|++|.+.+ +++|.++|+
T Consensus 105 -~~~~~G~~v~~vd~~-----------------d~~~le~~i~---~~tklv~le~-psnptg~v~d----l~~I~~la~ 158 (378)
T TIGR01329 105 -VVPRSGVVVVHVDTT-----------------DLDKVKAALG---PKTKLVLLES-PTNPLQKIVD----IRKISEMAH 158 (378)
T ss_pred -HHHHcCcEEEEeCCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCCeeec----HHHHHHHHH
Confidence 001112333444432 6788888885 5788999999 9999997777 999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCC-ccccEEEEEcH-HHHHhhhccCCcccccccCCCC
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG-YLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG-~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
++|+++|+|+++. .+..... . ....|+++ ++|.++|+ ....|++++++ .+.+.+.. ........
T Consensus 159 ~~g~~vivD~a~~-~~~~~~~--l---~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~------~~~~~G~~ 226 (378)
T TIGR01329 159 AQNALVVVDNTMM-SPLLCNP--L---ELGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYF------LQNSTGSG 226 (378)
T ss_pred HcCCEEEEECCCc-ccccCCh--h---hcCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHH------HHHhcCCc
Confidence 9999999999974 2111111 1 22457764 56988863 23477887754 44454543 11111222
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.++..+..+...|+.+ +...++-.+++..+.+.|++.+ .+|.+. ...+.|.++.|++. +
T Consensus 227 ~~~~~a~l~~~~l~tl--~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~-~--- 300 (378)
T TIGR01329 227 LAPFDCWLLLRGIKTL--AIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG-S--- 300 (378)
T ss_pred CCHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC-C---
Confidence 3444332222222211 1223444445555555554321 112111 12356788888886 3
Q ss_pred cchhHHHHHHHHHHHCCcEEe----------e------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLR----------P------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~----------~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+.+|+..|...++.++ | ..+.+||++.+. +.+.+++.|+++|+
T Consensus 301 --~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE----~~~dl~~dl~~al~ 374 (378)
T TIGR01329 301 --VALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIE----DVDDLISDLDIAFV 374 (378)
T ss_pred --HHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHH
Confidence 1113567777644443322 1 025788876644 56666777777765
Q ss_pred H
Q psy14484 427 E 427 (430)
Q Consensus 427 ~ 427 (430)
+
T Consensus 375 ~ 375 (378)
T TIGR01329 375 T 375 (378)
T ss_pred h
Confidence 4
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=133.43 Aligned_cols=325 Identities=15% Similarity=0.125 Sum_probs=199.9
Q ss_pred EEEecccccccccCCCC--CHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHH
Q psy14484 35 RYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE 108 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~ 108 (430)
..|++.| -++||++ +-.-.+++.+.++++... ..-.+..+.+.++++..++.++ .++.+.| +-|...|.
T Consensus 137 ~~lNlgS---YNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g-~e~a~vF-~mGf~TNs 211 (519)
T KOG1357|consen 137 RCLNLGS---YNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLG-VEDAIVF-SMGFATNS 211 (519)
T ss_pred eeeeecc---cccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcC-CcceEEE-eccccccc
Confidence 4566544 4666653 333344444455554432 1123556888999999999985 4444444 55566666
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.-+-.+. ++...+.-+.--|++......+++.- .+. +.| ||+
T Consensus 212 ~~~p~l~---------~~gsLIiSDelNHaSi~~GaRLSgAt------------iRV--fkH---------------Ndm 253 (519)
T KOG1357|consen 212 MNIPSLL---------GKGSLIISDELNHASLITGARLSGAT------------TRV--FRH---------------NDM 253 (519)
T ss_pred cCcceee---------cCCcceeeccccchheeccccccCce------------EEE--Eec---------------CCH
Confidence 6655554 44556666777888766666555521 122 232 388
Q ss_pred HHHHHHHHhC----------CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-C-CCcccccc
Q psy14484 189 FDLEILLKKN----------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-C-GRTGKFFA 256 (430)
Q Consensus 189 ~~le~~l~~~----------~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g-~-g~~g~~~~ 256 (430)
.+||+.|++. +-+...+++|. +.++.|+++. |.++..+++|+.++|+.||+|+. . |++| .+.
T Consensus 254 ~~LEr~Lrd~I~~gqP~Thrp~kki~iiveg-iysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tG-rgv 327 (519)
T KOG1357|consen 254 QGLERLLRDAIVYGQPKTHRPWKKILICVEG-IYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATG-RGV 327 (519)
T ss_pred HHHHHHHHHHHhcCCCCcCCcchheeeeecc-ceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCC-cce
Confidence 8999998875 22456788899 9999999988 89999999999999999999992 2 2333 345
Q ss_pred cccCCCCC---cee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----
Q psy14484 257 CEHAEIWP---DFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---- 327 (430)
Q Consensus 257 ~~~~~~~~---d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---- 327 (430)
.+.+++.| |++ +|.|+++.+ -|++.+++++.+.+.. ......+.++. +|+.+.-....+..+..
T Consensus 328 ce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~lrt--~s~~~~yat~~--sppvaqq~~ssl~~i~G~dgt 400 (519)
T KOG1357|consen 328 CEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYLRT--PSPSALYATSL--SPPVAQQILTSVKHIMGEDGT 400 (519)
T ss_pred eeccCCCchhheeecceehhhcccc---cceecCcHHHHhhhcc--CCCceeecccC--ChHHHHHHHHHHHhhcCCCcc
Confidence 56666653 443 788988753 2678999999988775 22222233222 33333344455554432
Q ss_pred ---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee--cC---
Q psy14484 328 ---DNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--IG--- 398 (430)
Q Consensus 328 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~--~~--- 398 (430)
....++++++..+|+..|+.. ..+..-.... .+..+-.. .. + -..+.+.|+++++.+.. .+
T Consensus 401 ~~g~~k~~~l~~ns~yfr~~l~~~---gfivyG~~dSpVvplll~~-~~---k---~~~f~r~~l~~nigvVvvgfPatp 470 (519)
T KOG1357|consen 401 NRGRQKIERLAENSRYFRWELQKM---GFIVYGNNDSPVVPLLLYG-PA---K---IVAFSREMLERNIGVVVVGFPATP 470 (519)
T ss_pred cHHHHHHHHHHhhhHHHHHhhhcC---cEEEecCCCCCcceeeecC-cc---c---ccHHHHHHHhcCceEEEEeCCCch
Confidence 224567777888888888654 1111100000 01111111 10 1 14678888888655442 22
Q ss_pred ---CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 399 ---NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 399 ---~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...||+.+..++.|+++.+++.+.++=
T Consensus 471 l~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g 500 (519)
T KOG1357|consen 471 LLESRARFCLSASHTKEDLDRALEVIDRVG 500 (519)
T ss_pred HHHhHHHhhhcccccHHHHHHHHHHHhhhc
Confidence 456999999999999999999987753
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-14 Score=136.15 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+....|++.++++.+ .+..++++||+.|+..++..+.. ++++|++.++.|++.......
T Consensus 60 r~~~p~~~~Le~~lA~leg--~~~al~~~sG~~Ai~~al~~ll~--------~GD~Vlv~~~~y~~t~~~~~~------- 122 (431)
T PRK08248 60 RIMNPTTDVFEKRIAALEG--GIGALAVSSGQAAITYSILNIAS--------AGDEIVSSSSLYGGTYNLFAH------- 122 (431)
T ss_pred CCCCchHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEccCchhhHHHHHHH-------
Confidence 4556778899999999984 56889999999999999987654 667899988888765322111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......++.+++.. |+++++++++ +++++|+++. ++|++|.+.+ +++|.++|
T Consensus 123 --~~~~~Gv~v~~vd~~-----------------d~e~l~~ai~---~~tklV~l~s-p~NPtG~v~d----i~~I~~la 175 (431)
T PRK08248 123 --TLPKLGITVKFVDPS-----------------DPENFEAAIT---DKTKALFAET-IGNPKGDVLD----IEAVAAIA 175 (431)
T ss_pred --HHHhCCEEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCcccC----HHHHHHHH
Confidence 011112233444332 7788988885 4688888988 8899998877 89999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEc
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~ 286 (430)
+++|+++|+|++++ .+.. ........|+++ ++|.++|...++|+++..
T Consensus 176 ~~~gi~vIvD~t~a-~~~~-----~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 176 HEHGIPLIVDNTFA-SPYL-----LRPIEHGADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred HHcCCEEEEeCCCC-cccc-----CChhHcCCCEEEEcCccccCCCCCceEEEEEe
Confidence 99999999999975 1111 111133467764 569998843678877663
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-13 Score=129.55 Aligned_cols=300 Identities=16% Similarity=0.149 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhh-hhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~-~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
+...++++.+++.++ .+++++++||++|+..|+.++.... ...+..+++.||+..++|.+........+.
T Consensus 63 ~~~~~fe~~lA~~~g--~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~------- 133 (438)
T PRK15407 63 RFNDAFEKKLAEFLG--VRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGL------- 133 (438)
T ss_pred hhHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCC-------
Confidence 446788899999984 4689999999999999998764210 001112568899999898765433322211
Q ss_pred hhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy14484 156 YTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 234 (430)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 234 (430)
..++++.. ..+.. |++++++.+. +++++|++.+ +. |... .+++|.++|++
T Consensus 134 ------~pv~vdvd~~~~~i------------d~~~le~~i~---~~tkaVi~~~-~~---G~p~----dl~~I~~la~~ 184 (438)
T PRK15407 134 ------VPVFVDVELPTYNI------------DASLLEAAVS---PKTKAIMIAH-TL---GNPF----DLAAVKAFCDK 184 (438)
T ss_pred ------EEEEEecCCCcCCc------------CHHHHHHHcC---cCCeEEEEeC-CC---CChh----hHHHHHHHHHH
Confidence 22333332 11222 7889998885 5678888876 42 3233 38999999999
Q ss_pred cCCEEEEeccccCCCC--cccccccccCCCCCceeeee----cccCCCccccEEEEEcH-HHHHhhh---ccCCcc----
Q psy14484 235 YNIHLIADEIAVGCGR--TGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTTD-KIYNSIY---YKNNIN---- 300 (430)
Q Consensus 235 ~gi~li~DEv~~g~g~--~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~~-~~~~~~~---~~~~~~---- 300 (430)
+|+++|+|++|+ +|- .|.. .|-.-|+.+|| |.++.| .-|+++.+. ++.+.+. ..+...
T Consensus 185 ~gi~vIeDaa~a-~G~~~~g~~-----~G~~gd~~~fSf~~~k~~~~g--eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~ 256 (438)
T PRK15407 185 HNLWLIEDNCDA-LGSTYDGRM-----TGTFGDIATLSFYPAHHITMG--EGGAVFTNDPLLKKIIESFRDWGRDCWCAP 256 (438)
T ss_pred CCCEEEEECccc-hhhhcCCee-----eeccCceEEEeCCCCCCcccc--CceEEEECCHHHHHHHHHHHHhCccccccc
Confidence 999999999997 432 2221 12223777766 667655 247888764 4433322 111100
Q ss_pred ---------------------c--c---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-CCC
Q psy14484 301 ---------------------I--F---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPK 353 (430)
Q Consensus 301 ---------------------~--~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~ 353 (430)
. + ..+..+..+.+.++.++.-|+.+ ++..++-+++.+++.+.|..+.. ...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~~~~~ 334 (438)
T PRK15407 257 GCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLEDFLIL 334 (438)
T ss_pred ccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 0 0 01222334556566666666644 44667777788888888876521 111
Q ss_pred eeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-----c------------------------CCEEEE
Q psy14484 354 IINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-----I------------------------GNTVYL 403 (430)
Q Consensus 354 ~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-----~------------------------~~~lR~ 403 (430)
.....+ ...++.+.+.-....... .+++.+.|.++||-... . ...+.+
T Consensus 335 ~~~~~~~~~~~~~~~i~~~~~~~~~--Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~L 412 (438)
T PRK15407 335 PEATPNSDPSWFGFPITVKEDAGFT--RVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWI 412 (438)
T ss_pred CcCCCCCeeEEEEEEEEECCcCCCC--HHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEe
Confidence 110111 122223322201111011 26799999999985431 0 122444
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
-++...++++++.+++.|++++.
T Consensus 413 P~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 413 GVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh
Confidence 44455699999999999998875
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-13 Score=132.66 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
...+...+|++.++++.+ .+.++.++||+.|+.+++..+.. +++.||+..+.|.+.......
T Consensus 58 ~~nPtv~~lE~~la~leg--~~~av~~~SG~aAi~~al~all~--------~GD~VI~~~~~Y~~T~~~~~~-------- 119 (432)
T PRK06702 58 IGNPTLAAFEQKLAELEG--GVGAVATASGQAAIMLAVLNICS--------SGDHLLCSSTVYGGTFNLFGV-------- 119 (432)
T ss_pred CCCcHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHhcC--------CCCEEEECCCchHHHHHHHHH--------
Confidence 345778899999999984 45688899999999999987654 678999999999765322111
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
....+..++.++.... |+++++++++ +++++|++|. +.|+.+.+.. +++|.++|+
T Consensus 120 -~l~~~Gi~v~~vd~~~----------------d~~~l~~~I~---~~Tk~I~~e~-pgnP~~~v~D----i~~I~~iA~ 174 (432)
T PRK06702 120 -SLRKLGIDVTFFNPNL----------------TADEIVALAN---DKTKLVYAES-LGNPAMNVLN----FKEFSDAAK 174 (432)
T ss_pred -HHHHCCCEEEEECCCC----------------CHHHHHHhCC---cCCeEEEEEc-CCCccccccC----HHHHHHHHH
Confidence 1111223344443311 7789999996 5788999999 8888886766 999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEE
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVM 284 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~ 284 (430)
++|+++|+|+++. .+..+..+....|++ +++|.++|..--+|.++
T Consensus 175 ~~gi~livD~T~~------tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v 221 (432)
T PRK06702 175 ELEVPFIVDNTLA------TPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIV 221 (432)
T ss_pred HcCCEEEEECCCC------chhhCChhhcCCCEEEEccccccCCCcceeceEE
Confidence 9999999999863 223334344456665 67898887323444433
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=129.96 Aligned_cols=315 Identities=13% Similarity=0.067 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHHhhcCCC-----------C--CeEEEcCCchHHHHHHHHHHHHhhhhc-CC----------------C
Q psy14484 75 THKPVIKLSEKLSSLTQYK-----------L--GHCFYGSDGASAVEVALKMSFHYWYNK-GF----------------L 124 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~-----------~--~~v~~~~sgteA~~~al~~~~~~~~~~-g~----------------~ 124 (430)
.++....+.+++++++... + ..-.|++|||+||..|+.++|...... |. .
T Consensus 127 ~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~ 206 (522)
T TIGR03799 127 FTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYG 206 (522)
T ss_pred hHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhcc
Confidence 3466677778888776311 1 235789999999999999999753211 00 0
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCC
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNK 201 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~ 201 (430)
.++.+|..+..-|-+..-+....+. -...++.++.+...+. |+++|++.+++. ...
T Consensus 207 ~~~~~v~~S~~~H~S~~kaa~~lgl---------g~~~v~~vp~d~~g~~------------d~~~L~~~i~~~~~~g~~ 265 (522)
T TIGR03799 207 YDGLAILVSERGHYSLGKAADVLGI---------GRDNLIAIKTDANNRI------------DVDALRDKCAELAEQNIK 265 (522)
T ss_pred CCceEEEECCCchHHHHHHHHHcCC---------CcccEEEEEeCCCCcC------------CHHHHHHHHHHHHHCCCC
Confidence 1233555555666553322221110 0113455666554444 899999988642 223
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCcc
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYL 278 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~ 278 (430)
+.+|+... ..+++|.+.| +++|.++|+++|+++++|.+|.|....-..+.....++ ..|.++++ |.+.+. .
T Consensus 266 ~~~vvata-Gtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P-~ 339 (522)
T TIGR03799 266 PLAIVGVA-GTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP-M 339 (522)
T ss_pred cEEEEEEe-cCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcC-c
Confidence 45555555 6668899999 99999999999999999999975421111000112344 57999888 766654 5
Q ss_pred ccEEEEEcH-HHHHhhhcc------CCcccccccCCCCCC-HHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHc
Q psy14484 279 PLSLVMTTD-KIYNSIYYK------NNINIFLHSHSYSGN-PLACCAALATLEIFNKDN---ILQRISQDMKKITKALTS 347 (430)
Q Consensus 279 ~ig~~~~~~-~~~~~~~~~------~~~~~~~~~~t~~~~-~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~ 347 (430)
.+|+++.+. .+.+.+... .....+ ...++.+. +......+.+|+.+.... +.++..+++++|.+.|++
T Consensus 340 g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~-~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~ 418 (522)
T TIGR03799 340 GAGMVLFKDPALMSAIEHHAEYILRKGSKDL-GSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQ 418 (522)
T ss_pred ccEEEEEeCHHHHHHhccCcchhcCCCCCcc-ccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 789998874 444443320 000000 00112121 122234567777665544 445566778888887765
Q ss_pred hhcCCCeeeEeecceEEEEEEeecCCc-----------------cchhHHHHHHHHHHHCCcEEee-c--------C---
Q psy14484 348 LITHPKIINFRQKGMIWAFDVIIEDPE-----------------QIETFSKKFFVAALKNELLLRP-I--------G--- 398 (430)
Q Consensus 348 l~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------~~~~~a~~~~~~l~~~Gv~~~~-~--------~--- 398 (430)
..++..+. ++.-.+++|.+. +... ....+..++.+++.+.|..... . +
T Consensus 419 ~~~~el~~--~p~l~iv~Fr~~-p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~ 495 (522)
T TIGR03799 419 QPDFELVT--EPELCLLTYRYV-PEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPT 495 (522)
T ss_pred CCCeEEec--CCCccEEEEEEe-ChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCc
Confidence 53322221 222334555543 2110 0112235677778888876543 1 1
Q ss_pred CEEEEeC-CCCCCHHHHHHHHHH
Q psy14484 399 NTVYLMP-PYILNKNEIQHMTSA 420 (430)
Q Consensus 399 ~~lR~~~-~~~~t~e~i~~~~~~ 420 (430)
..+|+++ +..+|+++|+.+++.
T Consensus 496 ~~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 496 VVFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEEecCCCCCHHHHHHHHHH
Confidence 2588766 556788999887754
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-14 Score=132.93 Aligned_cols=316 Identities=8% Similarity=0.019 Sum_probs=183.0
Q ss_pred CCHHHHHHHHHHHhhcccccc--CCCC------CHHHHHHHHHHHhhcCC-CCCeEEEcCC-chHHHHHHHHHHHHhhhh
Q psy14484 51 SNSYINKALKNQLNKLEHVML--SNLT------HKPVIKLSEKLSSLTQY-KLGHCFYGSD-GASAVEVALKMSFHYWYN 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~--~~~~------~~~~~~l~~~l~~~~~~-~~~~v~~~~s-gteA~~~al~~~~~~~~~ 120 (430)
-+++|++|+.+.+........ .... ....++.++.++++++. ..++|+|++| +|+|++.++..+...
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~--- 86 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD--- 86 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC---
Confidence 478999999998755321111 0111 15667888999999975 4567999977 999999998877421
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH-HHHHHHHHHhCC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA-IFDLEILLKKNH 199 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~ 199 (430)
+ .+..+|+ .+.|..+..... .....+...++.+...... + .+..+..+ .
T Consensus 87 -~--~~~~~i~-~g~~~~~~~~~a------------~~~g~~~~~~~~~~~g~~~-----------~~~~~~~~~~---~ 136 (355)
T cd00611 87 -K--GTADYVV-TGAWSAKAAKEA------------KRYGGVVVIVAAKEEGKYT-----------KIPDVETWDL---A 136 (355)
T ss_pred -C--CeEEEEE-CCHHHHHHHHHH------------HhcCCCcEEEecccccCCC-----------CCCCHhhcCC---C
Confidence 1 1222222 222211110000 0111233444443211000 1 11111223 2
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP 279 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ 279 (430)
+++++|.+.. +.+.+|...+ ++++.||+++++|.+|+ +|.. ...++.++ .++.+--|.+|. ..
T Consensus 137 ~~~~lV~~~h-~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~~--~idv~~~~--~~~ss~~K~lGP--~G 199 (355)
T cd00611 137 PDAAYVHYCS-NETIHGVEFD---------EVPDTGGVPLVADMSSN-ILSR--PIDVSKFG--VIYAGAQKNLGP--AG 199 (355)
T ss_pred CCCCEEEEeC-CcccccEEcc---------eecccCCCeEEEEcccc-ccCC--CCCHHHhC--EEEeecccccCC--Cc
Confidence 4678888888 8888886633 45566999999999998 5322 23333333 222223486642 45
Q ss_pred cEEEEEcHHHHHhhhccCCccccc-------ccC-CCCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHc
Q psy14484 280 LSLVMTTDKIYNSIYYKNNINIFL-------HSH-SYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTS 347 (430)
Q Consensus 280 ig~~~~~~~~~~~~~~~~~~~~~~-------~~~-t~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~ 347 (430)
+|.+++++++.+.+.+. ..... ... ..++|.....+..++|+.+++. +..++.+++.+++++.|++
T Consensus 200 ~g~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~ 277 (355)
T cd00611 200 VTVVIVRKDLLGKARKI--TPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN 277 (355)
T ss_pred eEEEEECHHHHhhcccC--CCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999988765431 00010 111 1244555666777888877654 3456667888888888887
Q ss_pred hhcCC-CeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 348 LITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 348 l~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+.++. ..... ...+.++.|... .. .+...+.+.+.++|+...++ .+.+|+++..++|++||+.++++|+
T Consensus 278 ~~gl~~~~~~~~~rs~~vvsf~~~-~~-----~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~ 351 (355)
T cd00611 278 SNGFYRGPVDKRARSRMNVPFRLG-KE-----ELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMK 351 (355)
T ss_pred CccccccCCCHHHcCceEEEEEcC-Ch-----hhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHH
Confidence 73321 11111 112245666655 31 11245556788899984443 2689999999999999999999998
Q ss_pred HH
Q psy14484 423 QT 424 (430)
Q Consensus 423 ~~ 424 (430)
++
T Consensus 352 ~~ 353 (355)
T cd00611 352 EF 353 (355)
T ss_pred HH
Confidence 74
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-12 Score=126.40 Aligned_cols=324 Identities=12% Similarity=0.057 Sum_probs=188.5
Q ss_pred CCHHHHHHHHHHHhhcCCCC-------CeEEEcCCchHHHHHHHHHHHHhhhhc-CCCCCcE-EEEEcCCCCCcchhhhc
Q psy14484 75 THKPVIKLSEKLSSLTQYKL-------GHCFYGSDGASAVEVALKMSFHYWYNK-GFLNKKK-FICLQNSYHGETLGALA 145 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~-------~~v~~~~sgteA~~~al~~~~~~~~~~-g~~~~~~-vl~~~~~yhg~~~~~~~ 145 (430)
..+....+.++++++++.+. ..-+|++||||||..|+.++|.....+ |..+..+ ++..+..-|-+..=++.
T Consensus 168 ~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ 247 (539)
T PLN02590 168 ATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACL 247 (539)
T ss_pred hHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHH
Confidence 34666778889999986332 236789999999999999998754321 2222222 33334344433222222
Q ss_pred cCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccC
Q psy14484 146 VTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMY 220 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~ 220 (430)
+.+-. ...++.++.+. .++. |+++|+++|.+. ...+.+|+..- ...++|.+.|
T Consensus 248 ilGlg---------~~~vr~Vp~d~~~~~~m------------d~~~L~~~I~~d~~~g~~P~~VvaTa-GTT~tGaiDp 305 (539)
T PLN02590 248 IGGIH---------EENIRLLKTDSSTNYGM------------PPESLEEAISHDLAKGFIPFFICATV-GTTSSAAVDP 305 (539)
T ss_pred HcCCC---------cccEEEEeCCCCCCCcC------------CHHHHHHHHHHHHhcCCCcEEEEEEe-CCCCCcccCC
Confidence 22110 11235555552 2233 899999999753 23456666666 7777898888
Q ss_pred ChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH--HHHhhhc
Q psy14484 221 DSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK--IYNSIYY 295 (430)
Q Consensus 221 ~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~--~~~~~~~ 295 (430)
+++|.++|++||++||||.++.|+...-.....-..++ ..|=+++. |.+.-. ++.|+++++.. +.+.+..
T Consensus 306 ----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p-~~cg~llvr~~~~l~~a~~~ 380 (539)
T PLN02590 306 ----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFAN-QTCSPLWVKDRYSLIDALKT 380 (539)
T ss_pred ----HHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcC-cCEEEEEecCHHHHHHHhhc
Confidence 99999999999999999999987642211110011233 25655544 777666 58888888853 2222211
Q ss_pred c------CC--c---ccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH---HHHHHHHHHHHHchhcCCCeeeEeecc
Q psy14484 296 K------NN--I---NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRI---SQDMKKITKALTSLITHPKIINFRQKG 361 (430)
Q Consensus 296 ~------~~--~---~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~~~~~~g 361 (430)
. .. . ..+...+--.+-.+.....+.+|+.+..+.+.+.+ -+++++|.+.|++...+..+. ++.=
T Consensus 381 ~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~--~~~l 458 (539)
T PLN02590 381 NPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVT--TRYF 458 (539)
T ss_pred CHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCce
Confidence 0 00 0 00001111112234556667777776666665555 456777777776542222221 2233
Q ss_pred eEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEee-c---C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 362 MIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRP-I---G-NTVYLMP-PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 362 ~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~-~---~-~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|.+. +.... ...+..++.+++.+.|.+... . + .++|+++ +..+++++|+.+++.|.+...++
T Consensus 459 ~iVcFr~~-~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~ 533 (539)
T PLN02590 459 SLVCFRLA-PVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533 (539)
T ss_pred EEEEEEec-CCCCCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34455554 31111 123346788888888765443 2 2 4789776 55678999999999999887654
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=132.51 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
..+..++++++++++. +.+.+++++||+.|+..++. +.. +++.||+.++.|++........
T Consensus 131 gnpt~~aLE~~lA~le--g~e~ai~~~SG~aAi~~il~-ll~--------~GD~VI~~~~~y~~t~~ll~~~-------- 191 (464)
T PLN02509 131 GNPTRDALESLLAKLD--KADRAFCFTSGMAALSAVTH-LIK--------NGEEIVAGDDVYGGSDRLLSQV-------- 191 (464)
T ss_pred CCHHHHHHHHHHHHHh--CCCEEEEeCcHHHHHHHHHH-HhC--------CCCEEEEcCCchhhHHHHHHHH--------
Confidence 4577899999999998 55677888999988765553 332 6678999999987653211110
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN 234 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~ 234 (430)
.........+++.. |++++++++. +++++|++|. ++|++|.+.+ +++|.++|++
T Consensus 192 -l~~~G~~v~~vd~~-----------------d~e~l~~ai~---~~TklV~les-PsNPtG~i~D----l~~I~~lAk~ 245 (464)
T PLN02509 192 -VPRSGVVVKRVNTT-----------------NLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKIAEMAHA 245 (464)
T ss_pred -HHHCCeEEEEeCCC-----------------CHHHHHHhCC---cCCeEEEEEC-CCCCCCCHHH----HHHHHHHHHH
Confidence 00011122233221 6788888884 5688999999 9999997766 9999999999
Q ss_pred cCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCC-CccccEEEEEcH-HHHHhhhccCCcccccccCCCCC
Q psy14484 235 YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITG-GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSG 310 (430)
Q Consensus 235 ~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~g-G~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~ 310 (430)
+|+++|+||++. .+..+. ..+...|+++ ++|.++| |..-.|+++++. .+.+.+.. .........
T Consensus 246 ~g~~lIVD~A~a-~~~~~~-----pl~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~------~~~~~g~~l 313 (464)
T PLN02509 246 QGALVLVDNSIM-SPVLSR-----PLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF------LQNSEGSGL 313 (464)
T ss_pred cCCEEEEECCcc-ccccCC-----hhhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH------HHHhcCCCc
Confidence 999999999985 222222 1233467764 5699987 322245666544 33333221 001111123
Q ss_pred CHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCCcc
Q psy14484 311 NPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDPEQ 375 (430)
Q Consensus 311 ~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~~~ 375 (430)
++..+..+...|+.+. ...++..++++++.+.|++.+. +|++. ...+-|.++.|++. +
T Consensus 314 ~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~-~---- 386 (464)
T PLN02509 314 APFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S---- 386 (464)
T ss_pred CHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeC-C----
Confidence 5565555555565442 3456666777777777765321 22211 13456888888775 3
Q ss_pred chhHHHHHHHHHH--HCC--------cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 376 IETFSKKFFVAAL--KNE--------LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 376 ~~~~a~~~~~~l~--~~G--------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+.+.+|.+.|. ..+ ++..| ..+.+|+++.+. +.+.+++.|+++|+.
T Consensus 387 -~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGlE----~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 387 -VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIE----DVDDLISDLDIAFRT 461 (464)
T ss_pred -HHHHHHHHHcCCcceEcccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccC----CHHHHHHHHHHHHcc
Confidence 122455666553 111 11111 125789976644 566677777777653
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-13 Score=128.52 Aligned_cols=310 Identities=17% Similarity=0.149 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEc
Q psy14484 54 YINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133 (430)
Q Consensus 54 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~ 133 (430)
+..+++.+.++.... ....+...++++.+++.+ +.++++.++|||.|+.+|++++--. +++.|++..
T Consensus 6 e~~~~v~~~l~s~~~----~~~g~~~~~fE~~~a~~~--g~~~~~~~~sgt~Al~~al~~l~~~-------~gdeVi~p~ 72 (363)
T PF01041_consen 6 EEIDAVLEVLRSGWL----STYGPYVEEFEKEFAEYF--GVKYAVAVSSGTSALHLALRALGLG-------PGDEVIVPA 72 (363)
T ss_dssp HHHHHHHHHHHHTCC----SSSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHTTGG-------TTSEEEEES
T ss_pred HHHHHHHHHHHhCCc----cCCCHHHHHHHHHHHHHh--CCCeEEEeCChhHHHHHHHHhcCCC-------cCceEecCC
Confidence 455666666655321 222577789999999999 6789999999999999999985432 678899988
Q ss_pred CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc
Q psy14484 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 212 (430)
Q Consensus 134 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~ 212 (430)
-+|+.........+. ..+++.+. ++... |++.+++.+. +++++|++.+ ..
T Consensus 73 ~t~~~~~~ai~~~G~-------------~pv~~Di~~~~~~i------------d~~~~~~~i~---~~t~ai~~~h-~~ 123 (363)
T PF01041_consen 73 YTFPATASAILWAGA-------------EPVFVDIDPETLNI------------DPEALEKAIT---PKTKAILVVH-LF 123 (363)
T ss_dssp SS-THHHHHHHHTT--------------EEEEE-BETTTSSB-------------HHHHHHHHH---TTEEEEEEE--GG
T ss_pred CcchHHHHHHHHhcc-------------EEEEEeccCCcCCc------------CHHHHHHHhc---cCccEEEEec-CC
Confidence 777765444333332 22445443 33333 8999999997 5678888766 43
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEcH-
Q psy14484 213 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTTD- 287 (430)
Q Consensus 213 ~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~~- 287 (430)
|.... +.+|.++|+++|++||.|.+|+ +|-. +.-...|-.-|+.+|| |.++.| --|+++.+.
T Consensus 124 ---G~~~d----~~~i~~~~~~~~i~lIeD~a~a-~g~~---~~g~~~G~~gd~~~fSf~~~K~i~~g--eGG~v~~~~~ 190 (363)
T PF01041_consen 124 ---GNPAD----MDAIRAIARKHGIPLIEDAAQA-FGAR---YKGRPVGSFGDIAIFSFHPTKIITTG--EGGAVVTNDP 190 (363)
T ss_dssp ---GB-------HHHHHHHHHHTT-EEEEE-TTT-TT-E---ETTEETTSSSSEEEEESSTTSSS-SS--S-EEEEESTH
T ss_pred ---CCccc----HHHHHHHHHHcCCcEEEccccc-cCce---eCCEeccCCCCceEecCCCCCCCcCC--CCeeEEecHH
Confidence 32333 9999999999999999999998 4321 1112233345888777 888654 247788864
Q ss_pred HHHHhh---hccCCc----cccc----ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee
Q psy14484 288 KIYNSI---YYKNNI----NIFL----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN 356 (430)
Q Consensus 288 ~~~~~~---~~~~~~----~~~~----~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 356 (430)
++.+.+ ...+.. .... .+..+..+.+.++.++.-|+.+ +...++-+++.+++.+.|..+.....+..
T Consensus 191 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~ 268 (363)
T PF01041_consen 191 ELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIKPPPI 268 (363)
T ss_dssp HHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEEEEGC
T ss_pred HHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 544443 221111 1111 1233444556555555555533 34566667778888888876632101111
Q ss_pred Eeec--ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------------------------CCEEEEeC
Q psy14484 357 FRQK--GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------------------------GNTVYLMP 405 (430)
Q Consensus 357 ~~~~--g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------------------------~~~lR~~~ 405 (430)
.... ..++.+.+.-++..... .+.+.+.|.++||-..+. ...+.+-.
T Consensus 269 ~~~~~~~~~~~f~i~~~~~~~~~--rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~ 346 (363)
T PF01041_consen 269 PDGAERSSYYRFPIRLPDEALAD--RDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPI 346 (363)
T ss_dssp GTTTEEBCESSEEEEETCCGCST--HHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEH
T ss_pred cccccccccccccccccccccch--HHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcC
Confidence 1111 22322322201111011 368999999999987641 13566777
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIF 422 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~ 422 (430)
+...++++++.+++.|+
T Consensus 347 ~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 347 HPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhhccC
Confidence 77789999999998875
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=133.07 Aligned_cols=163 Identities=14% Similarity=0.114 Sum_probs=114.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+...++++.++++.+ .+.+++++||++|+..++..+.. +++.||+.+..|++.......
T Consensus 60 R~~~p~~~~le~~lA~l~g--~~~av~~sSGt~Al~~al~~ll~--------~Gd~Vi~~~~~y~~t~~~~~~------- 122 (433)
T PRK08134 60 RISNPTVAVLEERVAALEG--GVGAIATASGQAALHLAIATLMG--------AGSHIVASSALYGGSHNLLHY------- 122 (433)
T ss_pred cCcChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEeCCccHHHHHHHHH-------
Confidence 4556788999999999985 34589999999999999887643 567888888888754221110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......++.+++.. |+++++++++ +++++|+++. +.|++|.+.+ +++|.++|
T Consensus 123 --~l~~~Gi~v~~vd~~-----------------d~~~l~~~i~---~~TklV~~e~-~~np~g~v~D----i~~I~~la 175 (433)
T PRK08134 123 --TLRRFGIETTFVKPG-----------------DIDGWRAAIR---PNTRLLFGET-LGNPGLEVLD----IPTVAAIA 175 (433)
T ss_pred --HHhhCCeEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCcccCcccC----HHHHHHHH
Confidence 001112233444432 6889999885 5789999999 9999998888 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEE
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMT 285 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~ 285 (430)
+++|+++|+|.+|+ .+.. ........|++++| |.++|..-.+|.++.
T Consensus 176 ~~~gi~livD~t~a-~~~~-----~~pl~~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 176 HEAGVPLLVDSTFT-TPYL-----LRPFEHGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred HHcCCEEEEECCCc-cccc-----CCchhcCCCEEEeccccccCCCCCceEEEEE
Confidence 99999999999986 2211 11123456887665 888773234666554
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-13 Score=131.96 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=112.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+....|++.++++. +.+..++++||+.|+..++..+.. +++.||+....|.+........
T Consensus 65 r~~~p~~~~Le~~lA~l~--g~~~av~~sSG~aAi~~al~all~--------~Gd~Vv~~~~~y~~t~~~~~~~------ 128 (436)
T PRK07812 65 RIMNPTQDVVEQRIAALE--GGVAALLLASGQAAETFAILNLAG--------AGDHIVSSPRLYGGTYNLFHYT------ 128 (436)
T ss_pred CCCCchHHHHHHHHHHHh--CCCeEEEEccHHHHHHHHHHHHhC--------CCCEEEEeCCcchHHHHHHHHH------
Confidence 344677889999999998 456789999999999999987654 5678888877775432211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.++..+. |+++++++++ +++++|++|. +.|+.|.+.+ +++|.++|
T Consensus 129 ---l~~~Gi~v~~vdd~~----------------d~e~l~~ai~---~~tklV~ie~-~sNp~G~v~D----l~~I~~la 181 (436)
T PRK07812 129 ---LPKLGIEVSFVEDPD----------------DLDAWRAAVR---PNTKAFFAET-ISNPQIDVLD----IPGVAEVA 181 (436)
T ss_pred ---hhcCeEEEEEECCCC----------------CHHHHHHhCC---CCCeEEEEEC-CCCCCCeecC----HHHHHHHH
Confidence 001112223332121 7888888885 5688999999 9999998888 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEc
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~ 286 (430)
+++|+++|+|++++ .+.. ........|++ +++|.++|..--+|+++..
T Consensus 182 ~~~gi~liVD~t~a-~~~~-----~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 182 HEAGVPLIVDNTIA-TPYL-----IRPLEHGADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred HHcCCEEEEECCCc-cccc-----CCchhcCCCEEEEecccccCCCCCeEEEEEEc
Confidence 99999999999875 2111 11122346766 5669998732346655553
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=130.03 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=177.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+..++....|++.|+++- +.+.+++++||+.|+..++..+.. ++++||+....|.+......
T Consensus 57 sR~~nPt~~~le~~la~LE--g~~~a~~~~SGmaAi~~~~~~ll~--------~GD~Vv~~~~~Yg~t~~l~~------- 119 (395)
T PRK08114 57 GRRGTLTHFSLQEAMCELE--GGAGCALYPCGAAAVANAILAFVE--------QGDHVLMTGTAYEPTQDFCS------- 119 (395)
T ss_pred cCCCChhHHHHHHHHHHHh--CCCeEEEEhHHHHHHHHHHHHHcC--------CCCEEEEeCCCcHHHHHHHH-------
Confidence 3566788899999999987 556888999999999998886654 56788888777766532221
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
........++.+++.. |.++++++++ +++++|++|. +.|+.|.+.+ +++|.++
T Consensus 120 --~~l~~~Gi~v~~vd~~-----------------d~~~l~~~l~---~~TrlV~~Et-psNp~~~v~D----I~~Ia~i 172 (395)
T PRK08114 120 --KILSKLGVTTTWFDPL-----------------IGADIAKLIQ---PNTKVVFLES-PGSITMEVHD----VPAIVAA 172 (395)
T ss_pred --HHHHhcCcEEEEECCC-----------------CHHHHHHhcC---CCceEEEEEC-CCCCCCEeec----HHHHHHH
Confidence 1111122333444321 6788898885 5789999999 9999998888 9999999
Q ss_pred HHhcC--CEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc-cccEEEEEcHHHHHhhhccCCcccccccC
Q psy14484 232 CNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 232 ~~~~g--i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~-~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (430)
|+++| +++++|.+++ . +. .++...+..|+++.| |.++|.. .-.|.++.+++..+.+.. . ....+.
T Consensus 173 a~~~g~g~~lvVDnT~a-~---p~--~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~---~-~~~~G~ 242 (395)
T PRK08114 173 VRSVNPDAVIMIDNTWA-A---GV--LFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRE---N-SYLMGQ 242 (395)
T ss_pred HHHhCCCCEEEEECCCc-c---cc--ccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHH---H-HHhccC
Confidence 99984 9999999986 2 11 144445567888655 9998842 346666767766554442 0 011122
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeec
Q psy14484 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIE 371 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~ 371 (430)
..+|..+.-....|+.+. -..++..+++..+.+.|+..+ .+|.+. ...+-|.++.|+++ .
T Consensus 243 --~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~-~ 317 (395)
T PRK08114 243 --MVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLK-K 317 (395)
T ss_pred --CCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEec-C
Confidence 224443332222222211 123444555666666665321 122211 13467889999987 4
Q ss_pred CCccchhHHHHHHHHHHH--CC--------cEE--ee--------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAALK--NE--------LLL--RP--------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~--~G--------v~~--~~--------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
... .+.+.+|.+.|.- .+ ++. .| .++.+|+++.+ |+.+.+++.|+++|
T Consensus 318 ~~~--~~~~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al 391 (395)
T PRK08114 318 KLT--DEQLANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGF 391 (395)
T ss_pred ccc--HHHHHHHHHhCCcceeecccCCccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHH
Confidence 211 1113456665431 11 111 00 12578997664 45677777777777
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
+++
T Consensus 392 ~~~ 394 (395)
T PRK08114 392 ARI 394 (395)
T ss_pred Hhh
Confidence 654
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-12 Score=125.40 Aligned_cols=320 Identities=12% Similarity=0.093 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc
Q psy14484 51 SNSYINKALKNQLNKLEHVM---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~ 127 (430)
-++++.+++.+.+..+.... ..+...+....+++.+++++ +.+.++++++|+.|+..++..+ . +++
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~--Gae~a~vv~sgtaAl~l~l~~l-~--------~Gd 166 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT--GAEDALVVNNNAAAVLLALNAL-A--------AGK 166 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHh-C--------CCC
Confidence 36899999998876543110 00112344568889999998 4457889999999999888653 2 556
Q ss_pred EEEEEcC-CCC-CcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 128 KFICLQN-SYH-GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 128 ~vl~~~~-~yh-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
.||+.+. .|+ |.+. .+.. ..........++... .. .++++++++++ ++++++
T Consensus 167 eVIvs~~e~~~~ggs~---~i~~------~~~~~G~~l~~v~~~--~~------------t~~~dle~aI~---~~TklV 220 (464)
T PRK04311 167 EVIVSRGELVEIGGAF---RIPD------VMRQAGARLVEVGTT--NR------------THLRDYEQAIN---ENTALL 220 (464)
T ss_pred EEEEcchhhhhcCcch---hhHH------HHHHCCcEEEEECCC--CC------------CCHHHHHHhcC---ccCeEE
Confidence 7777654 232 1110 0000 001111222333321 11 16788888885 567888
Q ss_pred EEccccccC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCCCC---c---ccccccccCCCCCceeeee--ccc
Q psy14484 206 IIEPLVQCA--GG--MIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR---T---GKFFACEHAEIWPDFLCLS--KGI 273 (430)
Q Consensus 206 i~ep~v~~~--~G--~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~---~---g~~~~~~~~~~~~d~~~~s--K~l 273 (430)
+++. ..|. .| ...+ +++|.++|++||+++|+|....-++- . +.+...+.....+|+++|| |.+
T Consensus 221 ~~vh-~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~L 295 (464)
T PRK04311 221 LKVH-TSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLL 295 (464)
T ss_pred EEEc-CCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccc
Confidence 8877 6553 23 3445 99999999999999999985321110 0 1111112223457999988 888
Q ss_pred CCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCH------------HHHHHHHHH
Q psy14484 274 TGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNI------------LQRISQDMK 339 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~------------~~~~~~~~~ 339 (430)
+|. ..|++++++++++.+...+ ..-.+..+-..+++-.++|..+-+ ..+ .++..++++
T Consensus 296 gGp--~~G~i~g~~~li~~l~~~~------~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~ 367 (464)
T PRK04311 296 GGP--QAGIIVGKKELIARLKKHP------LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAE 367 (464)
T ss_pred cCC--ceEEEEEcHHHHHHHhhch------hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHH
Confidence 875 3788999999888776411 111111122222223333432211 111 145555666
Q ss_pred HHHHHHHchhcCCC----eee--EeecceE-------EEEEEeecCCccchhHHHHHHHHHHHC--CcEEeecCCEEEEe
Q psy14484 340 KITKALTSLITHPK----IIN--FRQKGMI-------WAFDVIIEDPEQIETFSKKFFVAALKN--ELLLRPIGNTVYLM 404 (430)
Q Consensus 340 ~l~~~l~~l~~~~~----~~~--~~~~g~~-------~~~~~~~~~~~~~~~~a~~~~~~l~~~--Gv~~~~~~~~lR~~ 404 (430)
.+.+.|+....... ... .-|-|.+ +.+.+. ... .. +..+.+.|++- .|+.+...+.+.+-
T Consensus 368 ~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~-~~~--~~--~~~l~~~lr~~~~~i~~r~~~~~~~ld 442 (464)
T PRK04311 368 RLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLT-PKD--RS--LEALAARLRLLPPPVIGRIEDGRLLLD 442 (464)
T ss_pred HHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEe-CCC--CC--HHHHHHHHhcCCCCEEEEEECCEEEEE
Confidence 77666654311000 100 0111111 222332 211 11 46788888764 57776666777776
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+- +..++|++.++++|++++.
T Consensus 443 ~r-~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 443 LR-TLEEEDEERLAAALLEALN 463 (464)
T ss_pred eC-cCCHHHHHHHHHHHHHHhh
Confidence 43 6788999999999988764
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-12 Score=121.60 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
.+..+++.+.+..+... .-+...++++.+++.+ +..+++.++|||.|+.+|++++.- .+++.||+.
T Consensus 15 ~~e~~~v~~vl~sg~i~-----~G~~v~~FE~~~ae~~--G~k~ava~~sgT~AL~laL~al~i-------g~GDeVI~p 80 (374)
T COG0399 15 EEELAAVQEVLKSGWLT-----GGPFVRRFEQAFAEYL--GVKYAVAVSSGTAALHLALLALAI-------GPGDEVIVP 80 (374)
T ss_pred hHHHHHHHHHHHcCCee-----cChHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHhcCC-------CCCCEEEec
Confidence 45566666666553321 1355678888899998 778899999999999999995542 267889988
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
+-+|..........+..| +++.++ +++.. |.+.+|++|. +++++|+.-. .
T Consensus 81 s~TfvATan~i~~~Ga~P-------------VFvDid~~T~ni------------d~~~ie~aIt---~~tKAIipVh-l 131 (374)
T COG0399 81 SFTFVATANAVLLVGAKP-------------VFVDIDPDTLNI------------DPDLIEAAIT---PRTKAIIPVH-L 131 (374)
T ss_pred CCchHHHHHHHHHcCCeE-------------EEEecCCcccCC------------CHHHHHHHcc---cCCeEEEEeh-h
Confidence 877765533333333322 455544 33333 8999999996 5688888755 3
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC--cccccccccCCCCCceeeee----cccCCCccccEEEEE
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMT 285 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~--~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~ 285 (430)
. |..+. ++.|.++|++||+++|.|.+|+ +|- .|+ ..|-.-|+.+|| |.|+.| --|+++.
T Consensus 132 ~---G~~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~y~gk-----~vGt~Gd~~~fSF~~~K~ittg--EGGav~t 196 (374)
T COG0399 132 A---GQPCD----MDAIMALAKRHGLPVIEDAAQA-HGATYKGK-----KVGSFGDIGAFSFHATKNLTTG--EGGAVVT 196 (374)
T ss_pred c---cCCCC----HHHHHHHHHHcCCeEEEEcchh-ccCeecCc-----ccccccceEEEEecCCCCcccc--CceEEEe
Confidence 3 43333 9999999999999999999997 432 222 233345777777 888865 3467777
Q ss_pred c-HHHHHhhh---ccCCcc--cccc-----cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 286 T-DKIYNSIY---YKNNIN--IFLH-----SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 286 ~-~~~~~~~~---~~~~~~--~~~~-----~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
+ +++.+.++ ..|..+ ...+ +..+.-+.+.++.++.-|+.+ +++.++-++..++..+.|+++......
T Consensus 197 nd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~~~~p 274 (374)
T COG0399 197 NDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPGITLP 274 (374)
T ss_pred CCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 5 55655433 212221 0111 112222233333344444433 557777778888888888876322221
Q ss_pred eeEee-cceEEE--EEEeecCCccchhHHHHHHHHHHHCCcE----Eeec------------------------CCEEEE
Q psy14484 355 INFRQ-KGMIWA--FDVIIEDPEQIETFSKKFFVAALKNELL----LRPI------------------------GNTVYL 403 (430)
Q Consensus 355 ~~~~~-~g~~~~--~~~~~~~~~~~~~~a~~~~~~l~~~Gv~----~~~~------------------------~~~lR~ 403 (430)
....+ ...+.. +.+. .... . -+.+.+.|.++||. ..|. ...+.+
T Consensus 275 ~~~~~~~~~~~~~~i~~~-~~~~-~---R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~L 349 (374)
T COG0399 275 PEPDGAVHAWHLYTILVD-EEGI-S---RDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSL 349 (374)
T ss_pred CCCCCceeeeeeeEEEec-CCCC-C---HHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEc
Confidence 11111 111222 2222 2111 1 25788899999554 3330 145677
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
-+....+++++++.++.|++++.+
T Consensus 350 P~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 350 PLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcc
Confidence 667778999999999999988753
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-13 Score=129.48 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=114.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
++..+...+|+++++++.+ .+..++++||+.|+.+++. +.. ++++||+.++.|++........
T Consensus 46 r~~~p~~~~Le~~la~l~g--~~~al~~~SG~~Al~~~l~-~l~--------pGd~Vi~~~~~y~~t~~~~~~~------ 108 (380)
T PRK06176 46 RSGNPTRFALEELIADLEG--GVKGFAFASGLAGIHAVFS-LFQ--------SGDHVLLGDDVYGGTFRLFDKV------ 108 (380)
T ss_pred CCCChhHHHHHHHHHHHhC--CCCEEEECCHHHHHHHHHH-HcC--------CCCEEEEcCCChhHHHHHHHHH------
Confidence 5666778899999999984 4567788999999986664 332 6688999888887653211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......+..+++.. |+++++++++ +++++|++|. ++|++|...+ +++|.++|
T Consensus 109 ---~~~~gi~v~~vd~~-----------------d~e~l~~ai~---~~t~lV~les-P~Nptg~~~d----i~~I~~la 160 (380)
T PRK06176 109 ---LVKNGLSCTIIDTS-----------------DLSQIKKAIK---PNTKALYLET-PSNPLLKITD----LAQCASVA 160 (380)
T ss_pred ---HHhcCeEEEEcCCC-----------------CHHHHHHhcC---cCceEEEEEC-CCCCCceecC----HHHHHHHH
Confidence 01111222333322 6788888885 5788999998 8899997776 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCccc-cEEEEEc-HHHHHhhh
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLP-LSLVMTT-DKIYNSIY 294 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~-ig~~~~~-~~~~~~~~ 294 (430)
+++|+++|+|++++.. ..+.. .+...|++++ +|.++|..-. .|+++.+ +++.+.+.
T Consensus 161 ~~~gi~vivD~t~a~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~ 220 (380)
T PRK06176 161 KDHGLLTIVDNTFATP-YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIA 220 (380)
T ss_pred HHcCCEEEEECCcccc-ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHH
Confidence 9999999999998732 11111 2334677754 5999763122 4456664 45555443
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-13 Score=130.30 Aligned_cols=163 Identities=11% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++...++++.++++.+ .+..+.++||+.|+..++..+.. ++++||+.++.|.++......
T Consensus 43 r~g~p~~~~lE~~la~leg--~~~~v~~ssG~~Ai~~~l~all~--------~Gd~Vv~~~~~y~~t~~~~~~------- 105 (397)
T PRK05939 43 RQGTPTTAALEAKITKMEG--GVGTVCFATGMAAIAAVFLTLLR--------AGDHLVSSQFLFGNTNSLFGT------- 105 (397)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHcC--------CCCEEEECCCccccHHHHHHH-------
Confidence 4567888999999999984 45577788889999999887754 567888888777654221111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......+..+++.. |+++++++++ +++++|+++. ++|++|.+.+ +++|.++|
T Consensus 106 ---l~~~G~~v~~v~~~-----------------d~e~l~~~l~---~~tklV~ves-p~NptG~v~d----l~~I~~la 157 (397)
T PRK05939 106 ---LRGLGVEVTMVDAT-----------------DVQNVAAAIR---PNTRMVFVET-IANPGTQVAD----LAGIGALC 157 (397)
T ss_pred ---HHhcCCEEEEECCC-----------------CHHHHHHhCC---CCCeEEEEEC-CCCCCCCHHh----HHHHHHHH
Confidence 11112233444432 7788998885 5788999999 9999997866 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEc
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~ 286 (430)
+++|+++|+|++|+... .++......|++ +++|.++|....+|+++..
T Consensus 158 ~~~gi~livD~t~a~~~------~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 158 RERGLLYVVDNTMTSPW------LFRPKDVGASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred HHcCCEEEEECCccccc------ccCccccCCEEEEecCeecccCCCCeEEEEEec
Confidence 99999999999985211 122222345655 6789999833688887664
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=115.48 Aligned_cols=282 Identities=14% Similarity=0.130 Sum_probs=174.0
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcc-hhhhccCCCccchhhhhccCCCeeEeCCCCCCC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET-LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
.-.++.-+|+.+.+.|+-.... +.++|+++.-+-.|.. ..... .+..++..++.+-...
T Consensus 69 ~tf~isgsGh~g~E~al~N~le--------Pgd~vLv~~~G~wg~ra~D~~~------------r~ga~V~~v~~~~G~~ 128 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLE--------PGDNVLVVSTGTWGQRAADCAR------------RYGAEVDVVEADIGQA 128 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcC--------CCCeEEEEEechHHHHHHHHHH------------hhCceeeEEecCcccC
Confidence 3577778999999999988776 5566666554443432 22111 2233444453332111
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~ 253 (430)
. .++++++.+.+| ++.+|.+.. +.+++|...+- ++...++|++|+++|+||-|.+ +| |.
T Consensus 129 ~------------~le~i~~~lsqh--~p~~vfv~h-gdsSTgV~q~~---~~~~g~lc~k~~~lllVD~VaS-lg--gt 187 (385)
T KOG2862|consen 129 V------------PLEEITEKLSQH--KPKAVFVTH-GDSSTGVLQDL---LAISGELCHKHEALLLVDTVAS-LG--GT 187 (385)
T ss_pred c------------cHHHHHHHHHhc--CCceEEEEe-cCccccccchH---HHHHHHHhhcCCeEEEEechhh-cC--Cc
Confidence 1 789999999975 667788877 88889977763 6677899999999999999977 54 34
Q ss_pred ccccccCCCCCcee-eee-cccCCCccccEEEEEcHHHHHhhhccCCcc--cccc-----c-----------CCCCCCHH
Q psy14484 254 FFACEHAEIWPDFL-CLS-KGITGGYLPLSLVMTTDKIYNSIYYKNNIN--IFLH-----S-----------HSYSGNPL 313 (430)
Q Consensus 254 ~~~~~~~~~~~d~~-~~s-K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~--~~~~-----~-----------~t~~~~~~ 313 (430)
.|.++.+++ |+. |-| |++++- ..++.+..++...+.++.. ..+ .++. + ..++++..
T Consensus 188 ~F~mDewgV--DvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~r-K~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~ 263 (385)
T KOG2862|consen 188 EFEMDEWGV--DVAYTGSQKALGAP-AGLSIISFSDKALEAIRDR-KTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQ 263 (385)
T ss_pred cceehhhcc--cEEEecchhhcCCC-CCcceeecCHHHHHHHhhc-cCCceEEEEeHHhhcchhccCCcccccccCCcHH
Confidence 577777776 444 333 899864 3467788888877777652 111 1110 0 01122334
Q ss_pred HHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHchhcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH
Q psy14484 314 ACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 389 (430)
Q Consensus 314 ~~~aa~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 389 (430)
.....+++|+.+-++.+ .++=++.+++++..|+++.--.. ..+-...-....+..+ ...+ -.++..+++.
T Consensus 264 lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptvttv~vp-~gvD-----w~dVv~~~~~ 337 (385)
T KOG2862|consen 264 LLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTVTTVKVP-YGVD-----WKDVVAYAMS 337 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcceeeecC-CCCC-----HHHHHHHHHH
Confidence 45566677776555444 45557788899998887611111 1111222223333333 2111 1457777777
Q ss_pred CCcEEeec------CCEEEEeCCCCC-CHHHHHHHHHHHHHHHHH
Q psy14484 390 NELLLRPI------GNTVYLMPPYIL-NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 390 ~Gv~~~~~------~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~ 427 (430)
++.+...+ +..+||.+--++ +.|.|+..++.|+.++.+
T Consensus 338 ~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 338 HYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred hcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence 74443332 478898765554 778899999999988864
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.1e-13 Score=127.80 Aligned_cols=251 Identities=16% Similarity=0.132 Sum_probs=147.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.++.++...+|++.++++.+ .+..+++++|+.|+..++. +.. ++++||+.++.|.+.........
T Consensus 45 ~r~~~p~~~~Le~~lA~l~g--~~~~~~~~sG~aai~~~~~-~l~--------~Gd~Viv~~~~y~~~~~~~~~~~---- 109 (377)
T PRK07671 45 SRTGNPTRAALEELIAVLEG--GHAGFAFGSGMAAITAVMM-LFS--------SGDHVILTDDVYGGTYRVMTKVL---- 109 (377)
T ss_pred CCCCChHHHHHHHHHHHHhC--CCceEEeCCHHHHHHHHHH-HhC--------CCCEEEECCCccchHHHHHHHHH----
Confidence 35677888999999999985 3556778888888876653 332 56789999998875432211100
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.....+..+++.. |+++++++++ +++++|++|. ++|++|...+ +++|.++
T Consensus 110 -----~~~G~~v~~v~~~-----------------d~~~l~~ai~---~~tklV~le~-P~NPtg~~~d----l~~I~~l 159 (377)
T PRK07671 110 -----NRFGIEHTFVDTS-----------------NLEEVEEAIR---PNTKAIYVET-PTNPLLKITD----IKKISTI 159 (377)
T ss_pred -----hcCCeEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 0111222333321 7788998885 4678888888 8888887766 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCc-cccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~-~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||++... ..+.. .....|++ +++|.++|.. .-.|++++ ++++.+.+.. ......
T Consensus 160 a~~~g~~lvvD~a~~~~-~~~~p-----~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~------~~~~~g 227 (377)
T PRK07671 160 AKEKGLLTIVDNTFMTP-YWQSP-----ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHF------VQNSTG 227 (377)
T ss_pred HHHcCCEEEEECCCCcc-ccCCh-----hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHH------HHHhhc
Confidence 99999999999998632 11111 12345666 4679998631 12344555 4566665543 111111
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
-..++..+..+...++.+.. ..++..++...+.+.|++.. .+|... ...+-|.++.|++. +
T Consensus 228 ~~~~~~~a~l~~~~l~tl~~--R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~-~- 303 (377)
T PRK07671 228 GILGPQDSWLLLRGLKTLGI--RMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG-S- 303 (377)
T ss_pred CCCCHHHHHHHHcCcChHHH--HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC-C-
Confidence 12244433333333333221 34455566666666665421 112211 12456888888885 3
Q ss_pred CccchhHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAA 387 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 304 ----~~~~~~f~~~l 314 (377)
T PRK07671 304 ----EETANKVLERL 314 (377)
T ss_pred ----HHHHHHHHHhC
Confidence 11134566654
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=118.99 Aligned_cols=311 Identities=16% Similarity=0.165 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
+...+|+++|++.. +.+.|.+-+ +|++.-.+.+.+++.|+..+|...|+ ++..+.+.||....+.++.+.
T Consensus 109 ~li~~Lq~~L~~IT--G~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~-~~LIP~SAHGTNPASAam~G~------ 179 (496)
T COG1003 109 ELIYELQEWLKEIT--GMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRN-ICLIPDSAHGTNPASAAMAGF------ 179 (496)
T ss_pred HHHHHHHHHHHHhc--CCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCc-EEEeeccccCCChhhHhhcCc------
Confidence 55678899999998 778887775 99999999999999999999986555 455567999988777776662
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
+++.++..++... |+++|++++. ++++++++.- + |+-|.. .+-+.+|+++.+++
T Consensus 180 ------~VV~V~~~~~G~V------------DlddLk~k~~---~~~AalMiTn-P-sT~GvF---E~~I~ei~~ivH~~ 233 (496)
T COG1003 180 ------KVVVVKCDENGNV------------DLDDLRAKAE---DNLAALMITN-P-STLGVF---EEDIREICEIVHEA 233 (496)
T ss_pred ------eEEEEecCCCCCc------------cHHHHHHHhc---cceeEEEecc-C-cccccc---hhhHHHHHHHHHHc
Confidence 3345555444443 9999999996 5677766643 2 333422 34589999999999
Q ss_pred CCEEEEecc----ccCCCCcccc-cccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-------------C
Q psy14484 236 NIHLIADEI----AVGCGRTGKF-FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-------------N 297 (430)
Q Consensus 236 gi~li~DEv----~~g~g~~g~~-~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-------------~ 297 (430)
|..|..|-+ +-|..|.|.+ +...++++. -||+-.-|||+-..|.+.+++.+...+-.+ +
T Consensus 234 Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNLH---KTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~ 310 (496)
T COG1003 234 GGQVYYDGANLNAIVGLARPGDMGFDVVHLNLH---KTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYD 310 (496)
T ss_pred CCEEEecCcchhhhhccccccccccceEEeecc---cccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCC
Confidence 999999954 3355555542 222222221 145544556555688888888776544320 0
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHH---HHHHHHHHHHHHHchhcCCCeeeEe-ecceEEEEEEeecCC
Q psy14484 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDP 373 (430)
Q Consensus 298 ~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~---~~~~~~~l~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~ 373 (430)
...+......+.++......+++.+.++..+.+.+. .--++.|+..+|+.. ++.+..-. ....=+.++.. .-.
T Consensus 311 ~~~s~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r-~l~ 387 (496)
T COG1003 311 GKKSIGVSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDAR-PLK 387 (496)
T ss_pred CCccceeeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeech-HhH
Confidence 111233355667787778888888888876655543 344788888888752 22211101 01111112211 111
Q ss_pred ccchhHHHHHHHHHHHCCcEEe----e--cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 374 EQIETFSKKFFVAALKNELLLR----P--IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~Gv~~~----~--~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
....-.+..++++|+..|+... | -.+.+.+-|.-.-+++++|++++++.++..+.
T Consensus 388 ~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea 448 (496)
T COG1003 388 KETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIREEA 448 (496)
T ss_pred hhcCCcHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1111125789999999998643 2 24789999999999999999999999887654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.7e-12 Score=121.08 Aligned_cols=314 Identities=13% Similarity=0.080 Sum_probs=173.1
Q ss_pred CCHHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc
Q psy14484 51 SNSYINKALKNQLNKLEHVM---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~ 127 (430)
-++++.+++.+.+..+.... ..+........+++.++++++ .+..+++++|+.|+..++..+ . +++
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~g--ae~alvv~sg~aAi~l~l~~l-~--------~Gd 161 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTG--AEDALVVNNNAAAVLLALNTL-A--------KGK 161 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHh-C--------CcC
Confidence 46899999999887643110 011223456788899999985 455777899999998888543 2 566
Q ss_pred EEEEEcCCC---CCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q psy14484 128 KFICLQNSY---HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204 (430)
Q Consensus 128 ~vl~~~~~y---hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 204 (430)
.||+.+..+ .|....... ..........+... .. .++++++++++ +++++
T Consensus 162 eVIvs~~e~v~~ggs~~i~~~----------~~~~G~~~~~v~~~--~~------------~~l~dle~aI~---~~T~l 214 (454)
T TIGR00474 162 EVIVSRGELVEIGGSFRIPDV----------MEQSGAKLVEVGTT--NR------------THLKDYEDAIT---ENTAL 214 (454)
T ss_pred EEEECCChhhhhcchhhHHHH----------HHHcCCEEEEeCCC--CC------------CCHHHHHHhcC---cCCEE
Confidence 777765543 222111000 01111222333221 11 16788888885 56788
Q ss_pred EEEccccccC--CC--cccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc------ccccccccCCCCCceeeee--cc
Q psy14484 205 IIIEPLVQCA--GG--MIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT------GKFFACEHAEIWPDFLCLS--KG 272 (430)
Q Consensus 205 vi~ep~v~~~--~G--~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~------g~~~~~~~~~~~~d~~~~s--K~ 272 (430)
++++. ..|. .| ...+ +++|.++|++||+++++|....-++.. ..+...+......|+++|| |.
T Consensus 215 v~~~h-~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~ 289 (454)
T TIGR00474 215 LLKVH-TSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKL 289 (454)
T ss_pred EEEEc-cCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccc
Confidence 77777 5543 24 3555 999999999999999999642111111 1111122233457999999 99
Q ss_pred cCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCH------------HHHHHHHH
Q psy14484 273 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNI------------LQRISQDM 338 (430)
Q Consensus 273 l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~------------~~~~~~~~ 338 (430)
++|. ..|++++++++++.+...+ ..-.+...-..+++..+++...-. +.+ .++..+++
T Consensus 290 LgGp--~~G~i~g~~~~i~~l~~~~------l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A 361 (454)
T TIGR00474 290 LGGP--QAGIIVGKKELIERLKKNP------LTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARA 361 (454)
T ss_pred cCCC--eEEEEEECHHHHHhhhhch------hHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHH
Confidence 9774 3788999998887665410 000011111222223333332211 111 13455566
Q ss_pred HHHHHHHHch-h-cCCC-eeeE---eecceE-------EEEEEeecCCccchhHHHHHHHHHHHCC--cEEeecCCEEEE
Q psy14484 339 KKITKALTSL-I-THPK-IINF---RQKGMI-------WAFDVIIEDPEQIETFSKKFFVAALKNE--LLLRPIGNTVYL 403 (430)
Q Consensus 339 ~~l~~~l~~l-~-~~~~-~~~~---~~~g~~-------~~~~~~~~~~~~~~~~a~~~~~~l~~~G--v~~~~~~~~lR~ 403 (430)
..+.+.|+.. . .... +... -|-|.+ +.+.+. ... .. +..+.+.|++.. |+.+...+.+.+
T Consensus 362 ~~la~~L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~-~~~--~~--~~~l~~~lr~~~~~ii~r~~~~~~~l 436 (454)
T TIGR00474 362 ERLAKRLKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLT-PDG--LS--AEKLEARLRELPPPIIGRIEDDRFLL 436 (454)
T ss_pred HHHHHHHHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEe-cCC--CC--HHHHHHHHhcCCCCEEEEEECCEEEE
Confidence 6676666553 1 1100 0000 111221 222332 211 11 467888887664 666655677777
Q ss_pred eCCCCCCHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l 421 (430)
-+- +..++|++.++++|
T Consensus 437 d~r-~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 437 DLR-TLLEDEEELLIEAL 453 (454)
T ss_pred EeC-cCCHHHHHHHHHHh
Confidence 644 66888888888776
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=124.84 Aligned_cols=289 Identities=14% Similarity=0.183 Sum_probs=168.7
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc
Q psy14484 71 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 150 (430)
Q Consensus 71 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~ 150 (430)
..+..++....+++.|+++. +.+.++.++||..|+..++..+.. +.++||+....|++.......
T Consensus 49 Y~R~gnPt~~~le~~la~Le--~g~~a~~~~SGmaAi~~~l~~ll~--------~Gd~iv~~~~~Y~~t~~~~~~----- 113 (386)
T PF01053_consen 49 YSRYGNPTVRALEQRLAALE--GGEDALLFSSGMAAISAALLALLK--------PGDHIVASDDLYGGTYRLLEE----- 113 (386)
T ss_dssp BTTTC-HHHHHHHHHHHHHH--T-SEEEEESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHH-----
T ss_pred eeccccccHHHHHHHHHHhh--cccceeeccchHHHHHHHHHhhcc--------cCCceEecCCccCcchhhhhh-----
Confidence 34667788999999999998 447899999999999999887765 568899999999875322211
Q ss_pred cchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHH
Q psy14484 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~ 230 (430)
.+.....++.++... |+++++++++ +++++|++|+ +.|+...+.. +++|.+
T Consensus 114 ----~l~~~gv~v~~~d~~-----------------d~~~l~~~l~---~~t~~v~~Es-psNP~l~v~D----l~~i~~ 164 (386)
T PF01053_consen 114 ----LLPRFGVEVTFVDPT-----------------DLEALEAALR---PNTKLVFLES-PSNPTLEVPD----LEAIAK 164 (386)
T ss_dssp ----CHHHTTSEEEEESTT-----------------SHHHHHHHHC---TTEEEEEEES-SBTTTTB-------HHHHHH
T ss_pred ----hhcccCcEEEEeCch-----------------hHHHHHhhcc---ccceEEEEEc-CCCccccccc----HHHHHH
Confidence 112223344444332 7899999996 5899999999 9998876665 999999
Q ss_pred HHHhcC-CEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC-ccccEEEEEcH--HHHHhhhccCCcccccc
Q psy14484 231 ICNNYN-IHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG-YLPLSLVMTTD--KIYNSIYYKNNINIFLH 304 (430)
Q Consensus 231 l~~~~g-i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG-~~~ig~~~~~~--~~~~~~~~~~~~~~~~~ 304 (430)
+|+++| +++++|.+.... ..+..+....|++ +++|.++|. -.-.|+++++. ++.+.+.. . ....
T Consensus 165 ~a~~~g~~~~vVDnT~atp------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~---~-~~~~ 234 (386)
T PF01053_consen 165 LAKEHGDILVVVDNTFATP------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLRE---F-RRLL 234 (386)
T ss_dssp HHHHTTT-EEEEECTTTHT------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHH---H-HHHH
T ss_pred HHHHhCCceEEeeccccce------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcc---h-hhhc
Confidence 999998 999999986421 1223333446776 466999873 22355666554 66665543 0 0112
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEe
Q psy14484 305 SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVI 369 (430)
Q Consensus 305 ~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~ 369 (430)
+.+. +|..+......|+.+ +-..++..+++..+.+.|++-+. +|.+. ...+-|.++.|++.
T Consensus 235 G~~~--~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~ 310 (386)
T PF01053_consen 235 GATL--SPFDAWLLLRGLRTL--PLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELK 310 (386)
T ss_dssp T-B----HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEES
T ss_pred Cccc--hHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEec
Confidence 2222 333222222222211 11234555566666666654311 11110 13366779999998
Q ss_pred ecCCccchhHHHHHHHHHHH--CC--------cEEeec------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 370 IEDPEQIETFSKKFFVAALK--NE--------LLLRPI------------------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 370 ~~~~~~~~~~a~~~~~~l~~--~G--------v~~~~~------------------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+.. +.+..|.+.|.- .| ++..|. ++.+|+++.+ |+.+.+++.|
T Consensus 311 -~~~----~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvGl----Ed~~dLi~Dl 381 (386)
T PF01053_consen 311 -GGE----EAARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVGL----EDPDDLIADL 381 (386)
T ss_dssp -SHH----HHHHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE--S----S-HHHHHHHH
T ss_pred -cch----hhhHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEecc----CCHHHHHHHH
Confidence 521 224667777632 11 111120 2578997664 4566677777
Q ss_pred HHHHH
Q psy14484 422 FQTFN 426 (430)
Q Consensus 422 ~~~l~ 426 (430)
+++|+
T Consensus 382 ~~AL~ 386 (386)
T PF01053_consen 382 EQALE 386 (386)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-12 Score=110.03 Aligned_cols=304 Identities=13% Similarity=0.143 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
++..++.+.|++++ +.|.+.+|+|+-+|-.+++..++ ++...++.+...|=.+..+....+.
T Consensus 61 PpI~~F~~dlaeFl--g~D~~R~t~GARe~KfavMhal~---------~~gd~vV~D~~aHYttyvAAEragl------- 122 (382)
T COG1103 61 PPIKDFLEDLAEFL--GMDEVRVTAGAREAKFAVMHALC---------KEGDWVVVDSLAHYTTYVAAERAGL------- 122 (382)
T ss_pred CcHHHHHHHHHHHh--CCceeeecccchhhHHHHHHHhc---------cCCCEEEEcCcchHHHHHHHHhcCC-------
Confidence 55667777788888 78899999999999999998887 3455677787777555444433331
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
....+|+.....+....+. ..+.+++..++-++.+++.++.. +.++.|.... .+.+.++|+++|
T Consensus 123 -------~v~eVp~tg~Pey~i~~e~----y~~viee~~~~~g~~~~lallTh-~Dg~YGNl~D----akkva~ic~e~g 186 (382)
T COG1103 123 -------NVAEVPNTGYPEYKITPEG----YAEVIEEVKDEGGDPPALALLTH-VDGEYGNLAD----AKKVAKICREYG 186 (382)
T ss_pred -------eEEecCCCCCCceEecHHH----HHHHHHHHHhccCCCceEEEEec-cCCCcCCchh----hHHHHHHHHHcC
Confidence 2222333332222222222 33455555555445688888888 9999996655 899999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhc-cCCcccc----cccCCCC
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYY-KNNINIF----LHSHSYS 309 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~-~~~~~~~----~~~~t~~ 309 (430)
+++++.-+|+ .||. ..+...+.+|+++-| |+|+.. .|+|.+..++++.+.... +++..+. ..+-|.-
T Consensus 187 vPlllN~AYt-~Grm----pvs~ke~g~DFiVgSGHKsmAAs-~PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~r 260 (382)
T COG1103 187 VPLLLNCAYT-VGRM----PVSGKEIGADFIVGSGHKSMAAS-APIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVR 260 (382)
T ss_pred CceEeeccee-eccc----cccccccCCCEEEecCccchhcc-CCeeEEeehhHHHHHHHhhcccccccceeeeeccccc
Confidence 9999999998 6664 244456789999877 788876 499999999999876543 1111111 1122333
Q ss_pred CCHHHHHHHHHHHHHH-hh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecC-----CccchhHHHH
Q psy14484 310 GNPLACCAALATLEIF-NK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED-----PEQIETFSKK 382 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~-~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~a~~ 382 (430)
+.|+... .+.+-.+ ++ ..|.+.++ ..++|.+.|+.+.....+..-+-..-+..|+-+ .- +.... .-.
T Consensus 261 GapivTl--mASfP~V~eRVkrWdeEv~-kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp-~f~eIakk~~r~--gyF 334 (382)
T COG1103 261 GAPIVTL--MASFPHVVERVKRWDEEVE-KARWFVAELEKIGGVKQLGERPKNHDLMKFETP-VFHEIAKKHKRK--GYF 334 (382)
T ss_pred CchHHHH--HhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHhCCCCcccceeeecCc-hHHHHHHhCcCC--cee
Confidence 3333221 1222111 11 23444443 455676777665322222222222223334332 10 00011 124
Q ss_pred HHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 383 FFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 383 ~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++.|+++||.-...| .++.++ -+..+.|+++..++++++++.+
T Consensus 335 lY~ELK~RgI~GI~~G~Tk~~K~s-vyGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 335 LYEELKKRGIHGIQPGQTKYFKLS-VYGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred eHHHHHhcCccccccCceeEEEEE-eecCCHHHHHHHHHHHHHHHHh
Confidence 6788999988755444 455665 4578999999999999998764
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=121.54 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=124.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+....++++++.+-+ +. ..+.+.||..|...|+..+.+ .++.||.-..-|-|..-. +
T Consensus 58 Ri~NPT~~vlE~RiAaLEG-G~-aa~a~aSG~AA~~~ai~~la~--------aGD~iVss~~LYGGT~~l---------f 118 (426)
T COG2873 58 RIMNPTTDVLEERIAALEG-GV-AALAVASGQAAITYAILNLAG--------AGDNIVSSSKLYGGTYNL---------F 118 (426)
T ss_pred eccCchHHHHHHHHHHhhc-ch-hhhhhccchHHHHHHHHHhcc--------CCCeeEeeccccCchHHH---------H
Confidence 4556777888889988864 33 456678999999999988876 678899888888665321 2
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
...+..+.-++.++..+ |++.++++|+ +++++|++|. +.|+.+.+.. ++.|.++|
T Consensus 119 ~~tl~~~Gi~v~fvd~~-----------------d~~~~~~aI~---~nTkavf~Et-igNP~~~v~D----ie~ia~iA 173 (426)
T COG2873 119 SHTLKRLGIEVRFVDPD-----------------DPENFEAAID---ENTKAVFAET-IGNPGLDVLD----IEAIAEIA 173 (426)
T ss_pred HHHHHhcCcEEEEeCCC-----------------CHHHHHHHhC---cccceEEEEe-ccCCCccccC----HHHHHHHH
Confidence 23334445566676544 7899999996 6899999999 9999887766 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcHH
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~ 288 (430)
++||+++|+|...+. ++.+...+...|++ +++|.++|.+..||.+++...
T Consensus 174 h~~gvpliVDNT~at------pyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G 225 (426)
T COG2873 174 HRHGVPLIVDNTFAT------PYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGG 225 (426)
T ss_pred HHcCCcEEEecCCCc------ceecchhhcCCCEEEEeecccccCCccccceEEEeCC
Confidence 999999999987652 13344445567877 577999994478998877554
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=123.62 Aligned_cols=345 Identities=12% Similarity=0.115 Sum_probs=183.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
.....|||+.+-.++ +.+.++....+..+... +..++...+|++.+++.+ +.++++++++|+.|+.++
T Consensus 42 ~~~~v~IDLlSDS~T-------~aMs~~q~a~~~vGDd~---Yagd~s~~~LE~~vAe~l--G~e~aV~v~sGTaAl~ll 109 (460)
T PRK13237 42 RSEDVYIDLLTDSGT-------NAMSDRQWAGMMIGDEA---YAGSRNFYHLEETVQEYY--GFKHVVPTHQGRGAENLL 109 (460)
T ss_pred CcCcEEEECcccCCc-------hhccHHHHHHHhhcchh---hcCCCcHHHHHHHHHHHH--CCCeEEEeCCHHHHHHHH
Confidence 355689999998665 22333322233333221 344566778999999998 667899999999999986
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhh-hccCCCccchhhhhccC-CCee--EeCCCCCCCCCCCCChhHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA-LAVTNIQSFKEIYTSLL-NKTY--IITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~-~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
..+... +++. | ++.+|-.+..+ ....+.. +.... .+.. ....|.... -
T Consensus 110 ~~l~v~--------pGd~-V--p~n~~f~Tt~ahI~~~Ga~-----fvDi~~d~a~~~~~~~p~tgn------------l 161 (460)
T PRK13237 110 SRIAIK--------PGQY-V--PGNMYFTTTRYHQELNGGI-----FVDIIIDEAHDAQSDHPFKGN------------V 161 (460)
T ss_pred HHhCCC--------CcCE-E--CCccchHhhHHHHHhCCcE-----EEeeecccccccccCCCCCCC------------c
Confidence 443322 3343 2 44434332221 2222210 00000 0000 001122222 2
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC-----------Ccccc
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG-----------RTGKF 254 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g-----------~~g~~ 254 (430)
|++.|+++|++. ..+++++.++- ..|..|..+.+.+.+++|.++|++||+.||.|.++. ++ +.+..
T Consensus 162 D~d~Le~~I~~~~~~~~~lV~a~i-tvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~ 239 (460)
T PRK13237 162 DLDKLQALIDEVGAENIAYICLAV-TVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKS 239 (460)
T ss_pred CHHHHHHHhccccCCccCceEEEE-ecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCc
Confidence 899999999864 23444444433 334443366677789999999999999999999886 32 11111
Q ss_pred cc--cccCCCCCceeeee--cccCCCcccc-EEEEEc-HHHHHhhhccCCccccc-ccCCCCCCHH-HHHHHHHHHHHHh
Q psy14484 255 FA--CEHAEIWPDFLCLS--KGITGGYLPL-SLVMTT-DKIYNSIYYKNNINIFL-HSHSYSGNPL-ACCAALATLEIFN 326 (430)
Q Consensus 255 ~~--~~~~~~~~d~~~~s--K~l~gG~~~i-g~~~~~-~~~~~~~~~~~~~~~~~-~~~t~~~~~~-~~~aa~~~l~~~~ 326 (430)
.. .....-..|+++|| |.++. ++ |+++.+ +++.+.++. ..... ...|+++-.- -+.+....|+...
T Consensus 240 i~ei~~e~~s~aD~~t~S~~K~~~~---~~GG~i~t~D~eL~~~~r~---~~~~~eG~~tygg~~grd~~alAvgl~E~~ 313 (460)
T PRK13237 240 IKEIVHEMFSYADGCTMSGKKDCLV---NIGGFLAMNDEELFDEAKE---LVVVYEGMPSYGGMAGRDMEAMAIGIEESV 313 (460)
T ss_pred HhHHhhhccCcCcEEEEeCCCCCCC---CCceEEEECCHHHHHHHHH---hccccCCCcCCCChhhhHHHHHHhHHHhhc
Confidence 00 00111236888776 65543 44 455554 567766654 11111 1224444222 1222222344333
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEee--cCCccchhH-HHHHHHHHH-HCCcEEee------
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPEQIETF-SKKFFVAAL-KNELLLRP------ 396 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~-a~~~~~~l~-~~Gv~~~~------ 396 (430)
++++..+.-...++|.+.|++. +.|.+.. ..|.-+.++... +... ..+| +..++-.|. +-||-...
T Consensus 314 ~~~y~~~ri~~~~~l~~~L~~~-Gvpv~~p--~ggH~v~vda~~~lph~~-~~~~p~~al~~~ly~~~GiR~~e~g~~~~ 389 (460)
T PRK13237 314 QYEYIEHRVGQVRYLGEKLLAA-GVPIVEP--VGGHAVFLDARRFLPHLP-QDQFPAQALAAELYIESGVRSMERGIVSA 389 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHC-CCceecC--CCceEEEEEhHHhCCCCC-cccChHHHHHHHHHHHhCcCeEeecceec
Confidence 4466666666778888888765 4555433 233333333220 0000 1111 345555553 33553321
Q ss_pred ----c--------CCEEEEeCCCCC-CHHHHHHHHHHHHHHHHH
Q psy14484 397 ----I--------GNTVYLMPPYIL-NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ----~--------~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~ 427 (430)
. -..+|+.++.-. |.+++|...++|..+.+.
T Consensus 390 ~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 390 GRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred ccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 0 146788887765 999999999999888753
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=124.42 Aligned_cols=363 Identities=12% Similarity=0.106 Sum_probs=193.4
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHH-HHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKA-LKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
.....+-..+.|. +.......|||+.+-.++ +.+.++ +... ..+.. .+..++...+|++.+++.
T Consensus 19 ~r~~~l~~ag~n~----f~l~~~~v~iDLltDsgT-------~aMs~~q~a~~-~~GDe---~yag~~s~~~lE~~va~~ 83 (450)
T TIGR02618 19 EREKKMQEAGYNT----FLLNSEDVYIDLLTDSGT-------NAMSDKQWAGL-MMGDE---AYAGSRNFYHLERTVREL 83 (450)
T ss_pred HHHHHHHHcCCCc----ccCccCceEEEcccCCCc-------HHHHHHHHHHh-hhcch---hhcCCCcHHHHHHHHHHH
Confidence 3333444445554 233355689999988554 444444 3322 22222 134556677999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC--e-eEe
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK--T-YII 166 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 166 (430)
+ +.+++++++||+.|...+..+... +++.| +++.|...+.......+.. +.....+ . ...
T Consensus 84 ~--G~~~av~v~sGT~Al~ll~~l~l~--------pGDeV--psn~~f~Tt~ahIe~~Gav-----~vDi~~dea~~~~~ 146 (450)
T TIGR02618 84 Y--GFKYVVPTHQGRGAENLLSQIAIK--------PGDYV--PGNMYFTTTRYHQEKNGAT-----FVDIIIDEAHDAQL 146 (450)
T ss_pred H--CCCeEEEcCCHHHHHHHHHHhCCC--------CcCEE--CCceeHHHHHHHHHhCCeE-----EEeeeccccccccc
Confidence 9 677999999999998865433221 34443 3333323222212222210 0000000 0 001
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
..|.+.. -|++.|+++|+.. ..+++++.++- ..|..|..+.+.+.+++|.++|++||+.+|.|.++
T Consensus 147 ~~p~~Gn------------iD~~~Le~aI~~~~~~~~~lV~~e~-t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 147 NIPFKGN------------VDLKKLQKLIDEVGADKIPYICLAV-TVNLAGGQPVSMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred CCCCCCC------------cCHHHHHHHhccccCcccCceEEEE-ecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 1122122 2899999999853 22444555544 44444337777788999999999999999999987
Q ss_pred cCCCC-------ccccccccc------CCCCCceeeeecccCCCccccEEEEE--cHHHHHhhhccCCccccccc-CCCC
Q psy14484 246 VGCGR-------TGKFFACEH------AEIWPDFLCLSKGITGGYLPLSLVMT--TDKIYNSIYYKNNINIFLHS-HSYS 309 (430)
Q Consensus 246 ~g~g~-------~g~~~~~~~------~~~~~d~~~~sK~l~gG~~~ig~~~~--~~~~~~~~~~~~~~~~~~~~-~t~~ 309 (430)
. ++. .+....... .--..|.+++|-.-.++ .|+|.+++ .+++.+.++. .+....+ .|++
T Consensus 214 ~-~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~-~~~GG~l~~~d~~l~~k~r~---~~~~~eG~~tyG 288 (450)
T TIGR02618 214 C-VENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCL-VNIGGFLCMNDDEMFQSAKE---LVVVFEGMPSYG 288 (450)
T ss_pred h-hhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCC-CCCceEEEeCCHHHHHHHHH---HhhhcCCccccC
Confidence 6 311 000000000 01125665554221223 57776666 5677776654 1111111 1333
Q ss_pred CCHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecC--CccchhH-HHHHHH
Q psy14484 310 GNPL-ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED--PEQIETF-SKKFFV 385 (430)
Q Consensus 310 ~~~~-~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~-a~~~~~ 385 (430)
+-.. .+.+...+|+..-+..+.++.....++|.+.|++. +.|.+. +..|..+.++.. .- ..+..+| +..++-
T Consensus 289 gla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~-Gvpv~~--p~ggh~V~vda~-~~lph~~~~~~p~~al~~ 364 (450)
T TIGR02618 289 GLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDAR-RFLPHIPQDQFPAQSLAA 364 (450)
T ss_pred chhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHC-CCcccC--CCCcceEEEEhH-HhCCCCChhhChHHHHHH
Confidence 3121 22222234443333455555666788999999877 555533 345566666543 20 0011111 345555
Q ss_pred HHH-HCCcEEee----------c------C--CEEEEeCCCCC-CHHHHHHHHHHHHHHHHH
Q psy14484 386 AAL-KNELLLRP----------I------G--NTVYLMPPYIL-NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 386 ~l~-~~Gv~~~~----------~------~--~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~ 427 (430)
.|. +-||-... . . ..+|+.++.-. |.+++|...++|..+.++
T Consensus 365 ~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 365 SIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred HHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 553 33553221 0 1 46788887765 999999999999888753
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=116.24 Aligned_cols=166 Identities=24% Similarity=0.241 Sum_probs=114.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhcc
Q psy14484 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 159 (430)
Q Consensus 80 ~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 159 (430)
+++++.++++++.+.+++++++||++|+..+++.++. .++.|++.++.|++.........
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~------------ 62 (170)
T cd01494 3 EELEEKLARLLQPGNDKAVFVPSGTGANEAALLALLG--------PGDEVIVDANGHGSRYWVAAELA------------ 62 (170)
T ss_pred HHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhCC--------CCCEEEEeecccceehhhHHHhc------------
Confidence 5777888888865677999999999999999998864 46789999999988752111111
Q ss_pred CCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEE
Q psy14484 160 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~l 239 (430)
..+...++.+...... .+.+.+++... ..+++++++++ .++++|...+ +++|.++|+++|+++
T Consensus 63 g~~~~~v~~~~~~~~~----------~~~~~~~~~~~--~~~~~~v~~~~-~~~~~g~~~~----~~~l~~~~~~~~~~l 125 (170)
T cd01494 63 GAKPVPVPVDDAGYGG----------LDVAILEELKA--KPNVALIVITP-NTTSGGVLVP----LKEIRKIAKEYGILL 125 (170)
T ss_pred CCEEEEeccCCCCccc----------hhhhhhhhccc--cCceEEEEEec-CcCCCCeEcC----HHHHHHHHHHcCCEE
Confidence 1222333333211110 12224433322 46889999999 8999987777 699999999999999
Q ss_pred EEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 240 IADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 240 i~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
|+|+++.++...... .......+|+++.| |.+++ .++|+++++
T Consensus 126 i~D~a~~~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 126 LVDAASAGGASPAPG--VLIPEGGADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred EEecccccccccccc--cccccccCCEEEEEcccccCC--CceEEEEeC
Confidence 999999866543322 12223458988877 99987 578888764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-14 Score=129.65 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=131.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEE-EcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCF-YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~-~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+.....++++.++++++ .++++ +++|+++++..++..+.. ++++|++..++|... ...+...+
T Consensus 55 ~~~~g~i~~~~~~~A~~~g--a~~~~~~~~Gst~a~~~~l~al~~--------~gd~Vlv~~~~h~s~-~~~~~~~g--- 120 (294)
T cd00615 55 LDPTGPIKEAQELAARAFG--AKHTFFLVNGTSSSNKAVILAVCG--------PGDKILIDRNCHKSV-INGLVLSG--- 120 (294)
T ss_pred CCCChHHHHHHHHHHHHhC--CCCEEEEcCcHHHHHHHHHHHcCC--------CCCEEEEeCCchHHH-HHHHHHCC---
Confidence 3455677888899999995 34455 489999999999887754 667888777655433 22222222
Q ss_pred chhhhhccCCCeeEeCCCCCC--CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSR--NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~ 229 (430)
....+++.+... .... ..|++++++++++++ +++++++.. . +.+|...+ +++|.
T Consensus 121 ---------~~~~~v~~~~~~~~~~~~--------~i~~~~l~~~l~~~~-~~k~v~l~~-p-~~~G~~~d----l~~I~ 176 (294)
T cd00615 121 ---------AVPVYLKPERNPYYGIAG--------GIPPETFKKALIEHP-DAKAAVITN-P-TYYGICYN----LRKIV 176 (294)
T ss_pred ---------CEEEEecCccCcccCcCC--------CCCHHHHHHHHHhCC-CceEEEEEC-C-CCCCEecC----HHHHH
Confidence 111223221110 0000 027899999997643 455544443 3 45787776 99999
Q ss_pred HHHHhcCCEEEEeccccCC-CCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHH--HhhhccCCccccc
Q psy14484 230 EICNNYNIHLIADEIAVGC-GRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIY--NSIYYKNNINIFL 303 (430)
Q Consensus 230 ~l~~~~gi~li~DEv~~g~-g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~--~~~~~~~~~~~~~ 303 (430)
++|+++|+++|+||+|... ...+. +.........|++ +++|.++| ++. |++..+.+.. +.+.. ...
T Consensus 177 ~~~~~~g~~livDeA~~~~~~~~~~-~~~~~~~~~~div~~S~hK~l~g--~~~~~~l~~~~~~~~~~~~~~-----~~~ 248 (294)
T cd00615 177 EEAHHRGLPVLVDEAHGAHFRFHPI-LPSSAAMAGADIVVQSTHKTLPA--LTQGSMIHVKGDLVNPDRVNE-----ALN 248 (294)
T ss_pred HHHHhcCCeEEEECcchhhhccCcc-cCcchhhcCCcEEEEchhcccch--HhHHHHHHhCCCcCCHHHHHH-----HHH
Confidence 9999999999999998732 12221 1111222345766 46698854 343 3344443311 11211 011
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHH
Q psy14484 304 HSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 304 ~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~~l~ 346 (430)
...|.+++.+.+++..++++++. ..++.+++.++.+++++.|+
T Consensus 249 ~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 249 LHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 12333455555555556666543 24567777888888888765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-12 Score=126.15 Aligned_cols=164 Identities=19% Similarity=0.155 Sum_probs=111.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+....+++.++++.+ .+..++++||++|+.+++..+.. ++++||+.+..|.+.......
T Consensus 65 r~~~pt~~~le~~la~l~g--~~~~v~fsSG~~Ai~~al~~ll~--------~Gd~VI~~~~~y~~t~~~~~~------- 127 (437)
T PRK05613 65 RLTNPTVEALENRIASLEG--GVHAVAFASGQAAETAAILNLAG--------AGDHIVTSPRLYGGTETLFLV------- 127 (437)
T ss_pred CccChHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHhcC--------CCCEEEECCCccHHHHHHHHH-------
Confidence 4556788899999999985 35778888888999988876643 567888877777654211100
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+.....++.+++.+. |+++++++++ +++++|++|. +.|+.|.+.+ +++|.++|
T Consensus 128 --~l~~~Gi~v~~vd~~~----------------d~e~l~~~l~---~~tk~V~~e~-~~Np~~~v~d----i~~I~~la 181 (437)
T PRK05613 128 --TLNRLGIEVTFVENPD----------------DPESWQAAVQ---PNTKAFFGET-FANPQADVLD----IPAVAEVA 181 (437)
T ss_pred --HHHhcCeEEEEECCCC----------------CHHHHHHhCC---ccCeEEEEEC-CCCCCCcccC----HHHHHHHH
Confidence 1111223344554221 6788998885 4678888888 8788787777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEE
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMT 285 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~ 285 (430)
+++|+++|+|.+++ .+.. .....+..|++++| |.++|..-.+|.+++
T Consensus 182 ~~~gi~livD~t~a-~g~~-----~~p~~~GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 182 HRNQVPLIVDNTIA-TAAL-----VRPLELGADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred HHcCCeEEEECCCc-cccc-----cChHHhCCCEEEeeccceecCCCcceeEEEE
Confidence 99999999999985 2211 11112345888665 988872234555544
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-12 Score=121.33 Aligned_cols=300 Identities=13% Similarity=0.102 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhhcCCC-CCeEEEcCCch-HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 77 KPVIKLSEKLSSLTQYK-LGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~-~~~v~~~~sgt-eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
.+..++.+.+.+.++.+ .+..+++++|| .++..++.+++.. + ++.+.||+.... |-.+.-+....+
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~----~-~~gd~VI~p~~t-h~S~~kAi~~~G------ 172 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK----R-PKAKYVIWPRID-QKSCIKAISTAG------ 172 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc----C-CCCCEEEEECcC-hHHHHHHHHHcC------
Confidence 45567777788887643 24689999999 6877777765421 1 124556665544 554444333333
Q ss_pred hhhccCCCeeEeCC---CCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITT---PDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230 (430)
Q Consensus 155 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~ 230 (430)
...++++. ++.+.. |+++|+++|++.. ..+.+++..| ....+|...+ +++|.+
T Consensus 173 ------~~pv~Vd~~~d~~~~~i------------D~e~Le~aIt~~~~kai~~Vv~Tp-~t~~~g~~dd----L~eIa~ 229 (444)
T TIGR03531 173 ------FEPRVIETVLDGDELTT------------DVEDIERAIEEIGPDNILCVLSTT-SCFAPRSPDD----IEEIAK 229 (444)
T ss_pred ------CeEEEeeeeecCcCCCc------------CHHHHHHHHHhccCCCEEEEEEcC-CcCCCcchhC----HHHHHH
Confidence 12233432 222222 8999999998543 4566666666 3333333444 999999
Q ss_pred HHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEE-cHHHHHhhhccCCcccccccC
Q psy14484 231 ICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 231 l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~ 306 (430)
+|++||+++|+|++|......-.......... ..|++++| |.+...+ .-|+++. ++++.+.+.. . +..
T Consensus 230 la~k~gI~lIvDaAyg~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg-~Gg~I~~~d~el~~~i~~------~-y~g 301 (444)
T TIGR03531 230 ICANYDIPHIVNNAYGLQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPV-GGAIIYSFDENFIQEISK------S-YPG 301 (444)
T ss_pred HHHHcCCEEEEECcCcCcChhhhhhhhccccccCCCeEEEeCccCCCCCC-CEEEEEECCHHHHHHHHH------h-ccC
Confidence 99999999999999973211000000011112 24766654 8766411 2355556 5677776654 1 111
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHH
Q psy14484 307 SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
... +..++.+....+. +.. .++.++..++.+++.+.|+++ ..+.. +...+....-+++.+. .-. .+. ..
T Consensus 302 ~~~-~s~~~~~~~~ll~-~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~-~~~-~~~--~~ 375 (444)
T TIGR03531 302 RAS-ASPSLDVLITLLS-LGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLS-TLK-GKD--PT 375 (444)
T ss_pred CCC-ChHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecc-ccc-ccC--HH
Confidence 111 2233333333333 222 345566677888888888877 33332 2222222233334333 211 111 24
Q ss_pred HHHHHHHHCCcE----Eeec-------------C--------CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 382 KFFVAALKNELL----LRPI-------------G--------NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 382 ~~~~~l~~~Gv~----~~~~-------------~--------~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+...|..++|- +.++ + .++-+..+..++++|||.++++|++++
T Consensus 376 ~~g~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 376 MLGSMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL 444 (444)
T ss_pred HHHHHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence 566666666541 1121 0 123344455679999999999998763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=118.33 Aligned_cols=248 Identities=17% Similarity=0.188 Sum_probs=148.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+...++++.++++. +.+.++.++||+.|+.+++..+.. +++.||+....|.+.......
T Consensus 60 r~~~P~~~~lE~~la~le--g~~~av~~sSG~aAi~~al~all~--------~GD~Vl~~~~~yg~t~~~~~~------- 122 (384)
T PRK06434 60 RWGNPTVQAFEEKYAVLE--NAEHALSFSSGMGAITSAILSLIK--------KGKRILSISDLYGQTFYFFNK------- 122 (384)
T ss_pred CCCChhHHHHHHHHHHHh--CCCcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEecCccchHHHHHHH-------
Confidence 456788889999999998 456789999999999999987654 667888877777655332211
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
..........+++.+ +.+.++ ++ ++++++|++|. +.|+++...+ +++|.++|
T Consensus 123 --~~~~~Gi~v~fvd~~-----------------~~~~~~--l~--~~~tklv~~e~-~snpt~~v~D----i~~I~~la 174 (384)
T PRK06434 123 --VLKTLGIHVDYIDTD-----------------RLNSLD--FD--PSNYDLIYAES-ITNPTLKVPD----IKNVSSFC 174 (384)
T ss_pred --HHHhcCcEEEEECCC-----------------Chhhee--ec--CCCeeEEEEEc-CCCCCceeec----HHHHHHHH
Confidence 111222334455443 122222 32 34789999999 8888886666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc-cccEEEEE-cHHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY-LPLSLVMT-TDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~-~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
++++ +++|.++. -... ....+...|++++| |.++|.. .-.|+++. ++++.+.+.. .......
T Consensus 175 ~~~~--lvVD~t~~-s~~~-----~~pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~------~~~~~G~ 240 (384)
T PRK06434 175 HEND--VIVDATFA-SPYN-----QNPLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVE------RRKTLGS 240 (384)
T ss_pred HHcC--eEEECCCC-Cccc-----CCchhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHH------HHHhcCC
Confidence 9998 46799863 2111 22234567888776 8887731 22455655 3455554432 1111122
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----eEeecceEEEEEEeecCCccchhH
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----NFRQKGMIWAFDVIIEDPEQIETF 379 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~ 379 (430)
..+++.++.+..-|+.+ +...++-.+++..+.+.|+..+. +|+.. ...+-|.++.|++. + .+.
T Consensus 241 ~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~-~-----~~~ 312 (384)
T PRK06434 241 NPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELR-S-----MED 312 (384)
T ss_pred CCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEEC-C-----HHH
Confidence 23455443333333322 23455666677777777765422 22211 12466889999987 3 111
Q ss_pred HHHHHHHH
Q psy14484 380 SKKFFVAA 387 (430)
Q Consensus 380 a~~~~~~l 387 (430)
+.+|.+.|
T Consensus 313 ~~~f~~~l 320 (384)
T PRK06434 313 VHKFIRNL 320 (384)
T ss_pred HHHHHHhC
Confidence 34566655
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-11 Score=116.81 Aligned_cols=280 Identities=18% Similarity=0.089 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHHHHHHHHHhhhhc-----CCC
Q psy14484 52 NSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNK-----GFL 124 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~al~~~~~~~~~~-----g~~ 124 (430)
++...+++...+.+- .....+........++..+++++++.+ ...-.||+||||||..|+.+++..++.+ +.+
T Consensus 75 ~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~ 154 (460)
T COG0076 75 PPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKP 154 (460)
T ss_pred HHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 344555555555431 211222244466678888999998643 2257999999999999999999876421 112
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
.+...|+.+...|-+. .+....+..+...++... .++. |++++++++++. +.
T Consensus 155 ~~~P~ii~s~~aH~s~------------~Kaa~~lG~~~~~v~~~~~~~~i------------d~~~l~~~i~~~---t~ 207 (460)
T COG0076 155 GGKPNIVCSETAHFSF------------EKAARYLGLGLRRVPTVPTDYRI------------DVDALEEAIDEN---TI 207 (460)
T ss_pred CCCCeEEecCcchhHH------------HHHHHHhCCCceeEEeccCcccc------------CHHHHHHHHHhh---cc
Confidence 2223555666677553 232233334444444332 3333 899999999864 33
Q ss_pred E--EEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc--ccccccccCCC-CCceeeee--cccCCC
Q psy14484 204 A--IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT--GKFFACEHAEI-WPDFLCLS--KGITGG 276 (430)
Q Consensus 204 ~--vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~--g~~~~~~~~~~-~~d~~~~s--K~l~gG 276 (430)
. |+... ...++|.+-| +++|.++|+++++++|||.++.|+... .....+ ..++ ..|=++++ |....-
T Consensus 208 ~g~vV~~a-GtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~-~f~l~~vdSIt~d~HK~g~aP 281 (460)
T COG0076 208 GGVVVGTA-GTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW-DFGLEGVDSITVDGHKYGLAP 281 (460)
T ss_pred CceEEEEe-cCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCccchh-hcCCCCceEEEECcccccCCC
Confidence 3 66666 7778888888 999999999999999999999887321 110000 0122 24555555 543322
Q ss_pred ccccEEEEEcHH--HHHhhhcc-----C-CcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHH
Q psy14484 277 YLPLSLVMTTDK--IYNSIYYK-----N-NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKAL 345 (430)
Q Consensus 277 ~~~ig~~~~~~~--~~~~~~~~-----~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~---~~~~~~~~l~~~l 345 (430)
.+.|+++.+.+ +.+.+... + ....+...++.++ ...++.+..+..+..+++.+ +..++.+++.+.|
T Consensus 282 -~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~--~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l 358 (460)
T COG0076 282 -IGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPG--RQALALYANLRRLGREGYRKLLDRTLELARYLAEEL 358 (460)
T ss_pred -CCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccch--HHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 57888988754 44433320 0 1111122222222 24456667777776555554 4457888888888
Q ss_pred HchhcCCCeeeEeecceEEEEEEe
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVI 369 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~ 369 (430)
+++..+.. -..+....++|..+
T Consensus 359 ~~~~~~e~--~~~p~l~~V~fr~~ 380 (460)
T COG0076 359 EKLGDFEL--VNEPELPIVAFRLK 380 (460)
T ss_pred HhCCCcEe--ecCCccceEEEEcC
Confidence 77622222 12344555666654
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-10 Score=100.11 Aligned_cols=341 Identities=12% Similarity=0.120 Sum_probs=206.4
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHH-HHhhcccc---ccC---CCCCHHHHHHHHHHHhhcCCCCCeEEEc
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKN-QLNKLEHV---MLS---NLTHKPVIKLSEKLSSLTQYKLGHCFYG 100 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~-~~~~~~~~---~~~---~~~~~~~~~l~~~l~~~~~~~~~~v~~~ 100 (430)
+.+.+|--||| .++||..++.+.+..++ ..++.... ..+ ......-+.+..+|+.+.++...+|..+
T Consensus 26 f~lp~~viyLd------gnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~ 99 (407)
T COG3844 26 FALPGGVIYLD------GNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVT 99 (407)
T ss_pred ccCCCCeEEee------ccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEe
Confidence 34556678888 36788666566555554 33433221 111 1222455677888888999889999999
Q ss_pred CCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcC-CCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCC
Q psy14484 101 SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN-SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNS 179 (430)
Q Consensus 101 ~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~-~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (430)
.|-+--+...+.++.+.. .+++||+++. +|.--...+..+... .....+...+.
T Consensus 100 dtts~nl~k~L~aalr~~------~~r~vIv~E~~~fpTdly~a~g~~~~-------~~~~~~~~~~~------------ 154 (407)
T COG3844 100 DTTSINLFKVLAAALRPQ------EGRRVIVSEGDNFPTDLYIAEGLADL-------LGIGYDLEGVI------------ 154 (407)
T ss_pred CCcchHHHHHHHHHhccC------CCceEEeecCCCCCcchhhhcchhhh-------hcccccceeee------------
Confidence 888777666666665532 3455666654 333211111110000 00000111111
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccccc
Q psy14484 180 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259 (430)
Q Consensus 180 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~ 259 (430)
.+.+++++++ +++++|.++. |+.-+|.... +.+|-+++++||++++.|=+|+ .|. ...+.
T Consensus 155 -------~P~~~~~~~~---dd~AvV~L~~-V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-aGa----vp~~L 214 (407)
T COG3844 155 -------APRALEEAIT---DDVAVVLLSH-VNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-AGA----VPVDL 214 (407)
T ss_pred -------ChHHHHHhhc---cceEEEEecc-ccccccceee----HHHHHHHHHhcCceEEeehhcc-cCC----cceee
Confidence 3457777775 7899999999 9999998877 9999999999999999998887 322 12232
Q ss_pred CCCCCcee--eeecccCCCccccEEEEEcHHHHHhhhcc-----CCcccccccCCC------------CCCHHHHHHHHH
Q psy14484 260 AEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYK-----NNINIFLHSHSY------------SGNPLACCAALA 320 (430)
Q Consensus 260 ~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-----~~~~~~~~~~t~------------~~~~~~~~aa~~ 320 (430)
-....|+. |--|-|.||.-..+++++.++..+...+. +..+++.....| +.+.+++++...
T Consensus 215 h~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~ 294 (407)
T COG3844 215 HAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEG 294 (407)
T ss_pred cccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhh
Confidence 23334544 45588887644577788776654443221 122222222111 112356666667
Q ss_pred HHHHHhh---cCHHHHHHHHHHHHHHHHHch-hcCCC--ee--eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCc
Q psy14484 321 TLEIFNK---DNILQRISQDMKKITKALTSL-ITHPK--II--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 392 (430)
Q Consensus 321 ~l~~~~~---~~~~~~~~~~~~~l~~~l~~l-~~~~~--~~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv 392 (430)
+|++..+ .+++++.-.+.++|.+.++.. ..++. .+ .-..+|.-+.+..+ . +.++++.|.++||
T Consensus 295 aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp-~--------~~~V~qaLi~rGV 365 (407)
T COG3844 295 ALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP-H--------GYQVMQALIDRGV 365 (407)
T ss_pred hhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC-c--------HHHHHHHHHHcCc
Confidence 7776644 345556666777777777654 22222 11 11234444444443 2 4689999999999
Q ss_pred EEee-cCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 393 LLRP-IGNTVYLMP-PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 393 ~~~~-~~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.-- .++.+||.| +++.+-+|+-..++.|++++++.
T Consensus 366 igD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 366 IGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred cccccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 8654 358999876 45678999999999999999865
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-11 Score=110.81 Aligned_cols=290 Identities=15% Similarity=0.173 Sum_probs=170.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....+++.++++- +.+..+.++||..|+..++..... ++++||..+..|.+....+..+
T Consensus 59 R~~nPT~~~lE~~~a~LE--g~~~~~afsSGmaAI~~~~l~ll~--------~GD~vl~~~~~YG~t~~~~~~~------ 122 (396)
T COG0626 59 RTGNPTRDALEEALAELE--GGEDAFAFSSGMAAISTALLALLK--------AGDHVLLPDDLYGGTYRLFEKI------ 122 (396)
T ss_pred cCCCccHHHHHHHHHHhh--CCCcEEEecCcHHHHHHHHHHhcC--------CCCEEEecCCccchHHHHHHHH------
Confidence 455778889999999887 567889999999999999887775 5789999998897753332221
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
+..+..++.++... +.+++++++. ++++++|++|+ +.|+.--+.. +.+|.++|
T Consensus 123 ---l~~~gi~~~~~d~~-----------------~~~~~~~~~~--~~~tk~v~lEt-PsNP~l~v~D----I~~i~~~A 175 (396)
T COG0626 123 ---LQKFGVEVTFVDPG-----------------DDEALEAAIK--EPNTKLVFLET-PSNPLLEVPD----IPAIARLA 175 (396)
T ss_pred ---HHhcCeEEEEECCC-----------------ChHHHHHHhc--ccCceEEEEeC-CCCccccccc----HHHHHHHH
Confidence 11122333333322 4456666664 25899999999 9998876666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcH-HHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTD-KIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~-~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++++|++...- ..++.+....|++ +..|.++|+.=-+ |.++++. ++.+.+... . ....+.
T Consensus 176 ~~~g~~vvVDNTfatP------~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~--~-~~~~G~-- 244 (396)
T COG0626 176 KAYGALVVVDNTFATP------VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA--Q-RANTGA-- 244 (396)
T ss_pred HhcCCEEEEECCcccc------cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHH--H-HhhcCC--
Confidence 9999999999986521 1233344457877 4669999853224 4455454 444444220 0 000111
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
...|.-+.-.+-.|+.+. -..++..+++..+.+.|++-+ .+|... ...+.|.++.|++. ++
T Consensus 245 ~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~-~~- 320 (396)
T COG0626 245 VLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELK-NE- 320 (396)
T ss_pred CCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeC-Ch-
Confidence 223333332222222221 123444455555555555421 112110 12358899999998 53
Q ss_pred ccchhHHHHHHHHHHHCC----------cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALKNE----------LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~G----------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.+.+|.+.|.--. ++..| .++-+|+++.. |+++.+++.|++++
T Consensus 321 ----~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al 392 (396)
T COG0626 321 ----EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQAL 392 (396)
T ss_pred ----HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHH
Confidence 11456666653221 11111 13678997664 45666666666666
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
+.+
T Consensus 393 ~~~ 395 (396)
T COG0626 393 AKA 395 (396)
T ss_pred Hhh
Confidence 543
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-10 Score=110.44 Aligned_cols=317 Identities=10% Similarity=0.041 Sum_probs=179.9
Q ss_pred CHH-HHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC--eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 52 NSY-INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 52 ~p~-v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
+|. ..+++.+.+-..+ ++.....+...+..+.|.++++.+.+ -++++.|||.++++++..+... ++++
T Consensus 15 ~~~~~~~~~~~~~~~~~--HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~-------~g~~ 85 (374)
T TIGR01365 15 RPGWSIEELKNAPLGRS--HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGC-------RGVD 85 (374)
T ss_pred CchhhHHHHhhhhcccC--cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCC-------CCCe
Confidence 355 4455554332222 22223335666778888888863222 3677889999999999987631 4456
Q ss_pred EEEEcCCCCCcc-h-hhhccCCCccchhhhhccCC-CeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 129 FICLQNSYHGET-L-GALAVTNIQSFKEIYTSLLN-KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 129 vl~~~~~yhg~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
+++. + +.|.. . ..... +.. ++..+..+... .. ++++++. + ..+.
T Consensus 86 vLv~-g-~FG~r~~~eia~~------------~g~~~v~~l~~~~g~-~~-----------~~~~ve~--~---~~v~-- 132 (374)
T TIGR01365 86 VLAW-E-SFGKGWVTDVTKQ------------LKLPDVRVLEAEYGK-LP-----------DLKKVDF--K---NDVV-- 132 (374)
T ss_pred EEEE-C-HHHHHHHHHHHHh------------cCCCCcEEEcCCCCC-CC-----------CHHHcCC--C---CCEE--
Confidence 6653 3 33432 2 11111 111 12233333211 11 6666652 1 2333
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEE
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLV 283 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~ 283 (430)
+.. .-.++|...| ++++...+ +++++|+|.+-+ +|- ..+.++ + .|++..| |+|++- -.+|.+
T Consensus 133 -~vh-nETSTGv~np----v~~i~~~~--~~~lliVDavSs-~g~--~~l~~d--~--iDv~~tgsQK~L~~p-pGls~v 196 (374)
T TIGR01365 133 -FTW-NGTTSGVRVP----NGDFIPAD--REGLTICDATSA-AFA--QDLDYH--K--LDVVTFSWQKVLGGE-GAHGML 196 (374)
T ss_pred -Eec-CCCchheecc----cccccccc--CCCcEEEEccch-hcC--CCCChh--H--CcEEEEechhccCCC-CceEEE
Confidence 333 3346787776 54444222 589999998865 542 223333 2 6777655 999873 248899
Q ss_pred EEcHHHHHhhhccCC----cc------------ccc-ccCCCCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHH
Q psy14484 284 MTTDKIYNSIYYKNN----IN------------IFL-HSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKIT 342 (430)
Q Consensus 284 ~~~~~~~~~~~~~~~----~~------------~~~-~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~ 342 (430)
+.+++.++....... .+ ... ....++++..++.++..+|+.++++ +..++.+++++.++
T Consensus 197 ~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~ 276 (374)
T TIGR01365 197 ILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLE 276 (374)
T ss_pred EECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 999988766542100 01 001 1223333444666667777655443 34566677888888
Q ss_pred HHHHchhcCCCeee--EeecceEEEEEEeecCC------ccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCC
Q psy14484 343 KALTSLITHPKIIN--FRQKGMIWAFDVIIEDP------EQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYIL 409 (430)
Q Consensus 343 ~~l~~l~~~~~~~~--~~~~g~~~~~~~~~~~~------~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~ 409 (430)
+.++++.....+.. .........+.+. .+. ...-+++..+.+.|.++|+.+.++ ++.+||.-.-.+
T Consensus 277 ~~l~~lg~l~~~~~~~~~rS~tvt~v~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i 355 (374)
T TIGR01365 277 AFVAKNNWIHFLAETPEIRSNTSVCLKVV-DPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATV 355 (374)
T ss_pred HHHHHCCCcccCCCChhhcCCCeEEEEeC-CccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcC
Confidence 88887731222221 1122334445553 221 111223467999999999988865 478999988889
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
++++++.+++.|.-++.+
T Consensus 356 ~~~di~~l~~~l~~~~~~ 373 (374)
T TIGR01365 356 EKSDLECLCPWLDWAFAL 373 (374)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 999999999999877654
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-10 Score=104.84 Aligned_cols=305 Identities=13% Similarity=0.131 Sum_probs=164.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH-HHHHHHHhhhhcC------CCCCcEEEEEcCCCCCcchhhhcc
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV-ALKMSFHYWYNKG------FLNKKKFICLQNSYHGETLGALAV 146 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~-al~~~~~~~~~~g------~~~~~~vl~~~~~yhg~~~~~~~~ 146 (430)
+..+-..++++.+++++++.+++++...++|-.++. ++.-+... ...| +.++.+.+.+.|+|--|...+-..
T Consensus 66 G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~-G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~ 144 (425)
T PF12897_consen 66 GGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLH-GVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF 144 (425)
T ss_dssp S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH---TT-SS-GGGSS--EEEEEES--HHHHHHHHHC
T ss_pred CccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhc-CCCCCCCCchhccCceEEecCCCchHHHHHHHhh
Confidence 444556688888999999899998887776666554 33222211 1111 124678999999997664443332
Q ss_pred CCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
++..+++|-...++ |+|.+|+.+.+ .+.++.++|-|...|++| +.++.+-.+
T Consensus 145 ---------------Giemi~VpM~~dGP-----------DmD~Ve~LV~~-D~svKGiWcVP~ySNPtG-~tySde~vr 196 (425)
T PF12897_consen 145 ---------------GIEMIPVPMTEDGP-----------DMDMVEELVAE-DPSVKGIWCVPKYSNPTG-ITYSDEVVR 196 (425)
T ss_dssp ---------------T-EEEEEEEETTEE------------HHHHHHHTHT-STTEEEEEE-SSS-TTT------HHHHH
T ss_pred ---------------CcEEEecCCCCCCC-----------CHHHHHHHHhc-CCccceEEeCCCccCCCC-ccCCHHHHH
Confidence 22345555444444 99999999865 468999999995555556 889999999
Q ss_pred HHHHH-HHhcCCEEEEecccc--CCCCccc-cc------ccccCCCCCce----eeeec-ccCCCccccEEEEEcHHHHH
Q psy14484 227 LVREI-CNNYNIHLIADEIAV--GCGRTGK-FF------ACEHAEIWPDF----LCLSK-GITGGYLPLSLVMTTDKIYN 291 (430)
Q Consensus 227 ~l~~l-~~~~gi~li~DEv~~--g~g~~g~-~~------~~~~~~~~~d~----~~~sK-~l~gG~~~ig~~~~~~~~~~ 291 (430)
++.++ +...+..++.|.+|+ .+..... .- .....| .||. .+.|| .+.| ..|+++..+++-++
T Consensus 197 rlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AG-npdrv~~F~STSKITf~G--aGva~~aaS~~Nl~ 273 (425)
T PF12897_consen 197 RLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAG-NPDRVYVFASTSKITFPG--AGVAFFAASEANLA 273 (425)
T ss_dssp HHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT--TTSEEEEEESTTTS-TT--SS-EEEEE-HHHHH
T ss_pred HHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHHHHHcC-CCCeEEEEecccccccCC--cceeeeecCHHHHH
Confidence 99988 456899999999987 1211111 00 011122 3553 36788 4555 46999999998777
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHH--------chh-cCCCeeeEeec-
Q psy14484 292 SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDMKKITKALT--------SLI-THPKIINFRQK- 360 (430)
Q Consensus 292 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~-~~~~~~~~~~~~l~~~l~--------~l~-~~~~~~~~~~~- 360 (430)
.+.. .....|.+.+-+.+..=..-+.. .+ ++.+++++.++.++-+++ +|. .........++
T Consensus 274 ~~~~------~~~~~tIgpdKvNQLRHvrff~d--~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~G 345 (425)
T PF12897_consen 274 WIKK------HLSVQTIGPDKVNQLRHVRFFKD--AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKG 345 (425)
T ss_dssp HHHH------HHHHH-S---HHHHHHHHHHHHS--HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SB
T ss_pred HHHH------HhcCceeCccHHHHHHHHHHhcC--hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCC
Confidence 7665 22334555565655443333321 13 566677666666655443 232 22343444444
Q ss_pred ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 361 GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 361 g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
|.|+.++.. ++ + |.++.+.+++.||...+. ...||+.|+ .-+.+|++.+++.+.-++.
T Consensus 346 GYFIsld~~-~G---~---AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS-~P~leel~~Am~~~~~cv~ 414 (425)
T PF12897_consen 346 GYFISLDVL-DG---T---AKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPS-YPSLEELETAMDVFATCVK 414 (425)
T ss_dssp SS-EEEEES-TT-------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--S-SS-HHHHHHHHHHHHHHHH
T ss_pred ceEEEEecC-CC---h---HHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence 556666665 42 2 688999999999999973 258999988 5678899999988866553
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.5e-11 Score=111.14 Aligned_cols=350 Identities=13% Similarity=0.081 Sum_probs=189.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
....+||+.|-.++ +...++..+|+.. +.. .+..++...+|.+..++++ +.+.++++.+|..+...++
T Consensus 39 s~dV~IDLrSDTgT---~apS~~m~aAM~~----GDD---~Y~gdpSv~~Lee~vael~--G~E~alpthqGRgaE~Il~ 106 (467)
T TIGR02617 39 SEDVFIDLLTDSGT---GAVTQSMQAAMMR----GDE---AYSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYI 106 (467)
T ss_pred CCCeEEECccCCCC---CCCCHHHHHHHHc----CCc---ccccCchHHHHHHHHHHHh--CCceEEECCCCchHHHHHH
Confidence 45678999997554 2245677777764 322 1345667779999999999 7788999999999999998
Q ss_pred HHHHHhhhhcCCCCCcEEE------EEcCCCCCcch-hhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFI------CLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl------~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+..+.. +++.+. ++...||-.+. +...+++...... ...+..-.+.++.+.+.
T Consensus 107 ~~~~~~-------~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l----~~~ea~~~~~~~~fkG~--------- 166 (467)
T TIGR02617 107 PVLIKK-------REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNV----YTKEAFDTGVRYDFKGN--------- 166 (467)
T ss_pred Hhhccc-------ccccccccccccccceEEEEecchHHHHHcCceeecc----cchhhcccccCCCCCCC---------
Confidence 877641 112121 11223333221 2222233111000 00000000011111111
Q ss_pred HHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc----CC------CCccc
Q psy14484 185 RCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV----GC------GRTGK 253 (430)
Q Consensus 185 ~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~----g~------g~~g~ 253 (430)
-|++.|++.|++++ +++..+.++- .+|..|..+.+.+.++++.++|++||+.+++|-+-- -| +..+.
T Consensus 167 -~dl~~le~~I~~~g~~~i~~v~~tl-t~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~ 244 (467)
T TIGR02617 167 -FDLEGLERGIEEVGPNNVPYIVATI-TCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW 244 (467)
T ss_pred -cCHHHHHHHHhhcCCCCceeeeeeE-EEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC
Confidence 28999999998752 4666666665 666667788899999999999999999999996531 01 11111
Q ss_pred c---cccccCCCCCcee--eeecccCCCccccEEEE-EcHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHH-HH
Q psy14484 254 F---FACEHAEIWPDFL--CLSKGITGGYLPLSLVM-TTDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALA-TL 322 (430)
Q Consensus 254 ~---~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~-~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~-~l 322 (430)
. .+.+... ..|.+ |+||.++ .|+|.++ ++++ +.+.... ..-.+....|+++-.---..|++ .|
T Consensus 245 si~eI~rE~~~-~aDsvt~slsKglg---ApvGg~Lag~d~~~~~l~~~~~~--~~i~~EGf~tYGGlagrd~ea~a~Gl 318 (467)
T TIGR02617 245 SIEQITRETYK-YADMLAMSAKKDAM---VPMGGLLCFKDDSFFDVYTECRT--LCVVQEGFPTYGGLEGGAMERLAVGL 318 (467)
T ss_pred CHHHHHHHhhc-cCCEEEEEcCCCCC---CcccceEEecchhHHHHHHHHHh--hcccccCCcCcCchhHHHHHHHHhhh
Confidence 0 0001111 24655 5668765 5877554 4443 2222221 01111223466553321112222 34
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEee--cCCccchhH-HHHHHHHHH-HCCcEEee--
Q psy14484 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII--EDPEQIETF-SKKFFVAAL-KNELLLRP-- 396 (430)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~-a~~~~~~l~-~~Gv~~~~-- 396 (430)
+..-++++..+--...++|.++|.+. +.|.+. .-|-+. .++-.. +... ..+| +..++-+|. +-||-...
T Consensus 319 ~e~~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~-~Gghav--~iDa~~~lphip-~~~fpa~al~~~ly~~~GiR~~e~G 393 (467)
T TIGR02617 319 YDGMNLDWLAYRINQVQYLVNGLEEI-GVVCQQ-AGGHAA--FVDAGKLLPHIP-ADQFPAHALACELYKVAGIRAVEIG 393 (467)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhC-CCcEEe-cCccEE--EEehhhhCCCCC-hhhCcHHHHHHHHHHHcCcceEeec
Confidence 43334455554445677888888775 455543 333222 232210 0000 1111 345555553 33553221
Q ss_pred --------c--------CCEEEEeCCCCC-CHHHHHHHHHHHHHHHH
Q psy14484 397 --------I--------GNTVYLMPPYIL-NKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 397 --------~--------~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~ 426 (430)
. -..+|+.++.-. |.+++|...+++..+.+
T Consensus 394 ~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 394 SLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 0 146788887765 99999999999988875
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-10 Score=106.61 Aligned_cols=190 Identities=12% Similarity=0.114 Sum_probs=129.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+...+....+.+.++++. +.++++.++||..|...|+..++. ..++||.+...|.|.......
T Consensus 73 r~~nPt~~~le~~iaal~--ga~~~l~fsSGmaA~~~al~~L~~--------~g~~iV~~~~~Y~gT~~~l~~------- 135 (409)
T KOG0053|consen 73 RSGNPTRDVLESGIAALE--GAAHALLFSSGMAAITVALLHLLP--------AGDHIVATGDVYGGTLRILRK------- 135 (409)
T ss_pred cCCCCchHHHHHHHHHHh--CCceEEEecccHHHHHHHHHHhcC--------CCCcEEEeCCCcccHHHHHHH-------
Confidence 344567778888888887 566799999999999999998874 678899999999886432221
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......+..++.. .+++.+++++. +++.+|++|. +.|+...++. +++|.++|
T Consensus 136 --~~~~~gie~~~vd~-----------------~~~~~~~~~i~---~~t~~V~~ES-PsNPll~v~D----I~~l~~la 188 (409)
T KOG0053|consen 136 --FLPKFGGEGDFVDV-----------------DDLKKILKAIK---ENTKAVFLES-PSNPLLKVPD----IEKLARLA 188 (409)
T ss_pred --HHHHhCceeeeech-----------------hhHHHHHHhhc---cCceEEEEEC-CCCCcccccc----HHHHHHHH
Confidence 11111222333322 26677777775 5899999999 9999885555 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccc-cEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLP-LSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~-ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++++|+...+.. -++.+.+..||++ ..|.++|+.=- .|.++.+ +++...+.. ....-.+
T Consensus 189 ~~~g~~vvVDnTf~~p~------~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~------~~~~lg~ 256 (409)
T KOG0053|consen 189 HKYGFLVVVDNTFGSPY------NQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKF------LQEDLGW 256 (409)
T ss_pred hhCCCEEEEeCCcCccc------ccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHH------HHHHhcC
Confidence 99999999999876431 2334445578885 56999984323 3455564 677766654 2223334
Q ss_pred CCCHHHHHHH
Q psy14484 309 SGNPLACCAA 318 (430)
Q Consensus 309 ~~~~~~~~aa 318 (430)
..+|..+.-.
T Consensus 257 ~~~p~~~~ll 266 (409)
T KOG0053|consen 257 CEDPFDLFLL 266 (409)
T ss_pred CCCHHHHHHH
Confidence 5566655433
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-13 Score=122.50 Aligned_cols=198 Identities=17% Similarity=0.236 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
.+|++.+++.+. ..+.. .+..++...++++.+++++ +.+.++|++|||.||..+++..+. +...||
T Consensus 7 ~~~~m~~a~~~a-~~gd~---~Yg~D~~~~~l~~~i~~l~--g~e~a~f~~sGT~An~~al~~~~~--------~~~~vi 72 (290)
T PF01212_consen 7 PTPAMLEAMAAA-NVGDD---AYGEDPTTARLEERIAELF--GKEAALFVPSGTMANQLALRAHLR--------PGESVI 72 (290)
T ss_dssp S-HHEEHHHHHT-TSB-C---CTTSSHHHHHHHHHHHHHH--TSSEEEEESSHHHHHHHHHHHHHH--------TTEEEE
T ss_pred CCHHHHHHHHcc-ccCCc---ccCCChhHHHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHHh--------cCCcee
Confidence 689999999443 33222 3566788899999999999 667788999999999999998885 556666
Q ss_pred EEcCCCCCc--chhhh-ccCCCccchhhhhccCCCeeEeCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHhC---CCCeE
Q psy14484 131 CLQNSYHGE--TLGAL-AVTNIQSFKEIYTSLLNKTYIITTPDSR-NINKGNSANEIARCAIFDLEILLKKN---HNKIA 203 (430)
Q Consensus 131 ~~~~~yhg~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~ 203 (430)
.-+. .|-+ ..++. .. .+...++++... ... ++++|++.+.++ ..+++
T Consensus 73 ~~~~-aHi~~~E~ga~~~~--------------~G~~~~~l~~~~~G~l-----------~~~~l~~~~~~~~~h~~~~~ 126 (290)
T PF01212_consen 73 CADT-AHIHFDETGAIEEL--------------SGAKLIPLPSDDDGKL-----------TPEDLEAAIEEHGAHHPQPA 126 (290)
T ss_dssp EETT-EHHHHSSTTHHHHH--------------TTCEEEEEBECTGTBB------------HHHHHHHHHHHTGTSGGEE
T ss_pred cccc-ceeeeeccchhhHh--------------cCcEEEECCCcccCCC-----------CHHHHHHHhhhccccCCCcc
Confidence 5443 3322 11111 11 222334444333 222 889999999884 35789
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--CCCcccccccccCCCCCceeeeecccCCCccccE
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLS 281 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g--~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig 281 (430)
+|.+|. .++..|..+++.+.+++|.++|++||+.|++|-+--. ....+. ......-..|.+++|-.-++| .+.|
T Consensus 127 ~v~le~-t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g-~~~G 202 (290)
T PF01212_consen 127 VVSLEN-TTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGG-APGG 202 (290)
T ss_dssp EEEEES-SBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT--SSSE
T ss_pred EEEEEe-cCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEcccc-cccc
Confidence 988888 7777666889999999999999999999999965210 000010 111111236888766333333 4666
Q ss_pred E-EEEcHHHHHh
Q psy14484 282 L-VMTTDKIYNS 292 (430)
Q Consensus 282 ~-~~~~~~~~~~ 292 (430)
+ +++++++++.
T Consensus 203 avl~~~~~~i~~ 214 (290)
T PF01212_consen 203 AVLAGNKEFIAK 214 (290)
T ss_dssp EEEEESHHHHHH
T ss_pred eEEEechHHHHH
Confidence 5 5567775443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-09 Score=99.06 Aligned_cols=307 Identities=18% Similarity=0.200 Sum_probs=180.4
Q ss_pred CCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 74 LTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
+..-.+..+++.+.+.- |++++.|++|.|++.|+...++++... +++.|+++-|-|.-++......++...
T Consensus 114 Gv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~-------~~~GvliPiPQYPLYsAti~l~~~~~v 186 (475)
T KOG0258|consen 114 GVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG-------KKTGVLIPIPQYPLYSATISLLGGTQV 186 (475)
T ss_pred CChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC-------CCCceEeecCCCchhHHHHHHhCCccc
Confidence 33456677777777664 567889999999999999999988863 678899999999877554444333111
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---CCeEEEEEccccccCCCcccCChHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLV 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l 228 (430)
+ .+......+ ..|.++|++.++++. +-.++++++| .| ++| .+.+.+-+++|
T Consensus 187 ------~-----YyLdEe~~W------------~ld~~el~~~~~eA~k~i~~r~lvvINP-GN-PTG-qvls~e~ie~i 240 (475)
T KOG0258|consen 187 ------P-----YYLDEESNW------------SLDVAELERSVDEARKGINPRALVVINP-GN-PTG-QVLSEENIEGI 240 (475)
T ss_pred ------c-----eeeccccCC------------CCCHHHHHHHHHHHhccCCceEEEEECC-CC-ccc-hhhcHHHHHHH
Confidence 0 111111111 227888888888762 2356677777 54 445 66788999999
Q ss_pred HHHHHhcCCEEEEeccccCCCC-ccc-ccccc----cCC-CCCc------eeeeecccCC--CccccEEEE---EcHHHH
Q psy14484 229 REICNNYNIHLIADEIAVGCGR-TGK-FFACE----HAE-IWPD------FLCLSKGITG--GYLPLSLVM---TTDKIY 290 (430)
Q Consensus 229 ~~l~~~~gi~li~DEv~~g~g~-~g~-~~~~~----~~~-~~~d------~~~~sK~l~g--G~~~ig~~~---~~~~~~ 290 (430)
.++|.+.+++|+.||||..--+ .++ +.++. ..+ -.|| +-+.||++.| | .+-|+.- ..++..
T Consensus 241 ~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG-~RGGYmEv~n~~prv~ 319 (475)
T KOG0258|consen 241 ICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECG-QRGGYMESLNRDPRVK 319 (475)
T ss_pred HHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeec-ccCCeeecccCChhHH
Confidence 9999999999999999884333 332 33332 122 2343 2246787665 5 4556542 234444
Q ss_pred Hhhhcc-------CCccccc----ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEee
Q psy14484 291 NSIYYK-------NNINIFL----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQ 359 (430)
Q Consensus 291 ~~~~~~-------~~~~~~~----~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 359 (430)
+.+.+- ...+... ......+.+ ..+ +..-+.+.....++.++..+.+.++++ +++...+.
T Consensus 320 ~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~-----Sy~-~~~~Ekd~il~~l~~ra~l~~~~~ns~---~gi~cn~~ 390 (475)
T KOG0258|consen 320 QQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDP-----SYD-LFSSEKDGILSSLRSRAKLTEDAFNSL---EGISCNPV 390 (475)
T ss_pred HHHHHHHhhhhcCCccchhhhceecCCCCCCCc-----chh-hhhhhhHhHHHHHHHHhHHHHHHHhhc---CceeeccC
Confidence 443320 0000000 000111111 000 111123456677788888888888766 56677788
Q ss_pred cceEEEEEEeecCCc-cchhH-------HHHHHHHHHHC-CcEEeecC------C--EEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 360 KGMIWAFDVIIEDPE-QIETF-------SKKFFVAALKN-ELLLRPIG------N--TVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 360 ~g~~~~~~~~~~~~~-~~~~~-------a~~~~~~l~~~-Gv~~~~~~------~--~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+|.|+.|... .-.. ..+.. -...|.+|++. ||.+.|+. + .+|.+ +..+. + +.+++++
T Consensus 391 qGAMY~fP~i-~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~T---iLp~~-~-~~i~~~~ 464 (475)
T KOG0258|consen 391 QGAMYLFPQI-SLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTT---ILPPG-L-EIIEKFK 464 (475)
T ss_pred ccceeecccc-cCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEe---ecCch-h-HHHHHHH
Confidence 9999987654 2110 00000 02345566655 99999862 2 34543 22222 5 8888888
Q ss_pred HHHHHhh
Q psy14484 423 QTFNEVI 429 (430)
Q Consensus 423 ~~l~~~~ 429 (430)
+.-.+.+
T Consensus 465 ~fH~~f~ 471 (475)
T KOG0258|consen 465 KFHAEFM 471 (475)
T ss_pred HHHHHHH
Confidence 8776654
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-10 Score=106.86 Aligned_cols=327 Identities=9% Similarity=0.001 Sum_probs=192.0
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhcccc--------ccCCCCCHHHHHHHHHHHhhcCCC--CCeEEEcCCchH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--------MLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGAS 105 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l~~~~~~~--~~~v~~~~sgte 105 (430)
.+.|..|-.. -+++|++++++.+.++... ++.........+..+.|.++++.+ .+-+++..|||.
T Consensus 8 ~~~f~pGP~~-----lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~ 82 (365)
T PLN02452 8 VFNFSAGPAT-----LPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST 82 (365)
T ss_pred eEeeeCCCCC-----CCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence 4566665221 3789999988876443211 111112256677888888888632 223455579999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC-CCCCCC-CCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT-TPDSRN-INKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 183 (430)
++++++..+.. +++++++...++.|....-.+.. + ........ .+..+. .+
T Consensus 83 ~~ea~~~nl~~--------~~~~~l~~~~G~fg~r~~~~a~~--------~---g~~~~~~~~~~~~~~~~~-------- 135 (365)
T PLN02452 83 QFAAIPLNLCK--------PGDKADFVVTGSWSKKAAKEAKK--------Y---CKTNVIASGKDEKYTKIP-------- 135 (365)
T ss_pred HHHHHHHhcCC--------CCCeEEEEECCHHHHHHHHHHHH--------h---CCCcEEEecCCCCCCCCC--------
Confidence 99999887764 44566666666655432211100 0 01111110 111000 11
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~ 263 (430)
+++++ +. +.++..|.+.+ ....+|+...+ ++++. ++++++|.+++ ++- ....++.+++
T Consensus 136 ---~~~~~----~~-~~~~~~v~~~h-nETstGv~~~~---~~~i~------~~~lvVDa~Ss-~g~--~pidv~~~~v- 193 (365)
T PLN02452 136 ---SVSEW----EL-TPDAKFVHICA-NETIHGVEFKD---YPDVG------NVPLVADMSSN-FLS--KPVDVSKYGV- 193 (365)
T ss_pred ---ChHHc----CC-CCCCcEEEECC-CCCCCcEecCc---ccccC------CCeEEEECCcc-ccC--cccCHHHcCE-
Confidence 34443 22 24567777766 66667864222 44443 38999999987 432 2344444554
Q ss_pred CceeeeecccCCCccccEEEEEcHHHHHhhhccCCccc------ccccCCC-CCCHHHHHHHHHHHHHHhhc----CHHH
Q psy14484 264 PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI------FLHSHSY-SGNPLACCAALATLEIFNKD----NILQ 332 (430)
Q Consensus 264 ~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~------~~~~~t~-~~~~~~~~aa~~~l~~~~~~----~~~~ 332 (430)
|+.+.-|.+|. ..+|.+++++++.+.+... .+.. ....+++ +++..++.+..++|+.++++ ...+
T Consensus 194 -~~~saqK~lGP--~Gl~~v~vr~~~l~~~~~~-~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~ 269 (365)
T PLN02452 194 -IYAGAQKNVGP--SGVTIVIIRKDLIGNARPI-TPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEK 269 (365)
T ss_pred -EEEecccccCC--CCeEEEEEcHHHHhhcccC-CCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 66666698853 3489999999988665431 0000 0112333 44556777777889877653 3556
Q ss_pred HHHHHHHHHHHHHHchhcC-CC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCC
Q psy14484 333 RISQDMKKITKALTSLITH-PK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPY 407 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~-~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~ 407 (430)
+.+++.+++++.|++...+ .. ..........+.|.+. +. ....+|.+.+.++|++..++. +.+|++.=-
T Consensus 270 r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~-~~-----~~~~~f~~~~~~~g~~~~~G~r~~gg~R~s~yn 343 (365)
T PLN02452 270 RNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLG-GS-----ELEAEFVKEAAKAGMVQLKGHRSVGGMRASIYN 343 (365)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcC-Cc-----hhHHHHHHHHHHCCCcccCCccccCceEEECcC
Confidence 7788888888888765322 11 1101112344555555 31 124789999999999998763 348999888
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~ 426 (430)
.++.++++.+++.+++.-.
T Consensus 344 a~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 344 AMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999999999987654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=113.29 Aligned_cols=315 Identities=12% Similarity=0.061 Sum_probs=179.6
Q ss_pred ccCCC-CCHHHHHHHHHHHhhccccccCCC------CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhh
Q psy14484 46 NLFGH-SNSYINKALKNQLNKLEHVMLSNL------THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYW 118 (430)
Q Consensus 46 ~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~ 118 (430)
...+| -++.|.+++.+....+..+.+ +. ..+...+++..++++++.+++++.++.++|.+.++++...+.
T Consensus 111 G~y~~~~P~~v~~~i~~~~~~~TaytP-YqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~-- 187 (993)
T PLN02414 111 GYYNTHVPPVILRNILENPGWYTQYTP-YQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNI-- 187 (993)
T ss_pred CCCCccCCHHHHHHHHhChHHHhhcCC-CchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhc--
Confidence 34444 456666888876554433221 11 124456788899999998899999999999999977665432
Q ss_pred hhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 119 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 119 ~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
.+| ++++|++.+..|... ...+... ......++..++.+ +.+ ..
T Consensus 188 -~~g--~~~~VlVs~~~hP~~-~~v~~t~--------a~~~GieV~~v~~~-----------------~~~----~~--- 231 (993)
T PLN02414 188 -LKG--KKKKFLIASNCHPQT-IDVCQTR--------ADGLGLEVVVADEK-----------------DFD----YS--- 231 (993)
T ss_pred -ccC--CCCEEEEcCccCHhH-HHHHHHh--------hhhcCCEEEEecch-----------------hhc----cc---
Confidence 111 346677766555443 2222100 11122333444332 111 11
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cc---c
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KG---I 273 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~---l 273 (430)
.+.++++++ . +.+..|.+.+ +++|.++|+++|+++++ .++. ++-.+ . -..-.+..|+++.+ |. +
T Consensus 232 ~~~v~~vlv-q-~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~--l-~~pge~GADi~vgsgqKwg~P~ 300 (993)
T PLN02414 232 SGDVCGVLV-Q-YPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTM--L-KPPGEWGADIVVGSAQRFGVPM 300 (993)
T ss_pred cCceEEEEE-e-cCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcC--C-CCHhhccCcEEEECCCccccCC
Confidence 234655554 2 4466787877 99999999999999999 4333 21111 0 01123456888654 32 3
Q ss_pred CCCccccEEEEEcHHHHHhhhcc--CC------cccc------------cccCCCCC-CHHHHHHHHHHHH--HHhh---
Q psy14484 274 TGGYLPLSLVMTTDKIYNSIYYK--NN------INIF------------LHSHSYSG-NPLACCAALATLE--IFNK--- 327 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~~~~~~~~~--~~------~~~~------------~~~~t~~~-~~~~~~aa~~~l~--~~~~--- 327 (430)
++|+-..|++++++++...+... +. .+.+ ....|.+. ...++.+++++.. .+..
T Consensus 301 G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl 380 (993)
T PLN02414 301 GYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 380 (993)
T ss_pred CCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccH
Confidence 32223589999999876533210 00 0010 01122221 1123334443331 2222
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
.+..+++.+++.++.++|+.+ ....... ...-.+.+... + ..++.++|.++||.++.. ++.+|++++
T Consensus 381 ~~Ia~ri~~la~~l~~~L~~~-G~~~~~~--~~f~~vt~~~~-~--------~~~v~~~L~~~gI~l~~~~~~~lrvs~~ 448 (993)
T PLN02414 381 KTIAQRVHGLAGVFAAGLKKL-GFQVQSL--PFFDTVKVKCS-D--------ADAIADAAAKVGINLRVVDANTVTVSFD 448 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCccCCC--CCcCeEEEecC-C--------HHHHHHHHHHCCCeeEEecCCeEEEEee
Confidence 344577888888999888764 2222211 11112222222 1 257999999999988765 478999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIF 422 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~ 422 (430)
..+|++||+.++++|.
T Consensus 449 e~~T~edId~L~~~l~ 464 (993)
T PLN02414 449 ETTTLEDVDKLFKVFA 464 (993)
T ss_pred ccCCHHHHHHHHHHHc
Confidence 9999999999999996
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-09 Score=112.57 Aligned_cols=285 Identities=11% Similarity=0.058 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+...+++..++++++.+..++.+..++|.+.++++.+.+ +. ++ ++++|++.+..|... ...+. ...
T Consensus 121 eal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~-~~--~~--~~~~vlv~~~~hP~~-~~v~~--------t~a 186 (954)
T PRK05367 121 EALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR-VS--KS--KSNRFFVDDDVHPQT-LDVLR--------TRA 186 (954)
T ss_pred HHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh-hc--cC--CCCEEEEcCccCHHH-HHHHH--------HHH
Confidence 555678889999998888899999999999997665443 32 11 136777766555433 22111 011
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.....+++.++.+. |++ +++++++++. +.+..|.+.+ +++|.++|+++|
T Consensus 187 ~~~G~ev~~~~~~~----------------d~~---------~~~~~~vlvq--~p~~~G~i~d----~~~i~~~ah~~G 235 (954)
T PRK05367 187 EPLGIEVVVGDAAK----------------ALD---------HDDVFGVLLQ--YPGTSGEVRD----YTALIAAAHARG 235 (954)
T ss_pred HhCCCEEEEecCcc----------------CCC---------cccEEEEEEe--cCCCCeeecc----HHHHHHHHHHcC
Confidence 12233444554331 111 2356665443 4467787777 999999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceeeee--cc---cCCCccccEEEEEcHHHHHhhhcc--C------Ccccc-
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KG---ITGGYLPLSLVMTTDKIYNSIYYK--N------NINIF- 302 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~---l~gG~~~ig~~~~~~~~~~~~~~~--~------~~~~~- 302 (430)
+++++|..+...+.. . ..-.+..|+++.+ |. ++.|+--.|++++++++.+.+... + ..+.+
T Consensus 236 al~~vda~~~Al~~l-~----~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~ 310 (954)
T PRK05367 236 ALVAVAADLLALTLL-T----PPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALR 310 (954)
T ss_pred CEEEEEehhhhccCC-C----ChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccc
Confidence 999999855322111 0 1113346887654 42 333323488899999877665421 1 00000
Q ss_pred -----------cccCCCCCC-HHHHHHHHHHH--HHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE
Q psy14484 303 -----------LHSHSYSGN-PLACCAALATL--EIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365 (430)
Q Consensus 303 -----------~~~~t~~~~-~~~~~aa~~~l--~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~ 365 (430)
....|.+.. ..++.++.+.+ ..+.. .++.+++..+..++.++|+.. ....... .....+.
T Consensus 311 lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~~f~~~~ 387 (954)
T PRK05367 311 LALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHD--SFFDTLT 387 (954)
T ss_pred cccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC--CCCCeEE
Confidence 111222222 22233333332 33333 344567788888888888653 2222111 1011122
Q ss_pred EEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+... . . +.++.++|.++||.+... ++.+|++++.++|++||+.+++.|.
T Consensus 388 ~~~~-~----~---~~~i~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 388 VEVG-G----D---AAAVLARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EeCC-C----C---HHHHHHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence 2221 1 1 468999999999998665 5789999999999999999999996
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-09 Score=105.55 Aligned_cols=295 Identities=10% Similarity=0.023 Sum_probs=163.3
Q ss_pred HHHHhhcCCCC----CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhcc-CCCccchhhhhc
Q psy14484 84 EKLSSLTQYKL----GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV-TNIQSFKEIYTS 158 (430)
Q Consensus 84 ~~l~~~~~~~~----~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~-~~~~~~~~~~~~ 158 (430)
+...++++.+. .+|.. -||+.||.+++.++.. ++++|+..+..+-|+..-.... .+... .+.
T Consensus 201 era~~lF~~~~~~~gaNVQp-~SGs~AN~aV~~ALl~--------PGD~IL~ldl~~GGHlshg~~~~~g~~v---s~s- 267 (586)
T PLN02271 201 ERALAAFGLDSEKWGVNVQP-YSCTSANFAVYTGLLL--------PGDRIMGLDSPSGGHMSHGYYTPGGKKV---SGA- 267 (586)
T ss_pred HHHHHHhCCcccccccceee-ccHHHHHHHHHHHhcC--------CCCEEEEecCCCCCchhccccccccccc---ccc-
Confidence 44556775444 23333 3999999999988764 7899999988776664322111 00000 000
Q ss_pred cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCE
Q psy14484 159 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~ 238 (430)
...+..++++.+... ...|.+++++.... .++++|++.. .... ...+ +++++++|+++|++
T Consensus 268 -G~~~~~vpY~~d~~~---------g~IDyd~lek~a~~--~rPKLII~g~-Sayp--r~~D----~~~i~eIAdevGA~ 328 (586)
T PLN02271 268 -SIFFESLPYKVNPQT---------GYIDYDKLEEKALD--FRPKILICGG-SSYP--REWD----YARFRQIADKCGAV 328 (586)
T ss_pred -cceEEEEEccccccc---------CccCHHHHHHHhhh--cCCeEEEECc-hhcc--CcCC----HHHHHHHHHHcCCE
Confidence 111233443321100 01288999985543 5788999877 4333 2344 89999999999999
Q ss_pred EEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHH--------------------HHhhhcc
Q psy14484 239 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKI--------------------YNSIYYK 296 (430)
Q Consensus 239 li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~--------------------~~~~~~~ 296 (430)
|++|.+|. .|-.... .+...-...|+++++ |+|.|. +-|.++.++++ .+.+...
T Consensus 329 LmvD~AH~-aGLIa~g-~~~sP~~~aDvvt~TTHKtLrGP--rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~a 404 (586)
T PLN02271 329 LMCDMAHI-SGLVAAK-ECVNPFDYCDIVTSTTHKSLRGP--RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFA 404 (586)
T ss_pred EEEECccc-ccccccC-cCCCCCcCCcEEEeCCcccCCCC--CceEEEecccccccccCCccccccccccHHHHHHhhcc
Confidence 99999998 3332211 011111147888765 888773 34777777642 2222220
Q ss_pred CCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCC
Q psy14484 297 NNINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 297 ~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~ 373 (430)
-.+..++++.. ..+++...++.....++ +.+++.++++.|.+.|.+. +++.+..-. ...++.+++. .-.
T Consensus 405 --VfPglqgGphn---~~IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggT-dnHlvLvDl~-~~g 476 (586)
T PLN02271 405 --VFPSLQGGPHN---NHIAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGT-DNHLLLWDLT-TLG 476 (586)
T ss_pred --cCCccccChhH---HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCC-CcceeeecCc-ccC
Confidence 01112222221 12333334455444444 5566777888888888654 333333211 2344555654 311
Q ss_pred ccchhHHHHHHHHHHHCCcEEee----c------CCEEEEeCCCC----CCHHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALKNELLLRP----I------GNTVYLMPPYI----LNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~Gv~~~~----~------~~~lR~~~~~~----~t~e~i~~~~~~l~~~l~ 426 (430)
. . .....+.|.+-||.+.. + +..||+..+.. ..++|+.++.+.|.+++.
T Consensus 477 ~--~--G~~ae~~Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 477 L--T--GKNYEKVCEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred C--C--HHHHHHHHHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 1 1 24555666677887753 1 24678765433 366888888887777765
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-09 Score=97.42 Aligned_cols=276 Identities=15% Similarity=0.101 Sum_probs=164.3
Q ss_pred EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCC
Q psy14484 97 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176 (430)
Q Consensus 97 v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
.+-|.|||-|+..+.+.+.... ++..|-+.+|++..|.......+- ++ ..+|.......
T Consensus 97 t~Qt~GGTGAL~~~A~fl~~~~------~~~~vwis~PtW~NH~~If~~aGl-------------~v--~~Y~Yyd~~~~ 155 (396)
T COG1448 97 TVQTLGGTGALRVAADFLARFF------PDATVWISDPTWPNHKAIFEAAGL-------------EV--ETYPYYDAETK 155 (396)
T ss_pred heecCCcchHHHHHHHHHHHhC------CCceEEeCCCCcHhHHHHHHhcCC-------------ce--eeeeccccccc
Confidence 4668899999999998777764 677788889999776443333221 11 12222111000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc
Q psy14484 177 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256 (430)
Q Consensus 177 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~ 256 (430)
..|++.+-..|++.+.+..+++..+ -+|++| ..|+.+..++|.++.++.+.+-++|=+|.||+. | ..
T Consensus 156 --------~~df~~mla~L~~a~~~~vvLLH~C-cHNPTG-~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~-G--le 222 (396)
T COG1448 156 --------GLDFDGMLADLKTAPEGSVVLLHGC-CHNPTG-IDPTEEQWQELADLIKERGLIPFFDIAYQGFAD-G--LE 222 (396)
T ss_pred --------cccHHHHHHHHHhCCCCCEEEEecC-CCCCCC-CCCCHHHHHHHHHHHHHcCCeeeeehhhhhhcc-c--hH
Confidence 0277787778887766667777778 889999 888999999999999999999999999999953 3 11
Q ss_pred cccC------CCCCcee---eeecccCC-CccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCH-HHHHHHHHHH
Q psy14484 257 CEHA------EIWPDFL---CLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNP-LACCAALATL 322 (430)
Q Consensus 257 ~~~~------~~~~d~~---~~sK~l~g-G~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~aa~~~l 322 (430)
-+.+ ...+.++ +|||.++- | -|+|++.. +++..+.+.. .-....-++|+.+| .++..+...|
T Consensus 223 eDa~~lR~~a~~~~~~lva~S~SKnfgLYg-ERVGa~~vva~~~~~a~~v~s---qlk~~iR~~ySnPP~~Ga~vva~IL 298 (396)
T COG1448 223 EDAYALRLFAEVGPELLVASSFSKNFGLYG-ERVGALSVVAEDAEEADRVLS---QLKAIIRTNYSNPPAHGAAVVATIL 298 (396)
T ss_pred HHHHHHHHHHHhCCcEEEEehhhhhhhhhh-hccceeEEEeCCHHHHHHHHH---HHHHHHHhccCCCchhhHHHHHHHh
Confidence 1111 1123333 58898875 5 68886433 3344433322 00111223444333 2333333334
Q ss_pred H--HHh------hcCHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcE
Q psy14484 323 E--IFN------KDNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL 393 (430)
Q Consensus 323 ~--~~~------~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~ 393 (430)
+ .+. -+..++++.++++.|.+.|+....-..+..+ ...|+|...-+. .+++.+--.+.||+
T Consensus 299 ~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls----------~~QV~rLree~~IY 368 (396)
T COG1448 299 NNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLS----------PEQVDRLREEFGIY 368 (396)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCC----------HHHHHHHHHhccEE
Confidence 2 111 1234566777777777777664111112222 334443322121 13444444466999
Q ss_pred EeecCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 394 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 394 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
....| |++++ ..++..|+.+.++|.++
T Consensus 369 ~v~sG---Ri~va-Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 369 LVASG---RINVA-GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred EecCC---eeeec-cCChhhHHHHHHHHHhh
Confidence 87666 78766 67888999999988765
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.1e-10 Score=105.59 Aligned_cols=234 Identities=15% Similarity=0.125 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCCe-EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 75 THKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~-v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
+.....+.++..++.+ +.++ .+++||.|.+|.+++.+++. ++++| .++...|-+...++.+++...
T Consensus 64 p~G~I~eAe~~aA~~f--GAd~t~flvnGsT~g~~a~i~a~~~--------~gd~V-Lv~RN~HkSv~~alil~ga~P-- 130 (417)
T PF01276_consen 64 PEGIIKEAEELAARAF--GADKTFFLVNGSTSGNQAMIMALCR--------PGDKV-LVDRNCHKSVYNALILSGAIP-- 130 (417)
T ss_dssp TBTHHHHHHHHHHHHH--TESEEEEESSHHHHHHHHHHHHHTT--------TTCEE-EEETT--HHHHHHHHHHTEEE--
T ss_pred CccHHHHHHHHHHHhc--CCCeEEEEecCchHHHHHHHHHhcC--------CCCEE-EEcCCcHHHHHHHHHHcCCeE--
Confidence 4456678888888899 4454 55567888888888887775 45554 457888888766666555221
Q ss_pred hhhhccCCCeeEeCC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE---EEEEccccccCCCcccCChHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA---AIIIEPLVQCAGGMIMYDSIYLKLVR 229 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~---~vi~ep~v~~~~G~~~~~~~~l~~l~ 229 (430)
++++. .+.+....+.+.+++ +.+.++++++++++..+ ++++.| +=.|.... +++|.
T Consensus 131 ----------vyi~p~~~~~gi~~~i~~~~~---~~~~i~~~l~~~p~~k~~~~vvlt~P---TY~Gv~~d----i~~I~ 190 (417)
T PF01276_consen 131 ----------VYIPPEDNEYGIIGGISPDEF---NEEDIEEALKEHPDAKAPRLVVLTSP---TYYGVCYD----IKEIA 190 (417)
T ss_dssp ----------EEEEEEE-TTS-BEEB-GGGG---SHHHHHHHHHHCTTCHCESEEEEESS----TTSEEE-----HHHHH
T ss_pred ----------EEecCCccccCCccCCChhhh---hHHHHHHHHHhCccccCceEEEEeCC---CCCeEEEC----HHHHH
Confidence 11111 111111111111121 34889999999876544 677766 33475655 99999
Q ss_pred HHHHhcCCEEEEeccccCCCCcccccccccCCCCCc-------eeeee--cccCCCccccEEEEEcHHH-H--HhhhccC
Q psy14484 230 EICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD-------FLCLS--KGITGGYLPLSLVMTTDKI-Y--NSIYYKN 297 (430)
Q Consensus 230 ~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d-------~~~~s--K~l~gG~~~ig~~~~~~~~-~--~~~~~~~ 297 (430)
++|++++++|+|||++.+...-. .+.........| +++-| |.+++= ..-+++-.+.+. + +.+..
T Consensus 191 ~~~h~~~~~llvDEAhGah~~F~-~lp~~a~~~gad~~~~~~~~vvqS~HKtL~al-tQts~lh~~~~~~v~~~~~~~-- 266 (417)
T PF01276_consen 191 EICHKHGIPLLVDEAHGAHFGFH-PLPRSALALGADRPNDPGIIVVQSTHKTLPAL-TQTSMLHVKGDRIVDHERVNE-- 266 (417)
T ss_dssp HHHCCTECEEEEE-TT-TTGGCS-GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHH--
T ss_pred HHhcccCCEEEEEccccccccCC-CCccchhhccCccccccceeeeechhhccccc-ccceEEEecCCCcccHHHHHH--
Confidence 99999999999999987431111 222233445566 77777 776652 234566655442 1 22221
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHch
Q psy14484 298 NINIFLHSHSYSGNPLACCAALATLEIF---NKDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 298 ~~~~~~~~~t~~~~~~~~~aa~~~l~~~---~~~~~~~~~~~~~~~l~~~l~~l 348 (430)
.+..-.|.+++.+-++..-.+.+++ +...+.++..+..+.+++.++++
T Consensus 267 ---~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~ 317 (417)
T PF01276_consen 267 ---ALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL 317 (417)
T ss_dssp ---HHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 1112233344544444333344444 23567788888899999999544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.7e-09 Score=108.01 Aligned_cols=305 Identities=9% Similarity=0.038 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
....+.++..++.++++ ...+++||.|.+|.+++..++. ++++|+ ++...|-+..-++.+++...
T Consensus 205 G~I~eAq~~aA~~fgA~-~t~FlvNGST~gn~a~i~a~~~--------~gd~Vl-v~RN~HKSv~~al~L~ga~P----- 269 (755)
T PRK15029 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--------DNDVVV-VDRNCHKSIEQGLILTGAKP----- 269 (755)
T ss_pred cHHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHHhcC--------CCCEEE-eecccHHHHHHHHHHcCCeE-----
Confidence 34456667777788522 3566677888888877777764 445544 67888988776666665321
Q ss_pred hccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe--------EEEEEccccccCCCcccCChHHHHH
Q psy14484 157 TSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKI--------AAIIIEPLVQCAGGMIMYDSIYLKL 227 (430)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~--------~~vi~ep~v~~~~G~~~~~~~~l~~ 227 (430)
+++... ..+....+.+...+ +.+.+++++++++... +++++.| +=.|.... +++
T Consensus 270 -------vyl~P~~~~~Gi~~~i~~~~~---~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P---TY~Gv~~d----i~~ 332 (755)
T PRK15029 270 -------VYMVPSRNRYGIIGPIYPQEM---QPETLQKKISESPLTKDKAGQKPSYCVVTNC---TYDGVCYN----AKE 332 (755)
T ss_pred -------EEecccccccCCccCCCcccc---CHHHHHHHHHhCchhhhccccCceEEEEECC---CCcceeeC----HHH
Confidence 111100 11111111111111 3678888998875433 4666666 22354444 999
Q ss_pred HHHHHHhcCCEEEEeccccCCCCccccccc-ccC-----C-CCCc-eeeee--cccCCCccccEEEEEcH--------HH
Q psy14484 228 VREICNNYNIHLIADEIAVGCGRTGKFFAC-EHA-----E-IWPD-FLCLS--KGITGGYLPLSLVMTTD--------KI 289 (430)
Q Consensus 228 l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~-----~-~~~d-~~~~s--K~l~gG~~~ig~~~~~~--------~~ 289 (430)
|.++|++++++|++||++.+...-.+.+.- ... . ..+| +++-| |.+++= ..-+++-.+. .+
T Consensus 333 I~~~~h~~~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-TQaS~LHv~~~~~~id~~r~ 411 (755)
T PRK15029 333 AQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-SQASYIHVREGRGAINFSRF 411 (755)
T ss_pred HHHHHHhcCCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccch-hhhhhheeCCCccccCHHHH
Confidence 999999999999999998743221222221 111 1 3477 66666 766541 1123333322 22
Q ss_pred HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhc-C------------CC
Q psy14484 290 YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLIT-H------------PK 353 (430)
Q Consensus 290 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~-~------------~~ 353 (430)
.+.+.. +. |.+++-+-++..-.+-.+++ ...+.++..+....+++.+.++.. + |.
T Consensus 412 ~~~l~~--------~q-STSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 482 (755)
T PRK15029 412 NQAYMM--------HA-TTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKE 482 (755)
T ss_pred HHHHHH--------Hc-CCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCcc
Confidence 222222 32 33444333332223333343 234667777788888888876522 0 00
Q ss_pred --------------------------eeeEe------e-----------cceEEEEEEeecCCccchh------HHHHHH
Q psy14484 354 --------------------------IINFR------Q-----------KGMIWAFDVIIEDPEQIET------FSKKFF 384 (430)
Q Consensus 354 --------------------------~~~~~------~-----------~g~~~~~~~~~~~~~~~~~------~a~~~~ 384 (430)
..... + .-+=+.+... .-.. +.. -+..+.
T Consensus 483 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~-~~g~-sG~~~~~gip~~~l~ 560 (755)
T PRK15029 483 VVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAP-GMGE-DGELEETGVPAALVT 560 (755)
T ss_pred ccccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcC-CCCC-CCcccccCCcHHHHH
Confidence 00000 0 0000111111 0000 000 034788
Q ss_pred HHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 385 VAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 385 ~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.|.++||.+.-.+ ..+-+.++...|++++++++++|.+.-
T Consensus 561 ~~L~~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~~~ 602 (755)
T PRK15029 561 AWLGRHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFK 602 (755)
T ss_pred HHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 88988899988765 567777788999999999999998663
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=96.60 Aligned_cols=240 Identities=19% Similarity=0.153 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhhcCCC-------CCeEEEcCCchHHHHHHHHHHHHhhh----hcCCC-CCcEEEEEcCCCCCcchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYK-------LGHCFYGSDGASAVEVALKMSFHYWY----NKGFL-NKKKFICLQNSYHGETLGAL 144 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~-------~~~v~~~~sgteA~~~al~~~~~~~~----~~g~~-~~~~vl~~~~~yhg~~~~~~ 144 (430)
....++.++++++++.+ ...-++|+|||+||..|+.++|.... .+|.. ..+.++..+..-|-+..-+.
T Consensus 79 ~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa 158 (373)
T PF00282_consen 79 EIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAA 158 (373)
T ss_dssp HHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHH
T ss_pred cchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhc
Confidence 55567778888888643 13578999999999999999987543 22221 12345555555564322222
Q ss_pred ccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCC-eEEEEEccccccCCCcccCC
Q psy14484 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN--HNK-IAAIIIEPLVQCAGGMIMYD 221 (430)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~-~~~vi~ep~v~~~~G~~~~~ 221 (430)
..+..+.+.++...+.+. |+++|++++.+. .+. +.+|+..- ....+|.+-|
T Consensus 159 ------------~~lGlg~~~I~~~~~~~m------------d~~~L~~~l~~~~~~g~~p~~vvat~-Gtt~~Ga~D~- 212 (373)
T PF00282_consen 159 ------------RILGLGVRKIPTDEDGRM------------DIEALEKALEKDIANGKTPFAVVATA-GTTNTGAIDP- 212 (373)
T ss_dssp ------------HHTTSEEEEE-BBTTSSB-------------HHHHHHHHHHHHHTTEEEEEEEEEB-S-TTTSBB-S-
T ss_pred ------------ceeeeEEEEecCCcchhh------------hHHHhhhhhcccccccccceeeeccC-CCcccccccC-
Confidence 223334566766655554 889999988765 223 44666666 7777888888
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH-HH-Hhhhcc
Q psy14484 222 SIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK-IY-NSIYYK 296 (430)
Q Consensus 222 ~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~-~~-~~~~~~ 296 (430)
+++|.++|+++++++|||.++.|....-+..-.-..++ ..|=++++ |.++.. ++.|+++.+.+ .. ..+...
T Consensus 213 ---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P-~~~~~~l~r~~~~l~~~~~~~ 288 (373)
T PF00282_consen 213 ---LEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVP-YGCGVLLVRDKSDLRDAFSIN 288 (373)
T ss_dssp ---HHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-S-SS-EEEEESSGGGHHGGGEEE
T ss_pred ---HHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCC-ccceeEEeecccchHHHhccC
Confidence 99999999999999999999887321111110111222 13545444 777666 58899988764 22 222110
Q ss_pred CCcccc------------cccCCCCCC-HHHHHHHHHHHHHHhhcCHHHHH---HHHHHHHHHHHHch
Q psy14484 297 NNINIF------------LHSHSYSGN-PLACCAALATLEIFNKDNILQRI---SQDMKKITKALTSL 348 (430)
Q Consensus 297 ~~~~~~------------~~~~t~~~~-~~~~~aa~~~l~~~~~~~~~~~~---~~~~~~l~~~l~~l 348 (430)
...+ ....|..++ .......+.+|+.+..+.+.+++ .+++++|.+.|++.
T Consensus 289 --~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~ 354 (373)
T PF00282_consen 289 --ADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKD 354 (373)
T ss_dssp --ETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred --hhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000 011222322 34445666777766666665554 55777777777765
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-08 Score=94.37 Aligned_cols=312 Identities=8% Similarity=0.002 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHhhcccc--------ccCCCCCHHHHHHHHHHHhhcCCCC-CeEEEcC-CchHHHHHHHHHHHHhhhhc
Q psy14484 52 NSYINKALKNQLNKLEHV--------MLSNLTHKPVIKLSEKLSSLTQYKL-GHCFYGS-DGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l~~~~~~~~-~~v~~~~-sgteA~~~al~~~~~~~~~~ 121 (430)
+++|.+++++.+.+.... ++.....+...+..+.|.+++..+. -+|+|.+ |||.++++++..+..
T Consensus 16 p~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll~----- 90 (364)
T PRK12462 16 PDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFSR----- 90 (364)
T ss_pred CHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcCC-----
Confidence 789999999877653321 1111222556677788888886421 2555555 699999999887764
Q ss_pred CCCCCcEEE-EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC--CCCCC-CCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 122 GFLNKKKFI-CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDSR-NINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 122 g~~~~~~vl-~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
++++++ ....++.|....-.+. .+ . ++..+. .+..+ ..+ +++++ +.
T Consensus 91 ---~g~~~~~~~~tG~fg~r~~~ea~--------~~---g-~v~~~~~~~~~~~~~~p-----------~~~~~----~~ 140 (364)
T PRK12462 91 ---PGAAAPEYVTTGYWSRKAIGEAS--------RV---A-AMRVVWDGAASGYRTLP-----------SLAEL----DW 140 (364)
T ss_pred ---CCCcEEEEEeCCHHHHHHHHHHH--------hc---C-CceEecCcCCCCCCcCC-----------CHHHh----cc
Confidence 344344 4444444432111110 00 0 111111 00000 000 33332 21
Q ss_pred CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCC
Q psy14484 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITG 275 (430)
Q Consensus 198 ~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~g 275 (430)
..+.+.|.+.+ ....+|+..+ ++.+.+++++|+|-+-+ ++ +..+.++.+ |++..| |+++.
T Consensus 141 -~~d~~~v~~t~-NETstGv~~~---------~~~~~~~~llvvD~sS~-~~--s~pid~~~~----dvi~agsQKnlgP 202 (364)
T PRK12462 141 -DARAPFRHYVS-NETVEGLQFP---------DAAGLPDSPLIADMSSD-FM--SRPFDVEAY----GMVYAHAQKNLGP 202 (364)
T ss_pred -CCCCcEEEEcc-CCCCceEecC---------cccccCCCeEEEEcCch-hh--CCCCChHHc----cEEEeeccccCCC
Confidence 23466677766 6667786665 23334689999998754 42 122333333 767655 99974
Q ss_pred CccccEEEEEcHHHHHhhhccCCcccc-------cccCCC-CCCHHHHHHHHHHHHHHhhc--C---HHHHHHHHHHHHH
Q psy14484 276 GYLPLSLVMTTDKIYNSIYYKNNINIF-------LHSHSY-SGNPLACCAALATLEIFNKD--N---ILQRISQDMKKIT 342 (430)
Q Consensus 276 G~~~ig~~~~~~~~~~~~~~~~~~~~~-------~~~~t~-~~~~~~~~aa~~~l~~~~~~--~---~~~~~~~~~~~l~ 342 (430)
..++.++.+++.++..... .+ .+ ...+++ +++.....+...+|+.+.++ + ..++-++.++.++
T Consensus 203 --~Gltvvivs~~al~~~~~~-~p-~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly 278 (364)
T PRK12462 203 --AGVTVAIIRRALLERVPDT-LP-PMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLY 278 (364)
T ss_pred --CceEEEEECHHHHhhcccc-CC-chhhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 4588999999887665431 00 11 022344 44556777888888887655 4 4456677788888
Q ss_pred HHHHchh-cCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHH
Q psy14484 343 KALTSLI-THPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 343 ~~l~~l~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~ 417 (430)
+.++++. -+........+..+ +.|.+. + ..+..+|.+.+.++|+..-.++ +.+|.++=-.++.|.++.+
T Consensus 279 ~~id~~~~~~~~~~~~~~RS~mnv~f~~~-~-----~~l~~~f~~~a~~~gl~~lkGhr~vgg~Ras~yna~~~e~v~~L 352 (364)
T PRK12462 279 ATLDALNEVIDCHAHRAARSTMNVAFRFR-Q-----PRLDTLFKEQSTEAGFCGLSGHRSIGGIRASLYNAVSEQAVSRL 352 (364)
T ss_pred HHHHhCCCcccCCCChhhcCcceEEEEcC-C-----HHHHHHHHHHHHHCCCccccCCcccCceEEEcCCCCCHHHHHHH
Confidence 8887763 22222222223333 233333 2 2234689999999999876553 5689988888899999999
Q ss_pred HHHHHHHHH
Q psy14484 418 TSAIFQTFN 426 (430)
Q Consensus 418 ~~~l~~~l~ 426 (430)
++-+++.-+
T Consensus 353 ~~fm~~f~~ 361 (364)
T PRK12462 353 CAFLKDFAI 361 (364)
T ss_pred HHHHHHHHH
Confidence 988877643
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-08 Score=88.35 Aligned_cols=319 Identities=15% Similarity=0.140 Sum_probs=181.0
Q ss_pred CCCHHHHHHHHHHHh-hccccc---cCCCCC---HHHHHHH-HHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 50 HSNSYINKALKNQLN-KLEHVM---LSNLTH---KPVIKLS-EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~-~~~~~~---~~~~~~---~~~~~l~-~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
+.+|.|++|.-..+. ++.... +.++.. +..+.++ ++..++++++..+|-. .||++||.++..++..
T Consensus 37 ~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQP-hSGs~AN~av~~All~----- 110 (413)
T COG0112 37 FTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQP-HSGSQANQAVYLALLQ----- 110 (413)
T ss_pred cCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCC-CCchHHHHHHHHHHcC-----
Confidence 357899998877664 333221 112222 3333333 5566778554444442 5999999999988876
Q ss_pred CCCCCcEEEEEcCCCCCcchhh--hccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 199 (430)
++++|+..+-..-||..-. ...++ .....++++-+.... .-|.|++++...++
T Consensus 111 ---pGDtimgm~l~~GGHltHg~~v~~sG------------~~~~~v~Y~vd~et~---------~IDyD~~~k~a~e~- 165 (413)
T COG0112 111 ---PGDTIMGLDLSHGGHLTHGSPVNFSG------------KLFNVVSYGVDPETG---------LIDYDEVEKLAKEV- 165 (413)
T ss_pred ---CCCeEecccCCCCCcccCCCCCCccc------------eeEEeEecccccccC---------ccCHHHHHHHHHHh-
Confidence 7889998877666663221 11122 112334443221100 12889999999875
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCC
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGG 276 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG 276 (430)
+++++++= .+..--..+ +++++++|++.|++|++|-+|- |+--.|. +. .... ..|++|-+ |.|-|
T Consensus 166 -kPK~ii~G---~SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~-~p-~P~~-~AdvVTtTTHKTlrG- 233 (413)
T COG0112 166 -KPKLIIAG---GSAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGV-HP-NPLP-HADVVTTTTHKTLRG- 233 (413)
T ss_pred -CCCEEEEC---ccccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhccc-CC-CCCC-ccceEeCCcccCCCC-
Confidence 56667762 233332333 8999999999999999998875 4422221 11 1111 36888655 88877
Q ss_pred ccccEEEEEcH-HHHHhhhccCCcccccccCCCCCCHH--HHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhc
Q psy14484 277 YLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPL--ACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 277 ~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~ 350 (430)
-+-|.++++. ++.+.+.. ....+. .++|+ .+++-..++....+++ +.+++.++++.|.+.|.+. .
T Consensus 234 -PrGG~Il~~~eel~kkin~------aVFPg~-qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G 304 (413)
T COG0112 234 -PRGGIILTNDEELAKKINS------AVFPGL-QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER-G 304 (413)
T ss_pred -CCceEEEeccHHHHHHhhh------hcCCcc-CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 4678888884 77777765 112222 23333 2332223344333444 4566777888888888764 3
Q ss_pred CCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c-------CCEEEEeCCCC----CCHHHHH
Q psy14484 351 HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I-------GNTVYLMPPYI----LNKNEIQ 415 (430)
Q Consensus 351 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~-------~~~lR~~~~~~----~t~e~i~ 415 (430)
+..+..-. ...++.+++. +... . .......|.+-||.+.. . ...||+..+.. +.++|..
T Consensus 305 ~~vvsGgT-dnHl~lVDl~-~~~~-~---Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~ 378 (413)
T COG0112 305 FKVVSGGT-DNHLVLVDLR-SKGL-T---GKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEME 378 (413)
T ss_pred CeEecCCc-cceEEEEEcc-cCCC-C---HHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHH
Confidence 33332111 2234445554 3211 1 13444555566887752 1 24688765543 3678888
Q ss_pred HHHHHHHHHHH
Q psy14484 416 HMTSAIFQTFN 426 (430)
Q Consensus 416 ~~~~~l~~~l~ 426 (430)
++.+.|.+++.
T Consensus 379 ~Ia~~I~~vl~ 389 (413)
T COG0112 379 EIADLIADVLD 389 (413)
T ss_pred HHHHHHHHHHh
Confidence 88888877765
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-09 Score=100.55 Aligned_cols=319 Identities=15% Similarity=0.107 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHhh-cccc---ccCCCCCHH---HHH-HHHHHHhhcCCCCC--eEEE-cCCchHHHHHHHHHHHHhhh
Q psy14484 51 SNSYINKALKNQLNK-LEHV---MLSNLTHKP---VIK-LSEKLSSLTQYKLG--HCFY-GSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~~~---~~~~~~~~~---~~~-l~~~l~~~~~~~~~--~v~~-~~sgteA~~~al~~~~~~~~ 119 (430)
.+|.+++++...+.. +... .+.....+. .+. ..+...+++++.++ .+-+ ..||+.||.+++.++..
T Consensus 32 ~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl~--- 108 (399)
T PF00464_consen 32 MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALLK--- 108 (399)
T ss_dssp --HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT----
T ss_pred cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHHh---
Confidence 467777776654432 2211 111222222 233 33556677865544 2322 24999999999988876
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
++++|+.++...-||..-........ ........+....+++ +.... |.+++++.+.++
T Consensus 109 -----pGD~Im~l~l~~GGHlshg~~~~~~~---~~~~~~~~~~~~y~~d~~~~~I------------D~d~l~~~a~~~ 168 (399)
T PF00464_consen 109 -----PGDTIMGLSLPHGGHLSHGSSVNFKK---ISASGLYFESVPYPVDPDTGLI------------DYDELEKLAKEH 168 (399)
T ss_dssp -----TT-EEEEEEGGGT--GGGT-TTSHSB---SSHHHHHSEEEEEEB-TTTSSB-------------HHHHHHHHHHH
T ss_pred -----hcCcEEecChhhcccccccccccccc---cccccceEEEEeeeeecCCCeE------------CHHHHHHHHhhc
Confidence 78899998876655532111111000 0000011111222222 22222 899999999875
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCC
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITG 275 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~g 275 (430)
++++|++-. +.. |-+--+++++++|++.|++|++|-+|. |+-- |..+. +.+. ..|+++.| |.|.|
T Consensus 169 --kPklIi~G~---S~y----~~~~d~~~~reIad~vga~l~~D~sH~~GLIa-~g~~~-~P~~-~ADvvt~sThKtl~G 236 (399)
T PF00464_consen 169 --KPKLIICGA---SSY----PRPIDFKRFREIADEVGAYLMADISHIAGLIA-GGLFP-NPFP-YADVVTGSTHKTLRG 236 (399)
T ss_dssp ----SEEEEE----SST----SS---HHHHHHHHHHTT-EEEEE-TTTHHHHH-TTSS---GCC-TSSEEEEESSGGG-S
T ss_pred --CCCEEEECc---hhc----cCccCHHHHHHHHHhcCcEEEeccccccccee-hheec-Cccc-cceEEEeeccccccc
Confidence 567788765 221 222227999999999999999998876 4311 11111 1122 27999877 88887
Q ss_pred CccccEEEEEc--------------HHHHHhhhccCCcccccccCCCCCCHH-HHHHHHHHHHHHhh---cCHHHHHHHH
Q psy14484 276 GYLPLSLVMTT--------------DKIYNSIYYKNNINIFLHSHSYSGNPL-ACCAALATLEIFNK---DNILQRISQD 337 (430)
Q Consensus 276 G~~~ig~~~~~--------------~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~~~~~---~~~~~~~~~~ 337 (430)
-+-|.++++ +++.+.+.. ....+..++... ..++-..+|..... .++.+++.++
T Consensus 237 --PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~------avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~N 308 (399)
T PF00464_consen 237 --PRGGIILTNKGSKNVDKKGKEIDEELAEKIDS------AVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKN 308 (399)
T ss_dssp --SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHH------HHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred --cCceEEEEcCCccccCCcccccHHHHHHHhcc------ccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 467889999 677777665 111122222222 22222233443322 3566777888
Q ss_pred HHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------CCEEEEeCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTVYLMPPY 407 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------~~~lR~~~~~ 407 (430)
++.|.+.|.+. ++..+..- -...++.+++. .... . ..+..+.|.+.||.+... +..||+..+.
T Consensus 309 Ak~La~~L~~~-G~~v~~gg-Td~H~vlvd~~-~~~~--~--g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~ 381 (399)
T PF00464_consen 309 AKALAEALQER-GFKVVTGG-TDNHQVLVDLR-SFGI--D--GKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPA 381 (399)
T ss_dssp HHHHHHHHHHT-T-EEGGGS--SSSEEEEEGG-GGTS-----HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHH
T ss_pred HHHHHHHHhhC-CcEEEECC-CCCCeEEEEec-cccc--c--hHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHH
Confidence 88888888765 33322211 23345556654 3111 1 246777888899998642 2579987543
Q ss_pred C----CCHHHHHHHHH
Q psy14484 408 I----LNKNEIQHMTS 419 (430)
Q Consensus 408 ~----~t~e~i~~~~~ 419 (430)
. ..++|+.++.+
T Consensus 382 lT~rG~~e~dm~~iA~ 397 (399)
T PF00464_consen 382 LTRRGMKEEDMKEIAE 397 (399)
T ss_dssp HHHTT--HHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHh
Confidence 2 25566555443
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-07 Score=94.32 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhh-----hcCCC------------------------
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY-----NKGFL------------------------ 124 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~-----~~g~~------------------------ 124 (430)
..+....++.++|+++++.+...-.||+|||+||..|+.+||.... ....+
T Consensus 120 ~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~ 199 (608)
T TIGR03811 120 ATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLE 199 (608)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccccccccc
Confidence 3446777888999999975545567999999999999999987420 00000
Q ss_pred --------------------CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCC---CeeEeCCCCCCCCCCCCChh
Q psy14484 125 --------------------NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN---KTYIITTPDSRNINKGNSAN 181 (430)
Q Consensus 125 --------------------~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 181 (430)
.+..++..+..-|-+ +.+....+.. .++.+|.+..++.
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS------------~~KAa~ilGlG~~~vv~VpvD~~~rm------- 260 (608)
T TIGR03811 200 SAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYS------------WLKAADIIGIGLDQVIPVPVDSNYRM------- 260 (608)
T ss_pred ccccchhhhhhhccccccccccceEEEECCCccHH------------HHHHHHHcCCCcccEEEeecCCCCcC-------
Confidence 000012222222322 1222222222 3456666665555
Q ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHH---HhcCC--EEEEeccccCCCCc--
Q psy14484 182 EIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC---NNYNI--HLIADEIAVGCGRT-- 251 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~---~~~gi--~li~DEv~~g~g~~-- 251 (430)
|+++|+++|++. ...+.+|+..- ...+.|.+-| +++|.++| +++|+ ++|||.++.|+.+.
T Consensus 261 -----d~~~L~~~I~~~~~~g~p~~~VVata-GTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~ 330 (608)
T TIGR03811 261 -----DINELEKIIRKLAAEKTPILGVVGVV-GSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIF 330 (608)
T ss_pred -----CHHHHHHHHHHHHhcCCCeEEEEEEc-CCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhh
Confidence 899999998753 22455666666 7777888888 99998888 77898 69999999986421
Q ss_pred -c---cccc-------------c-------------ccCCC-CCceeeee--cccCCCccccEEEEEcHH-HHHhhhcc-
Q psy14484 252 -G---KFFA-------------C-------------EHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK-IYNSIYYK- 296 (430)
Q Consensus 252 -g---~~~~-------------~-------------~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~-~~~~~~~~- 296 (430)
. .... + ...++ ..|=+|+. |.+.-. ++.|+++.+.. +.+.+...
T Consensus 331 ~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~P-y~~G~ll~Rd~~~~~~~~~~a 409 (608)
T TIGR03811 331 LDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIP-YSAGGIVIQDIRMRDVISYFA 409 (608)
T ss_pred ccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccC-CCeEEEEEeCHHHHHHHhcCc
Confidence 0 0000 0 00122 24555554 655444 57888888754 33333220
Q ss_pred ------CCccc-ccccCCCCCCH--HHHHHHHHHHHHH--hhc---CHHHHHHHHHHHHHHHHHch
Q psy14484 297 ------NNINI-FLHSHSYSGNP--LACCAALATLEIF--NKD---NILQRISQDMKKITKALTSL 348 (430)
Q Consensus 297 ------~~~~~-~~~~~t~~~~~--~~~~aa~~~l~~~--~~~---~~~~~~~~~~~~l~~~l~~l 348 (430)
+...+ .....+..++. ...++.+.+++.+ ..+ .+..+..++++++.+.|++.
T Consensus 410 ~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~ 475 (608)
T TIGR03811 410 TYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL 475 (608)
T ss_pred chhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00000 00011222232 3345566677765 333 34455666788888888763
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-08 Score=95.59 Aligned_cols=312 Identities=16% Similarity=0.176 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
....+|.+.|++.. +.|.+.|-+ ||.+.-.+.++.+|.|...+|. +...|...+-+.||.......+.+.
T Consensus 582 ~lf~~Le~~Lc~iT--G~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge-~hRnvClIPvSAHGTNPASA~Magm------ 652 (1001)
T KOG2040|consen 582 QLFTELEKDLCEIT--GFDSFSLQPNSGAQGEYAGLRVIRAYLESKGE-GHRNVCLIPVSAHGTNPASAAMAGM------ 652 (1001)
T ss_pred HHHHHHHHHhheee--cccceeecCCCCcccchhhHHHHHHHHHhccC-CcceeEEEeecccCCChhhHHhcCC------
Confidence 55668888888888 777777765 9999999999999999988887 5566777778999987666665542
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
.++.+........ |+.+|+....+|.++.+++++.- + +..|..-+. ++++.++.++|
T Consensus 653 ------kvvpV~~~~~G~i------------d~~dLk~kaekh~~~Laa~MvTY-P-ST~GvfE~~---i~d~cd~iHeh 709 (1001)
T KOG2040|consen 653 ------KVVPVGCDANGNI------------DMVDLKAKAEKHKDNLAALMVTY-P-STHGVFEEG---IDDICDIIHEH 709 (1001)
T ss_pred ------EEEEeeccCCCCc------------cHHHHHHHHHHhhhhhheeEEec-c-ccccccccc---HHHHHHHHHhc
Confidence 2233333332222 88899999998888888888764 3 444545443 89999999999
Q ss_pred CCEEEEecc----ccCCCCcccccc-cccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC--------Ccccc
Q psy14484 236 NIHLIADEI----AVGCGRTGKFFA-CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN--------NINIF 302 (430)
Q Consensus 236 gi~li~DEv----~~g~g~~g~~~~-~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~--------~~~~~ 302 (430)
|.-+..|-+ |.|+.+.|..++ ..++++. -||.=.-|||+-.+|.+.+++.+...+-..+ ...++
T Consensus 710 GGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~ 786 (1001)
T KOG2040|consen 710 GGQVYLDGANMNAQVGLCRPGDIGADVCHLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPV 786 (1001)
T ss_pred CCEEEecCCCccceecccCCccccccceeeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCc
Confidence 999999954 557766664322 2222221 1344344555456788888877765443210 00000
Q ss_pred c-ccCCCCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHHHchhcCCCeeeEeecceEEE----EEEeecCCc
Q psy14484 303 L-HSHSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKALTSLITHPKIINFRQKGMIWA----FDVIIEDPE 374 (430)
Q Consensus 303 ~-~~~t~~~~~~~~~aa~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~----~~~~~~~~~ 374 (430)
. .++.-.++...+...++.++++...++.+ ..--++.|+.++|+. .++.+. ....| +.+ +++. +-+.
T Consensus 787 gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~--hYkil~-~~~~~-~vaHEFIlD~r-~fK~ 861 (1001)
T KOG2040|consen 787 GSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLES--HYKILF-RGENG-LVAHEFILDLR-PFKK 861 (1001)
T ss_pred cceeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhh--ccceeE-ecCCc-ceeeeeeeech-hhcc
Confidence 0 01111233444556778888887655543 334477888888875 333322 11122 323 2332 2111
Q ss_pred cchhHHHHHHHHHHHCCcEEe----ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 375 QIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~----~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+..--+..++++|...|+... |-.+++.+-|.-.-+++|+|++++++-.+-+++
T Consensus 862 ~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIreEI 919 (1001)
T KOG2040|consen 862 TAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIREEI 919 (1001)
T ss_pred ccCCcHHHHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHHHH
Confidence 110115678999999988643 335899999998889999999999987765543
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-08 Score=99.69 Aligned_cols=303 Identities=11% Similarity=0.030 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhh-hccCC-Cccchh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA-LAVTN-IQSFKE 154 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~-~~~~~-~~~~~~ 154 (430)
....+.++..++.++++ ...+++||.|.+|.+++.+++. ++++ |.++...|-+..-+ +.+++ .|.|-
T Consensus 174 G~i~eAq~~AA~~fgAd-~tyFlvNGTS~gn~a~i~a~~~--------~Gd~-VLvdRN~HKSv~hgaLiLsGa~PVYl- 242 (720)
T PRK13578 174 GAAKDAQKHAAKVFNAD-KTYFVLNGTSASNKVVTNALLT--------PGDL-VLFDRNNHKSNHHGALIQAGATPVYL- 242 (720)
T ss_pred hHHHHHHHHHHHHhCCC-ceEEEeCChhHHHHHHHHHhcC--------CCCE-EEeecccHHHHHHHHHHHcCCeEEEe-
Confidence 34456667777788422 3456677888888888887764 4454 45688888876543 44444 22221
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CC-------CeEEEEEccccccCCCcccCChHHHH
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN-HN-------KIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~-------~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
.|.-+.+....+.+.+++ +.+.++++|+++ ++ -.++|++.| +=.|.... ++
T Consensus 243 -----------~P~~n~~Gi~g~I~~~~~---~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p---TYdG~~yd----i~ 301 (720)
T PRK13578 243 -----------ETARNPFGFIGGIDAHCF---DEEYLREQIREVAPERADEARPFRLAVIQLG---TYDGTIYN----AR 301 (720)
T ss_pred -----------eccccccCCcCCCChHHc---cHHHHHHHHHhcCccccccccCceEEEEECC---CCcceeec----HH
Confidence 111111222223333333 356788888876 32 134555555 22364444 88
Q ss_pred HHHHH-HHhcCCEEEEeccccCCCCcccc---cccccCCCCCc----eeeee--cccCCCccccEEEEEcH---------
Q psy14484 227 LVREI-CNNYNIHLIADEIAVGCGRTGKF---FACEHAEIWPD----FLCLS--KGITGGYLPLSLVMTTD--------- 287 (430)
Q Consensus 227 ~l~~l-~~~~gi~li~DEv~~g~g~~g~~---~~~~~~~~~~d----~~~~s--K~l~gG~~~ig~~~~~~--------- 287 (430)
.|.+. |++++ +|++||++.+...-... +.-......+| +++-| |.+++= ..-+++-.+.
T Consensus 302 ~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~al-TQaS~LHvk~~~i~g~~~~ 379 (720)
T PRK13578 302 QVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGF-SQTSQIHKKDNHIKGQARY 379 (720)
T ss_pred HHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhh-hhHhhhhcCCccccccccc
Confidence 89888 68888 99999998754221111 11111234566 77666 765541 1123333322
Q ss_pred ----HHHHhhhccCCcccccccCCCCCCHHHHHHHHHH-HHHHh---hcCHHHHHHHHHHHHHHHH-HchhcCCCee--e
Q psy14484 288 ----KIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT-LEIFN---KDNILQRISQDMKKITKAL-TSLITHPKII--N 356 (430)
Q Consensus 288 ----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~-l~~~~---~~~~~~~~~~~~~~l~~~l-~~l~~~~~~~--~ 356 (430)
.+.+.+.. +.+|. ++-+- .|++.+ -.+++ ...+.+...+.+..+|+.| +.+..+..+. .
T Consensus 380 v~~~r~~~al~m--------~qSTS-PsY~L-mASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~ 449 (720)
T PRK13578 380 CPHKRLNNAFML--------HASTS-PFYPL-FAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPV 449 (720)
T ss_pred CCHHHHHHHHHH--------HcCCC-hHHHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccc
Confidence 22222322 33333 33222 233322 23332 2456677777888888877 4332221110 0
Q ss_pred Ee-----------------------e----------------cceEEEEEEeecCCccchh------HHHHHHHHHHHCC
Q psy14484 357 FR-----------------------Q----------------KGMIWAFDVIIEDPEQIET------FSKKFFVAALKNE 391 (430)
Q Consensus 357 ~~-----------------------~----------------~g~~~~~~~~~~~~~~~~~------~a~~~~~~l~~~G 391 (430)
+. + .-+=+.+... .-...... -+..+.+.|.++|
T Consensus 450 v~~~~~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~-G~~~~~G~~~~~Gipg~~l~~~L~e~g 528 (720)
T PRK13578 450 VDGKPWQDYPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTP-GIDAETGEYEDFGIPATILANYLRENG 528 (720)
T ss_pred ccccccccCchhhhcccccccccccCccccccccccccccccCCceEEEEcC-CcCcccccccccCccHHHHHHHHHHcC
Confidence 00 0 0000111111 10000000 0357888898889
Q ss_pred cEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 392 LLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 392 v~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
|.+..++ ..+-|.++...|+++++.++++|.+.
T Consensus 529 I~~E~~d~~~vL~l~s~g~t~~~~~~Lv~aL~~f 562 (720)
T PRK13578 529 IVPEKCDLNSILFLLTPAEDMAKLQQLVAMLARF 562 (720)
T ss_pred CEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9998775 67778888899999999999999866
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=85.40 Aligned_cols=361 Identities=13% Similarity=0.106 Sum_probs=185.7
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
++.+ .+..++|+....|.... ..+- ..++..+.. .+..+..+..|++...+.+ +.+.++.+.-|-.|
T Consensus 40 F~l~-Sedv~IDLLTDSGTgam---s~~q----waamm~GDE---AYagsrs~~~L~~avkdif--Gfq~~iPthQGRgA 106 (471)
T COG3033 40 FLLD-SEDVFIDLLTDSGTGAM---TDKQ----WAAMMRGDE---AYAGSRSYYALADAVKDIF--GFQYTIPTHQGRGA 106 (471)
T ss_pred eecc-ccceEEEeeccCCcccc---cHHH----HHHHhccch---hhcccccHHHHHHHHHHhc--CceeeeeccCCccH
Confidence 4444 45688998876544322 1111 112222221 1334556678888888888 67899999988888
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
-...+..+.... . .-+..+.++++..|.-.+-+.....+.- .+..+.+-..+ ..+..|.... -
T Consensus 107 E~Il~~i~ik~~-~--~~pg~~~~~~sN~~FdTTr~h~~~ng~~-~~n~~~~ea~d-~~~~~pFKGd------------~ 169 (471)
T COG3033 107 ENILIPILIKKG-E--QEPGSKMVAFSNYHFDTTRGHIQINGAT-PRNVYVDEAFD-TEVKYPFKGN------------F 169 (471)
T ss_pred HHHHHHHHhhhc-c--ccCCccccccccceecchhHHHHhcCCc-ccccccccccc-ccccCCCCCc------------c
Confidence 776666555421 0 0133455555555544443333333211 11111110000 0111222111 2
Q ss_pred HHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc----CCCCcccccccccCC
Q psy14484 187 AIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV----GCGRTGKFFACEHAE 261 (430)
Q Consensus 187 d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~----g~g~~g~~~~~~~~~ 261 (430)
|++.|++.|++. .+++..|++.- .+|+.|..+-+-+-++++.++|++|||+++.|.+.- -|-+..... ...+.
T Consensus 170 D~~kLe~lidevG~~nvp~I~~ti-T~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g-Yrd~s 247 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTI-TNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG-YRDWS 247 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEE-eccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc-ccccc
Confidence 899999999987 34566555544 555556677888889999999999999999997632 011110000 00111
Q ss_pred C---------CCceeeee-c--ccCCCccccEE-EEEcHH----HHHhhhccCCcccccccCCCCCCHH-HHHHHHHHHH
Q psy14484 262 I---------WPDFLCLS-K--GITGGYLPLSL-VMTTDK----IYNSIYYKNNINIFLHSHSYSGNPL-ACCAALATLE 323 (430)
Q Consensus 262 ~---------~~d~~~~s-K--~l~gG~~~ig~-~~~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~ 323 (430)
+ ..|-.++| | ++ ..+|. ++.+.+ +...+.. ..-...-..|+++-.- .+.+....|+
T Consensus 248 I~~IarEm~sYaD~~~mS~KKD~l----vnmGGfl~~~D~~~fDvy~~~~~--~~V~~eG~~tYGgl~GrdmealAvGL~ 321 (471)
T COG3033 248 IEEIAREMYSYADGCTMSAKKDGL----VNMGGFLCFKDDSFFDVYEECRT--LVVVQEGFPTYGGLAGRDMEALAVGLR 321 (471)
T ss_pred HHHHHHHHHhhhhhheeeccccce----eccccEEEecCccHHHHHHHHHh--heEeeccccccCcccchhHHHHHHHHH
Confidence 1 24555666 3 33 34454 444544 4444332 0000011234433211 1222222344
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhH-HHHHHHHH-HHCCcEEee-----
Q psy14484 324 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF-SKKFFVAA-LKNELLLRP----- 396 (430)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-a~~~~~~l-~~~Gv~~~~----- 396 (430)
..-+.++.++--+..++|.++|.+. +.|++..+-|-+.++-..-. -...+.+.| ++.|+-.| ++.||-...
T Consensus 322 e~~~~~yl~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~-lphip~eqFpaqala~ely~e~GiRavElG~~~ 399 (471)
T COG3033 322 EGVNFDYLAHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKF-LPHIPAEQFPAQALACELYKEAGIRAVELGSFS 399 (471)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhc-CCeeEecCCCceEEeehhhh-cCCCChhhCcHHHHHHHHHHHhCeeeeeeecee
Confidence 3334566666666788999999876 44544444443333321100 001111111 34444444 344654432
Q ss_pred ------------c-CCEEEEeCCCCC-CHHHHHHHHHHHHHHHHH
Q psy14484 397 ------------I-GNTVYLMPPYIL-NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ------------~-~~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~ 427 (430)
+ -+.+|++++... |.+++|..++.+++....
T Consensus 400 ~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 400 LGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred cccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 0 157899888765 999999999999887753
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=93.74 Aligned_cols=299 Identities=10% Similarity=0.087 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhhcCCCCCe-EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchhh
Q psy14484 78 PVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKEI 155 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~-v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~ 155 (430)
...+.++..++.++ .++ .+++||.|.+|.+++.+++. ++++ |.++...|-+..-++.+++. |.|-.
T Consensus 196 ~i~eAe~~aA~~fg--Ad~tyfvvNGTS~~n~av~~a~~~--------~Gd~-VLvdRN~HKSv~~aLilsga~PVYl~- 263 (713)
T PRK15399 196 PHLEAEEYIARTFG--AEQSYIVTNGTSTSNKIVGMYAAP--------AGST-LLIDRNCHKSLAHLLMMSDVVPIWLK- 263 (713)
T ss_pred HHHHHHHHHHHHhC--CCcEEEEeCChHHHHHHHHHHhcC--------CCCE-EEeecccHHHHHHHHHHcCCeeEEec-
Confidence 44456667777884 454 55667778888888877764 4454 44788888876655555542 22210
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC---eEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK---IAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~---~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
|.-+.+....+.+.+++ +.+.++++++++++. .++|++.| +=.|.... ++.|.+.|
T Consensus 264 -----------P~~n~~Gi~g~I~~~~~---~~e~I~~~i~~~p~~~~p~~vvit~p---TYdGi~yd----~~~I~~~~ 322 (713)
T PRK15399 264 -----------PTRNALGILGGIPRREF---TRDSIEEKVAATTQAQWPVHAVITNS---TYDGLLYN----TDWIKQTL 322 (713)
T ss_pred -----------ccccccCCcCCCChhhc---cHHHHHHHHHhCCCcCCceEEEEECC---CCCceeeC----HHHHHHHh
Confidence 11111122222223233 458889999987642 35666666 23464444 77777777
Q ss_pred HhcCCEE-EEeccccCCCCcccc----cccccCCCCCcee---eee--cccCCCccccEEEEEcHH-----HHHhhhccC
Q psy14484 233 NNYNIHL-IADEIAVGCGRTGKF----FACEHAEIWPDFL---CLS--KGITGGYLPLSLVMTTDK-----IYNSIYYKN 297 (430)
Q Consensus 233 ~~~gi~l-i~DEv~~g~g~~g~~----~~~~~~~~~~d~~---~~s--K~l~gG~~~ig~~~~~~~-----~~~~~~~~~ 297 (430)
|+.+ ++||++.+...-.+. .+.. .+-.+|.+ +-| |.+++= ..-+++-.+.. +.+.+..
T Consensus 323 ---g~~~ilvDEAhgah~~F~p~~~~~sam~-~~~~aD~~i~~tQStHKtL~al-TQaS~iHvk~~vd~~~~n~a~~m-- 395 (713)
T PRK15399 323 ---DVPSIHFDSAWVPYTHFHPIYQGKSGMS-GERVPGKVIFETQSTHKMLAAF-SQASLIHIKGEYDEETFNEAFMM-- 395 (713)
T ss_pred ---CCCEEEEeccchhhhhcCcccCCcChhh-CCCCCCeeeeeeeehhcccccc-chheeeeecCCCCHHHHHHHHHH--
Confidence 6766 699998754221111 1221 11135766 444 766551 22344444332 2222222
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhc-CCCe-eeEee-------------
Q psy14484 298 NINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLIT-HPKI-INFRQ------------- 359 (430)
Q Consensus 298 ~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~-~~~~-~~~~~------------- 359 (430)
+.+| +++-+-++..-.+-.+++ ...+.++..+.+..+++.+.++.. ...+ ..+-.
T Consensus 396 ------~~ST-SPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~ 468 (713)
T PRK15399 396 ------HTST-SPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVA 468 (713)
T ss_pred ------HcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecC
Confidence 3333 333333332222333443 245677788888888888876522 0000 00000
Q ss_pred ------------------cceEEEEEEeec-C---C-ccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHH
Q psy14484 360 ------------------KGMIWAFDVIIE-D---P-EQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 415 (430)
Q Consensus 360 ------------------~g~~~~~~~~~~-~---~-~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~ 415 (430)
..+=+.+... . + . ....--+..+.+.|.++||.+..++ ..+-|.++...|+++++
T Consensus 469 p~~~whgf~~~~~~~~~lDP~KltI~t~-g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~ 547 (713)
T PRK15399 469 PGEQWHGFKDADADHMFLDPVKVTILTP-GMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAM 547 (713)
T ss_pred CCcccccccccccccccCCCceEEEEec-CcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHH
Confidence 0000111111 0 0 0 0000014578888999999998775 67778888899999999
Q ss_pred HHHHHHHHH
Q psy14484 416 HMTSAIFQT 424 (430)
Q Consensus 416 ~~~~~l~~~ 424 (430)
.++++|.+.
T Consensus 548 ~L~~aL~~f 556 (713)
T PRK15399 548 GLLRGLTEF 556 (713)
T ss_pred HHHHHHHHH
Confidence 999998765
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-07 Score=95.73 Aligned_cols=301 Identities=9% Similarity=0.077 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCCCCCe-EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC-ccchh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI-QSFKE 154 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~-v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~ 154 (430)
....+.++..++.+ +.++ .+++||.|.+|.+++.+++. ++++ |.++...|-+..-++.+++. |.|-.
T Consensus 195 G~i~eAe~~AA~~f--gAd~tyfvvNGTS~~n~av~~a~~~--------~Gd~-VLvdRN~HKSv~haLilsga~PVYl~ 263 (714)
T PRK15400 195 GPHKEAEEYIARVF--NADRSYMVTNGTSTANKIVGMYSAP--------AGST-VLIDRNCHKSLTHLMMMSDVTPIYFR 263 (714)
T ss_pred hHHHHHHHHHHHHh--CCCcEEEEeCchHHHHHHHHHHhcC--------CCCE-EEeecccHHHHHHHHHHcCCeEEEec
Confidence 34456667777788 4454 55566778888877777663 4444 55788889886666655552 22211
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe---EEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI---AAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~---~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
|.-+.+....+.+..++ +.+.++++++++++.. .+|++.| +=.|.... ++.|.+.
T Consensus 264 ------------P~rn~~Gi~g~I~~~~~---~~e~i~~~i~~~p~ak~p~~~vit~p---TYdG~~yd----~~~I~~~ 321 (714)
T PRK15400 264 ------------PTRNAYGILGGIPQSEF---QHATIAKRVKETPNATWPVHAVITNS---TYDGLLYN----TDFIKKT 321 (714)
T ss_pred ------------ccccccCCccCCCcccc---CHHHHHHHHHhCccccCccEEEEECC---CCccEecC----HHHHHHH
Confidence 10011111112222222 4688899998875422 4666666 23464444 8889999
Q ss_pred HHhcCCEEEEeccccCCCCccccc----ccccCCCC-Cc--eeeee--cccCCCccccEEEE----Ec-HHHHHhhhccC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFF----ACEHAEIW-PD--FLCLS--KGITGGYLPLSLVM----TT-DKIYNSIYYKN 297 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~----~~~~~~~~-~d--~~~~s--K~l~gG~~~ig~~~----~~-~~~~~~~~~~~ 297 (430)
|+.++ +++||++.+...-...+ +.. .+-. .| +++-| |.+++= ..-+++- .. +.+.+.+..
T Consensus 322 ~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~al-TQaS~LHvkg~vd~~~~n~a~~m-- 395 (714)
T PRK15400 322 LDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNEAYMM-- 395 (714)
T ss_pred hCCCC--EEEEccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccch-hHHhHHHHcCCCCHHHHHHHHHH--
Confidence 98887 68999987542211111 121 1211 13 55555 765540 0111111 12 223333332
Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhc-CCC--eeeEe-------------
Q psy14484 298 NINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLIT-HPK--IINFR------------- 358 (430)
Q Consensus 298 ~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~-~~~--~~~~~------------- 358 (430)
+.+| +++-+-++..-.+-.+++ ...+.+...+.+..+++.|.++.. ... +....
T Consensus 396 ------~~ST-SPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~ 468 (714)
T PRK15400 396 ------HTTT-SPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLR 468 (714)
T ss_pred ------HcCC-CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccC
Confidence 3333 333333332223333443 245677788888889998877632 000 00000
Q ss_pred ------e-----------cceEEEEEEeecCCcc----chh-HHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHH
Q psy14484 359 ------Q-----------KGMIWAFDVIIEDPEQ----IET-FSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQ 415 (430)
Q Consensus 359 ------~-----------~g~~~~~~~~~~~~~~----~~~-~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~ 415 (430)
+ ..+=+.+..+ .-... ... -+..+.+.|.++||.+..++ ..+-|.++...|+++++
T Consensus 469 p~~~whgf~~~~~~~~~lDP~Klti~tp-gi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~ 547 (714)
T PRK15400 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTP-GMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKAL 547 (714)
T ss_pred ccccccCcccccccccccCCceEEEEeC-CCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHH
Confidence 0 0000111111 10000 000 14568888999999998765 67788889999999999
Q ss_pred HHHHHHHHH
Q psy14484 416 HMTSAIFQT 424 (430)
Q Consensus 416 ~~~~~l~~~ 424 (430)
.++++|.+.
T Consensus 548 ~L~~aL~~f 556 (714)
T PRK15400 548 SLLRALTDF 556 (714)
T ss_pred HHHHHHHHH
Confidence 999999865
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-07 Score=87.39 Aligned_cols=349 Identities=13% Similarity=0.163 Sum_probs=191.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc--ccCCCCCHHHHHHHHHHHhhcCCCCCeE-EEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKLSSLTQYKLGHC-FYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~v-~~~~sgteA~ 107 (430)
.||+--+..+|+ +...+ +|+..+-+.+.+.+++.. .-+........+....++.++....+.+ .-|.|||||.
T Consensus 76 ld~~~~~~~vS~--~v~~~--~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~ 151 (491)
T KOG1383|consen 76 LDGNPRLGLASG--VVYWG--EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESG 151 (491)
T ss_pred cCCCcccCeeeE--EEecC--CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCCccccCccccccchHH
Confidence 355533333444 44454 566666666666654322 2223334566677788888887554433 5678999998
Q ss_pred HHHHHHHHHhhhh-cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYN-KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~-~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (430)
..+.+.-+..+.. +|. .++.+++. ..-| ..+.+....+..+...+++. .+++.
T Consensus 152 l~~~k~~~~~r~~~k~I-~~p~iv~~-~~v~------------~a~eK~a~yf~v~l~~V~~~~~~~~~----------- 206 (491)
T KOG1383|consen 152 LAAKKSYRNRRKAQKGI-DKPNIVTP-QNVH------------AAFEKAARYFEVELREVPLDEGDYRV----------- 206 (491)
T ss_pred HHHHHHHHHHHHhccCC-CCccccch-HHHH------------HHHHHHHhhEEEEEEeeeccccceEe-----------
Confidence 8887766654433 232 22333331 1111 11222111222334556655 33444
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh-cCCEEEEeccccCCCCc-ccccccccCCCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-YNIHLIADEIAVGCGRT-GKFFACEHAEIW 263 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~-~gi~li~DEv~~g~g~~-g~~~~~~~~~~~ 263 (430)
|+..+.+.++ +++.+++++- .+.+.|.+-+ +++|.++.-+ +++++++|.+-.||--. +. .....+++.
T Consensus 207 -D~~k~~~~i~---eNti~lv~~~-~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~-~~~~~fdFr 276 (491)
T KOG1383|consen 207 -DPGKVVRMID---ENTIMLVGSL-PNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGY-LNEEEFDFR 276 (491)
T ss_pred -cHHHHHHHhc---cceEEEEEEc-CCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccc-cCccccccC
Confidence 8888888885 6899999998 8888897766 9999999999 99999999998888432 21 111223321
Q ss_pred -Cceeee---e-c-ccCCCccccEEEEEc-HHH-HHhhhcc-CCcccccccCCCCCCHH--HHHHHHHHHHHHhhcCH--
Q psy14484 264 -PDFLCL---S-K-GITGGYLPLSLVMTT-DKI-YNSIYYK-NNINIFLHSHSYSGNPL--ACCAALATLEIFNKDNI-- 330 (430)
Q Consensus 264 -~d~~~~---s-K-~l~gG~~~ig~~~~~-~~~-~~~~~~~-~~~~~~~~~~t~~~~~~--~~~aa~~~l~~~~~~~~-- 330 (430)
|-+.+. + | ++.- ..+|+++-+ +++ .+++... ...+...-+.|..++-. -.++.+++|--+..+++
T Consensus 277 ~p~V~Sisa~~HKYGl~~--~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~ 354 (491)
T KOG1383|consen 277 VPGVTSISADGHKYGLAP--AGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRE 354 (491)
T ss_pred CCCceeEeeccceeeeee--cCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHH
Confidence 222222 2 3 2332 236677665 333 2222211 12223333444444322 12344455433334444
Q ss_pred -HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--CCEEEEeCCC
Q psy14484 331 -LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPY 407 (430)
Q Consensus 331 -~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~~ 407 (430)
.+++.+....+++++++..+...+ +... +++... +...-. --++.+.|.+.|..+... +..+-+++..
T Consensus 355 ~~~~ive~~~~l~egie~i~~i~i~----gkp~-vs~~~~-~s~~~~---i~elsd~l~~~GW~lnalq~P~a~Hi~vt~ 425 (491)
T KOG1383|consen 355 NTQNIVETARKLREGIENIKGIKIV----GKPL-VSFILF-GSNDVN---IFELSDLLRKKGWILNALQFPAAIHICVTR 425 (491)
T ss_pred HHHHHHHHHHHHHHhhhccccceec----CCCc-EEEEEc-cCCccc---hhhhhHHHHhcCcCccccCCCCceEEEEEe
Confidence 456677888889999876443332 2222 233333 221111 146888899999877532 3334444444
Q ss_pred CCCHHH-HHHHHHHHHHHHHHhh
Q psy14484 408 ILNKNE-IQHMTSAIFQTFNEVI 429 (430)
Q Consensus 408 ~~t~e~-i~~~~~~l~~~l~~~~ 429 (430)
.+..++ .++++..|++++.++.
T Consensus 426 ~~~~~~~A~~~v~Di~~~~~el~ 448 (491)
T KOG1383|consen 426 VHAREDVADRFVADIRKVVEELK 448 (491)
T ss_pred eeccHHHHHHHHHHHHHHHHHHH
Confidence 444444 6889999999988764
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=81.57 Aligned_cols=230 Identities=13% Similarity=0.134 Sum_probs=131.6
Q ss_pred cccCCCC--CHHHHHHHHHHHhhcccc---ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhh
Q psy14484 45 VNLFGHS--NSYINKALKNQLNKLEHV---MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 45 ~~~lG~~--~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~ 119 (430)
-.++|-+ +|++.+++.+.+...-.. -..+....-...+++.++... ..+.++++|.-+.|+.+++-....
T Consensus 31 ~t~lG~s~~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~--~aea~~ivnnn~aAVll~~~al~~--- 105 (395)
T COG1921 31 MTNLGRSLYSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLT--GAEAAAIVNNNAAAVLLTLNALAE--- 105 (395)
T ss_pred eccCCCccCCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhccc--chhheeeECCcHHHHHHHHhhhcc---
Confidence 3455543 789999988877653211 001111122224445555444 557889999999999887766553
Q ss_pred hcCCCCCcEEEEEcC---CCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy14484 120 NKGFLNKKKFICLQN---SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~---~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 196 (430)
++..|+..-+ ++|......+...+.. .+.+-+..+. ...+++.+|.
T Consensus 106 -----~~EvVis~g~lV~gg~~~v~d~~~~aG~~--------------l~EvG~tn~t------------~~~d~~~AIn 154 (395)
T COG1921 106 -----GKEVVVSRGELVEGGAFRVPDIIRLAGAK--------------LVEVGTTNRT------------HLKDYELAIN 154 (395)
T ss_pred -----CCeEEEEccccccCCCCChhHHHHHcCCE--------------EEEecccCcC------------CHHHHHHHhc
Confidence 4455553322 3444444444443321 2222221121 6778888997
Q ss_pred hCCCCeEEEE--EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cc
Q psy14484 197 KNHNKIAAII--IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KG 272 (430)
Q Consensus 197 ~~~~~~~~vi--~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~ 272 (430)
+ ++++.+ .++ ..+-.+ ..+ ++++.++|+++|+++|+|..-...-+ ..+-........+|+++|| |.
T Consensus 155 e---~ta~llkV~s~-~~~f~~-~l~----~~~l~~ia~~~~lpvivD~aSg~~v~-~e~~l~~~la~GaDLV~~SgdKl 224 (395)
T COG1921 155 E---NTALLLKVHSS-NYGFTG-MLS----EEELVEIAHEKGLPVIVDLASGALVD-KEPDLREALALGADLVSFSGDKL 224 (395)
T ss_pred c---CCeeEEEEeec-cccccc-ccc----HHHHHHHHHHcCCCEEEecCCccccc-cccchhHHHhcCCCEEEEecchh
Confidence 4 333322 222 222233 333 78899999999999999986421111 1111122334568999999 77
Q ss_pred cCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 273 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 273 l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
|+| ..-|.+++++++++.+...+ ..-.+-.....+++..++|+.+..+
T Consensus 225 lgG--PqaGii~GkKelI~~lq~~~------l~Ralrv~K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 225 LGG--PQAGIIVGKKELIEKLQSHP------LKRALRVDKETLAALEAALELYLQP 272 (395)
T ss_pred cCC--CccceEechHHHHHHHHhhh------hhhhhhcCcHhHHHHHHHHHHHcCc
Confidence 776 46889999999998887621 1122233455666677778766553
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-06 Score=78.02 Aligned_cols=204 Identities=13% Similarity=0.144 Sum_probs=113.3
Q ss_pred CHHHHHHHHHH-HhhccccccC--CCCCHHHHHHHHHHHhhcCCCCCeEEEc---CCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 52 NSYINKALKNQ-LNKLEHVMLS--NLTHKPVIKLSEKLSSLTQYKLGHCFYG---SDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 52 ~p~v~~a~~~~-~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~v~~~---~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
..+|.+|+++. +......... ++.+.-++.|.+..++.+ +.|..++= -|||.|+..++...++ +
T Consensus 26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vf--gaE~ALVRpq~vSGTHAi~~~Lfg~Lr--------p 95 (403)
T PF06838_consen 26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVF--GAEDALVRPQFVSGTHAIALALFGVLR--------P 95 (403)
T ss_dssp HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHC--T-SEEEEETTS-SHHHHHHHHHHHH----------T
T ss_pred HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHh--CchhhhhcccccchHHHHHHHHHhcCC--------C
Confidence 45677777652 2221111122 344567788888999999 55655554 3999999999998887 6
Q ss_pred CcEEEEEcCCCCCcchhh----hccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 126 KKKFICLQNSYHGETLGA----LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
.+..+... |..+.+ ..+.+. -...+..+......++..++... |++.++++++ ++
T Consensus 96 GD~ll~~t----G~PYDTL~~VIG~~g~--~~GSL~e~Gi~Y~~v~L~~dg~~------------D~~~i~~~~~---~~ 154 (403)
T PF06838_consen 96 GDELLSIT----GKPYDTLEEVIGIRGN--GPGSLKEFGIKYREVPLTEDGTI------------DWEAIKKALK---PN 154 (403)
T ss_dssp T-EEEESS----SS--CCHHHHHTSSSS--SSSSTGGGT-EEEE--B-TTSSB-------------HHHHHHHHH---TT
T ss_pred CCeEEEcC----CCchhhHHHHhCCCCC--CCCChHHhCceeEEEeecCCCCc------------CHHHHHHhhc---cC
Confidence 67777655 332222 222221 01112222233344554443333 8999999997 57
Q ss_pred eEEEEEccccccCCCc---ccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccC
Q psy14484 202 IAAIIIEPLVQCAGGM---IMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGIT 274 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~---~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~ 274 (430)
+++|.+.- +.|- ...+.+.++++.++.|+ -++++.||.+|..|.-+- +...+..|++ ++=|..|
T Consensus 155 tk~v~IQR----SrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~~-----EP~~vGADl~aGSLIKNpG 225 (403)
T PF06838_consen 155 TKMVLIQR----SRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVETQ-----EPTEVGADLMAGSLIKNPG 225 (403)
T ss_dssp EEEEEEE-----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSSS------GGGGT-SEEEEETTSGGG
T ss_pred ceEEEEec----CCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecccc-----CccccchhheeccceeCCC
Confidence 88888654 2221 23344566677777776 578999999998874332 2234567887 4669999
Q ss_pred CCccccE-EEEEcHHHHHhhhc
Q psy14484 275 GGYLPLS-LVMTTDKIYNSIYY 295 (430)
Q Consensus 275 gG~~~ig-~~~~~~~~~~~~~~ 295 (430)
||..|.| ++++++++++....
T Consensus 226 GgiAptGGYIaGr~~lVe~~a~ 247 (403)
T PF06838_consen 226 GGIAPTGGYIAGRKDLVERAAY 247 (403)
T ss_dssp TTT-SS-EEEEESHHHHHHHHH
T ss_pred CCccCcCCEEechHHHHHHHHh
Confidence 9877755 78899999887553
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-06 Score=80.66 Aligned_cols=287 Identities=13% Similarity=0.144 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
...-++...++++++.+....-+..+++.+-++++.+.+... . .+++|++ +.+-|+.+...+....
T Consensus 110 q~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~-~----~~~~vlv-~~~~hP~~~~v~~t~a-------- 175 (429)
T PF02347_consen 110 QALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATK-R----KRNKVLV-PESLHPQTRAVLRTYA-------- 175 (429)
T ss_dssp HHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHT-T-------EEEE-ETTS-CHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcc-c----CCcEEEE-cCCcChhhHHHHHHhh--------
Confidence 555688899999994443345677788888886655444321 1 1235555 4556665544332111
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.+...+++.++....... | .+++++|+++. ++.. |.+-. +++|.++++++|
T Consensus 176 ~~~g~~iv~~~~~~~~~~------------d-----------~~~~a~v~vq~-Pn~~-G~~ed----~~~i~~~~h~~g 226 (429)
T PF02347_consen 176 APLGIEIVEVPLDEDGTT------------D-----------DDDTAAVMVQN-PNTF-GVFED----IKEIADIAHAAG 226 (429)
T ss_dssp CHCCEEEEEE-BBTTCSB------------------------STTEEEEEEES-S-TT-SB--T----HHHHHHHHHHTT
T ss_pred hhCCeEEEEecccccCCc------------c-----------ccCeEEEEeec-CCCC-ceEee----HHHHHHHHHHcC
Confidence 122233344433221111 2 36899988876 5544 43433 999999999999
Q ss_pred CEEEEeccccCCCCcccccccccC-CCCCceee-eecc----cCCCccccEEEEEcHHHHHhhhcc--------CCcccc
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHA-EIWPDFLC-LSKG----ITGGYLPLSLVMTTDKIYNSIYYK--------NNINIF 302 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~-~sK~----l~gG~~~ig~~~~~~~~~~~~~~~--------~~~~~~ 302 (430)
+++++ -+ ..--.+ .+... .+..||++ .+|. +++|+--.|++.+++++...+-.. ...+.+
T Consensus 227 al~~~-~a--d~~aL~---~l~~Pge~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~ 300 (429)
T PF02347_consen 227 ALVIV-GA--DPNALG---GLKSPGEYGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAF 300 (429)
T ss_dssp -EEEE-CG--GCCGCC---TC--GGGGT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCE
T ss_pred CEEEE-ec--CHHHHh---CcCChhhcCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccccccccccee
Confidence 99887 22 110000 01111 12357774 2354 444544588888898876554321 000111
Q ss_pred --------------cccCCCCCCHHHHH-HHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE
Q psy14484 303 --------------LHSHSYSGNPLACC-AALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIW 364 (430)
Q Consensus 303 --------------~~~~t~~~~~~~~~-aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~ 364 (430)
.-.+.++.|..-++ ++...+..+..++ ..+++..++.++.++|+++...+. ...-.+-
T Consensus 301 ~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~----~~~~f~e 376 (429)
T PF02347_consen 301 VLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPF----DNPFFFE 376 (429)
T ss_dssp EEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECS----SSSSBSS
T ss_pred eeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCccc----CCCCcee
Confidence 01123333433332 3333444444433 456778889999999987511111 1111111
Q ss_pred EEEEeecCCccchhHHHHHHHHHHHCCcEEee-cCCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 365 AFDVIIEDPEQIETFSKKFFVAALKNELLLRP-IGNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 365 ~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-~~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+... . .. . ...++.+++...|+.... ..+.+-+++.-.+|++|||.+++.|
T Consensus 377 ~v~~~-~-~~--~-~~~~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 377 FVVVF-S-KD--K-EVEELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EEEEE-S-S---H-HHHHHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred eeeec-C-Cc--H-HHHHHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 12122 1 11 1 123466666666754432 2368899999999999999999875
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=69.63 Aligned_cols=344 Identities=13% Similarity=0.122 Sum_probs=187.6
Q ss_pred ccCCCCCHHHHHHHHHHHhhcccc---ccCCCCC---HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhh
Q psy14484 46 NLFGHSNSYINKALKNQLNKLEHV---MLSNLTH---KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 46 ~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~---~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~ 119 (430)
++||.-+....+.+.+.+++.... +...+.. ..-+.+...++...++.-++|.+.||-|--+...+-.....+
T Consensus 74 NSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNlh~Ll~sFyKPT- 152 (465)
T KOG3846|consen 74 NSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNLHSLLISFYKPT- 152 (465)
T ss_pred cccccCchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHHHHHHHHhcCCc-
Confidence 579988888888888877764322 1111110 011223345666677677788888887655554444443322
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT-TPDSRNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
+.|-+|+.-..+|....++.-+-..-.+ ...+..++- -|. +..+.. ..+++-+.|.++
T Consensus 153 ----ekR~KILlE~kaFPSDhYAiesQ~~lhG-------~~~e~sm~~iePR-------EGEetl---RteDILd~IEkn 211 (465)
T KOG3846|consen 153 ----EKRFKILLEKKAFPSDHYAIESQCKLHG-------ISPENSMIQIEPR-------EGEETL---RTEDILDTIEKN 211 (465)
T ss_pred ----chhhhhhhccCCCCchHHHHHhhhhhcC-------CChHHheEEeccc-------ccccch---hHHHHHHHHHhc
Confidence 2456788777777654332222111000 001111111 111 111111 445666677777
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCC
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG 276 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG 276 (430)
.+.++.|.++. |+--+|.... +.+|-..-+..|+++=.|=+++ +|... .....|| .|+.+ --|.+..|
T Consensus 212 gDeiA~v~fSG-vqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vgNVp--L~LHdWg--VDFACWCSYKYlnaG 281 (465)
T KOG3846|consen 212 GDEIALVCFSG-VQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VGNVP--LQLHDWG--VDFACWCSYKYLNAG 281 (465)
T ss_pred CCeEEEEEeec-ceeecccccc----hhhhhhcccCCCcEechhhhhh-hcCCc--eEEeecC--CceEEEeeecccccC
Confidence 78899999999 9999997777 7788877777899999998876 54331 2223344 46665 33765544
Q ss_pred ccccEEEEEcHHHHHhhhcc-------CCcccccc-----------cCCCCCCHH-HHHHHHHHHHHHhh---cCHHHHH
Q psy14484 277 YLPLSLVMTTDKIYNSIYYK-------NNINIFLH-----------SHSYSGNPL-ACCAALATLEIFNK---DNILQRI 334 (430)
Q Consensus 277 ~~~ig~~~~~~~~~~~~~~~-------~~~~~~~~-----------~~t~~~~~~-~~~aa~~~l~~~~~---~~~~~~~ 334 (430)
.-.||.++..++......+. ..+..+.. +...+..|+ -.++.+..|++... ++++.+.
T Consensus 282 aGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS 361 (465)
T KOG3846|consen 282 AGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRS 361 (465)
T ss_pred CCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhh
Confidence 33588888876543221110 00001110 111122222 23334455665543 2333333
Q ss_pred HHHHHHHHHHHHchh--cCCC------e-----eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCE
Q psy14484 335 SQDMKKITKALTSLI--THPK------I-----INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNT 400 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~--~~~~------~-----~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~ 400 (430)
--+..++...++... .++. + ....-+|.-+.+.+. ++ ...+.+.|.++|+++... ++.
T Consensus 362 ~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fs-sp-------~~~vfqeL~krGv~~DkR~PNv 433 (465)
T KOG3846|consen 362 LLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFS-SP-------TPKVFQELHKRGVIGDKRRPNV 433 (465)
T ss_pred hhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeC-CC-------chHHHHHHHHcCeeccccCCCc
Confidence 223333333333321 1111 0 112334444444443 21 146899999999998754 689
Q ss_pred EEEeC-CCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 401 VYLMP-PYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 401 lR~~~-~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
||+.| +++++-.++..++..|.++++.+.
T Consensus 434 IRvAPvpLYN~f~Dvy~f~n~L~e~~d~~e 463 (465)
T KOG3846|consen 434 IRVAPVPLYNTFSDVYIFVNALNEAMDKLE 463 (465)
T ss_pred eEeecchhhccHHHHHHHHHHHHHHHHHhh
Confidence 99886 567899999999999999988764
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-05 Score=79.90 Aligned_cols=286 Identities=13% Similarity=0.069 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+..-+++..++++++.+..+..+..++|.+-++++.+.+.. ++ ++++|++. .+-|..+...+.. ..
T Consensus 109 e~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~---~~--~~~~vlv~-~~~hP~~~~v~~t--------~a 174 (939)
T TIGR00461 109 EALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVS---KK--KANKFFVA-KDLHPQTKSVLHT--------RA 174 (939)
T ss_pred HHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhh---cC--CCCEEEEC-CCCCcchHHHHHH--------HH
Confidence 55568888999999767667888899998888655543321 11 24566654 4445443322210 11
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.....+++.+ |+++|+..+ +++++++.. + +..|.+-. +++|.++++++|
T Consensus 175 ~~~g~~v~~~--------------------~~~~l~~~~-----~~~~v~~q~-P-n~~G~ied----~~~i~~~~h~~g 223 (939)
T TIGR00461 175 KPFGIEVIVV--------------------DCSDIKKAV-----DVFGCLLQY-P-ATDGSILD----YKQLIDALHSHK 223 (939)
T ss_pred HhcCcEEEEE--------------------cHHHHhhcC-----CEEEEEEEC-C-CCCeEEec----HHHHHHHHHHcC
Confidence 1222233332 344555444 366666643 3 45565654 899999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceee-----eecccCCCccccEEEEEcHHHHHhhhcc--C----C--ccccc
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLC-----LSKGITGGYLPLSLVMTTDKIYNSIYYK--N----N--INIFL 303 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~-----~sK~l~gG~~~ig~~~~~~~~~~~~~~~--~----~--~~~~~ 303 (430)
++++++.-...++..-.+ . ++..|+++ |+=.+++|+--.|++.+++++...+-.. + . .+.+.
T Consensus 224 al~~~~ad~~al~ll~~P---g--e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~ 298 (939)
T TIGR00461 224 SLVSVAADLMALTLLTPP---G--HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALR 298 (939)
T ss_pred CEEEEEechHHhCCcCCH---H--HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccce
Confidence 999997543322111111 1 22357763 2334454533377788888776554321 0 0 00010
Q ss_pred c------------cCCCCCC-HHHHHHHHHH--HHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE
Q psy14484 304 H------------SHSYSGN-PLACCAALAT--LEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365 (430)
Q Consensus 304 ~------------~~t~~~~-~~~~~aa~~~--l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~ 365 (430)
. ..|.+.. .-++.+..++ +..+..++ +.+++..++.++.++|++. ++..+.. ..|-.
T Consensus 299 l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~----~fF~~ 373 (939)
T TIGR00461 299 LALQTREQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINK----TWFDT 373 (939)
T ss_pred eecccccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC----Cccce
Confidence 0 1121111 1122222222 33333333 3456677778888888764 2222111 22323
Q ss_pred EEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
+.+. -+. .. +.++.+.+.++||.+... ++.+++++.-.+|++||+.+++.|.
T Consensus 374 ~~v~-~~~--~~--~~~i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 374 LTVK-VGN--GI--SSELLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred EEEE-eCC--CC--HHHHHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 3333 210 01 467999999999998765 4689999999999999999999984
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=87.09 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=52.3
Q ss_pred ccCCCC--CHHHHHHHHHHHhhcccc---ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhh
Q psy14484 46 NLFGHS--NSYINKALKNQLNKLEHV---MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 46 ~~lG~~--~p~v~~a~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~ 120 (430)
.+||-+ +|++.+++.+.+..+... ...+..-.-+..+.+.++.++ +.+..+++|+.+.|+.+++.....
T Consensus 11 TnLGRs~l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt--gAeaA~VvNnnaAAv~L~l~~la~---- 84 (367)
T PF03841_consen 11 TNLGRSPLSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT--GAEAALVVNNNAAAVLLALNTLAK---- 84 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc----
Confidence 355543 477888877765543211 000011111234556667776 667888899999999988876653
Q ss_pred cCCCCCcEEEEEcC--CCCCc--chhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy14484 121 KGFLNKKKFICLQN--SYHGE--TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196 (430)
Q Consensus 121 ~g~~~~~~vl~~~~--~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 196 (430)
++..||..-. -+-|. ....+..++ ...+.+-... ...+++.+++|.
T Consensus 85 ----~~EvIvsRGelVeiGgsFRip~vm~~sG--------------a~lvEVGttN------------~t~~~Dye~AI~ 134 (367)
T PF03841_consen 85 ----GKEVIVSRGELVEIGGSFRIPDVMRQSG--------------ARLVEVGTTN------------RTHLSDYEKAIT 134 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----cccccccccccccccccccccccccccc--------------cccccccccc------------cccccccccccc
Confidence 4444432110 00111 111111111 1111111100 125778888886
Q ss_pred hCCCCeEEEE-EccccccCCC-cccCChHHHHHHHHHHHhcCCEEEEecccc------CCCCcccccccccCCCCCceee
Q psy14484 197 KNHNKIAAII-IEPLVQCAGG-MIMYDSIYLKLVREICNNYNIHLIADEIAV------GCGRTGKFFACEHAEIWPDFLC 268 (430)
Q Consensus 197 ~~~~~~~~vi-~ep~v~~~~G-~~~~~~~~l~~l~~l~~~~gi~li~DEv~~------g~g~~g~~~~~~~~~~~~d~~~ 268 (430)
+++++++ +.+..+...| .-.++ ++++.+++++|++++|+|-.-. .++..+.+...+.....+|+++
T Consensus 135 ---e~Ta~ll~Vh~Sn~~i~GFt~~~~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~ 208 (367)
T PF03841_consen 135 ---ENTAALLKVHTSNFRIQGFTGEVS---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVT 208 (367)
T ss_dssp --------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEE
T ss_pred ---cccccccccccccccccccccccc---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEE
Confidence 4566654 3320111111 11222 8999999999999999996531 1222222223333445689999
Q ss_pred ee--cccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 269 LS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 269 ~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
|| |.++| ...|.+++++++++.++..+ ..-.+-.+-..+++..++|+.+.
T Consensus 209 fSGdKlLGG--PQaGiI~Gkk~lI~~lk~~p------l~RalrvdK~tla~L~atL~~Y~ 260 (367)
T PF03841_consen 209 FSGDKLLGG--PQAGIIVGKKELIEKLKKHP------LGRALRVDKLTLAALEATLRLYL 260 (367)
T ss_dssp EETTSSSSS---S-EEEEEEHHHHHHHHHHH------HTTT-B--HHHHHHHHHHHHH--
T ss_pred EECCCcCCC--CCeEEEEeCHHHHHHHhhCC------CcceEeeCHHHHHHHHHHHHHHH
Confidence 99 67776 35799999999999887611 22233445666777777777543
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-05 Score=69.77 Aligned_cols=295 Identities=15% Similarity=0.144 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+..-++...++++.+.+..+.-+.-.+|.+-++++.+-+... . +++++++ +..-|..+...+..- .
T Consensus 120 qaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k---~--k~~~~~V-~~~vhpqt~~Vl~Tr--------a 185 (450)
T COG0403 120 EALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK---K--KRNKFLV-PKDVHPQTLDVLRTR--------A 185 (450)
T ss_pred HHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc---C--cCceEEe-cCCCCHHHHHHHHhh--------c
Confidence 444567778888987777778888888888887665554421 0 2455554 555555554443321 1
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.++..++...+.+ |+++++++ . .+.+++++++- ++.-|..... +++|.+.++++|
T Consensus 186 ~~~g~~i~~~~~~-----------------d~~~l~~~-~--~~~~~gv~vQy-P~~~G~~~~d----~~~l~~~~h~~~ 240 (450)
T COG0403 186 EGLGIEIEVVDAD-----------------DLDDLESA-D--DGDVFGVLVQY-PNTFGIVEED----LRALIEAAHSAG 240 (450)
T ss_pred ccCceEEEEeccc-----------------hhhhhhhc-c--ccCeEEEEEec-CCCCCccchh----HHHHHHHHhhcC
Confidence 1222233333332 77888877 4 35789999987 6655433332 899999999999
Q ss_pred CEEEEeccccCCCCcccccccccC-CCCCceee-----eecccCCCccccEEEEEcHHHHHhhhcc---------C----
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHA-EIWPDFLC-----LSKGITGGYLPLSLVMTTDKIYNSIYYK---------N---- 297 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~-----~sK~l~gG~~~ig~~~~~~~~~~~~~~~---------~---- 297 (430)
+++++=.=--.++- .... .+..||++ |+=.|+-|+.-.|++.+++++...+-.. +
T Consensus 241 al~~v~aDplaL~L------L~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~ 314 (450)
T COG0403 241 ALVIVAADPLALGL------LKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAF 314 (450)
T ss_pred CEEEEEechhHhhc------cCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchh
Confidence 98876421111111 1111 12457664 4444554433477778888775443210 0
Q ss_pred ---------CcccccccCCCCCCHHHHHHHHHHH--HHHhhc---CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE
Q psy14484 298 ---------NINIFLHSHSYSGNPLACCAALATL--EIFNKD---NILQRISQDMKKITKALTSLITHPKIINFRQKGMI 363 (430)
Q Consensus 298 ---------~~~~~~~~~t~~~~~~~~~aa~~~l--~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~ 363 (430)
..|.-.-.+..+.+..-+ |..+++ -.+..+ ++..++.++..++.++|++.. . ++ .+.....|
T Consensus 315 rLaLQTREQHIRReKATSNICTnQaLl-A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~-~-g~-~~~~~~fF 390 (450)
T COG0403 315 RLALQTREQHIRREKATSNICTNQALL-ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG-A-GV-ELVFDHFF 390 (450)
T ss_pred hhhHHHHHHHHhhhccchhhhHHHHHH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC-C-ce-Eeccccce
Confidence 011111112222222222 222222 222222 345667778888888887541 0 11 12122334
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 364 ~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
-.+.+. -+. +.+..+..+....|+.+..-. +.+-+++.-.+|+++|+.+++.|....
T Consensus 391 dt~~v~-~~~----~~~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 391 DTFTVR-VPE----EVAEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred eeEEEe-cch----hHHHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence 333333 211 224677778888898887653 567788888899999999999887653
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-05 Score=73.40 Aligned_cols=222 Identities=9% Similarity=0.070 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccc---cCCCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACE---HAEIW 263 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~---~~~~~ 263 (430)
|++++|+++++.+....+.+++. ..+..+ +.| +-+++|.++|+++||+.++..+|+ .--.-..-..+ ..|..
T Consensus 140 d~~~ie~~i~~~G~~~iLcvltt-tscfap-r~~--D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~~~GRv 214 (389)
T PF05889_consen 140 DLEAIEAKIEELGADNILCVLTT-TSCFAP-RLP--DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAWRVGRV 214 (389)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEEE-SSTTTT-B------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHHHHSTC
T ss_pred cHHHHHHHHHHhCCCCeEEEEEe-cCccCC-CCC--ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHHhcCCc
Confidence 78899999987655555555555 555544 333 459999999999999999999985 50000000000 11222
Q ss_pred -CceeeeecccCCCccccE--EEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHH
Q psy14484 264 -PDFLCLSKGITGGYLPLS--LVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQ 336 (430)
Q Consensus 264 -~d~~~~sK~l~gG~~~ig--~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~ 336 (430)
.++-++.|-+- .|+| .+.. .+..+..+.. .+.+--+..|. .-...+|..+.. ..+.....+
T Consensus 215 da~vqS~dkNF~---VPvGgai~As~~~~~i~~vs~-------~YpGRas~sp~--ld~~itLl~LG~~g~~~ll~~r~~ 282 (389)
T PF05889_consen 215 DAFVQSTDKNFM---VPVGGAIMASFDPSGILAVSK-------EYPGRASASPS--LDLFITLLSLGCTGYGALLKERKA 282 (389)
T ss_dssp SEEEEEHHHHHC---EESSHEEEEESSHHHHHHHHH-------TSHSHBTSHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeecCCCEE---ecCCCcEEEecCHHHHHHHHH-------Hhhhhhhcccc--hHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22335556543 1222 2333 3445555543 01111111121 112233333322 233344455
Q ss_pred HHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcE----Eeec------------C
Q psy14484 337 DMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELL----LRPI------------G 398 (430)
Q Consensus 337 ~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~----~~~~------------~ 398 (430)
.-.++.++|+++ +++.. +...+.....+++++. .-..........|...|..+||. +.+. .
T Consensus 283 ~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~-~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~ 361 (389)
T PF05889_consen 283 SFPYLKERLKKWAEEVGERLLETPRNHISMAFTLD-TLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPC 361 (389)
T ss_dssp HHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-T-TCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SS
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECc-cchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCch
Confidence 666677777766 33332 2233444555666665 22111111135688888888653 2221 1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.++-+...+..++||++.++++|+++++
T Consensus 362 ~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 362 PYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4666766888999999999999999874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=67.21 Aligned_cols=229 Identities=16% Similarity=0.184 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC-
Q psy14484 187 AIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW- 263 (430)
Q Consensus 187 d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~- 263 (430)
+-+.|+++|.+- .+-+..+++-. +.+++. .. -+.+.+|..+|+++|++|++|.+|+|-...-+.+-.-.-|++
T Consensus 218 r~~~L~~AIe~D~arGlIPf~v~at-~GTT~~-ca--~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~ 293 (511)
T KOG0628|consen 218 RGDTLRKAIEEDIARGLIPFFVCAT-LGTTSS-CA--FDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEY 293 (511)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEEe-ecCccc-cc--cccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchh
Confidence 446666666542 24455566655 433332 22 245999999999999999999999864222111100001221
Q ss_pred Ccee--eeeccc-----------CCCccccEEEE-EcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 264 PDFL--CLSKGI-----------TGGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 264 ~d~~--~~sK~l-----------~gG~~~ig~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
.|=. ..+|.+ -.| ..+.-.+ +.+-..+.-.. +....+.|..--.+--+.....+-+++.+..++
T Consensus 294 aDSfn~n~hK~~~vnfDCs~lWvkd~-~~~~~~~~vdp~yL~h~~~-~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~ 371 (511)
T KOG0628|consen 294 ADSFNFNPHKWLLVNFDCSPLWVKDG-TKLSRAFNVDPLYLKHAYQ-GSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVEN 371 (511)
T ss_pred hccccCChhheeEEeeeeecceeecC-ceeeeeeecChHhhcchhh-ccCCCccccccccccchhhHHHHHHHHHHhHHH
Confidence 1211 123322 123 2333222 22222211111 011122222111122233334445667776778
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCee--eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC-cEEeec---C-CEE
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE-LLLRPI---G-NTV 401 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G-v~~~~~---~-~~l 401 (430)
+.+++++.. +|.+.++.+ ...+.+. ..+..| +++|.++ ++ ...-+++.+++...| |...|+ + -.|
T Consensus 372 lq~~iR~h~-~La~~fe~lv~~d~~FE~~~~~~lg-LvcFRlk-~~----N~~ne~Ll~~in~~g~i~l~~~~l~gk~vl 444 (511)
T KOG0628|consen 372 LQNYIREHV-RLAKEFETLVRADPRFEIVNKRILG-LVCFRLK-GD----NEINEALLNRLNSSGRIHLVPASLHGKFVL 444 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHhhcCCcceeecccccc-eeEEeec-CC----cHHHHHHHHHHHhcCcEEEEEeeecceEEE
Confidence 888887654 344555544 2222211 122333 3445555 42 222467888887665 555554 2 368
Q ss_pred EEeCCCCC-CHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYIL-NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~-t~e~i~~~~~~l~~~l~~~ 428 (430)
||.++... +++++++.-+.|.+..+++
T Consensus 445 Rf~V~s~~t~~~di~~a~~~I~~~a~~l 472 (511)
T KOG0628|consen 445 RFAVCSPLTNESDIDEAWKIIFEAADEL 472 (511)
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence 98887765 6788999999998887764
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=69.75 Aligned_cols=280 Identities=10% Similarity=0.081 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhhcC-C--CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 77 KPVIKLSEKLSSLTQ-Y--KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~-~--~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
+..++..+.|.+..+ + +--.|+|.+|+|+-+++|+.++.... ....+.-+||...|.|..+...+--... ..|
T Consensus 46 ~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~--~~~~~p~~VVa~aPYY~~Y~~qt~~f~s-~~y- 121 (363)
T PF04864_consen 46 PELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNA--SPSSSPASVVAAAPYYSSYPEQTDFFDS-RLY- 121 (363)
T ss_dssp HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT---TTSSSEEEEE-SS--CHHHHHCCCT-B-TTE-
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCceeEecCCCccchHHHHHhccc-cCc-
Confidence 444444445555554 1 22379999999999999998775431 1222456899989988766433221111 001
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHh-CCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK-NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+.. |..... .. .+....-+++.| .|+.|. + -+ .++
T Consensus 122 ----------~w~G-------------------da~~~~---~~~~~~~~IElVTSP-NNPDG~-l------r~---~V~ 158 (363)
T PF04864_consen 122 ----------KWAG-------------------DASNFK---NSDNPSPYIELVTSP-NNPDGQ-L------RE---AVL 158 (363)
T ss_dssp ----------EEEE-------------------ECCCGT---T-S-CCGEEEEEESS--TTT----------------SS
T ss_pred ----------cccc-------------------cHHhhc---cCCCCCCeEEEEeCC-CCCccc-c------cc---hhc
Confidence 1111 111110 11 135677788887 443332 2 11 134
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcH-HHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+.-+..+|.|=+|=---++. ... ...-|++ |+||.-|-.+.|+|+.+++. ++.+.+.. +...+|.+
T Consensus 159 ~g~~~k~I~D~AYYWPhyTp----I~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~------y~~lnTiG 227 (363)
T PF04864_consen 159 NGSSGKVIHDLAYYWPHYTP----ITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTK------YMELNTIG 227 (363)
T ss_dssp TTTEEEEEEE-TT-STTTS-------S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHH------HHHHHCSS
T ss_pred CCCCcceeeeeeeecccccc----cCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHHHH------HHHHhccc
Confidence 55667789997763111111 111 1234655 67896654338999999875 55555554 55677888
Q ss_pred CCHHHHHHHHHHHHHHhh----c----CHH----HHHHHHHHHHHHHHHchhc-----C-CC----ee-eEeecceEEEE
Q psy14484 310 GNPLACCAALATLEIFNK----D----NIL----QRISQDMKKITKALTSLIT-----H-PK----II-NFRQKGMIWAF 366 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~----~----~~~----~~~~~~~~~l~~~l~~l~~-----~-~~----~~-~~~~~g~~~~~ 366 (430)
.+-=++..++..|+.+-+ + ++. +.++++.++|++.+..-.+ . |. .. ...+...|.++
T Consensus 228 vS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWl 307 (363)
T PF04864_consen 228 VSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWL 307 (363)
T ss_dssp --HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEE
Confidence 877777777777765422 1 243 3455566666666643211 1 11 01 23445678888
Q ss_pred EEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 367 ~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.+. .... ......|++.||+.+.+ ...+|+ ++..++++.+.++++|..
T Consensus 308 kCe-~eed------~DC~~~l~~~~I~tr~G~~fga~~ryVRl--Sml~~~d~Fd~l~~rL~~ 361 (363)
T PF04864_consen 308 KCE-REED------EDCYAVLREAKIITRSGVLFGADSRYVRL--SMLKRDDDFDQLLERLSK 361 (363)
T ss_dssp EES-SCGG------SSHHHHHHCTTEEEEEGGGGTS-TTEEEE--ESSS-HHHHHHHHHHHHC
T ss_pred ecC-Cccc------ccHHHHHHhCCcccCCCCccCCCCCeEEE--eccCCHHHHHHHHHHHHh
Confidence 877 4211 23556677889988875 368888 677899999999999975
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0002 Score=70.35 Aligned_cols=160 Identities=14% Similarity=0.181 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCC-Cccchh
Q psy14484 77 KPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQSFKE 154 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~-~~~~~~ 154 (430)
....+..+..++.+ +.+ ..+++||-|.||..++.+++. ++++ |.++...|-+..-.+.+++ .|.|
T Consensus 70 G~i~eAqe~aA~~f--gAd~tyFvvNGTS~ank~vi~a~~~--------~GD~-VLvdRN~HKSi~~glilaGa~Pvy-- 136 (557)
T COG1982 70 GPIKEAQELAARVF--GADHTYFVVNGTSTANKAVINAVLT--------PGDK-VLVDRNCHKSIHHGLILAGATPVY-- 136 (557)
T ss_pred ccHHHHHHHHHHHh--CCCceEEEECCccHHHHHHHHhhcC--------CCCE-EEecCCccHHHHHHHHHcCCceEE--
Confidence 44557777778888 445 455667777777777777664 4444 5567888887655544444 2322
Q ss_pred hhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCC-eEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNK-IAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
..+..+. +....+ -+.+.+++.+.+++.. ..+++..| +=.|.... +++|.+.+
T Consensus 137 ----------l~p~~np~~gi~gg--------I~~~~~~~~l~~~~~~~k~~vitnp---TYdGv~~n----~~~i~~~~ 191 (557)
T COG1982 137 ----------LEPSRNPLYGIIGG--------IPLETFKEALLAHPDAEKLAVITNP---TYDGVCYN----LRKIVELL 191 (557)
T ss_pred ----------ecCCCCccccccCC--------CCHHHHHHHHHhChhhheeEEEecC---ccceEeec----HHHHHHHH
Confidence 1111111 111111 1678888888877555 66777776 33465555 89999999
Q ss_pred HhcCCEEEEeccccCCCCccc-ccccccCCCCCceeeee--cccCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGK-FFACEHAEIWPDFLCLS--KGITG 275 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~-~~~~~~~~~~~d~~~~s--K~l~g 275 (430)
.+.++++.+||.+. ..+.-. .+.-....-..|+++-| |.+++
T Consensus 192 ~~~~a~v~~deah~-~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~a 236 (557)
T COG1982 192 HHYGAWVLYDEAHP-AHFDFSPMLPESALNGGADFVTQSTHKLLAA 236 (557)
T ss_pred hhcCceEEhhhcCc-ccccccccCcchhhhcCceEEEechhhhhhh
Confidence 99999999999875 322211 11111222345777777 55544
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00011 Score=65.65 Aligned_cols=278 Identities=14% Similarity=0.120 Sum_probs=149.9
Q ss_pred EcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCC
Q psy14484 99 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 178 (430)
Q Consensus 99 ~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
-+-|||.|+..+-..+.... .+..|-+-.|.+..+.......+- . ....+|...... +
T Consensus 104 QslsGTGAl~~~A~Fl~~~~------~~~~VY~SnPTW~nH~~if~~aGf--------~------tv~~Y~yWd~~~--k 161 (410)
T KOG1412|consen 104 QSLSGTGALRIAADFLATFY------NKNTVYVSNPTWENHHAIFEKAGF--------T------TVATYPYWDAEN--K 161 (410)
T ss_pred eeccccchhhhhHHHHHHhc------ccceeEecCCchhHHHHHHHHcCC--------c------eeeeeeeecCCC--c
Confidence 34599999998877554443 566666666666555332221110 0 011122111110 0
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----
Q psy14484 179 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF---- 254 (430)
Q Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~---- 254 (430)
.-|++.+...|...|.....++.-. .+|++| +.|+.|....|.+..++.+.+-.+|-+|.||. .|..
T Consensus 162 ------~~d~e~~Lsdl~~APe~si~iLhaC-AhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~Da 232 (410)
T KOG1412|consen 162 ------CVDLEGFLSDLESAPEGSIIILHAC-AHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADA 232 (410)
T ss_pred ------eecHHHHHHHHhhCCCCcEEeeecc-ccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccH
Confidence 0166666666766555444555555 788898 88999999999999999999999999999993 4431
Q ss_pred ccccc---CCCCCcee--eeecccCC-CccccEE---EEEcHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHH
Q psy14484 255 FACEH---AEIWPDFL--CLSKGITG-GYLPLSL---VMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEI 324 (430)
Q Consensus 255 ~~~~~---~~~~~d~~--~~sK~l~g-G~~~ig~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~ 324 (430)
|+... .+. +=++ +|+|.+|- + -|+|- ++-++.....+.. +-....-++++. ...++..+.+.|..
T Consensus 233 wAiR~fV~~g~-e~fv~QSFaKNfGlYn-eRvGnltvv~~n~a~i~~v~S---Ql~lviR~~~SNPPAyGArIV~kvL~t 307 (410)
T KOG1412|consen 233 WAIRYFVEQGF-ELFVCQSFAKNFGLYN-ERVGNLTVVVNNPAVIAGVKS---QLTLVIRSNWSNPPAYGARIVHKVLST 307 (410)
T ss_pred HHHHHHHhcCC-eEEEEhhhhhhccccc-ccccceEEEecChhHHHHHHH---HHHHHHhhccCCCcchhhHHHHHHhcC
Confidence 22211 121 1123 58997764 3 46663 3334444443332 111122334432 22333344444531
Q ss_pred Hh-hcCHH-------HHHHHHHHHHHHHHHchhcCCC-eee-EeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcE
Q psy14484 325 FN-KDNIL-------QRISQDMKKITKALTSLITHPK-IIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELL 393 (430)
Q Consensus 325 ~~-~~~~~-------~~~~~~~~~l~~~l~~l~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~ 393 (430)
-+ .++|. .++.+.+..|++.|..| ..|+ +.- +...|+|-.--+. ..-.++|.+ +-|+
T Consensus 308 P~lre~W~~sik~MssRI~~MR~aLrd~L~aL-~TPGtWDHI~~QiGMFSyTGLt-----------p~qV~~li~~h~vy 375 (410)
T KOG1412|consen 308 PELREQWIQSIKTMSSRIKKMRTALRDHLVAL-KTPGTWDHITQQIGMFSYTGLT-----------PAQVDHLIENHKVY 375 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcHHHHHhhccceeecCCC-----------HHHHHHHHHhceEE
Confidence 11 13333 45566666677777766 4444 222 2334443222222 123444544 4666
Q ss_pred EeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 394 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 394 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.-+.| |++++ ..+...++...++|.++++.+
T Consensus 376 Ll~~G---RInis-GLN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 376 LLSDG---RINIS-GLNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred EecCC---cEeee-ccccccHHHHHHHHHHHHHhh
Confidence 65554 55545 445567888888888887654
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0014 Score=60.57 Aligned_cols=202 Identities=10% Similarity=0.015 Sum_probs=119.8
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCcc
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYL 278 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~ 278 (430)
+.+-|...+ .....|+..+...+. .. +.++++|-.-.-+++. ..+. +-|++.+| |.+|+.
T Consensus 144 ~~ayv~~~~-NeTi~Gv~v~~~p~~------~~--~~~~v~D~SS~ilsr~---iDvs----k~dviyagaQKnlGpa-- 205 (365)
T COG1932 144 NDAYVHFCW-NETISGVEVPELPDI------GS--DGLLVADASSAILSRP---IDVS----KYDVIYAGAQKNLGPA-- 205 (365)
T ss_pred CccEEEEec-CCcccceEccCCCCC------CC--CceEEEecccHHhcCC---CChh----HcceEEEehhhccCcc--
Confidence 344455555 445567666532221 11 2788999654323221 1111 24778887 899884
Q ss_pred ccEEEEEcHHHHHhhhccCCcc------cccccCCCCCCHH-HHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHHc
Q psy14484 279 PLSLVMTTDKIYNSIYYKNNIN------IFLHSHSYSGNPL-ACCAALATLEIFNK----DNILQRISQDMKKITKALTS 347 (430)
Q Consensus 279 ~ig~~~~~~~~~~~~~~~~~~~------~~~~~~t~~~~~~-~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~~~l~~ 347 (430)
.++.++.++++.+.+.....+. .....++++.+|. +......+++.++. +.+.++.++..+.|.+-+++
T Consensus 206 GltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~ 285 (365)
T COG1932 206 GLTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDK 285 (365)
T ss_pred ceEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999987765410111 1223566665443 44455566776654 34556777788888887765
Q ss_pred hhcC-CCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 348 LITH-PKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 348 l~~~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
-.-+ +.+.. ..+..| +.|.+. ..++...|...+.++|+..-.+ .+.+|.++--++..|+++.+++-++
T Consensus 286 s~fy~~~v~~-~~RS~mnV~f~~~------~~~ld~~fv~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~ 358 (365)
T COG1932 286 SDFYRNLVAK-ANRSRMNVTFTLV------DAELDKGFVAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMD 358 (365)
T ss_pred CCccccccch-hhccceeEEEEcC------cHHHHHHHHHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHH
Confidence 4111 11112 222233 234444 2344567888888888766543 2459999888999999999999998
Q ss_pred HHHHH
Q psy14484 423 QTFNE 427 (430)
Q Consensus 423 ~~l~~ 427 (430)
.+.++
T Consensus 359 ~f~~~ 363 (365)
T COG1932 359 WFEET 363 (365)
T ss_pred HHHHh
Confidence 87654
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00045 Score=64.58 Aligned_cols=316 Identities=13% Similarity=0.121 Sum_probs=155.9
Q ss_pred HHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhh----hcCCCC-CcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 82 LSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWY----NKGFLN-KKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 82 l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~----~~g~~~-~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
+-.++.+..+...+ .-+|++||+-+|..|+.+++.... .+|... .+-|+..+.--|=+.--+....+
T Consensus 146 vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg------- 218 (510)
T KOG0629|consen 146 VLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLG------- 218 (510)
T ss_pred HHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhc-------
Confidence 33444445443443 678999999999999999885321 112111 13344333333322111111111
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC---eEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK---IAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~---~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
+... ..+.++.+.++. -++++||+.|.+...+ +..|-++. ...--|...| |..|.++|
T Consensus 219 ---~gtd-~c~~v~t~e~Gk----------m~~~dLe~kile~k~kg~~Pf~vnaTa-GTTV~GAFDd----L~~iadiC 279 (510)
T KOG0629|consen 219 ---LGTD-HCIKVKTDERGK----------MIPDDLEKKILEAKAKGGVPFFVNATA-GTTVLGAFDD----LNGIADIC 279 (510)
T ss_pred ---cCCc-eeEEecccccCc----------cchHHHHHHHHHHHhcCCCCeEEEecC-CceeeeccCc----HHHHHHHH
Confidence 1111 223344444432 2789999988876322 44444444 3333466666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCC-Cceeeee--cccCCCccccEEEEEcHH-HHHhhhccC-----Cccccc
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIW-PDFLCLS--KGITGGYLPLSLVMTTDK-IYNSIYYKN-----NINIFL 303 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~-~d~~~~s--K~l~gG~~~ig~~~~~~~-~~~~~~~~~-----~~~~~~ 303 (430)
++|+.++++|.+-.|---.....-....|++ .|=++.+ |-+|.. ++.|+.+.+.+ +++...+-. .+..++
T Consensus 280 ~k~~lWmHvDAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gap-lqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y 358 (510)
T KOG0629|consen 280 EKHKLWMHVDAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP-LQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY 358 (510)
T ss_pred HhcCEEEEeecccccccccChhhHhhccCccccCceeecHHHhhcCc-chhhHHHHHHHHHHHhhcccchhhhhccCcee
Confidence 9999999999886541011000001223443 3445544 667666 68888887754 333322200 011111
Q ss_pred ccCCCCCCHHHHHH-HHHHHH---HHh---hcCH---HHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEee--
Q psy14484 304 HSHSYSGNPLACCA-ALATLE---IFN---KDNI---LQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVII-- 370 (430)
Q Consensus 304 ~~~t~~~~~~~~~a-a~~~l~---~~~---~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~-- 370 (430)
..+--+++-..+.. =...+. +++ ..++ .++.-+++++|.++|++-+....+....++- ++..+..+.
T Consensus 359 dvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~l 438 (510)
T KOG0629|consen 359 DVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSL 438 (510)
T ss_pred ecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHh
Confidence 11111222221111 111121 222 2333 4566779999999998753332222222221 111111110
Q ss_pred cC-Cccchh------HHHHHHHHHHHCCcEEe---ec---CCEEE--EeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 371 ED-PEQIET------FSKKFFVAALKNELLLR---PI---GNTVY--LMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 371 ~~-~~~~~~------~a~~~~~~l~~~Gv~~~---~~---~~~lR--~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.. ...++. .+-.+...|.++|-... |. ++..| ++++ +.+.++++.+++.|++.-
T Consensus 439 R~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~-a~~~ad~dflldEIerlg 507 (510)
T KOG0629|consen 439 RGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNP-ALTEADLDFLLDEIERLG 507 (510)
T ss_pred ccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccc-hhhhhhHHHHHHHHHHhc
Confidence 00 000110 12345566788886543 32 24445 4433 779999999999887653
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0041 Score=57.22 Aligned_cols=288 Identities=13% Similarity=0.103 Sum_probs=146.0
Q ss_pred hhcCCCCCe--EEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC-----CCCcchhhhccCCCccchhhhhcc
Q psy14484 88 SLTQYKLGH--CFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS-----YHGETLGALAVTNIQSFKEIYTSL 159 (430)
Q Consensus 88 ~~~~~~~~~--v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~-----yhg~~~~~~~~~~~~~~~~~~~~~ 159 (430)
+.++.+++. |-+-+ ||+-||.++-.++.. +.++|+.++-- -||+......++....
T Consensus 97 eaF~ldp~kWGVNVQp~SGSPANfavYtall~--------Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~Si-------- 160 (477)
T KOG2467|consen 97 EAFGLDPEKWGVNVQPYSGSPANFAVYTALLK--------PHERIMGLDLPSGGHLSHGYQTPTKKISATSI-------- 160 (477)
T ss_pred HHhCCCHHHCceeeccCCCCchhhHHHhhhcC--------CCCeeeeccCCCCCccccccccCCceeeeeee--------
Confidence 456556663 33333 899999988777775 67778766532 2333222222222111
Q ss_pred CCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEE
Q psy14484 160 LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239 (430)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~l 239 (430)
.+...|..-.. +-..-|-|.||+..... +++++|+-. +... +..+ ..+++++|.+.|++|
T Consensus 161 ----yFeSmPYkv~~-------~TG~IDYD~Le~~A~~f--rPk~iiaG~---SaY~-R~~D---YaR~R~Iad~~gA~L 220 (477)
T KOG2467|consen 161 ----YFESMPYKVDP-------STGYIDYDKLEKTATLF--RPKLIIAGT---SAYS-RLID---YARFRKIADKVGAYL 220 (477)
T ss_pred ----ecccCceeeCC-------CCCceehHHHHHHHHhc--CCcEEEecc---ccch-hhcc---HHHHHHHHHhcCcee
Confidence 12222211000 00012667787766543 566777633 2211 2222 689999999999999
Q ss_pred EEecccc-CCCCccc-ccccccCCCCCceeee--ecccCCCccccEEEEEcHHHHHh---------------hhccCCcc
Q psy14484 240 IADEIAV-GCGRTGK-FFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTTDKIYNS---------------IYYKNNIN 300 (430)
Q Consensus 240 i~DEv~~-g~g~~g~-~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~~~~~~~~~~~---------------~~~~~~~~ 300 (430)
++|=+|. |+.-.|. ...|+ ..|++|. -|+|-| -|-|.++.++.+... ++. --.
T Consensus 221 m~DMAHISgLVAA~vipsPFe----y~DiVTTTTHKsLRG--PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINf--aVF 292 (477)
T KOG2467|consen 221 MADMAHISGLVAAGVIPSPFE----YCDIVTTTTHKSLRG--PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINF--AVF 292 (477)
T ss_pred ehhhhhHHHHHhcccCCCccc----ccceeeccccccccC--CcceeEEEeccCCcCCCCCCCcceechhhhhhh--hcc
Confidence 9997764 4422221 12232 2577754 488877 477888887754211 111 001
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccch
Q psy14484 301 IFLHSHSYSGNPLACCAALATLEIFNKDNIL---QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE 377 (430)
Q Consensus 301 ~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 377 (430)
+..++++.+- ..++...+|....++++. +++.++++.|.+.|.+. .+..++.-. ...++.+++. +-.-+ .
T Consensus 293 P~lQGGPHNh---tIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGT-DnHlvLvDLr-~~G~d-G 365 (477)
T KOG2467|consen 293 PGLQGGPHNH---TIAALAVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGT-DNHLVLVDLR-PKGVD-G 365 (477)
T ss_pred ccccCCCCcc---hHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCc-cceEEEEecc-ccCCc-h
Confidence 1222333322 222223345544455544 55666777777777654 333332211 2234556665 32211 1
Q ss_pred hHHHHHHHHH---HHCCcEEee----cCCEEEEeCCCC----CCHHHHHHHHHHHHHHHH
Q psy14484 378 TFSKKFFVAA---LKNELLLRP----IGNTVYLMPPYI----LNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 378 ~~a~~~~~~l---~~~Gv~~~~----~~~~lR~~~~~~----~t~e~i~~~~~~l~~~l~ 426 (430)
..++.+++.+ ..++-+... .++.+|+.-+.- ..++|++++.+-|.++++
T Consensus 366 arvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 366 ARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred HHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 1134444432 222222111 146788764433 357888888888877664
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.033 Score=58.85 Aligned_cols=282 Identities=10% Similarity=0.083 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+..-+++..++++++.+..+.-+..++|.+-+++ .++++++ ++ +++++++ +.+-|..+...+..-.
T Consensus 124 qal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~-~ma~~~~--~~--k~~~~~v-~~~~hP~~~~v~~t~~-------- 189 (954)
T PRK12566 124 EALLNFQQMTIDLTGLDLANASLLDEATAAAEAM-ALAKRVA--KS--KSNRFFV-DEHCHPQTLSVLRTRA-------- 189 (954)
T ss_pred HHHHHHHHHHHHHhCchhhhhhhccchhHHHHHH-HHHHHHh--hc--CCCEEEE-CCCCCHHHHHHHHHhh--------
Confidence 4556788889999965655667778888877744 4444432 11 2445544 5556654433222111
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.+...+++. +++++.+. ++++++++.. ++ ..|.+-. +++|.++++++|
T Consensus 190 ~~~g~~i~~-----------------------~~~~~~~~---~~~~~v~vq~-P~-~~G~i~d----~~~i~~~~h~~g 237 (954)
T PRK12566 190 EGFGFELVV-----------------------DAVDNLAA---HAVFGALLQY-PD-THGEIRD----LRPLIDQLHGQQ 237 (954)
T ss_pred hcCCcEEEE-----------------------cchhhcCC---CCEEEEEEEC-CC-CceEEcc----HHHHHHHHHHcC
Confidence 111111111 23333342 4688888855 44 3454533 899999999999
Q ss_pred CEEEEeccccCCCCcccccccccC-CCCCceee-----eecccCCCccccEEEEEcHHHHHhhhcc---------CC---
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHA-EIWPDFLC-----LSKGITGGYLPLSLVMTTDKIYNSIYYK---------NN--- 298 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~-----~sK~l~gG~~~ig~~~~~~~~~~~~~~~---------~~--- 298 (430)
+++|+--=--.++. +... +...||++ |+=.|+.|+--.|++.+++++...+-.. ++
T Consensus 238 al~~~~~d~laL~l------l~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~ 311 (954)
T PRK12566 238 ALACVAADLLSLLV------LTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTAL 311 (954)
T ss_pred CEEEEEeCHHHHhC------CCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeee
Confidence 98774311000111 1111 23467763 4445555543477788888766544320 00
Q ss_pred ----------cccccccCCCCCCHHHHHHHHHHHH--HHhhcCH---HHHHHHHHHHHHHHHHchhcCCCeeeEeecceE
Q psy14484 299 ----------INIFLHSHSYSGNPLACCAALATLE--IFNKDNI---LQRISQDMKKITKALTSLITHPKIINFRQKGMI 363 (430)
Q Consensus 299 ----------~~~~~~~~t~~~~~~~~~aa~~~l~--~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~ 363 (430)
.|.-.-.+..+.+. ++.|..+++- .+..+++ .+++..++.++.++|.+. ++... ....|
T Consensus 312 ~l~LqtREQHIRReKAtSNICT~q-aL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~-g~~~~----~~~fF 385 (954)
T PRK12566 312 RMALQTREQHIRREKANSNICTAQ-VLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK-GIKRL----NRHFF 385 (954)
T ss_pred ehhhhHHHHHhhhccccchhhHHH-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCccc----cCCcc
Confidence 00000111222222 2222222222 2222333 345666777888888764 22211 11234
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 364 ~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
-.+.+. -+. . +.++.++..+.|+.++.. .+.+.+++.-++|++|++.+++.|.
T Consensus 386 ~~~~v~-~~~---~--~~~~~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 386 DTLTLE-VGG---A--QAAIIESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred ceEEEE-ccC---C--HHHHHHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence 334443 210 1 467888889999988865 4678899999999999999999883
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=58.20 Aligned_cols=185 Identities=10% Similarity=0.042 Sum_probs=105.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCeEEE-cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 76 HKPVIKLSEKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~v~~-~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
+.-++.|.+-.++.++....-|.. .-|||-|+..|+...++ +.+..+...++=--.......+.+.. ..
T Consensus 64 D~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~LR--------pgDell~i~G~PYDTLeevIG~rg~~--~g 133 (416)
T COG4100 64 DLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGILR--------PGDELLYITGSPYDTLEEVIGLRGEG--QG 133 (416)
T ss_pred ccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhccC--------CCCeEEEecCCcchhHHHHhccCCCC--cc
Confidence 345677888888998533332211 24899999999987776 55666655521111111111221110 01
Q ss_pred hhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCc-cc--CChHHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGM-IM--YDSIYLKLVREI 231 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~-~~--~~~~~l~~l~~l 231 (430)
.+.........++...+.. -|.+.++..+. +++++|.+.- +.|- .- .+-+.++++.++
T Consensus 134 SL~dfgi~Y~~v~Lt~~gk------------iD~~~v~~~i~---~~tkli~IQR----S~GY~~RpS~~I~eI~~~i~~ 194 (416)
T COG4100 134 SLKDFGIKYKAVPLTADGK------------IDIQAVKTAIS---DRTKLIGIQR----SKGYAWRPSLSIAEIEEMITF 194 (416)
T ss_pred cHHHhCcceeecccccCCc------------ccHHHHHHhcC---ccceEEEEEe----ccCcCCCCcccHHHHHHHHHH
Confidence 1112222223333332222 28899999986 6788887644 2221 11 223556777777
Q ss_pred HHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHHhhh
Q psy14484 232 CNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYNSIY 294 (430)
Q Consensus 232 ~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~~~~ 294 (430)
.++ -++++.||.+|..|--. .+...+..|++ ++-|..|||.... |++.+++++.+...
T Consensus 195 vk~inpn~ivFVDNCYGEFvE~-----~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 195 VKEINPNVIVFVDNCYGEFVEE-----KEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred HHhcCCCEEEEEeccchhhhhc-----cCccccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 776 46899999999877432 12234456766 5779888875454 47888999987754
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=59.99 Aligned_cols=153 Identities=12% Similarity=0.090 Sum_probs=87.9
Q ss_pred eEEEc--CCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC--CCCC
Q psy14484 96 HCFYG--SDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDS 171 (430)
Q Consensus 96 ~v~~~--~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 171 (430)
++..+ -|||.|.-.+-..+..+. +...|.+++|++-.+.-. +. .-...+.+.. .|..
T Consensus 120 Ri~tvQ~lSGTGaLriga~Fl~~f~------~~~~I~ip~PTWgNh~~i---------f~----~ag~~~~~yrYyd~~t 180 (427)
T KOG1411|consen 120 RIVTVQTLSGTGALRVGAEFLARFY------PSRDIYIPDPTWGNHKNI---------FK----DAGLPVKFYRYYDPKT 180 (427)
T ss_pred ceeEEEeccCcchhhHHHHHHHhhc------cccceeecCCcccccCcc---------cc----ccCcceeeeeeccccc
Confidence 44433 488888888766555543 556777888877443111 11 0001111111 1111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
.. .|.+.+-+.+.+.++.-..++-.. -+|++| +.|+.+..++|.++.++.+.+-++|-+|.|| -.
T Consensus 181 ~g------------ld~~g~ledl~~~p~gs~ilLhaC-aHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aS 245 (427)
T KOG1411|consen 181 RG------------LDFKGMLEDLGEAPEGSIILLHAC-AHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-AS 245 (427)
T ss_pred cc------------cchHHHHHHHhcCCCCcEEEeehh-hcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhccc-cc
Confidence 11 155555445555544433444455 778888 8899999999999999999999999999998 34
Q ss_pred cccc----cccc-CCCCCcee---eeecccCC-CccccEEE
Q psy14484 252 GKFF----ACEH-AEIWPDFL---CLSKGITG-GYLPLSLV 283 (430)
Q Consensus 252 g~~~----~~~~-~~~~~d~~---~~sK~l~g-G~~~ig~~ 283 (430)
|... +.-. ....-++. +|+|.||- | -++|++
T Consensus 246 G~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYg-ERvGa~ 285 (427)
T KOG1411|consen 246 GDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYG-ERVGAL 285 (427)
T ss_pred CCchhhHHHHHHHHHcCCceEeehhhhhhcchhh-hcccee
Confidence 4421 1100 01112222 68898874 4 477754
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=54.95 Aligned_cols=58 Identities=7% Similarity=0.047 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCC
Q psy14484 73 NLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 138 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg 138 (430)
.+..++++++++++.+.++ .++++|++|+|+++|++.++++++. +++.|++.+|.|+|
T Consensus 92 ~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~d--------pGD~VlVp~P~Y~~ 153 (153)
T PLN02994 92 HGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIAD--------PGDAFLVPTPYYAA 153 (153)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHcC--------CCCEEEEeCCCCCC
Confidence 4556788899999988754 4678999999999999999998886 77899999999975
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.056 Score=47.70 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
|++++++++.+.++...+.+..+ .....+-.++-+++|..+|..|+++-|+..+|.
T Consensus 142 dleav~~~iee~g~dcilci~st----tscfapr~pd~leaiaaica~~diphivnnayg 197 (432)
T KOG3843|consen 142 DLEAVEAIIEELGEDCILCIHST----TSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYG 197 (432)
T ss_pred hHHHHHHHHHHhCCceEEEEeec----ccccCCCCCchHHHHHHHHHccCchhhhccccc
Confidence 89999999998755433333222 112234456889999999999999999999874
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=89.60 E-value=26 Score=35.74 Aligned_cols=278 Identities=12% Similarity=0.163 Sum_probs=135.7
Q ss_pred HHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhc
Q psy14484 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS 158 (430)
Q Consensus 79 ~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 158 (430)
...+...+.++.+.+....-+..-||.|-++...+.+.. ++++ ++.+...|..+......... +
T Consensus 165 llNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~-------krkk-~vvd~~~hpqtlsV~~TRa~--------~ 228 (1001)
T KOG2040|consen 165 LLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRIN-------KRKK-FVVDSNCHPQTLSVVKTRAK--------G 228 (1001)
T ss_pred HhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhc-------ccce-EEecCCCCcchhhhhhcccc--------c
Confidence 334555666777767777777888888877655544432 4445 55667777765554432211 1
Q ss_pred cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCE
Q psy14484 159 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~ 238 (430)
+..++... |+.+.... ..++..+++.- +..+| .+.. ..++.+.+++.|.+
T Consensus 229 ~~i~v~~~--------------------~~~~~~~s----~~~v~gvlvQY-P~t~G-~i~d----~~el~~~a~~~~s~ 278 (1001)
T KOG2040|consen 229 FGIKVVVS--------------------DIKEADYS----SKDVSGVLVQY-PDTEG-SVLD----FDELVELAHANGSL 278 (1001)
T ss_pred cceeEEec--------------------CHHHhhcc----ccceeEEEEEc-CCCCC-cccC----HHHHHHHhhccCce
Confidence 11111111 22221111 35688898876 65554 4655 78899999999987
Q ss_pred EEEec-ccc-CCCCcccccccccCCCCCceee-----eecccCCCccc-cEEEEEcHHHHHh------------------
Q psy14484 239 LIADE-IAV-GCGRTGKFFACEHAEIWPDFLC-----LSKGITGGYLP-LSLVMTTDKIYNS------------------ 292 (430)
Q Consensus 239 li~DE-v~~-g~g~~g~~~~~~~~~~~~d~~~-----~sK~l~gG~~~-ig~~~~~~~~~~~------------------ 292 (430)
+++-- -.+ -+-|.. . ++..||.+ |+=.||-|+ | .|++.+++++...
T Consensus 279 vv~atDLLaLtiLrpP-----g--efGaDIavGSsQRFGVPlGYGG-PHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~ 350 (1001)
T KOG2040|consen 279 VVMATDLLALTILRPP-----G--EFGADIAVGSSQRFGVPLGYGG-PHAAFFAVSESLVRMMPGRIIGVTKDALGKEAY 350 (1001)
T ss_pred EEEeehhhHHHccCCh-----h--hcCceeeeccccccCccccCCC-chHHHHHHHHHHHhhCCCceEeeeecccccHHH
Confidence 66531 111 011110 0 11234443 222233221 2 1122222222211
Q ss_pred ---hhccCCcccccccCCCCCCH-HHHHHHHHHH-HHHhhc----CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE
Q psy14484 293 ---IYYKNNINIFLHSHSYSGNP-LACCAALATL-EIFNKD----NILQRISQDMKKITKALTSLITHPKIINFRQKGMI 363 (430)
Q Consensus 293 ---~~~~~~~~~~~~~~t~~~~~-~~~~aa~~~l-~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~ 363 (430)
++. .++.-.....|.+... -++.|-.+++ .++..+ ++.+++......|..+|+... +. +.....|
T Consensus 351 RLALQT-REQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag-he----l~~k~fF 424 (1001)
T KOG2040|consen 351 RLALQT-REQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG-HE----LQHKPFF 424 (1001)
T ss_pred HHHHHH-HHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc-hh----hcccccc
Confidence 111 0000000112222211 1222222222 233333 334555556666667776541 11 1111122
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 364 ~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
-.+... -+ + .+.++..+..++++.++-. .+.+-+++.-+.+++|++.++..+.
T Consensus 425 DTLkI~-~~---~--s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 425 DTLKIR-CG---C--SAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN 478 (1001)
T ss_pred ceEEEE-ec---C--cHHHHHHHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence 222222 11 1 1467888888888877654 4677888888999999999998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 3du4_A | 448 | Crystal Structure Of 7-Keto-8-Aminopelargonic Acid | 7e-76 | ||
| 3dod_A | 448 | Crystal Structure Of Plp Bound 7,8-diaminopelargoni | 8e-76 | ||
| 1qj3_A | 429 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 9e-66 | ||
| 1dty_A | 429 | Crystal Structure Of Adenosylmethionine-8-Amino-7-O | 1e-65 | ||
| 1s0a_A | 429 | Crystal Structure Of The Y17f Mutant Of 7,8- Diamin | 3e-65 | ||
| 1s07_A | 429 | Crystal Structure Of The R253a Mutant Of 7,8-Diamin | 6e-65 | ||
| 1mgv_A | 429 | Crystal Structure Of The R391a Mutant Of 7,8-Diamin | 6e-65 | ||
| 1s08_A | 429 | Crystal Structure Of The D147n Mutant Of 7,8- Diami | 8e-65 | ||
| 1s09_A | 429 | Crystal Structure Of The Y144f Mutant Of 7,8- Diami | 8e-65 | ||
| 1s06_A | 429 | Crystal Structure Of The R253k Mutant Of 7,8- Diami | 1e-64 | ||
| 3tft_A | 457 | Crystal Structure Of 7,8-Diaminopelargonic Acid Syn | 9e-62 | ||
| 3bv0_A | 437 | Crystal Structure Of Plp Bound 7,8-Diaminopelargoni | 5e-61 | ||
| 3lv2_A | 462 | Crystal Structure Of Mycobacterium Tuberculosis 7,8 | 8e-61 | ||
| 3hmu_A | 472 | Crystal Structure Of A Class Iii Aminotransferase F | 2e-41 | ||
| 3i5t_A | 476 | Crystal Structure Of Aminotransferase Prk07036 From | 6e-39 | ||
| 4a6r_A | 459 | Crystal Structure Of The Omega Transaminase From Ch | 2e-38 | ||
| 4grx_A | 465 | Structure Of An Omega-Aminotransferase From Paracoc | 2e-38 | ||
| 3n5m_A | 452 | Crystals Structure Of A Bacillus Anthracis Aminotra | 1e-37 | ||
| 3nui_A | 478 | Crystal Structure Of Omega-Transferase From Vibrio | 2e-37 | ||
| 3a8u_X | 449 | Crystal Structure Of Omega-Amino Acid:pyruvate Amin | 4e-37 | ||
| 4e3q_A | 473 | Pmp-Bound Form Of Aminotransferase Crystal Structur | 5e-35 | ||
| 4e3r_A | 473 | Plp-Bound Aminotransferase Mutant Crystal Structure | 1e-34 | ||
| 2eh6_A | 375 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-34 | ||
| 3nx3_A | 395 | Crystal Structure Of Acetylornithine Aminotransfera | 4e-33 | ||
| 3i4j_A | 430 | Crystal Structure Of Aminotransferase, Class Iii Fr | 3e-32 | ||
| 2e54_A | 385 | Crystal Structure Of Acetylornithine Aminotransfera | 6e-32 | ||
| 3ruy_A | 392 | Crystal Structure Of The Ornithine-Oxo Acid Transam | 2e-31 | ||
| 2ord_A | 397 | Crystal Structure Of Acetylornithine Aminotransfera | 3e-31 | ||
| 1vef_A | 395 | Acetylornithine Aminotransferase From Thermus Therm | 5e-31 | ||
| 4adb_A | 406 | Structural And Functional Study Of Succinyl-ornithi | 7e-30 | ||
| 1szk_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 3e-29 | ||
| 1szs_A | 426 | The Structure Of Gamma-aminobutyrate Aminotransfera | 3e-29 | ||
| 1sf2_A | 426 | Structure Of E. Coli Gamma-Aminobutyrate Aminotrans | 5e-29 | ||
| 1szu_A | 426 | The Structure Of Gamma-Aminobutyrate Aminotransfera | 2e-28 | ||
| 2pb0_A | 420 | Structure Of Biosynthetic N-Acetylornithine Aminotr | 6e-28 | ||
| 4a0g_A | 831 | Structure Of Bifunctional Dapa Aminotransferase-Dtb | 3e-27 | ||
| 2can_A | 402 | Human Ornithine Aminotransferase Complexed With L-C | 3e-27 | ||
| 3q8n_A | 453 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 4e-27 | ||
| 1oat_A | 439 | Ornithine Aminotransferase Length = 439 | 5e-27 | ||
| 2byj_A | 439 | Ornithine Aminotransferase Mutant Y85i Length = 439 | 2e-26 | ||
| 2byl_A | 439 | Structure Of Ornithine Aminotransferase Triple Muta | 4e-26 | ||
| 3oks_A | 451 | Crystal Structure Of 4-Aminobutyrate Transaminase F | 8e-26 | ||
| 1d7r_A | 433 | Crystal Structure Of The Complex Of 2,2-Dialkylglyc | 1e-25 | ||
| 1dgd_A | 432 | An Alkali Metal Ion Size-Dependent Switch In The Ac | 1e-25 | ||
| 1m0n_A | 433 | Structure Of Dialkylglycine Decarboxylase Complexed | 1e-25 | ||
| 1z3z_A | 431 | The Crystal Structure Of A Dgd Mutant: Q52a Length | 1e-25 | ||
| 2eo5_A | 419 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 4e-24 | ||
| 3fcr_A | 459 | Crystal Structure Of Putative Aminotransferase (Yp_ | 7e-24 | ||
| 1z7d_A | 433 | Ornithine Aminotransferase Py00104 From Plasmodium | 8e-24 | ||
| 3lg0_A | 422 | Structure Of Plasmodium Falciparum Ornithine Delta- | 2e-23 | ||
| 3r4t_A | 467 | Crystal Structure Of 4-Aminobutyrate Aminotransfera | 4e-23 | ||
| 4a0f_A | 831 | Structure Of Selenomethionine Substituted Bifunctio | 2e-22 | ||
| 3gju_A | 459 | Crystal Structure Of A Putative Aminotransferase (M | 6e-22 | ||
| 4ffc_A | 453 | Crystal Structure Of A 4-Aminobutyrate Aminotransfe | 5e-21 | ||
| 3dxw_A | 452 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 9e-17 | ||
| 2zuk_A | 439 | The Crystal Structure Of Alpha-Amino-Epsilon-Caprol | 9e-17 | ||
| 2gsa_A | 432 | Crystal Structure Of Glutamate-1-Semialdehyde Amino | 3e-15 | ||
| 2hoy_A | 432 | Inter-Subunit Signaling In Gsam Length = 432 | 5e-15 | ||
| 3fqa_A | 427 | Gabaculien Complex Of Gabaculine Resistant Gsam Ver | 5e-15 | ||
| 3fq7_A | 427 | Gabaculine Complex Of Gsam Length = 427 | 5e-15 | ||
| 3fq8_A | 427 | M248i Mutant Of Gsam Length = 427 | 6e-15 | ||
| 2cfb_A | 411 | Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm | 3e-13 | ||
| 4atp_A | 456 | Structure Of Gaba-Transaminase A1r958 From Arthroba | 6e-13 | ||
| 2jjh_A | 449 | E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | 1e-12 | ||
| 2jje_A | 449 | Crystal Structure Of T330s Mutant Of Rv3290c From M | 2e-12 | ||
| 2cin_A | 449 | Lysine Aminotransferase From M. Tuberculosis In The | 4e-12 | ||
| 2jjf_A | 449 | N328a Mutant Of M. Tuberculosis Rv3290c Length = 44 | 6e-12 | ||
| 2e7u_A | 424 | Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A | 2e-11 | ||
| 3bs8_A | 438 | Crystal Structure Of Glutamate 1-Semialdehyde Amino | 3e-10 | ||
| 1ohv_A | 472 | 4-aminobutyrate-aminotransferase From Pig Length = | 1e-09 | ||
| 3k28_A | 429 | Crystal Structure Of A Glutamate-1-Semialdehyde Ami | 7e-09 | ||
| 4e77_A | 429 | 2.0a Crystal Structure Of A Glutamate-1-Semialdehyd | 5e-08 | ||
| 3l44_A | 434 | Crystal Structure Of Bacillus Anthracis Heml-1, Glu | 3e-05 | ||
| 4ao9_A | 454 | Biochemical Properties And Crystal Structure Of A N | 1e-04 |
| >pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448 | Back alignment and structure |
|
| >pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429 | Back alignment and structure |
|
| >pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429 | Back alignment and structure |
|
| >pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437 | Back alignment and structure |
|
| >pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462 | Back alignment and structure |
|
| >pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472 | Back alignment and structure |
|
| >pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476 | Back alignment and structure |
|
| >pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459 | Back alignment and structure |
|
| >pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465 | Back alignment and structure |
|
| >pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452 | Back alignment and structure |
|
| >pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478 | Back alignment and structure |
|
| >pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449 | Back alignment and structure |
|
| >pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473 | Back alignment and structure |
|
| >pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375 | Back alignment and structure |
|
| >pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395 | Back alignment and structure |
|
| >pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430 | Back alignment and structure |
|
| >pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385 | Back alignment and structure |
|
| >pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392 | Back alignment and structure |
|
| >pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395 | Back alignment and structure |
|
| >pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406 | Back alignment and structure |
|
| >pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426 | Back alignment and structure |
|
| >pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426 | Back alignment and structure |
|
| >pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426 | Back alignment and structure |
|
| >pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426 | Back alignment and structure |
|
| >pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420 | Back alignment and structure |
|
| >pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402 | Back alignment and structure |
|
| >pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453 | Back alignment and structure |
|
| >pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439 | Back alignment and structure |
|
| >pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439 | Back alignment and structure |
|
| >pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439 | Back alignment and structure |
|
| >pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451 | Back alignment and structure |
|
| >pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433 | Back alignment and structure |
|
| >pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432 | Back alignment and structure |
|
| >pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433 | Back alignment and structure |
|
| >pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431 | Back alignment and structure |
|
| >pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419 | Back alignment and structure |
|
| >pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433 | Back alignment and structure |
|
| >pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422 | Back alignment and structure |
|
| >pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467 | Back alignment and structure |
|
| >pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831 | Back alignment and structure |
|
| >pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453 | Back alignment and structure |
|
| >pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452 | Back alignment and structure |
|
| >pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439 | Back alignment and structure |
|
| >pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432 | Back alignment and structure |
|
| >pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432 | Back alignment and structure |
|
| >pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427 | Back alignment and structure |
|
| >pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427 | Back alignment and structure |
|
| >pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411 | Back alignment and structure |
|
| >pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456 | Back alignment and structure |
|
| >pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449 | Back alignment and structure |
|
| >pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449 | Back alignment and structure |
|
| >pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449 | Back alignment and structure |
|
| >pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424 | Back alignment and structure |
|
| >pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438 | Back alignment and structure |
|
| >pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472 | Back alignment and structure |
|
| >pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429 | Back alignment and structure |
|
| >pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429 | Back alignment and structure |
|
| >pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434 | Back alignment and structure |
|
| >pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429 | Back alignment and structure |
|---|
Score = 575 bits (1484), Expect = 0.0
Identities = 142/415 (34%), Positives = 221/415 (53%), Gaps = 18/415 (4%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ S + LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +
Sbjct: 27 YPVVSAEGCE---LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI 83
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH P I+L KL ++T L F G+ AVEVA+KM+ YW KG +++F+ +N
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRN 142
Query: 135 SYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193
YHG+T GA++V + + ++ L + P SR E +
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM------DGEWDERDMVGFAR 196
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
L+ + ++IAA+IIEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK
Sbjct: 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK 256
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FACEHAEI PD LCL K +TGG + LS +TT ++ +I F+H ++ GNPL
Sbjct: 257 LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPL 315
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP 373
AC AA A+L I + Q+++ ++ + L + + R G I +
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 374 EQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 376 ------MAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448 | Back alignment and structure |
|---|
Score = 575 bits (1485), Expect = 0.0
Identities = 155/430 (36%), Positives = 239/430 (55%), Gaps = 12/430 (2%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
K N L+I S + D++GK Y D SS W+N+ GH ++ A+K QL K+
Sbjct: 21 KDYDENPLIIESGTGIK---VKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA 77
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
H L +T+ P +L+E L ++ KL FY GA A+E+ALKM+F YW N G K+
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187
KFI ++N YHG+T+GA++V +I+ F +Y L+ ++Y P G+ +C
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCL 197
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+L LL+++H +IAA+ IE +VQ A GMI+ YL VRE+C Y++ +I DE+A G
Sbjct: 198 R-ELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATG 256
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSH 306
GRTGK FACEH + PD + KGITGGYLP+++ T+ IY + Y N+ F H H
Sbjct: 257 FGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGH 316
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
SY+GN L C AL L +F +NI++++++ KK+ L L P + + RQ G +
Sbjct: 317 SYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGA 376
Query: 367 DVIIEDPEQIETFS------KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+ ++ E E + K + + +L RP+G+ + +PP E+ M +
Sbjct: 377 E-LVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAI 435
Query: 421 IFQTFNEVIT 430
+ Q +EV +
Sbjct: 436 MKQAIHEVTS 445
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457 | Back alignment and structure |
|---|
Score = 574 bits (1483), Expect = 0.0
Identities = 129/422 (30%), Positives = 209/422 (49%), Gaps = 18/422 (4%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
+++ + +V + +W + D LDA+SSWW + GH + +++AL QL +
Sbjct: 49 GREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN 108
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
HVM LTH+P +L++ L +T L F+ G+ +VEVA KM+ YW +G K+
Sbjct: 109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR 168
Query: 128 KFICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186
+ + + YHG+T A+++ + ++T +L
Sbjct: 169 RLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDY----------DPA 218
Query: 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
E L ++ ++AA+++EP+VQ AGGM +D YL +R+IC Y + LI DEIA
Sbjct: 219 YSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306
G GRTG FA +HA + PD +C+ K +TGGYL L+ + T + ++I +H
Sbjct: 279 GFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA-GAAGALMHGP 337
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
++ NPLAC ++A++E+ + RI++ +T L + P + + R G I
Sbjct: 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVI 397
Query: 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + P AAL + LRP N VY MPPYI EI +TSA+ +
Sbjct: 398 E--CDRPVD----LAVATPAALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVEVAR 451
Query: 427 EV 428
V
Sbjct: 452 LV 453
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831 | Back alignment and structure |
|---|
Score = 511 bits (1317), Expect = e-175
Identities = 95/453 (20%), Positives = 185/453 (40%), Gaps = 54/453 (11%)
Query: 30 DVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88
+ S + DA +SWW + + + + + + HVM ++P +K +E L
Sbjct: 376 NSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLD 435
Query: 89 LT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN---------KKKFICLQNSYHG 138
+ ++ +G++A+E+ALKM+F + K I L+ SYHG
Sbjct: 436 GVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHG 495
Query: 139 ETLGALAVTNIQSFKEIYTSLL----------------NKTYIITTPDSRNINKGNSANE 182
+TLGA+ + N ++ I+ P+S +
Sbjct: 496 DTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTF 555
Query: 183 IARCAIFDL--------------------EILLKKNHNKIAAIIIEPLVQCAGGMIMYDS 222
+R IFD E + + A+IIEP++ AGGM M D
Sbjct: 556 TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDP 615
Query: 223 IYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 282
++ +++ C N I +I DE+ G R G E PD C +K +TGG +PL++
Sbjct: 616 LFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAV 675
Query: 283 VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMK 339
+ TD +++S + + LH HSYS + + C A ++ F + ++
Sbjct: 676 TLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLR 735
Query: 340 KI--TKALTSLITHPKIINFRQKGMIWAFDV--IIEDPEQIETFSKKFFVAALKNELLLR 395
++ + + + +H + G ++A ++ + ++K + ++ + R
Sbjct: 736 ELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR 795
Query: 396 PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
P+GN +YLM + + + + +++ E
Sbjct: 796 PLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-141
Identities = 121/428 (28%), Positives = 197/428 (46%), Gaps = 22/428 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
V + W + D+ GKRYLD +S W G+ + +A QL L + +S
Sbjct: 33 TVGAKAEGCW---VEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS-Q 88
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+H+P IKL+EKL+ F+ + G+ A E A K++ Y+ KG ++ KF+
Sbjct: 89 SHEPAIKLAEKLNEWLG-GEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYR 147
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE- 192
YHG T+ +A T + Y + +T PD R C +++
Sbjct: 148 GYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK-EVDR 206
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
++ + IAA I+EP + GG++M Y+K V E C + LI+DE+ G GRTG
Sbjct: 207 VMTWELSETIAAFIMEP-IITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG 265
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
K F + ++ PD + ++KGIT YLPLS +IY + K F H +++ GNP
Sbjct: 266 KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNP 325
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE 371
AC AL LEI +N+++R +Q + + L I HP + + R KG++ + ++
Sbjct: 326 AACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE-LVN 384
Query: 372 DPEQIETF----SKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSA 420
D E E A + L++ G N + L PP +++ EI +
Sbjct: 385 DKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGT 444
Query: 421 IFQTFNEV 428
+ +
Sbjct: 445 LKTAMERI 452
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449 | Back alignment and structure |
|---|
Score = 389 bits (1001), Expect = e-133
Identities = 107/422 (25%), Positives = 194/422 (45%), Gaps = 10/422 (2%)
Query: 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML 71
+ +I + + SW L+D G++ D++S W GH+ I +A+ QL+ L++
Sbjct: 31 RDPRLIVAAEGSW---LVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPG 87
Query: 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131
H +L+EK++ LT L H F+ G+ A+KM YW KG K K I
Sbjct: 88 FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIG 147
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFD 190
YHG + ++ + ++++ + + N E +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 191 LE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
L ++ + + IAA+ +EP + + G+++ YLK REICN +NI L+ DE+ G G
Sbjct: 208 LLKLIELHDASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY---YKNNINIFLHSH 306
RTG F + + PD +C++K +T G +P+ V+ + +IY + F H +
Sbjct: 267 RTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
+YS +P+AC A LA L + K+N++Q +++ KAL + +I+ R G+ A
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAI 386
Query: 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
I + +A K +R G+T+ P + ++ + A+ + N
Sbjct: 387 Q-IAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLN 445
Query: 427 EV 428
++
Sbjct: 446 KL 447
|
| >3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478 | Back alignment and structure |
|---|
Score = 381 bits (982), Expect = e-130
Identities = 104/429 (24%), Positives = 194/429 (45%), Gaps = 16/429 (3%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-H 68
+V+ + + ++DV+G+RYLDA S W + G + + A K Q + +
Sbjct: 40 HQRGTVVVTHGEGPY---IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY 96
Query: 69 VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128
+ LSEKL ++ + G FY + G+ A + +KM + +G K+K
Sbjct: 97 HAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRK 156
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA 187
+ N+YHG T + ++T + ++ L +T P R +G + +
Sbjct: 157 ILTRWNAYHGVTAVSASMTGK-PYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL 215
Query: 188 IFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+LE + ++ + IA EP V AGG+I Y + + I Y+I +I+DE+
Sbjct: 216 ARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 274
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHS 305
G GRTG + C + PD + SK +T G+ P+ V+ ++ + I F H
Sbjct: 275 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 334
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
+ SG+P+ C AL +++ + + + + + + + L + P I +R G +WA
Sbjct: 335 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 394
Query: 366 FDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+ ++D F S++ L+ RP+G +V L PP+IL + ++ M
Sbjct: 395 LE-AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFD 453
Query: 420 AIFQTFNEV 428
+ + ++V
Sbjct: 454 KLEKALDKV 462
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-121
Identities = 90/441 (20%), Positives = 183/441 (41%), Gaps = 18/441 (4%)
Query: 1 MNNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALK 60
++ + S ++ + + D +G++ +DA + + G+ I A+
Sbjct: 21 STHMGTHARGESPTRIMAGGEGVT---VWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIA 77
Query: 61 NQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 119
Q L + + I L++ + + ++G G+ A E +K+ ++Y
Sbjct: 78 TQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNN 137
Query: 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGN 178
G KKK I YHG + ++T + F + P R ++
Sbjct: 138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSM 197
Query: 179 SANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237
S + ++ LE ++L + IAA I EP + GG++ + Y + ++ + Y++
Sbjct: 198 SEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYDV 256
Query: 238 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YK 296
L+ADE+ G GR G F +H I PD + ++KG+T Y PLS V+ D+++ +
Sbjct: 257 LLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGS 316
Query: 297 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKII 355
+ + H +YS +P+ A +A LE+ ++ +++ + L ++ H +
Sbjct: 317 DKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVG 376
Query: 356 NFRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPI--GNTVYLMPPY 407
R GM+ A + + D + F + A + ++ R + G+ + PP
Sbjct: 377 EVRGDGMLAAVE-FVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPL 435
Query: 408 ILNKNEIQHMTSAIFQTFNEV 428
L + + + S V
Sbjct: 436 CLTREQADIVVSKTADAVKSV 456
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-112
Identities = 105/411 (25%), Positives = 186/411 (45%), Gaps = 15/411 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKL 86
L D G + +D ++ W G+ +A + Q+ +L TH V++LS L
Sbjct: 44 LWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLL 103
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ +T FY + G+ +V+ ++M YW +G KK I N YHG T+G ++
Sbjct: 104 AEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASL 163
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 205
++ E + I P K + +E A LE +L+ +K+AA
Sbjct: 164 GGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAF 223
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
+ EP +Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 224 VGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD 282
Query: 266 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325
+KG++ GYLP+ V ++ + F H +YSG+P+ A A +
Sbjct: 283 LFTAAKGLSSGYLPIGAVFVGKRVAEGL---IAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 326 NKDNILQRISQDM-KKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 379
+ I+QR+ D+ + K + + + R GM+ AF ++++ + E F
Sbjct: 340 RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFT-LVKNKAKRELFPDFG 398
Query: 380 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+N L++R G+ + PP ++ + E+ M + + E
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-111
Identities = 105/411 (25%), Positives = 193/411 (46%), Gaps = 14/411 (3%)
Query: 28 LIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
+ G+R +D + W + G+ I A+ +Q L + + P +L+EK+
Sbjct: 48 VHTEDGRRLIDGPAGMWCAQV-GYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++LT L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 205
T + ++ +++P+ R+ S + + E + + IAA
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAF 225
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWP 264
+ EP + +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E + P
Sbjct: 226 LAEP-ILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLACCAALATLE 323
D + +KG+T GY+PL + ++ + I +N F + ++YS P+AC AALA +E
Sbjct: 285 DIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE 344
Query: 324 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 379
+ ++ I+ + + AL SL P + R G++ + DP + +
Sbjct: 345 LMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQ-CLLDPTRADGTAEDK 403
Query: 380 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ K + L++RP+G+ + PP I+++ +I M + + Q EV
Sbjct: 404 AFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430 | Back alignment and structure |
|---|
Score = 330 bits (849), Expect = e-110
Identities = 107/445 (24%), Positives = 196/445 (44%), Gaps = 32/445 (7%)
Query: 1 MNNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALK 60
M+N+ Y K V + + L D +G+RYLD S V GH + + + +
Sbjct: 1 MSNVFYRSSKP--YPVAVRGEGVF---LYDDAGRRYLDGSSGALVANIGHGRAEVGERMA 55
Query: 61 NQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN 120
Q +L V S + + + + +L+ + S G+ A E A+K++ Y
Sbjct: 56 AQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVE 115
Query: 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 180
+G + K I SYHG +LG+LA + + + +E+YT L+ P + A
Sbjct: 116 RGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK------PDPA 169
Query: 181 NEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239
A A L +L ++ +AA + EP+V + + Y + VR+IC+ I
Sbjct: 170 RNGAEDAE-GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIF 228
Query: 240 IADEIAVGCGRTGKFFACEHAE-IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 298
IADE+ G GR G A + PD L KG+ GY PL+ ++ ++Y ++
Sbjct: 229 IADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETV--MGG 286
Query: 299 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINF 357
F+H +Y+G+P++ A L+ L+I ++++ + ++ L +L P+++
Sbjct: 287 SGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV 346
Query: 358 RQKGMIWAFDVIIEDPEQIETF-----SKKFFVAALKNELLLRP--------IGNTVYLM 404
R G++ + D + F + + AALK L+ P G+ + L
Sbjct: 347 RGTGLLLGVVL--GDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLG 404
Query: 405 PPYILNKNEIQHMTSAIFQTFNEVI 429
PP + E+ + + + +V+
Sbjct: 405 PPLSITAAEVDGLLALLAGALEDVL 429
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-110
Identities = 113/429 (26%), Positives = 192/429 (44%), Gaps = 20/429 (4%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
VI + W L D G+ LDA++ W G+ + + Q+ +L +
Sbjct: 34 GEEGTRVITRARGVW---LNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90
Query: 70 -MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128
TH P I L++KL+ L L H F+ G+ A + ++M YW NKG K
Sbjct: 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTV 150
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188
I +N+YHG T+ + A+ + + + +I + A
Sbjct: 151 IISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARAR 210
Query: 189 FDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+LE +L+ N++AA I EP VQ AGG+I+ Y ++ IC+ Y+I LIADE+ G
Sbjct: 211 -ELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 307
GRTG +F + I P + ++KG++ GY P+ + D++ + I + F H ++
Sbjct: 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI----GKDEFNHGYT 324
Query: 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKI-TKALTSLITHPKIINFRQKGMIWAF 366
YSG+P+A AL L I ++NIL + + +L HP + + GM+ +
Sbjct: 325 YSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASI 384
Query: 367 DVIIEDPEQIETF-------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+ + F N L++R +G+ + + PP ++ EI M
Sbjct: 385 A-LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFV 443
Query: 420 AIFQTFNEV 428
I ++ +E
Sbjct: 444 RIRKSLDEA 452
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 4e-96
Identities = 97/426 (22%), Positives = 185/426 (43%), Gaps = 30/426 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H+ S +
Sbjct: 27 MIIERAKGSFVY---DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEM 82
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K + +
Sbjct: 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQ 136
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T + ++ ++ I P + R + N A + + ++
Sbjct: 137 SWHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 195
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ +AA I EP + +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 196 IDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 254
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FAC+ + PD L LSK + G PL+ ++T+ I + +L ++ +PL
Sbjct: 255 MFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELG----YLFYTTHVSDPL 309
Query: 314 ACCAALATLEIFNKDNILQRISQDM-KKITKALTSLI-THPKIINFRQKGMIWAFDVIIE 371
L L++ +D ++ R + M ++ + L L+ I + R +G++ + I++
Sbjct: 310 PAAVGLRVLDVVQRDGLVAR-ANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE-IVK 367
Query: 372 DPEQIE---TFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQ 423
D E K + L + + G + PP ++++EI S + Q
Sbjct: 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 427
Query: 424 TFNEVI 429
+
Sbjct: 428 AIERAL 433
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451 | Back alignment and structure |
|---|
Score = 268 bits (688), Expect = 5e-86
Identities = 103/425 (24%), Positives = 179/425 (42%), Gaps = 31/425 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ DV G R +D S V G+S + +A+++Q+ H
Sbjct: 45 VYAVRAGGGIVE---DVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVT 101
Query: 75 THKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ + + E+L+ LT + + G+ AVE A+K++ + +K +
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA------RSHTHKPAVVAFD 155
Query: 134 NSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDL 191
++YHG T +A+T + +K+ + + Y R+ G A
Sbjct: 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215
Query: 192 EILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
++ K + +AA++IEP +Q GG I+ +L + + C ++ IADE+ G
Sbjct: 216 ITVIDKQIGADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTG FACEH I PD + +KGI GG LPLS V +I +S + +Y
Sbjct: 275 RTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVSG------LGGTYG 327
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDV 368
GNP+AC AALAT+E + ++ R Q K + L L +I + R +G + A +
Sbjct: 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAME- 386
Query: 369 IIEDPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
+ E +K A +++ G N V +PP + + + +
Sbjct: 387 -LVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLE 445
Query: 423 QTFNE 427
+
Sbjct: 446 EVLRG 450
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 6e-85
Identities = 113/424 (26%), Positives = 190/424 (44%), Gaps = 34/424 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ +N W DV G+ YLD V GH + + A++ QL KL H L
Sbjct: 25 IFADRAENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVL 81
Query: 75 THKPVIKLSEKLSSLTQYKLGHC-FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++P ++L E ++ + G+ AVE A+K++ + I
Sbjct: 82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA------TKRSGTIAFS 135
Query: 134 NSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDL 191
+YHG T LA+T + + + Y P I++ ++ I R IF
Sbjct: 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKN 193
Query: 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
+ IAAI+IEP VQ GG +++ +R +C+ + I LIADE+ G GRT
Sbjct: 194 DA----APEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT 248
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 311
G FA E + PD +K I GG PL+ V ++ +++ +Y+GN
Sbjct: 249 GTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGN 301
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVII 370
P+AC AAL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + +
Sbjct: 302 PIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LF 360
Query: 371 EDPEQIE---TFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQT 424
ED + + + + A L+L P N + ++ P + +I+ I Q
Sbjct: 361 EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC 420
Query: 425 FNEV 428
F+E
Sbjct: 421 FDEA 424
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439 | Back alignment and structure |
|---|
Score = 264 bits (676), Expect = 2e-84
Identities = 95/426 (22%), Positives = 175/426 (41%), Gaps = 39/426 (9%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
L I + + LI+ +G+ +D +W G+ + I A+ + +
Sbjct: 27 LAISGGRGAR---LIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSA 83
Query: 75 THKPVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ P + L+E+L + ++G G+ A E A + + I
Sbjct: 84 SNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI------VKATGRSGVIAFA 137
Query: 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE 192
+YHG T+G++A + + + ++ PD R + + I E
Sbjct: 138 GAYHGCTVGSMAFSGHSVQA--DAAKADGLILLPYPDPYRPYRNDPTGDAILT---LLTE 192
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L I A IEP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G
Sbjct: 193 KLAAVPAGSIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG 251
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-SHS--YS 309
+ EH PD L L KG+ GG LPLS V+ +I +
Sbjct: 252 RLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDC----------ASAFAMQTLH 300
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDV 368
GNP++ A LA LE ++D++ + + + L+ L HP I + R +G+ +
Sbjct: 301 GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGME- 359
Query: 369 IIEDPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
++ D + E + K A + L++ +G N + PP + + +I +
Sbjct: 360 LVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLD 419
Query: 423 QTFNEV 428
+ F+E+
Sbjct: 420 RAFSEL 425
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 3e-84
Identities = 103/423 (24%), Positives = 179/423 (42%), Gaps = 30/423 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ D G ++D + V G S+ + A+ +Q H
Sbjct: 48 VYAVDADGGVIV---DADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVT 104
Query: 75 THKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ ++++E L++LT + GA AVE A+K++ + + +
Sbjct: 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA------RLATGRPAVVAFD 158
Query: 134 NSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
N+YHG T +A+T +K + + Y + G + E AR AI +E
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIE 218
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
+ +AAIIIEP +Q GG I+ +L + + + IADE+ G RTG
Sbjct: 219 TQI--GAQSLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG 275
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
+FA EH I PD + ++KGI GG +PLS V ++ +++Y +Y GNP
Sbjct: 276 AWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAGG------LGGTYGGNP 328
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE 371
+ C AA+A L + + ++ R +T L++L I R +G + A + I
Sbjct: 329 VTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIE--IV 386
Query: 372 DPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTF 425
P +E +K AL +L+ G N + L+PP ++ + + +A+
Sbjct: 387 KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
Query: 426 NEV 428
Sbjct: 447 RAK 449
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 2e-82
Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 39/405 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D GK Y+D V GH + + +ALK+Q L H SN+ T++P ++L KL
Sbjct: 51 VWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPALRLGRKL 108
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
T + + G A E A K++ HY + K K I N++HG +L ++V
Sbjct: 109 IDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSV 166
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
+ + + D ++ DL + + A++
Sbjct: 167 GGQPKYSDGFGPKP--------ADIIHVPFN------------DLHAVKAVMDDHTCAVV 206
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H + PD
Sbjct: 207 VEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDI 265
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
L +K + GG P+S ++TT +I ++ + + H +Y GNPLAC A A +I N
Sbjct: 266 LTSAKALGGG-FPVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAGAAFDIIN 318
Query: 327 KDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 385
+LQ I ++ + L ++ + R G++ E + + ++ F
Sbjct: 319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----AELKPKYKGRARDFLY 374
Query: 386 AALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
A + +++ G + + P ++ + +I Q +V+
Sbjct: 375 AGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV 419
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 2e-82
Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 38/426 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM----LSNLTH 76
S+ I G+RYLD + + G + + + ++ + S++
Sbjct: 43 GGSYLVDAIT--GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYS 100
Query: 77 KPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLN------KKKF 129
+ + E + + L H F+ GA AVE ALK +F + + +
Sbjct: 101 VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQV 160
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
+ L+ ++HG + L++TN + + I P R + + A+
Sbjct: 161 LHLRGAFHGRSGYTLSLTNTKPTITARFPKFD-WPRIDAPYMRPGLDEPAMAALEAEALR 219
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
+ + IA + EP +Q GG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 220 QARAAFETRPHDIACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL----HS 305
TG +A + ++ PD + K + + N+F +
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVA----------DNVFAVPSRLN 328
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMI 363
++ GN A LE+ + + +R Q K + L L P ++ + R +G++
Sbjct: 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 422
AF + + + +++ P G +TV PP ++ EI +A+
Sbjct: 389 CAFS--LPTTAD----RDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVR 442
Query: 423 QTFNEV 428
V
Sbjct: 443 SALPVV 448
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419 | Back alignment and structure |
|---|
Score = 254 bits (652), Expect = 5e-81
Identities = 98/428 (22%), Positives = 187/428 (43%), Gaps = 49/428 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSN 73
LVI + W + DV G +YLD S VN G S+ + K Q+ KL H ++
Sbjct: 26 LVIDHGEGVWIY---DVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82
Query: 74 LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
+ P ++L++KL + + F+ + G A+E ++K+ + +K I
Sbjct: 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAF 135
Query: 133 QNSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPD----SRNINKGNSANEIARCA 187
+HG T G++++T + + I + + P+ +IN + +E+
Sbjct: 136 LGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRV 195
Query: 188 IFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244
I +E + N ++A I EP +Q GG ++ + ++++ Y I L+ DE+
Sbjct: 196 IEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF-- 302
+G GRTGK FA E+ PD + L+K + GG +P+ + + F
Sbjct: 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL-----------DFKP 303
Query: 303 -LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKG 361
+HS+++ GN LAC ++I ++L +++ K + L L R G
Sbjct: 304 GMHSNTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGLADD-----VRGIG 356
Query: 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSA 420
+ W + + + + + K LLL P G + + ++PP ++++ E +
Sbjct: 357 LAWGLE--YNEKK----VRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDI 410
Query: 421 IFQTFNEV 428
+ + V
Sbjct: 411 LKKVIKVV 418
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 6e-80
Identities = 106/407 (26%), Positives = 187/407 (45%), Gaps = 49/407 (12%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P ++L+E L
Sbjct: 34 IYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQMELAELL 91
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
S T G F+ + G A E A+K++ Y K K + + NS+HG TLG+L
Sbjct: 92 SKNT--FGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILSAHNSFHGRTLGSLTA 148
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T +++ + L+ G ++E L +K + A+
Sbjct: 149 TGQPKYQKPFEPLV---------------PG-----FEYFEFNNVEDLRRKMSEDVCAVF 188
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + PD
Sbjct: 189 LEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDV 247
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLE 323
L +KG+ GG +P+ V+ ++ N+ H ++ GNPLAC A + ++
Sbjct: 248 LTTAKGLGGG-VPIGAVIVNER----------ANVLEPGDHGTTFGGNPLACRAGVTVIK 296
Query: 324 IFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 382
K+ L+ + + + K L + + + + R G++ E +++
Sbjct: 297 ELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVS------NRE 350
Query: 383 FFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+N+LL+ P G NT+ +PP + EI + + +
Sbjct: 351 VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 3e-79
Identities = 111/403 (27%), Positives = 190/403 (47%), Gaps = 41/403 (10%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
L D K+YLD S V G++++ N +K Q++KL H SNL ++ + ++ L
Sbjct: 30 LFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAAAKNL 87
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ + L F+ + G ++E A+K + Y +NKG + +FI ++S+HG TLGAL++
Sbjct: 88 AKAS--ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSL 144
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T + +++ + L++ + D+ + K + K AII
Sbjct: 145 TANEKYQKPFKPLIS--------------------GVKFAKYNDISSVEKLVNEKTCAII 184
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+E VQ GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I PD
Sbjct: 185 LES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDI 243
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ +K + G L + + K+ ++ + H +Y GNPL C A EIF
Sbjct: 244 MTSAKALGCG-LSVGAFVINQKVASNSLEAGD-----HGSTYGGNPLVCAGVNAVFEIFK 297
Query: 327 KDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 385
++ IL+ +++ + ++L LI + G + + K
Sbjct: 298 EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVK------VAKVIQ 351
Query: 386 AALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+N LLL G N + +PP IL K I M+ + +
Sbjct: 352 KCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 7e-78
Identities = 104/416 (25%), Positives = 182/416 (43%), Gaps = 47/416 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+VI + W D G RY+D +S++ GH + I AL +Q N++ S
Sbjct: 20 IVISKAEGVWVE---DPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRA 74
Query: 75 THKPV-IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFIC 131
H EK++ LT + GA AVE A+K + + Y+ + N+ + I
Sbjct: 75 FHSDQLGPWYEKVAKLTNK--EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIV 132
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191
++++HG T+GA+++++ + +K + + P I G DL
Sbjct: 133 CEDNFHGRTMGAVSMSSNEEYKRGFGPM--------LPGIIVIPYG------------DL 172
Query: 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
E L AA I+EP +Q G+ + + +LK E+C N+ +ADEI G GRT
Sbjct: 173 EALKAAITPNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 311
GK FAC+ + PD L K + GG P+S I + H ++ GN
Sbjct: 232 GKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGN 285
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 371
PLAC ++A LE+ ++ + +R S + + I +P I R KG+ + +
Sbjct: 286 PLACAVSIAALEVLEEEKLTER-SLQLGEKLVGQLKEIDNPMITEVRGKGLFIG--IELN 342
Query: 372 DPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+P ++ + LL + N + + PP ++++ +++ I +
Sbjct: 343 EP------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 1e-77
Identities = 99/413 (23%), Positives = 167/413 (40%), Gaps = 45/413 (10%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV- 79
K + + DV+ KRY D +S++ GH + I A+ NQ L S
Sbjct: 55 KGVFVY---DVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPL 109
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYH 137
L++L Y + GA A E A K+ + Y + N K + +N++
Sbjct: 110 GICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFS 167
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G TLG ++ + + + P + DLE L ++
Sbjct: 168 GRTLGCISASTTKKCTSNFGPF--------APQFSKVPYD------------DLEALEEE 207
Query: 198 NHNK-IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+ + A I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK
Sbjct: 208 LKDPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 266
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316
H + PD + L K ++GG+ P+S V+ D I I H +Y GNPLA
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAAS 320
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQ 375
+ L + + + + + + L + + + R KG++ A + E
Sbjct: 321 ICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF---KNEL 377
Query: 376 IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ + +N L+ R + T+ L PP + K ++ T I +T
Sbjct: 378 VN--VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395 | Back alignment and structure |
|---|
Score = 242 bits (621), Expect = 1e-76
Identities = 97/396 (24%), Positives = 169/396 (42%), Gaps = 46/396 (11%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D G Y+D + + V GH N + +A+K Q L + + L
Sbjct: 39 VWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQTLPTPMRGEFYRTL 96
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+++ +L F + G A E ALK + + +KKF+ + G T+G+L+V
Sbjct: 97 TAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSLSV 150
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T ++E + L+ I D+E L + + AA+I
Sbjct: 151 TWEPKYREPFLPLV--------EPVEFIPYN------------DVEALKRAVDEETAAVI 190
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I PD
Sbjct: 191 LEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDI 249
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
L L+K + GG +PL + + +++ S+ H ++ GNPLA A +A +
Sbjct: 250 LTLAKALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNPLAMAAGVAAIRYLE 302
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ + +R ++ + L ++ PKI R G++ ++ + I
Sbjct: 303 RTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIAR-------L 354
Query: 387 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421
++ +L G + +PP ++ K +++ + A+
Sbjct: 355 EKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439 | Back alignment and structure |
|---|
Score = 241 bits (616), Expect = 2e-75
Identities = 103/412 (25%), Positives = 185/412 (44%), Gaps = 44/412 (10%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPV 79
K + W DV G++Y D +SS+ GH + I ALK+Q++KL S + +
Sbjct: 66 KGIYLW---DVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVL 120
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYH 137
+ E ++ L Y + G A E A K++ + Y + K K + ++
Sbjct: 121 GEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 178
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G TL A++ + + + + P I DL L +
Sbjct: 179 GRTLSAISSSTDPTSYDGFGPF--------MPGFDIIPYN------------DLPALERA 218
Query: 198 -NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+AA ++EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A
Sbjct: 219 LQDPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316
++ + PD + L K ++GG P+S V+ D I +I H +Y GNPL C
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCR 331
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI 376
A+A LE+ ++N+ + + + I + + + R KG++ A ++I++ +
Sbjct: 332 VAIAALEVLEEENLAEN-ADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETKDW 388
Query: 377 ETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ + K + N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 389 D--AWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-73
Identities = 111/400 (27%), Positives = 188/400 (47%), Gaps = 48/400 (12%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
L D GK YLD +S VN GH+ + +ALK Q+ KL HV SNL + +L+ KL
Sbjct: 22 LYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAHKL 79
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L+
Sbjct: 80 VKHF-WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSLSA 137
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T F + + L+ + + D++ + K + A II
Sbjct: 138 TGQPKFHKGFEPLVP--------------------GFSYAKLNDIDSVYKLLDEETAGII 177
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IE +Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + PD
Sbjct: 178 IEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ L+KG+ GG +P+ ++ +++ S + H ++ GNPLAC A ++
Sbjct: 237 IALAKGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDEV- 288
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ +L + + + L L + + +G++ ++ E K + +
Sbjct: 289 -EKLLPHVREVGNYFKEKLKELGK--GKV--KGRGLMLGLELERE--------CKDYVLK 335
Query: 387 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425
AL+ LL+ + +PP I+ K I S + +
Sbjct: 336 ALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-69
Identities = 88/443 (19%), Positives = 158/443 (35%), Gaps = 59/443 (13%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP-- 78
+ ++ L+DV G R LD S G+S+ + K ++ N + L P
Sbjct: 53 RGNY---LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPE 109
Query: 79 --VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN----------- 125
V KL E L S+ + + G+ + E A K F ++ +K
Sbjct: 110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETC 169
Query: 126 ---------KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR---N 173
+ ++HG T+G LA T+ ++ +I + I P +
Sbjct: 170 MINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD-WPIAPFPRLKYPLE 228
Query: 174 INKGNSANEIARC--AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231
+ E ARC + DL + +K +A II+EP +Q GG + + +R+I
Sbjct: 229 EFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDI 287
Query: 232 CNNYNIHLIADEIAVGCGRTGKFFACEHA--EIWPDFLCLSKGITGGYLPLS-LVMTTDK 288
+ + DE+ G G TGKF+A EH + D + SK + G +
Sbjct: 288 SRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEEFRPNA 346
Query: 289 IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
Y +++ G+P + I ++++L + K + L L
Sbjct: 347 PYR------------IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394
Query: 349 I-THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMP 405
+P+ I R +G +FD D K A ++L G ++ P
Sbjct: 395 QARYPQFISRVRGRGTFCSFD--TPDES----IRNKLISIARNKGVMLGGCGDKSIRFRP 448
Query: 406 PYILNKNEIQHMTSAIFQTFNEV 428
+ + + +
Sbjct: 449 TLVFRDHHAHLFLNIFSDILADF 471
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 46/235 (19%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250
LLK++ + AAI++EP + AGG + + +L L+R + LI DE V R
Sbjct: 223 TADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDE--VMTSR 279
Query: 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI----YNSIYYKNNIN 300
A E I D L K I GG + +M ++ +
Sbjct: 280 LSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLM--ERFDPARDGAFA------ 330
Query: 301 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIINF 357
H+ +++ N L A A L +S + L + P
Sbjct: 331 ---HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFT- 386
Query: 358 RQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+ I + + FF L+ G +YL P
Sbjct: 387 GLGSLGTIHFSRAPIRSAGDVRAADQQLK-ELFFFHMLRK-------G--IYLAP 431
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
DV G Y++ + + LFGHS+ I A++ L
Sbjct: 94 FQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV 131
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 7e-17
Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 61/246 (24%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+ + + + IAA I EP G+ +L+ E+ Y I DE V
Sbjct: 191 MREVFANHGSDIAAFIAEP---VGSHFGVTPVSDSFLREGAELARQYGALFILDE--VIS 245
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL------VMT------TDKIYNSIYY 295
G R G ++ PD CL+K GG LP + VM K+
Sbjct: 246 GFRVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVL----- 299
Query: 296 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HP 352
H +++GNP+ AA+A ++ +D++ +I+ + +A+ L
Sbjct: 300 --------HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 353 KIINFRQKGMIWAF--------DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGN 399
+ + D + ++ +A + G
Sbjct: 352 WLAY-GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI-AAMRMALILE-------G- 401
Query: 400 TVYLMP 405
V +
Sbjct: 402 -VDIGG 406
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
L I + K DV G YLD + GH + +N A+ L+
Sbjct: 41 LFISDAQGVHKT---DVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH 88
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 9e-17
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 53/238 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
L+ L K +++AAI++EP G G++ +L+ V E+ + +I DE V
Sbjct: 192 LKEALDKWGHEVAAILVEP---IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE--VIT 246
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 297
R A + + PD L K I GG LP+ V Y
Sbjct: 247 AFRFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAY------- 298
Query: 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 354
+ + +GNP + + +A LE+ ++ + +++ + + K +
Sbjct: 299 ------QAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352
Query: 355 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+N R KG + + IED + E F KFF L+ G V L P
Sbjct: 353 LN-RLKGALTVYFTTNTIEDYDAAQDTDGEMF-GKFFKLMLQE-------G--VNLAP 399
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 54/239 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+ ++ ++A II+EP AG I +L +R +C+ + LI DE V
Sbjct: 190 VRQAFEQYPQEVACIIVEP---VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE--VMT 244
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R A ++ + PD CL K I GG +P+ VM + + +Y
Sbjct: 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVM--NALAPTGPVY----- 296
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNP+A A A L ++ + + +++ + L P ++N
Sbjct: 297 ----QAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVN 352
Query: 357 FRQKGMIWAFDVIIEDPEQIETFS----------KKFFVAALKNELLLRPIGNTVYLMP 405
GM F + + + + K+FF L+ G VYL P
Sbjct: 353 -HVGGMFGLF---FTNADTVTCYQDVMNCDVERFKRFFHLMLEE-------G--VYLAP 398
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 2e-16
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
++ L +N +IA +I+EP G G I+ D+ +L+ +REI ++ L+ DE V
Sbjct: 189 VKALFAENPGEIAGVILEP---IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE--VIT 243
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R E + PD L K I GG LP+ +M + +Y
Sbjct: 244 GFRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIM--QLVAPAGPMY----- 295
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ H
Sbjct: 296 ----QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGG 351
Query: 357 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+ GM F + + + E ++ F +F L+ G +YL P
Sbjct: 352 -QVSGMFGFFFTEGPVHNYEDAKKSDLQKF-SRFHRGMLEQ-------G--IYLAP 396
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 6e-16
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 53/238 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
LE + + ++IA +I+EP G+I +L ++ + LI DE V
Sbjct: 193 LERVFAEYGDRIAGVIVEP---VIANAGVIPPRREFLAALQRLSRESGALLILDE--VVT 247
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 297
G R G A + I D + L K I GG P+ SL+ K++
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVF------- 299
Query: 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 354
++ +++ +P+ A LATL+ ++ + + K + +A + ++ P
Sbjct: 300 ------NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353
Query: 355 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
IN R + M+ F + + Q + + K L+ G V++ P
Sbjct: 354 IN-RVESMMQLFIGVEEVSNAAQARKADKKFY-VKLHEEMLRR-------G--VFIAP 400
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 1e-14
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 50/236 (21%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
++ ++ + IA +I+EP AG G++ +L+ +RE+ LI DE V
Sbjct: 190 VKYAFEQFGDDIACVIVEP---VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE--VMT 244
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R + + PD CL K I GG LP+ + +M ++ IY
Sbjct: 245 GFRVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIM--RQVAPSGPIY----- 296
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNPLA A TL + + + L P IN
Sbjct: 297 ----QAGTLSGNPLAMAAGYETLVQL-TPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351
Query: 357 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
R MI F D + + + ++ F ++ ++ G V+L P
Sbjct: 352 -RAGSMIGIFFTDEPVINYDAAKSSNLQFF-AAYYREMVEQ-------G--VFLPP 396
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
L +LK+ +IAAII EP G G+++ +LK + E Y + LIADE V
Sbjct: 189 LREVLKRRGEEIAAIIFEP---VVGNAGVLVPTEDFLKALHE-AKAYGVLLIADE--VMT 242
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R A E + PD + L K + GG LP +M +K+ +Y
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIM--EKVAPLGPVY----- 294
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDMKKITKALTSLIT---HPKII 355
+ + SGNPLA A LATLE+ ++ + ++ L ++ P +
Sbjct: 295 ----QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350
Query: 356 NFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
N R MI F + + + E F K+FF L G +Y P
Sbjct: 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELF-KRFFHGLLDR-------G--IYWPP 396
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-08
Identities = 47/280 (16%), Positives = 80/280 (28%), Gaps = 46/280 (16%)
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS--- 135
L +K L Y + G A + + Y + K + + N
Sbjct: 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPV--LLKYKQKEGKAKNPVFISNFHFD 133
Query: 136 ---YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
H E G A+ + ++ + KG+ I L+
Sbjct: 134 TTAAHVELNGCKAINIVTE-------------KAFDSETYDDWKGDFD-------IKKLK 173
Query: 193 ILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG---- 247
+ ++ + I AI+ AGG LK V EI + I ++ D
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQP-VSMSNLKEVYEIAKQHGIFVVMDSARFCENAY 232
Query: 248 --CGRTGKFFACEHAEIWPDFLCLSKGIT-----GGYLPL-SLVMTTDKIYNSIYYKNNI 299
R K+ E+ D + +T L + LV D +
Sbjct: 233 FIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRC 292
Query: 300 NIFLHSHSYSGNPLACCAALA--TLEIFNKDNILQRISQD 337
+Y G AA+ E ++ + RI Q
Sbjct: 293 VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQV 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 60/395 (15%), Positives = 109/395 (27%), Gaps = 135/395 (34%)
Query: 76 HKPVIKLSEKLSSLTQYKLGHCFYGSDGAS----AVEVAL------KMSFH-YWYNKGFL 124
+P +KL + L L K G G+ A++V L KM F +W N
Sbjct: 134 LQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 125 NKKKFIC--LQNSYH-----GETLGALAVTNIQSFKEIYTSL----LNKTY--------- 164
N + + LQ + + + I L +K Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 165 ----------------IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208
++TT + + ++A L + ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 209 PLVQCAGGMIMYDSIYLKLVREIC--NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
Q L RE+ N + +IA+ I + W D
Sbjct: 313 CRPQ-------------DLPREVLTTNPRRLSIIAESIR------------DGLATW-DN 346
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ ++ T I +S+ N + + + L +F
Sbjct: 347 ----------WKHVNCDKLTTIIESSL---NVLEPAEYRKMFD-----------RLSVFP 382
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
I L S +IW FDVI D + V
Sbjct: 383 PS----------AHIPTILLS--------------LIW-FDVIKSDVMVV--------VN 409
Query: 387 ALKNELLL--RPIGNTVYLMPPYILNKNEIQHMTS 419
L L+ +P +T+ + Y+ K ++++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMI-----W-AFDVIIEDPEQI 376
++F K N+ R+ Q K+ +AL L ++ G++ W A DV +
Sbjct: 124 QVFAKYNV-SRL-QPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALDV-CLSYKVQ 177
Query: 377 ETFSKKFFVAALKN----ELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
K F LKN E +L + +Y + P N +S I + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSNIKLRIHSI 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 8e-04
Identities = 62/421 (14%), Positives = 128/421 (30%), Gaps = 118/421 (28%)
Query: 6 YFKKKSSNN--LVIRSLKNSWKWSLIDVSGK-----RYLDAISSWWVNLFGHSNSYINKA 58
K K N LV+ +++N+ W+ ++S K R+ V F + + + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATTTHIS 290
Query: 59 LKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114
L + L +L L ++ + +L S ++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AES-----IRDG 340
Query: 115 FHYW--YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172
W + +K I +++S L +++++ L + P S
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSL--NVL------EPAEYRKMFDRL----SVF--PPSA 385
Query: 173 NINKGNSANEIARCAIF-------DLEILLKKNHNKIAAIIIEPLVQC--AGGMIMYDSI 223
+I ++ D+ +++ K H LV+ I SI
Sbjct: 386 HI-------PTILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSI 431
Query: 224 YLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLV 283
YL+L ++ N Y +H V K F + L Y
Sbjct: 432 YLELKVKLENEYALH----RSIVDHYNIPKTFDSDD---------LIPPYLDQY------ 472
Query: 284 MTTDKIYNSI-YYKNNIN----------IFL----------HSHSYSGNPLACCAALATL 322
Y+ I ++ NI +FL H + + L L
Sbjct: 473 -----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 323 E-----IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE-QI 376
+ I + D +R+ + + + K + + ++ + I E+ Q+
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 377 E 377
+
Sbjct: 588 Q 588
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 9e-06
Identities = 48/303 (15%), Positives = 85/303 (28%), Gaps = 61/303 (20%)
Query: 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS- 135
+ L + L +K H G A + ++ K N
Sbjct: 75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQL----------AIKPGQYVAGNMY 122
Query: 136 -----YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190
YH E GA+ V ++ KG+ +
Sbjct: 123 FTTTRYHQEKNGAVFVDIVR-------------DEAHDAGLNIAFKGDID-------LKK 162
Query: 191 LEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD--EIAVG 247
L+ L+ + IA I + V AGG ++ VRE+ + I + D
Sbjct: 163 LQKLIDEKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVEN 221
Query: 248 C----GRTGKFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDK-IYNSIY 294
+ F AEI + + K + D +++S
Sbjct: 222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFSSA- 278
Query: 295 YKNNINIFLHSHSYSGNPLACCAALAT--LEIFNKDNILQRISQDMKKITKALTSLITHP 352
K + ++ SY G A+A E + I R+ Q K + +
Sbjct: 279 -KELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIV 337
Query: 353 KII 355
+ +
Sbjct: 338 EPV 340
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 1e-04
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 28/55 (50%)
Query: 60 KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114
K L KL+ +SL KL Y D A A +A+K +
Sbjct: 19 KQALKKLQ-------------------ASL---KL----YADDSAPA--LAIKAT 45
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 100.0 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 100.0 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 100.0 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 100.0 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 100.0 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 100.0 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 100.0 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 100.0 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 100.0 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 100.0 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 100.0 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 100.0 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 100.0 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 100.0 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 100.0 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 100.0 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 100.0 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 100.0 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 100.0 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 100.0 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 100.0 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 100.0 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 100.0 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 100.0 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 100.0 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 100.0 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 100.0 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 100.0 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 100.0 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 100.0 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 100.0 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 100.0 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 100.0 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.98 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.98 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.98 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.98 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.98 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.98 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.98 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.97 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.97 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.97 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.97 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.97 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.97 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.97 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.97 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.97 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.97 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.97 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.95 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.97 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.97 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.96 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.96 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.96 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.96 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.96 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.96 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.96 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.96 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.96 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.96 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.96 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.96 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.96 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.95 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.95 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.95 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.95 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.95 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.95 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.95 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.95 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.95 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.95 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.95 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.95 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.95 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.95 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.95 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.94 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.94 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.94 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.94 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.94 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.94 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.94 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.94 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.94 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.94 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.94 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.93 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.93 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.93 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.93 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.93 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.93 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.93 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.93 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.92 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.92 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.92 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.92 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.92 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.92 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.92 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.91 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.91 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.91 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.91 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.91 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.91 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.91 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.91 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.91 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.9 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.9 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.9 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.9 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.9 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.9 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.9 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.9 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.89 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.89 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.89 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.89 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.89 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.88 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.88 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.88 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.88 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.88 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.87 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.87 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.87 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.87 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.87 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.87 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.87 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.87 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.87 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.86 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.86 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.86 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.86 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.86 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.85 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.85 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.84 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.83 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.83 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.82 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.82 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.82 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.81 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.81 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.81 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.8 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.8 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.8 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.79 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.78 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.78 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.78 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.76 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.76 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.75 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.72 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.71 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.7 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.69 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.69 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.68 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.67 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.55 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.54 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.44 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 98.85 |
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-73 Score=553.94 Aligned_cols=412 Identities=25% Similarity=0.466 Sum_probs=366.6
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhc
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~ 90 (430)
..|+++.+++|. |+||.|||+||||.+++|++++||+||+|.+|+++|++++.+. ..+...++...+|+++|.+..
T Consensus 48 ~~P~vi~rg~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~ 124 (473)
T 4e3q_A 48 RGTVVVTHGEGP---YIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVS 124 (473)
T ss_dssp HCCEEEEEEETT---EEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHS
T ss_pred CCCEEEEeeecC---EEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhC
Confidence 358999999998 7999999999999999999999999999999999999997654 333556788899999999999
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
|.+.++|+|++||+|||+.|+|+++.++..+|.+++.+||.+.++|||.+.+++++++.+ ++..+.+.......++.|+
T Consensus 125 p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~-~~~~~~~~~~~~~~~~~p~ 203 (473)
T 4e3q_A 125 PFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKP-YNSVFGLPLPGFVHLTCPH 203 (473)
T ss_dssp SCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCG-GGGGGTCSCTTEEEECCCC
T ss_pred CCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccc-cccccCCCCCcccccCCCc
Confidence 888899999999999999999999999999999999999999999999999999998864 6667777778888888887
Q ss_pred CCCCCC-CCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINK-GNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++... +...+.+.....+++++.+.+. ++++++||+|| +++++|+++|+++|+++|+++|++||++||+|||++||
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EP-iqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGf 282 (473)
T 4e3q_A 204 YWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGF 282 (473)
T ss_dssp HHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSS
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCC-ccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccC
Confidence 665533 4455566666778888877765 56899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
||+|.+|+++++++.||++|++|+++||++|+|++++++++++.+... .....+.|++||++||++|++++++|+++++
T Consensus 283 GRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~ 362 (473)
T 4e3q_A 283 GRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMN 362 (473)
T ss_dssp STTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhcc
Confidence 999999999999999999999999999989999999999999877541 1123567999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecCCEE
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIGNTV 401 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~~~l 401 (430)
+++.+++++++++|+++|+++...+.+..+++.|+|+++++. .+.... ...+.++.+.++++|+++.+.++.+
T Consensus 363 ~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv-~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~i 441 (473)
T 4e3q_A 363 EGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAV-KDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSV 441 (473)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEETTEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEe-cCccccccccccHHHHHHHHHHHHHCCcEEEecCCEE
Confidence 999999999999999999999767888899999999999987 543221 2245789999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
||+|++++|++|+|+++++|++++++++
T Consensus 442 ~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 442 VLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-69 Score=524.05 Aligned_cols=398 Identities=24% Similarity=0.374 Sum_probs=343.6
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
++.|+++.+++|+ |+||.|||+||||.+++|+.++||+||+|++|+++++.++.+......+++...+++++|.++.
T Consensus 44 ~~~P~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~ 120 (456)
T 4atq_A 44 SGVPVYVEDADGG---IIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLT 120 (456)
T ss_dssp CSCSSCEEEEETT---EEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCCeEEeeecC---EEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhC
Confidence 4579999999988 7999999999999999999999999999999999999998766555677888899999999999
Q ss_pred CC-CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc-chhhhhccCCCeeEeCC
Q psy14484 91 QY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~-~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 168 (430)
|. ..++++|++||+|||+.|+|+++.++ +|.+|+.++++|||++.+++++++... ++..+.++..++.++|+
T Consensus 121 p~~~~~~v~f~~sGsEA~e~AlklAr~~t------~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~ 194 (456)
T 4atq_A 121 PGDHAKRTVLFNSGAEAVENAVKVARLAT------GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPM 194 (456)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECC
T ss_pred CCCCCcEEEEeCChHHHHHHHHHHHhhhh------cCCeEEEEecccCCccccccccccCccccccCCCCccccceeccc
Confidence 74 36789999999999999999999987 899999999999999999988877653 56677777788888887
Q ss_pred CCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 169 PDSRNINKGNS-ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 169 ~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
+..++...... ..+.....++.+++.+. ++++++||+|| +++++|.++|+++|+++|+++|++||++||+||||+|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~iAAvivEP-iqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG 271 (456)
T 4atq_A 195 SYPFREENPEITGAEAAKRAITMIEKQIG--GDQVAAIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSG 271 (456)
T ss_dssp CCGGGCSSTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHhhc--CCceEEEEecc-ccCCCCccccchhhhHHHHHHHhhcCCceEecccccc
Confidence 76554432111 12222233444444332 46899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.+|+++++++.||++|++|+++|| +|+|++++++++++.+.. ..|++||++||++|+++.++|+.+++
T Consensus 272 ~GRtG~~~a~e~~gv~PDivt~gK~lggg-~P~~av~~~~~i~~~~~~------~~~~~Tf~gnpla~aaala~L~~i~~ 344 (456)
T 4atq_A 272 FCRTGEWFAVDHEGVVPDIITMAKGIAGG-LPLSAITGRADLLDAVHP------GGLGGTYGGNPVACAAALAAIDTMEQ 344 (456)
T ss_dssp TTTTSSSSGGGGTTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHH
T ss_pred cCCccccccccccCCCCchhhhhhcccCc-CCceeeEecHHHHhcccc------cCCCCCCCCChHHHHhhHHHHHHHhh
Confidence 99999999999999999999999999988 699999999999988765 45899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcC-----CCeeeEeecceEEEEEEeecCCc--cchhHHHHHHHHHHHCCcEEeec--
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITH-----PKIINFRQKGMIWAFDVIIEDPE--QIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~-----~~~~~~~~~g~~~~~~~~~~~~~--~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
+++.+++++.+++++++|+++ .++ +.+.++++.|+|+++++. .+.. ...+.+.++.+.|+++|+++.++
T Consensus 345 ~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~-~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~ 423 (456)
T 4atq_A 345 HDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELV-QPGSKEPNAELTKAVAAACLKEGVIILTCGT 423 (456)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEB-CTTSCCBCHHHHHHHHHHHHHTTEECEEECT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEe-cCCCCCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 999999999999999999988 443 567899999999999997 5422 23345678999999999998875
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.|||+|++++|+++|++++++|+++++..
T Consensus 424 ~~~~irl~PpL~it~~~id~~l~~l~~al~a~ 455 (456)
T 4atq_A 424 YGNVIRLLPPLVISDELLIDGLEVLAAAIKAH 455 (456)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999999999999999753
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-64 Score=497.79 Aligned_cols=412 Identities=26% Similarity=0.439 Sum_probs=363.3
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|+ |+||.||++||||++|+|+++|||+||+|++|++++++++.+.....+.++...+++++|++.++
T Consensus 35 ~~p~~~~~~~G~---~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~ 111 (476)
T 3i5t_A 35 SAQPVLTHAEGI---YVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTP 111 (476)
T ss_dssp CCCCBEEEEEBT---EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSS
T ss_pred CCCeeEEEeecC---EEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCC
Confidence 368999999888 79999999999999999999999999999999999998876544446788999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++|+|++||+||++.|+++++.++..+|.+++++||+++++|||++..++++++.+.++..+.++..+..+++.|..
T Consensus 112 ~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 191 (476)
T 3i5t_A 112 GDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNP 191 (476)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCG
T ss_pred CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcc
Confidence 78899999999999999999999998888888889999999999999999999999988888888888888888888876
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++. .+.+.+++....+++|++++++. ++++++|++|| +++++|.++|+++||++|+++|++||++||+||||+||||
T Consensus 192 ~~~-~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr 269 (476)
T 3i5t_A 192 RHA-GNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEP-ILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGR 269 (476)
T ss_dssp GGC-TTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred ccc-CCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 655 44455566666689999999764 36799999999 9999999999999999999999999999999999999999
Q ss_pred cccccccc-cCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 251 TGKFFACE-HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 251 ~g~~~~~~-~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+|.+++++ .+++.||++||||++++|++|+|++++++++++.+... ...+.+.+++||++++++++++.++|+.++++
T Consensus 270 ~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~ 349 (476)
T 3i5t_A 270 CGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMERE 349 (476)
T ss_dssp TSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred ccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhH
Confidence 99888888 89999999999999999878999999999999888651 11244678899999999999999999988888
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccch------hHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE------TFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
++.++++++.+++++.|+++..++.+..+++.|+|+++++. .+..+.. ..+..+++.|+++||++.+.++.+|
T Consensus 350 ~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iR 428 (476)
T 3i5t_A 350 GIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCL-LDPTRADGTAEDKAFTLKIDERCFELGLIVRPLGDLCV 428 (476)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CC-----CCHHHHHHHHHHHHHHHHTTEECEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeEEEEe-cCccccccccchhHHHHHHHHHHHHCCCEEEecCCEEE
Confidence 99999999999999999988777888889999999999987 5422111 1356789999999999999889999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.+|+++|++++++|++++.++.
T Consensus 429 i~p~l~~t~e~i~~~l~~l~~~l~~~~ 455 (476)
T 3i5t_A 429 ISPPLIISRAQIDEMVAIMRQAITEVS 455 (476)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998653
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-64 Score=499.98 Aligned_cols=407 Identities=28% Similarity=0.474 Sum_probs=357.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++.+++|. |+||.||++||||++|+|+++|||+||+|++|+.++++++.+ .....++++...+++++|++.+|
T Consensus 37 ~p~~~~~~~G~---~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~ 113 (472)
T 3hmu_A 37 GTRVITRARGV---WLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP 113 (472)
T ss_dssp CCEEEEEEEBT---EEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSC
T ss_pred CCeeEEEeecC---EEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC
Confidence 68999999888 799999999999999999999999999999999999988653 33346778999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.++|+|++||+||++.|+++++.++..+|.+++++||+++++|||++.++.++++.+.++..+. +..++..++.|..
T Consensus 114 ~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~ 192 (472)
T 3hmu_A 114 GDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNW 192 (472)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCcc
Confidence 778899999999999999999999998888888899999999999999999999999888888777 6677778887754
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++.....+.+++...++++|++++++. ++++++|++|| +++++|.++|+++|+++|+++|++||++||+||+|+||||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep-v~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr 271 (472)
T 3hmu_A 193 WAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGR 271 (472)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcc
Confidence 331111344555556689999999754 35799999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|.+++++.+++.||++||||+|+||++|+|++++++++++.+.. +.+.+++||++|+++++++.++|+.++++++
T Consensus 272 ~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~~----~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~ 347 (472)
T 3hmu_A 272 TGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGK----DEFNHGYTYSGHPVAAAVALENLRILEEENI 347 (472)
T ss_dssp TSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHTT----SCBCCCCTTTTCHHHHHHHHHHHHHHHHTTH
T ss_pred cCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhccc----CCccccCCCCCCHHHHHHHHHHHHHHHHhHH
Confidence 998888888999999999999999987899999999999988832 3467889999999999999999998888899
Q ss_pred HHHHH-HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc-------hhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 331 LQRIS-QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI-------ETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 331 ~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
.++++ ++.+++++.|+++..++.+..+++.|+|+++++. .+.... ...+..+++.|+++||++.++++++|
T Consensus 348 ~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iR 426 (472)
T 3hmu_A 348 LDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALT-PNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMI 426 (472)
T ss_dssp HHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEEC-SCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEe-cCccccccccchhHHHHHHHHHHHHHCCcEEEecCCEEE
Confidence 99999 9999999999988667888899999999999987 542211 22356889999999999999889999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.+|+++|++++++|++++.++.
T Consensus 427 i~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 427 ISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988653
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=491.53 Aligned_cols=372 Identities=18% Similarity=0.254 Sum_probs=322.3
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|+++.+++|+ |+||.|||+||||.++||+.+|||+||+|++|++++++++.+. ...++...++++.|++.
T Consensus 66 ~~~~P~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~---~~~~~~~~~lae~l~~~ 139 (454)
T 4ao9_A 66 YAPFPLTIARGEGA---ALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINL---TGHNLLEGRLARLICER 139 (454)
T ss_dssp CSSCCCEEEEEETT---EEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCC---CSEESSHHHHHHHHHHH
T ss_pred cCCCCccEEEeecC---EEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCc---cCCcHHHHHHHHHHHHh
Confidence 34579999999998 7999999999999999999999999999999999999875432 34456677899999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
+| +.++++|++||+|||+.|+|+++.++ +|++||.++++|||++....+.+....+ ..+....|+
T Consensus 140 ~p-~~~~v~f~~SGsEA~e~AiklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~-------~~~~~~~p~- 204 (454)
T 4ao9_A 140 FP-QIEQLRFTNSGTEANLMALTAALHFT------GRRKIVVFSGGYHGGVLGFGARPSPTTV-------PFDFLVLPY- 204 (454)
T ss_dssp ST-TCSEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCBCSTTCBBSSSBCTTSC-------CSEEEEECT-
T ss_pred CC-CCCEEEEeCchHHHHHHHHHHHHhcc------cCCeEEEEeCCcCCccccccccccCccC-------CCCcccCCC-
Confidence 98 78999999999999999999999987 8999999999999998776655443221 112223333
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
+|++++++.++++++++++||+|| +++++|.++|+++||++|+++|++||++||+|||++|
T Consensus 205 ----------------nd~~~l~~~l~~~~~~iAavIvEP-v~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-- 265 (454)
T 4ao9_A 205 ----------------NDAQTARAQIERHGPEIAVVLVEP-MQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-- 265 (454)
T ss_dssp ----------------TCHHHHHHHHHHTGGGEEEEEECS-EESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--
T ss_pred ----------------chHHHHHHHHhhcCCceEEEEecc-ccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--
Confidence 389999999998878899999999 9999999999999999999999999999999999994
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
|+|.+++.+++++.||++|++|+++|| +|+|++++++++++.+.+ ..+.+.|++||++||++|++++++|+.+++++
T Consensus 266 R~G~~~a~e~~gv~PDi~t~gK~lggG-~Piga~~~~~ei~~~~~~--~~~~~~h~~T~~gnPla~AAala~L~~l~~~~ 342 (454)
T 4ao9_A 266 RLAPHGLANKLGIRSDLTTLGKYIGGG-MSFGAFGGRADVMALFDP--RTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPE 342 (454)
T ss_dssp GGSTTCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHGGGCT--TTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHH
T ss_pred CCccccchhccCCCCcEEEeccccCCC-CcceeeeeHHHHHHHHhh--ccCCccccCCCCCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999 699999999999998865 34567899999999999999999999998889
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEEeecCCE
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNT 400 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~~~~~~~ 400 (430)
+.+++++++++|+++|+++ .+++.+..+++.|+|+++++. .+.. ........+++.|+++||++.|.+
T Consensus 343 ~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~-~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~-- 419 (454)
T 4ao9_A 343 AAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFV-QGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG-- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESC-CSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEe-cCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC--
Confidence 9999999999999999998 677878899999999999986 4321 112234678888999999998776
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.++..+|++|||+++++|++++.+.
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~~ 446 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGGH 446 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 345677899999999999999999863
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-62 Score=480.02 Aligned_cols=396 Identities=32% Similarity=0.583 Sum_probs=344.4
Q ss_pred CceeEEeecCCceeEEEEC-CCC--EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 13 NNLVIRSLKNSWKWSLIDV-SGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~-~g~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
.|.++.+++|. |+||. ||+ +||||++++|+++|||+||+|++|+.+++.++.+.....+.++...+++++|++.
T Consensus 54 ~~~~~~~~~G~---~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~ 130 (457)
T 3tfu_A 54 SPVVAVAAHGA---WLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDI 130 (457)
T ss_dssp CCEEEEEEEBT---EEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHH
T ss_pred CCceEEeeecC---EEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHh
Confidence 58999999988 79999 999 9999999999999999999999999999988765544467789999999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCC-CccchhhhhccCCCeeEeCC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN-IQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (430)
++.+.++|+|++||+||++.|+++++.+++.+|.+++++||+++++|||++..+++++. .+.++..+.+...+..+++.
T Consensus 131 ~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (457)
T 3tfu_A 131 TPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQ 210 (457)
T ss_dssp SSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECC
T ss_pred CCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecC
Confidence 98788899999999999999999999988788877889999999999999999988854 55667777777777777777
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
|.... ..+|+++|+++++++++++++|++||++++++|.++|+++++++|+++|++||++||+||+|+||
T Consensus 211 p~~~~----------~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~ 280 (457)
T 3tfu_A 211 VPRDY----------DPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGF 280 (457)
T ss_dssp CCSSC----------CHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CCccc----------CHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCC
Confidence 64221 13589999999987656899999999888999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|..++++.+++.||++||||+|+||++|+|++++++++++.+.. ...+.+.+++||++|+++++++.++|+.++++
T Consensus 281 gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~-~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~ 359 (457)
T 3tfu_A 281 GRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA-GAAGALMHGPTFMANPLACAVSVASVELLLGQ 359 (457)
T ss_dssp TTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHH-SSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTS
T ss_pred ccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhc-cCCCceeEecCCCcCHHHHHHHHHHHHHHhhh
Confidence 99999888889999999999999999997799999999999998863 12345678999999999999999999988888
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 408 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~ 408 (430)
++.++++++.++++++|+++..++.+..+++.|+|+++++. .... +.++++.|+++||++.+.++++||+|++.
T Consensus 360 ~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~-~~~~-----~~~~~~~l~~~Gv~v~~~~~~lRi~p~~~ 433 (457)
T 3tfu_A 360 DWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECD-RPVD-----LAVATPAALDRGVWLRPFRNLVYAMPPYI 433 (457)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEES-SCCC-----HHHHHHHHHHTTEECCCBTTEEEECCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEEC-Cccc-----HHHHHHHHHHCCeEEEecCCEEEEECCCC
Confidence 99999999999999999988667778888999999999887 5321 46799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|++++++++++|++++.++
T Consensus 434 ~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 434 CTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-61 Score=478.47 Aligned_cols=413 Identities=21% Similarity=0.354 Sum_probs=359.8
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhc
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
+.|.++.+++|. |++|.||++||||++|+++++|||+||+|++|+.+++.++.+ .....+.++...+++++|++.+
T Consensus 32 ~~p~~~~~~~G~---~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 108 (460)
T 3gju_A 32 SPTRIMAGGEGV---TVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRA 108 (460)
T ss_dssp SCCCCEEEEEBT---EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHS
T ss_pred CCceEEEEeecc---EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhC
Confidence 455999999888 799999999999999999999999999999999999988653 2334677889999999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+.++++|+|++||+||++.|+++++.++..+|.+++++||+++++|||++..++++++.+.++..+.+...+...++.|.
T Consensus 109 ~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (460)
T 3gju_A 109 PKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPY 188 (460)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCC
T ss_pred CCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCc
Confidence 77888999999999999999999999888888889999999999999999999999998888888888888888888876
Q ss_pred CCCCCC-CCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINK-GNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~-~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
.++... +.+.+++...++++|++++++. ++++++|++|| +++++|.++++++++++|+++|++||++||+||+|+||
T Consensus 189 ~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 267 (460)
T 3gju_A 189 YFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGF 267 (460)
T ss_dssp GGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred cccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 555432 4455666666789999999754 35799999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
+|+|..++++.+++.||+++|||+|++|++|+|++++++++++.+... ...+.+.+++||++++++++++.++|+.+++
T Consensus 268 gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 347 (460)
T 3gju_A 268 GRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDE 347 (460)
T ss_dssp TTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred CcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 999988888889999999999999999877999999999999888530 0113456889999999999999999998888
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc------hhHHHHHHHHHHHCCcEEeecC--
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI------ETFSKKFFVAALKNELLLRPIG-- 398 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~a~~~~~~l~~~Gv~~~~~~-- 398 (430)
+++.++++++.++++++|.+. ..++.+..+++.|+++++++. .+.... ...+..+++.|+++||++.+++
T Consensus 348 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 426 (460)
T 3gju_A 348 MDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFV-ADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQG 426 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEc-cCccccccccchHHHHHHHHHHHHHCCeEEecCCCC
Confidence 889999999999999999655 677888889999999999987 532211 1235689999999999999976
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++||+|++.+|+++|++++++|++++.++.
T Consensus 427 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 427 DILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998764
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-61 Score=479.88 Aligned_cols=409 Identities=25% Similarity=0.433 Sum_probs=353.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++.+++|+ |++|.||++||||++++++++|||+||+|++|+.++++++.. .....++++...+++++|++.++
T Consensus 32 ~p~~~~~~~G~---~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 108 (459)
T 4a6r_A 32 GARVMTRGEGV---YLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTP 108 (459)
T ss_dssp --CCEEEEEBT---EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSC
T ss_pred CCeeEEEeecC---EEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC
Confidence 57899999888 799999999999999999999999999999999999988652 33346788999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.++++|+|++||+||++.|+++++.++..+|.|++++||+++++|||++..+.++++.+.++..+.+...+..+++.|..
T Consensus 109 ~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 188 (459)
T 4a6r_A 109 AGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188 (459)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCcc
Confidence 78899999999999999999999998888888889999999999999999999999988888888888778888887764
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
++.....+.+.+...++++|++++++. ++++++|++|| +++++|.++|+++++++|+++|++||++||+||+|+||++
T Consensus 189 ~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGR 267 (459)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTT
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 331111344555555689999999754 35799999999 9999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCH
Q psy14484 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNI 330 (430)
Q Consensus 251 ~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~ 330 (430)
+|..++++.+++.||++||||+++||++|+|++++++++++.+.. .+.+.+++||++++++++++.++|+.++++++
T Consensus 268 ~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~---~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 344 (459)
T 4a6r_A 268 TGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA---GGDFNHGFTYSGHPVCAAVAHANVAALRDEGI 344 (459)
T ss_dssp TSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHH---HCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCH
T ss_pred ccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhc---CCCcccCCCCCCCHHHHHHHHHHHHHHhcchH
Confidence 998888888899999999999999987899999999999988873 12356788999999999999999998888899
Q ss_pred HHHHH-HHHHHHHHHH-HchhcCCCeeeEeecceEEEEEEeecCCcc------chhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 331 LQRIS-QDMKKITKAL-TSLITHPKIINFRQKGMIWAFDVIIEDPEQ------IETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 331 ~~~~~-~~~~~l~~~l-~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
.++++ ++.+++++.| +.+..++.+..+++.|+|+++++. .+..+ ....+..+++.|+++||++.++++++|
T Consensus 345 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iR 423 (459)
T 4a6r_A 345 VQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLV-KNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIV 423 (459)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEEC-SBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEe-cCccccccccchHHHHHHHHHHHHHCCeEEecCCCEEE
Confidence 99999 9999999999 777777888889999999999987 53221 112356899999999999999889999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.+|++++++++++|++++.++.
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 424 SAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-61 Score=475.52 Aligned_cols=413 Identities=37% Similarity=0.680 Sum_probs=336.8
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
...|.++.+++|+ |+||.||++||||.++++++++||+||+|++|+.++++++.+.....+.++...+++++|++.+
T Consensus 24 ~~~p~~~~~g~G~---~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 100 (448)
T 3dod_A 24 DENPLIIESGTGI---KVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDIS 100 (448)
T ss_dssp HHSCCEEEEEEBT---EEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHS
T ss_pred cCCCceEEEeeeC---EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC
Confidence 3468999999888 7999999999999999999999999999999999999887554445677889999999999999
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
+.+.++|+|++||+||++.|+++++.++..+|.+++++||+++++|||++..+..+++.+.++..+.+...+...++.|+
T Consensus 101 ~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (448)
T 3dod_A 101 PKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPY 180 (448)
T ss_dssp CTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCC
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCc
Confidence 87788999999999999999999998765666666899999999999999999988888878888888777888888888
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc-cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ-CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~-~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
.++.+ +...+.+..+|+++|+++++++++++++|++|| ++ +++|.++++++++++|+++|++||++||+||+|+||+
T Consensus 181 ~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g 258 (448)
T 3dod_A 181 VYRSE-SGDPDECRDQCLRELAQLLEEHHEEIAALSIES-MVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFG 258 (448)
T ss_dssp CTTSS-SCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEES-SEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cccCC-ccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeC-cccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCC
Confidence 87776 666677788899999999985556899999999 98 9999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
++|..++++.+++.||++||||++++|++|+|++++++++++.+... ...+.+.+++|+++++++++++.++|+.++++
T Consensus 259 ~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 338 (448)
T 3dod_A 259 RTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESE 338 (448)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcc
Confidence 99988888889999999999999999856999999999999887530 01334668899999999999999999988878
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccch------hHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE------TFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
++.++++++.+++++.|+++..++.+..+++.|.++++++. .+..... ..+..+++.|+++||++.|.++.+|
T Consensus 339 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~iR 417 (448)
T 3dod_A 339 NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAELV-RSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIA 417 (448)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEEC-SBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEETTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEEc-cCcccccccchhhHHHHHHHHHHHHCCcEEeccCCEEE
Confidence 89999999999999999887667777788999999999987 5322111 0136789999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.+|+++|++++++|++++.+++
T Consensus 418 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 418 FLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998775
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-60 Score=466.43 Aligned_cols=408 Identities=28% Similarity=0.470 Sum_probs=354.3
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|+ |++|.||++||||++++++++|||+||+|++|+.++++++.+ ....+.++...+++++|++.++
T Consensus 30 ~~p~~~~~~~G~---~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~ 105 (452)
T 3n5m_A 30 NSTTVGAKAEGC---WVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-FPMSQSHEPAIKLAEKLNEWLG 105 (452)
T ss_dssp GGCCEEEEEEBT---EEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-CCTTSEEHHHHHHHHHHHHHHT
T ss_pred CCCceEEEeeeC---EEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-cccccCCHHHHHHHHHHHHhCC
Confidence 578999999888 799999999999999999999999999999999999988655 3446778999999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+.+ |+|++||+||++.|+++++.++..+|.+++++||+++++|||++..+.++++.+.++..+.+...+..+++.|+.
T Consensus 106 ~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
T 3n5m_A 106 GEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDC 184 (452)
T ss_dssp SCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCT
T ss_pred CCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCcc
Confidence 6666 999999999999999999987666777788999999999999999999999888888888888788888888877
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHH-hCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLK-KNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~-~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++.+.+.+.+.+...++++|+++++ .+++++++|++|| + +| +|.++|+++++++|+++|++||++||+||+|+||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep-~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g 262 (452)
T 3n5m_A 185 YRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEP-IITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFG 262 (452)
T ss_dssp TTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECS-SBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEcc-ccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCC
Confidence 7766544444444556999999997 3346899999999 8 89 99999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
++|..++++.+++.||++||||++++|++|+|++++++++++.+......+.+.+++|+++++++++++.++|+.+++++
T Consensus 263 ~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 342 (452)
T 3n5m_A 263 RTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENEN 342 (452)
T ss_dssp TTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99988888999999999999999999868999999999999887531123456688999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc----hhHHHHHHHHHHHCCcEEeecC------
Q psy14484 330 ILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI----ETFSKKFFVAALKNELLLRPIG------ 398 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~a~~~~~~l~~~Gv~~~~~~------ 398 (430)
+.++++++.+++++.|+++ ..++.+..+++.|+++++++. .+.... ...+..+++.|+++||++.+++
T Consensus 343 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~ 421 (452)
T 3n5m_A 343 LIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELV-NDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGY 421 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEE-EETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEe-cCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCC
Confidence 9999999999999999887 677888889999999999886 432211 1224678999999999999874
Q ss_pred -CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 399 -NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 -~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++||+|++.+|+++|++++++|++++.+
T Consensus 422 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 422 NNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999998865
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-59 Score=459.80 Aligned_cols=399 Identities=26% Similarity=0.403 Sum_probs=345.5
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ |+||.||++||||++++++++|||+||+|++|+.++++++.++....+.++...+++++|++.+
T Consensus 44 ~~~p~~~~~~~G~---~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~ 120 (453)
T 4ffc_A 44 STAPVYAVDADGG---VIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALT 120 (453)
T ss_dssp CSCSSCEEEEETT---EEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHS
T ss_pred CCCCceEEeeecC---EEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhC
Confidence 3678999999998 7999999999999999999999999999999999999887655445678899999999999998
Q ss_pred CCC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCC
Q psy14484 91 QYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 168 (430)
+.. .++|+|++||+||++.|+++++.++ ++++||+++++|||++..++++++.. .++..+.++..++..+++
T Consensus 121 ~~~~~~~v~~~~sGseA~~~alk~a~~~~------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (453)
T 4ffc_A 121 PGDHDKRTALFNSGAEAVENAIKVARLAT------GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPA 194 (453)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECC
T ss_pred CCCCCcEEEEeCcHHHHHHHHHHHHHHhc------CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCC
Confidence 744 5799999999999999999998764 78999999999999999999888765 677778887778888888
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
|..++.+.+.+.++....+++.|++.+. ++++++|++|| +++++|.++++++|+++|+++|++||++||+||+|+||
T Consensus 195 ~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 271 (453)
T 4ffc_A 195 SYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF 271 (453)
T ss_dssp CCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred CccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCC
Confidence 8665554444433333335677777664 35799999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+++|+++++++++++.++|+.++++
T Consensus 272 g~~g~~~a~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~i~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~~~ 344 (453)
T 4ffc_A 272 ARTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYA------GGLGGTYGGNPVTCAAAVAALGVMREL 344 (453)
T ss_dssp TTTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTTSCT------TSSCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred CcccccchhhhcCCCcchHhhhhhhcCC-cCeEEEEECHHHHhhhcc------cCcCCCCCcCHHHHHHHHHHHHHhhhh
Confidence 9999888888899999999999999998 899999999999888765 347899999999999999999988778
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC--ccchhHHHHHHHHHHHCCcEEeecC---CEEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG---NTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR 402 (430)
++.++++++.+++++.|+++ ..++.+..+++.|+++++++. ... ......+..+++.|+++||++.+++ +.+|
T Consensus 345 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 423 (453)
T 4ffc_A 345 DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV-KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIR 423 (453)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEB-CTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEe-cCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEE
Confidence 99999999999999999887 677888888999999999986 411 1122235789999999999998864 7999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.+++++|++++++|++++.++.
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-61 Score=502.56 Aligned_cols=413 Identities=26% Similarity=0.457 Sum_probs=335.6
Q ss_pred CceeEEeecCCceeEEEECCCC----EEEecccccccccCCCC-CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGK----RYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~----~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (430)
.|+++.+++|. |+|+||.||+ +||||+++||++++||+ ||+|.+|+++|+.++.+.+...+.++...+|+++|+
T Consensus 356 ~p~~i~~a~G~-g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~ 434 (831)
T 4a0g_A 356 TVTVIDSRCGE-NFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLL 434 (831)
T ss_dssp GCEEEEEEETT-EEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHH
T ss_pred CCeEEEEeecc-ceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHH
Confidence 57899999985 5689999999 99999999999999999 999999999999998776555677899999999999
Q ss_pred hhcCCC-CCeEEEcCCchHHHHHHHHHH-HHhhhhcCCC--------CCcEEEEEcCCCCCcchhhhccCCCccchhh--
Q psy14484 88 SLTQYK-LGHCFYGSDGASAVEVALKMS-FHYWYNKGFL--------NKKKFICLQNSYHGETLGALAVTNIQSFKEI-- 155 (430)
Q Consensus 88 ~~~~~~-~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~--------~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~-- 155 (430)
+..|.+ .++++|++||+|||+.|+|++ +.++..+|.+ +|.+||.++++|||.+.+++++++.+.|+..
T Consensus 435 ~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~ 514 (831)
T 4a0g_A 435 DGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQ 514 (831)
T ss_dssp HTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTT
T ss_pred HhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccc
Confidence 999744 789999999999999999999 5677777753 5789999999999999999999987766541
Q ss_pred ------hhccC--------CCeeEeCCCCCCCCCC-C----CC----------hhHHHHHHHHHHHHHHHh-----CCCC
Q psy14484 156 ------YTSLL--------NKTYIITTPDSRNINK-G----NS----------ANEIARCAIFDLEILLKK-----NHNK 201 (430)
Q Consensus 156 ------~~~~~--------~~~~~~~~~~~~~~~~-~----~~----------~~~~~~~d~~~le~~l~~-----~~~~ 201 (430)
+.+.. .+..+++.|+.++... + .+ ..+.....+++|++.|++ .+++
T Consensus 515 ~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~ 594 (831)
T 4a0g_A 515 QPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAH 594 (831)
T ss_dssp CTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CE
T ss_pred cccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCc
Confidence 11110 1234455665443321 0 01 111223356788888863 3578
Q ss_pred eEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCcccc
Q psy14484 202 IAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPL 280 (430)
Q Consensus 202 ~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~i 280 (430)
+++||+|| + ++++|.++|+++|+++|+++|++||++||+||||+||||+|.+|+++++++.||++|+||+|+|||+|+
T Consensus 595 iaavi~Ep-vvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitlsK~L~gG~~Pl 673 (831)
T 4a0g_A 595 VGALIIEP-VIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPL 673 (831)
T ss_dssp EEEEEECC-SEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEECGGGGTTSSCC
T ss_pred EEEEEEec-ccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEecccccCccCc
Confidence 99999999 6 999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----HH-HchhcCCCee
Q psy14484 281 SLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK----AL-TSLITHPKII 355 (430)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~----~l-~~l~~~~~~~ 355 (430)
|++++++++++.+....+.+.+.|++||+++|++|++++++|++++++++.++++++++++++ .+ +.+..++.+.
T Consensus 674 gav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~ 753 (831)
T 4a0g_A 674 AVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQ 753 (831)
T ss_dssp EEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEE
T ss_pred EEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCce
Confidence 999999999998875333456779999999999999999999999887777777655555432 23 3335568888
Q ss_pred eEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 356 NFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++.|+|+++++. .+... ....+..+.+.|+++||++.|.++.+||+|++.+|+++|++++++|++++.++
T Consensus 754 ~vrg~Gl~~~iel~-~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 754 RVVVIGTLFALELK-ADASNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp EEEEETTEEEEEEC----------CHHHHHHHHHHHHTTEECCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred eEeecccEEEEEEe-cCccccccchHHHHHHHHHHHHCCcEEEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 54210 11235679999999999999999999999999999999999999999988754
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-58 Score=455.93 Aligned_cols=398 Identities=26% Similarity=0.391 Sum_probs=340.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|. |+||.||++||||.+++++++|||+||+|++|+.+++.++.+.....+.++...+++++|++.++
T Consensus 42 ~~p~~~~~g~G~---~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~ 118 (451)
T 3oks_A 42 TMPVYAVRAGGG---IVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTP 118 (451)
T ss_dssp SCSSCEEEEETT---EEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSS
T ss_pred CCCceEEEeecC---EEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCC
Confidence 678999999988 79999999999999999999999999999999999998876554456788999999999999987
Q ss_pred CC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCC
Q psy14484 92 YK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (430)
.. .++++|++||+||++.|+++++.++ ++++||+++++|||++..++++++.. .++..+.+...++.++++|
T Consensus 119 ~~~~~~v~~~~sGseA~~~Alk~a~~~~------g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (451)
T 3oks_A 119 VRGDKRSALFNSGSEAVENAVKIARSHT------HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLS 192 (451)
T ss_dssp CCSSEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCC
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHHHHhc------CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCC
Confidence 43 5799999999999999999999864 78999999999999999999888764 6777787777788888877
Q ss_pred CCCCCCC-CCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 170 DSRNINK-GNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 170 ~~~~~~~-~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
..++.+. +.+.+.+...+++.+++.+++. ++++++|++|| +++++|.+.++++|+++|+++|++||++||+||+|+
T Consensus 193 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep-~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 271 (451)
T 3oks_A 193 YPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT 271 (451)
T ss_dssp CHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4333211 1121122223566666666542 36799999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||+++|..++++.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+++++++++++.++|+.++
T Consensus 272 g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G-~~iG~v~~~~~~~~~~~~------~~~~~t~~~~~~~~aaa~aal~~~~ 344 (451)
T 3oks_A 272 GFARTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHV------SGLGGTYGGNPIACAAALATIETIE 344 (451)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEECGGGGTT-SSCEEEEEEHHHHTCSCT------TSBCCSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhhhcCCCCCeeeehhhhhCC-cceEEEEECHHHHhhhcC------CCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999888889999999999999999998 899999999999887764 3488999999999999999999887
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCC--ccchhHHHHHHHHHHHCCcEEeecC---CE
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRPIG---NT 400 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~a~~~~~~l~~~Gv~~~~~~---~~ 400 (430)
++++.++++++.+++++.|+++ ..++.+..+++.|+++++++. +.. ......+..+++.|+++||++.+++ +.
T Consensus 345 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 423 (451)
T 3oks_A 345 SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELV-KAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNV 423 (451)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEB-STTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEe-cCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCE
Confidence 7899999999999999999887 677888889999999999986 411 0122235789999999999999864 79
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+||+|++.+++++|++++++|++++.+
T Consensus 424 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 424 VRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998864
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=445.06 Aligned_cols=410 Identities=25% Similarity=0.422 Sum_probs=328.9
Q ss_pred CcccccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHH
Q psy14484 1 MNNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (430)
|++++. .+...|.++.+++|+ +++|.||++||||.+++++++|||++|+|++++.+++++..+.....++++...
T Consensus 1 ~~~~~~--~~~~~~~~~~~~~G~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (430)
T 3i4j_A 1 MSNVFY--RSSKPYPVAVRGEGV---FLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLE 75 (430)
T ss_dssp --CBCC--SSSSCCCEEEEEEBT---EEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHH
T ss_pred CCcccc--CCCCCCceEEeeecC---EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHH
Confidence 566653 336688999999888 799999999999999999999999999999999999988765554567888999
Q ss_pred HHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccC
Q psy14484 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 160 (430)
Q Consensus 81 ~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
+++++|++.++.++++|+|++||+||++.|+++++.++..+|.++++.||+++++|||++..+..+++.+.++..+.++.
T Consensus 76 ~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 155 (430)
T 3i4j_A 76 EYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLM 155 (430)
T ss_dssp HHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------
T ss_pred HHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcC
Confidence 99999999998788999999999999999999999887777777889999999999999988888877766666666666
Q ss_pred C--CeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcC
Q psy14484 161 N--KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 161 ~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
. +...+++++.++. ...|+++|++++++.. +++++|++|| +++ ++|.++++++++++|.++|++||
T Consensus 156 ~~~~~~~~~~~~~~~~---------~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~~~G~~~~~~~~l~~l~~l~~~~~ 225 (430)
T 3i4j_A 156 RPEAWPKLPKPDPARN---------GAEDAEGLRALLEREGPETVAAFMAEP-VVGASDAALAPAPGYYERVRDICDEAG 225 (430)
T ss_dssp CGGGSCEECCCCTTSC---------HHHHHTHHHHHHHHHCGGGEEEEEECS-SCCGGGTTCCCCTTHHHHHHHHHHHHT
T ss_pred CCCCceEcCCCcccch---------hhHHHHHHHHHHHhcCCCCEEEEEEcC-cccCcCCcccCCHHHHHHHHHHHHHcC
Confidence 6 6677777654432 1237889999997642 5799999999 999 99999999999999999999999
Q ss_pred CEEEEeccccCCCCcccccccccC-CCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 315 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 315 (430)
++||+||+|+||+++|..++++.+ ++.||+++|||++++|++|+|++++++++++.+.. ..+.+.+++|++++++++
T Consensus 226 ~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~--~~~~~~~~~t~~~~~~~~ 303 (430)
T 3i4j_A 226 IIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG--GSGAFMHGFTYAGHPVSV 303 (430)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHH--TTCBCCCCCTTTTCHHHH
T ss_pred CEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhc--cCCcccccCCCCCCHHHH
Confidence 999999999999999988888888 99999999999999986899999999999988875 223456889999999999
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccc-----hhHHHHHHHHHHH
Q psy14484 316 CAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI-----ETFSKKFFVAALK 389 (430)
Q Consensus 316 ~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~a~~~~~~l~~ 389 (430)
+++.++|+.++++++.++++++.+++++.|+++ ..++.+..+++.|+++++++. +.. .. ...+.++++.|++
T Consensus 304 aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~ 381 (430)
T 3i4j_A 304 AAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG-DLA-TGQAFETPGIASRIGAAALK 381 (430)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEec-ccc-ccCCCccHHHHHHHHHHHHh
Confidence 999999998877889999999999999999887 577888888999999999886 321 11 1113679999999
Q ss_pred CCcEEeec--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 390 NELLLRPI--------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 390 ~Gv~~~~~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+||++.++ ++++||++++.++++++++++++|++++++++
T Consensus 382 ~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 429 (430)
T 3i4j_A 382 RGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALEDVL 429 (430)
T ss_dssp TTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999886 57899999999999999999999999998875
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-54 Score=419.33 Aligned_cols=380 Identities=29% Similarity=0.479 Sum_probs=334.3
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
+..+.+.|.++.+++|+ ++||.||++||||.+++++++|||+||+|++++.+++++..+.. ..+.++...++++++
T Consensus 12 ~~~~~~~~~~~~~~~G~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l 87 (395)
T 3nx3_A 12 IPTYKRFDIVLEKGQGV---YLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNL 87 (395)
T ss_dssp BCGGGSCSCBEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHH
T ss_pred hhccCCCCceEEeeeee---EEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHH
Confidence 34566789999999888 79999999999999999999999999999999999998765433 346788999999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.++ .++++|++||+||++.|+++++.++..+| +++++||+++++|||++..+...++.+.++..+.+...+...+
T Consensus 88 a~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (395)
T 3nx3_A 88 AKASA--LERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFA 164 (395)
T ss_dssp HHHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEE
T ss_pred HHhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEe
Confidence 99984 78999999999999999999987755544 3678999999999999999998888777777777777777777
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+++ |+++|+++++ +++++|+++| +++++|.++|+++++++|.++|++||++||+||+|+
T Consensus 165 ~~~-----------------d~~~l~~~l~---~~~~~v~~~~-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~ 223 (395)
T 3nx3_A 165 KYN-----------------DISSVEKLVN---EKTCAIILES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC 223 (395)
T ss_dssp CTT-----------------CHHHHHTTCC---TTEEEEEEES-EECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred CCC-----------------CHHHHHHhcc---CCeEEEEEeC-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 654 7899998885 6799999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
||+++|..++.+.+++.||+++|||++++| +|+|++++++++ ++.+.. ..++.|+++++++++++.++|+.+
T Consensus 224 ~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G-~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~aal~~~ 296 (395)
T 3nx3_A 224 GMGRSGKFFAYEHAQILPDIMTSAKALGCG-LSVGAFVINQKVASNSLEA------GDHGSTYGGNPLVCAGVNAVFEIF 296 (395)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEECGGGTTT-SCCEEEEECHHHHHHHSCT------TCCSSCBSCCHHHHHHHHHHHHHH
T ss_pred CCCcCCcchhHHhcCCCCCEEEecccccCC-CceEEEEEchhhhhhhcCC------cccCCCCCCCHHHHHHHHHHHHHH
Confidence 999999888888889999999999999988 799999999998 777765 357789999999999999999988
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEE
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYL 403 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~ 403 (430)
+++++.++++++.+++++.|+++ ..++.+..+++.|.++++++. +... +..+.+.|+++||++.++ ++++||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~l~~~Gi~v~~~~~~~iRi 370 (395)
T 3nx3_A 297 KEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLD-KSVK-----VAKVIQKCQENALLLISCGENDLRF 370 (395)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-TTSC-----HHHHHHHHHHTTEECEEETTTEEEE
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeC-Ccch-----HHHHHHHHHHCCCEEecCCCCEEEE
Confidence 77889999999999999999887 567777778899999999887 5311 467899999999999987 489999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+|++.+|++++++++++|++++++
T Consensus 371 ~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 371 LPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998865
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-54 Score=420.24 Aligned_cols=381 Identities=27% Similarity=0.414 Sum_probs=322.5
Q ss_pred cCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhh
Q psy14484 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 89 (430)
+.+.|.++.+++|. ++||.||++||||.+|+++.+|||+||+|++|+.+++++..+... .+.++...++++.|++.
T Consensus 55 ~~~~~~~~~~~~G~---~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~~ 130 (439)
T 2oat_A 55 YHPLPVALERGKGI---YLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITKL 130 (439)
T ss_dssp CCCCSCEEEEEEBT---EEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT-TSEESSHHHHHHHHHHH
T ss_pred cCCCCeeEEeeecC---EEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHHh
Confidence 34568889999887 799999999999999999999999999999999999987654322 35567788999999999
Q ss_pred cCCCCCeEEEcCCchHHHHHHHHHHHHhhh-hcC-CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWY-NKG-FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 90 ~~~~~~~v~~~~sgteA~~~al~~~~~~~~-~~g-~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+ +.++++|++||+||++.|+++++.+.. .+| .+++++||+++++|||++..++..++.+.++..+.++..++..++
T Consensus 131 ~--g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~ 208 (439)
T 2oat_A 131 F--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIP 208 (439)
T ss_dssp H--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEEC
T ss_pred c--CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeC
Confidence 8 578999999999999999999886432 122 235589999999999998877777765555555666656666665
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
++ |+++|+++++ .+++++|++|| +++++|.++++++++++|.++|++||++||+||+|+|
T Consensus 209 ~~-----------------d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g 268 (439)
T 2oat_A 209 YN-----------------DLPALERALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTG 268 (439)
T ss_dssp SS-----------------CHHHHHHHTT--STTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred CC-----------------CHHHHHHHhC--CCCEEEEEEEC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 54 7899999985 25799999999 9999998999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|+++|..++++.+++.||+++|||++++|++|+|++++++++++.+.. ..+++||++++++++++.++|+.+++
T Consensus 269 ~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~ 342 (439)
T 2oat_A 269 LARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHGSTYGGNPLGCRVAIAALEVLEE 342 (439)
T ss_dssp TTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred CccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccCC------CCcccCCCcCHHHHHHHHHHHHHHhh
Confidence 999998888888899999999999999885799999999998877754 34678999999999999999998877
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
+++.++++++++++++.|+++ .++.+..+++.|.++++++. .+.... +.++++.|+++||++.+. ++++||+|+
T Consensus 343 ~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~g~~~~v~l~-~~~~~~---~~~l~~~l~~~Gv~v~~~~~~~iRi~~~ 417 (439)
T 2oat_A 343 ENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIK-ETKDWD---AWKVCLRLRDNGLLAKPTHGDIIRFAPP 417 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHTTS-CTTTEEEEEEETTEEEEEEC-CCSSCC---HHHHHHHHHHTTEECCBSSSSEEEECCC
T ss_pred hhHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeeeEEEEEEe-cCccHH---HHHHHHHHHHCCeEEecCCCCEEEEECc
Confidence 789999999999999999887 45655567889999999887 531111 357999999999999986 489999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+.++++++++++++|++++.+
T Consensus 418 ~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 418 LVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-54 Score=420.82 Aligned_cols=378 Identities=19% Similarity=0.260 Sum_probs=315.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|+ ++||.||++||||.+++|+++|||+||+|++|+.+++.+.. .+.++++...+++++|++.++
T Consensus 36 ~~p~~~~~~~G~---~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~ 109 (434)
T 3l44_A 36 GAPIAMERGKGA---YFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV---LYGTPTALEVKFAKMLKEAMP 109 (434)
T ss_dssp SCCCCEEEEEBT---EEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS---CCSSCCHHHHHHHHHHHHHCT
T ss_pred CCCceEEEeecC---EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc---CCCCCCHHHHHHHHHHHHhCC
Confidence 678999999888 79999999999999999999999999999999999998743 235778899999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh--h-----ccCCCee
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY--T-----SLLNKTY 164 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~--~-----~~~~~~~ 164 (430)
++++++|++||+||++.|+++++.+. ++++||+++++|||++..++..++........ . .......
T Consensus 110 -~~~~v~~~~sGsea~~~ai~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (434)
T 3l44_A 110 -ALDKVRFVNSGTEAVMTTIRVARAYT------GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVI 182 (434)
T ss_dssp -TCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEE
T ss_pred -CCCEEEEeCchHHHHHHHHHHHHHhh------CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceE
Confidence 78999999999999999999998764 78899999999999988777766532211000 0 0001222
Q ss_pred EeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 165 IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
.+++ +|+++|+++++++++++++|++|| +++++|.+.|+++++++|.++|++||++||+||+
T Consensus 183 ~~~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv 244 (434)
T 3l44_A 183 TVPF-----------------NNVETLKEALDKWGHEVAAILVEP-IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244 (434)
T ss_dssp EECT-----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred ecCc-----------------ccHHHHHHHHHhCCCCEEEEEEcC-CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 3322 278999999987656899999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|+|| ++|..++++.+++.||+++|||++++| +|+|++++++++++.+.. .....+++|+++++++++++.++|+.
T Consensus 245 ~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~i~~~~~~---~~~~~~~~t~~~~~~a~aaa~aal~~ 319 (434)
T 3l44_A 245 ITAF-RFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAP---LGPAYQAGTMAGNPASMASGIACLEV 319 (434)
T ss_dssp TTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred ccce-eccccHHHHHcCCCCCeeehhhhhcCC-cCeeeEEEcHHHHHhhcc---CCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 9999 888877788889999999999999988 799999999999888764 23356788999999999999999998
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEEe
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~~ 395 (430)
++++++.++++++.+++++.|+++ ..++.+..+++.|.++.+++. .... .....+..+++.|+++||++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 398 (434)
T 3l44_A 320 LQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFT-TNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLA 398 (434)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEES-SSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECC
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEe-cCcccchhhccccCHHHHHHHHHHHHHCCeEEe
Confidence 877889999999999999999887 556666678899999999885 3211 011224678999999999999
Q ss_pred ecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 396 PIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 396 ~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++ +.+|+ ++.+|++++++++++|++++.++
T Consensus 399 ~~~~~~~rl--~~~~t~e~i~~~l~~l~~~l~~~ 430 (434)
T 3l44_A 399 PSKYEAWFL--TTEHTKEDIEYTIEAVGRAFAAL 430 (434)
T ss_dssp SSTTCCEEC--CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcEEE--ecccCHHHHHHHHHHHHHHHHHH
Confidence 875 56676 67899999999999999998865
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-54 Score=419.63 Aligned_cols=382 Identities=26% Similarity=0.390 Sum_probs=305.9
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
.+.|.++.+++|+ ++||.||++||||.+|+++.+|||+||+|++|+.++++++.+.. ..+.++...++++.|++.+
T Consensus 45 ~~~~~~~~~~~g~---~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~ 120 (433)
T 1z7d_A 45 DPIPVVLKRAKGV---FVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS-RAFFSVPLGICERYLTNLL 120 (433)
T ss_dssp CCEEEEEEEEEBT---EEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC-TTSEEHHHHHHHHHHHHHH
T ss_pred CCCCceEEeeecC---EEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCcc-CCcCCHHHHHHHHHHHhhc
Confidence 3457888999887 79999999999999999999999999999999999998765432 2456788899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhh-hcC-CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWY-NKG-FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~-~~g-~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
+.++++|++||+||++.|+++++.+.. .+| .+++++||+++++|||++..++.+++.+.++..+.++..++..+++
T Consensus 121 --g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~ 198 (433)
T 1z7d_A 121 --GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY 198 (433)
T ss_dssp --TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT
T ss_pred --CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC
Confidence 578999999999999999999875421 222 1356899999999999987777766655555555555555556554
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|+++++ .+++++|++|| +++++|.++++++++++|.++|++||++||+||+|+||
T Consensus 199 ~-----------------d~~~le~~l~--~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 258 (433)
T 1z7d_A 199 D-----------------DLEALEEELK--DPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGL 258 (433)
T ss_dssp T-----------------CHHHHHHHHT--STTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred C-----------------CHHHHHHHhC--CCCEEEEEEEC-CCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCC
Confidence 3 7899999995 25799999999 99999988999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|..++++.+++.||+++|||++++|++|+|++++++++++.+.. ..++.||++++++++++.++|+.++++
T Consensus 259 g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~------~~~~~t~~~~~~~~aaa~aal~~~~~~ 332 (433)
T 1z7d_A 259 GRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLINE 332 (433)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred CcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc------ccccccCCCCHHHHHHHHHHHHHHHhc
Confidence 99998888888899999999999999885799999999998877754 346789999999999999999988777
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
++.+++++++++++++|+++ ..++.+..+++.|.++++++. .+.. . +.++++.|+++||++.++ ++++|++|+
T Consensus 333 ~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~-~~~~--~--~~~~~~~l~~~Gv~v~~~~~~~iRi~~~ 407 (433)
T 1z7d_A 333 KLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK-NELV--N--VLDICLKLKENGLITRDVHDKTIRLTPP 407 (433)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEEC-TTTC--C--HHHHHHHHHHTTEECCEETTTEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEc-cChh--H--HHHHHHHHHHCCeEEecCCCCEEEEECC
Confidence 89999999999999999887 466766678889999999887 5311 1 367999999999999987 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+.++++++++++++|++++.++.
T Consensus 408 ~~~t~e~i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 408 LCITKEQLDECTEIIVKTVKFFD 430 (433)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987753
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-54 Score=422.89 Aligned_cols=411 Identities=26% Similarity=0.430 Sum_probs=338.1
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC-CCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-NLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~ 91 (430)
.|+++.+++|+ ++||.+|++|+||.+++|++++||++|+|++|+.+++.+.. .... .+..+...++++.|++.++
T Consensus 32 ~~~~~~~~~g~---~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~ 107 (449)
T 3a8u_X 32 DPRLIVAAEGS---WLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQYGHPLSFQLAEKITDLTP 107 (449)
T ss_dssp SCCCEEEEEBT---EEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSCCCHHHHHHHHHHHTTSS
T ss_pred CCceEEeeecC---EEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-CccccccCCHHHHHHHHHHHHhCC
Confidence 58899999887 79999999999999999999999999999999999987754 2222 5777888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.++++|+|++||+||++.|+++++.+++.+|.+++++||+++++|||++..++..++.+.++..+.+...+...++.|..
T Consensus 108 ~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~ 187 (449)
T 3a8u_X 108 GNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLL 187 (449)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCC
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCcc
Confidence 77889999999999999999999887777777788899999999999988777777666566666666666777776653
Q ss_pred CCCCC-CCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 172 RNINK-GNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 172 ~~~~~-~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
++..+ +.+.+.+...++++|++++++++ +++++|++|| +++++|.++++++++++|.++|++||++||+||+|+||+
T Consensus 188 ~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 188 ASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266 (449)
T ss_dssp GGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECS-SBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred ccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcC-ccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcc
Confidence 32211 11212223335899999997543 5789999999 999999889999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccC---CcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKN---NINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~---~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
++|..+.++.+++.||++++||++++|++|+|++++++++++.+.... ....+.++.|+++++++++++.++|+.++
T Consensus 267 ~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~ 346 (449)
T 3a8u_X 267 RTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQ 346 (449)
T ss_dssp TTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHH
Confidence 988767777788899999999999988679999999999988876511 01233567899999999999999999887
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCC
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPP 406 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~ 406 (430)
++++.++++++.++++++|+++..++.+..+++.|.++++++. ............+.+.|+++||++.++++++||+|+
T Consensus 347 ~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~iRis~~ 425 (449)
T 3a8u_X 347 KENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIA-PRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPT 425 (449)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEEC-CBTTBSSHHHHHHHHHHHHHTEECEEETTEEEECCC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEe-cCcccccccHHHHHHHHHHCCcEEecCCCEEEEECC
Confidence 7789999999999999999887556666667888999999887 432111000235888899999999998899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+.++++++++++++|++++.+++
T Consensus 426 ~~~t~~~i~~~l~~l~~~l~~~~ 448 (449)
T 3a8u_X 426 FNSKPQDLDRLFDAVGEVLNKLL 448 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=416.44 Aligned_cols=384 Identities=20% Similarity=0.291 Sum_probs=308.2
Q ss_pred cccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q psy14484 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (430)
.|..+.+.|.++.+++|+ ++||.||++||||.+++++++|||+||+|++|+.++++++.+ ..++++...+++++
T Consensus 28 ~~~~~~~~p~~~~~~~G~---~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~la~~ 101 (429)
T 4e77_A 28 AFTGVGGIPLFIERADGA---YLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS---FGAPTEMEVKMAQL 101 (429)
T ss_dssp GTTTTCSCCCCEEEEEBT---EEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC---CSSCCHHHHHHHHH
T ss_pred cccccCCCCceEEEeecC---EEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcc---cCCCCHHHHHHHHH
Confidence 344445689999999888 799999999999999999999999999999999999987532 24678899999999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh--h-----hhc
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE--I-----YTS 158 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~--~-----~~~ 158 (430)
|++.++ +.++++|++||+||++.|+++++.++ ++++||+++++|||++...+...+...... + ...
T Consensus 102 l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (429)
T 4e77_A 102 VTDLVP-TMDMVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTD 174 (429)
T ss_dssp HHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCC------------------CCCTTSCGG
T ss_pred HHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhh------CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCc
Confidence 999998 78999999999999999999988764 788999999999999875443332111100 0 000
Q ss_pred cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCE
Q psy14484 159 LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIH 238 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~ 238 (430)
........++ +|+++|+++++++++++++|++|| +++++|.+.++++|+++|.++|++||++
T Consensus 175 ~~~~~~~~~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~g~~~~~~~~l~~l~~l~~~~~~l 236 (429)
T 4e77_A 175 FAKHTLTCTY-----------------NDLASVRQAFEQYPQEVACIIVEP-VAGNMNCIPPLPEFLPGLRALCDEFGAL 236 (429)
T ss_dssp GGTTEEEECT-----------------TCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHTCE
T ss_pred cCCceeecCC-----------------CCHHHHHHHHHhcCCCEEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 0111122222 378999999987767899999999 9999999999999999999999999999
Q ss_pred EEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 239 LIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 239 li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
||+||+|+|| ++|..++.+.+++.||+++|||++++| +|+|++++++++++.+.. .....+++||++++++++++
T Consensus 237 li~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G-~~~G~~~~~~~~~~~l~~---~~~~~~~~t~~~~~~~~aaa 311 (429)
T 4e77_A 237 LIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAP---TGPVYQAGTLSGNPIAMAAG 311 (429)
T ss_dssp EEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTT-SCCEEEEECHHHHTTBTT---TSSBCC--CCCCCHHHHHHH
T ss_pred EEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCC-CCeEEEEECHHHHHHhcc---CCCccccCCCCCCHHHHHHH
Confidence 9999999999 998888888899999999999999988 799999999999888765 22345788999999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc-c--------chhHHHHHHHHHH
Q psy14484 319 LATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE-Q--------IETFSKKFFVAAL 388 (430)
Q Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~-~--------~~~~a~~~~~~l~ 388 (430)
.++|+.++++++.++++++.+++++.|+++ ..++....+++.|+++++++. .+.. . ....+..+++.|+
T Consensus 312 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (429)
T 4e77_A 312 FACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFT-NADTVTCYQDVMNCDVERFKRFFHLML 390 (429)
T ss_dssp HHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECC-SSSCCCSHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEc-cCcccccccccccccHHHHHHHHHHHH
Confidence 999998877889999999999999999887 556666678899999999987 5311 0 1112467899999
Q ss_pred HCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 389 KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 389 ~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++||++.+++.. |+++++.+|++++++++++|++++.+
T Consensus 391 ~~Gi~v~~~~~~-~~~~~~~~t~e~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 391 EEGVYLAPSAFE-AGFMSLAHSNEDIQKTVNAARRCFAK 428 (429)
T ss_dssp HTTEECCSSTTS-CEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred HCCeEEeecCCC-CEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 999999987521 34558899999999999999998864
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=417.13 Aligned_cols=391 Identities=24% Similarity=0.397 Sum_probs=324.8
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
..|.++.+++|+ +++|.+|++||||.+++++.+|||+||+|++++.+++.+..++....+.++...+++++|++.++
T Consensus 24 ~~~~~~~~~~G~---~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 100 (439)
T 3dxv_A 24 FFPLAISGGRGA---RLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFP 100 (439)
T ss_dssp SSCCEEEEEEBT---EEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTT
T ss_pred CCCceEEEeeeC---EEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCC
Confidence 478999999888 79999999999999999999999999999999999998865444456778999999999999997
Q ss_pred CCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc--chhhhhccCCCeeEeCC
Q psy14484 92 YKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS--FKEIYTSLLNKTYIITT 168 (430)
Q Consensus 92 ~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 168 (430)
.+. ++++|++||++|++.|+++++.+. ++++||+++++|||++..+..+++... ++..+.++..+...+++
T Consensus 101 ~~~~~~v~~~~ggsea~~~al~~~~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (439)
T 3dxv_A 101 GEGTHKIWFGHSGSDANEAAYRAIVKAT------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPY 174 (439)
T ss_dssp CTTTEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSS
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHh------CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCC
Confidence 667 799999999999999999987654 778999999999999998888877655 66666665544555555
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHH-hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLK-KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~-~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
++.+... .. ..|+++|+++++ .+++++++|+++| +++++|.+.++++++++|.++|++||++||+||+|+|
T Consensus 175 ~~~~~~~---~~----~~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g 246 (439)
T 3dxv_A 175 RPYRNDP---TG----DAILTLLTEKLAAVPAGSIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVG 246 (439)
T ss_dssp SCBTTBT---TS----HHHHHHHHHHHHTSCTTCEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTC
T ss_pred Ccccccc---cH----HHHHHHHHHHHHhcCCCCEEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 5432211 11 117899999994 3346899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|+++|..++.+.+++.||+++|||++++| +|+|++++++++++.+.. ..+.+|+ +++++++++.++|+.+++
T Consensus 247 ~g~~g~~~~~~~~~~~~di~s~sK~~~~G-~riG~~~~~~~~~~~~~~------~~~~~t~-~~~~~~~aa~aal~~~~~ 318 (439)
T 3dxv_A 247 LARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDCASA------FAMQTLH-GNPISAAAGLAVLETIDR 318 (439)
T ss_dssp TTTTSSSSGGGGTTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTSCSS------SSCCTTT-TCHHHHHHHHHHHHHHHH
T ss_pred CCcCchhhHHHhcCCCCCEEEEcchhcCC-cceEEEEECHHHHhhhcC------CCcCCCc-ccHHHHHHHHHHHHHHHh
Confidence 99999877888889999999999999988 699999999999887765 3467888 999999999999998877
Q ss_pred cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeecC---CE
Q psy14484 328 DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NT 400 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~~---~~ 400 (430)
+++.++++++.+++++.|+++ ..++.+..+++.|.++++++. .+.. .....+..+++.|+++||++.+++ ++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~ 397 (439)
T 3dxv_A 319 DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELV-CDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNV 397 (439)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEE-EETTTTEECHHHHHHHHHHHHHHTEECEEESTTSCE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCE
Confidence 889999999999999999887 567777788899999999885 3211 112225678999999999999875 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+|++.++++++++++++|++++.++
T Consensus 398 iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 398 LEFTPPLTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=418.91 Aligned_cols=385 Identities=20% Similarity=0.277 Sum_probs=318.1
Q ss_pred cccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHH
Q psy14484 4 IVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS 83 (430)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (430)
.+.|......|.++.+++|+ ++||.||++||||++++++++|||+||+|++|+.++++++.. .+++++...+++
T Consensus 26 ~~~~~~~~~~p~~~~~~~G~---~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~ 99 (429)
T 3k28_A 26 VRAFKSVGMNPLFMERGKGS---KVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS---FGAPTEIENKLA 99 (429)
T ss_dssp GGGCGGGTCCCCCEEEEEBT---EEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC---CSSCCHHHHHHH
T ss_pred cccccccCCCCceEEEeecC---EEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC---cCCCCHHHHHHH
Confidence 34444445789999999888 799999999999999999999999999999999999987542 357788999999
Q ss_pred HHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh--hc---
Q psy14484 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY--TS--- 158 (430)
Q Consensus 84 ~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~--~~--- 158 (430)
+++++.++ ++++++|++||+||++.|+++++.+. ++++||+++++|||++..++..++........ .+
T Consensus 100 ~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 172 (429)
T 3k28_A 100 KLVIERVP-SIEIVRMVNSGTEATMSALRLARGYT------GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVP 172 (429)
T ss_dssp HHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCC
T ss_pred HHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCC
Confidence 99999987 78999999999999999999998764 78899999999999988777665532211000 00
Q ss_pred --cCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 159 --LLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.......+++ +|+++|+++++++++++++|++|| +++++|.+.|+++++++|.++|++||
T Consensus 173 ~~~~~~~~~~~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~~ 234 (429)
T 3k28_A 173 EGVAKNTITVAY-----------------NDLESVKYAFEQFGDDIACVIVEP-VAGNMGVVPPQPGFLEGLREVTEQNG 234 (429)
T ss_dssp HHHHTTEEEEET-----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHHT
T ss_pred CcccCceeecCC-----------------CCHHHHHHHHHhCCCCEEEEEEcC-CCCCCCcccCCHHHHHHHHHHHHHcC
Confidence 0011222222 378999999987656899999999 99999999999999999999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 316 (430)
++||+||+|+|| ++|..++.+.+++.||+++|||++++| +|+|++++++++++.+.. .....+++|+++++++++
T Consensus 235 ~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~iG~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~a~a 309 (429)
T 3k28_A 235 ALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAP---SGPIYQAGTLSGNPLAMA 309 (429)
T ss_dssp CEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHH
T ss_pred CEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCC-CCeEEEEEcHHHHhhhcc---CCCccccCCCCCChHHHH
Confidence 999999999999 888877788889999999999999888 799999999999888764 233557889999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHH
Q psy14484 317 AALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAA 387 (430)
Q Consensus 317 aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l 387 (430)
++.++|+.++ +++.++++++.+++++.|+++ ..++.+..+++.|+++++++. .... .....+.++++.|
T Consensus 310 aa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 387 (429)
T 3k28_A 310 AGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFT-DEPVINYDAAKSSNLQFFAAYYREM 387 (429)
T ss_dssp HHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEe-cCCcccccccccccHHHHHHHHHHH
Confidence 9999998765 678889999999999999887 566777788999999999876 4221 1112246788999
Q ss_pred HHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 388 LKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 388 ~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++||++.+++ +.+|+ ++.+|++++++++++|++++.++
T Consensus 388 ~~~Gv~v~~~~~~~~r~--~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 388 VEQGVFLPPSQFEGLFL--STVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp HHTTEECCSSTTSCBCC--CTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHCCeEEecCCCCCEEE--ECCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999874 55666 77999999999999999998764
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-53 Score=412.41 Aligned_cols=383 Identities=22% Similarity=0.267 Sum_probs=319.4
Q ss_pred cccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHH
Q psy14484 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEK 85 (430)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (430)
.|....+.|.++.+++|+ ++||.||++||||.++++++++||+||+|++|+.++++++.+ ..++++...+++++
T Consensus 27 ~~~~~~~~p~~~~~~~G~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~ 100 (427)
T 3fq8_A 27 AFKSVGGQPIVFDRVKDA---YAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS---FGAPCALENVLAEM 100 (427)
T ss_dssp GCTTTTSCCCCEEEEEBT---EEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC---CSSCCHHHHHHHHH
T ss_pred cccccCCCCceEEEeeeC---EEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC---cCCCCHHHHHHHHH
Confidence 333335689999999988 799999999999999999999999999999999999987543 23578899999999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC---
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK--- 162 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~--- 162 (430)
+++.++ ++++++|++||+||++.|+++++.+. ++++||+++++|||++..+....+.......+ +...+
T Consensus 101 l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~~~~ 172 (427)
T 3fq8_A 101 VNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPK 172 (427)
T ss_dssp HHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTC-CSCSSSCH
T ss_pred HHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCCHHHHHhcCCcccccCC-CCCCCCCC
Confidence 999998 78999999999999999999988764 77899999999999987776665533221110 11111
Q ss_pred -----eeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy14484 163 -----TYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237 (430)
Q Consensus 163 -----~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi 237 (430)
...+++ +|+++|+++++++++++++|++|| +++++|.+.++++++++|.++|++||+
T Consensus 173 ~~~~~~~~~~~-----------------~d~~~le~~l~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~ 234 (427)
T 3fq8_A 173 KTTANTLTTPY-----------------NDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDA 234 (427)
T ss_dssp HHHTTEEEEET-----------------TCHHHHHHHHHHSTTTEEEEEECS-SBCTTSCBCCCTTHHHHHHHHHHHTTC
T ss_pred cccCceeecCC-----------------CCHHHHHHHHHhCCCCEEEEEEcC-CcCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 122222 388999999988767899999999 999999999999999999999999999
Q ss_pred EEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy14484 238 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317 (430)
Q Consensus 238 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 317 (430)
+||+||+|+|| ++|..+..+.+++.||+++|||++++| +|+|++++++++++.+.. .+...+++|++++++++++
T Consensus 235 ~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G-~~~G~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~aa 309 (427)
T 3fq8_A 235 LLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---AGPMYQAGTLSGNPLAMTA 309 (427)
T ss_dssp EEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHH
T ss_pred EEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCC-cceEEEEEcHHHHHhhcc---CCCccccCCCCcCHHHHHH
Confidence 99999999999 888877778889999999999999988 799999999999988765 2345688999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc--------chhHHHHHHHHHH
Q psy14484 318 ALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ--------IETFSKKFFVAAL 388 (430)
Q Consensus 318 a~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~a~~~~~~l~ 388 (430)
+.++|+.++++++.++++++.+++++.|+++ ...+....+++.|.++++++. ..... ....+..+++.|+
T Consensus 310 ~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~ 388 (427)
T 3fq8_A 310 GIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFT-EGPVHNYEDAKKSDLQKFSRFHRGML 388 (427)
T ss_dssp HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SCCCCSHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEe-cCccccccccccccHHHHHHHHHHHH
Confidence 9999998877889999999999999999887 455555567889999999886 43211 1112467899999
Q ss_pred HCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 389 KNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 389 ~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++||++.+++. .|+++++.+|++++++++++|++++.+
T Consensus 389 ~~Gi~v~~~~~-~r~~~~~~~t~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 389 EQGIYLAPSQF-EAGFTSLAHTEEDIDATLAAARTVMSA 426 (427)
T ss_dssp HTTEECCSSTT-SCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEecCCC-CCEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence 99999998763 267789999999999999999999876
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-53 Score=413.84 Aligned_cols=383 Identities=24% Similarity=0.419 Sum_probs=321.8
Q ss_pred ccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh
Q psy14484 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (430)
.+.+.|.++.+++|+ ++||.||++||||.++++++++||++|+|++++.+++++..+.. ..+..+...+++++|++
T Consensus 35 ~~~~~~~~~~~~~g~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 110 (420)
T 2pb2_A 35 VYAPADFIPVKGKGS---RVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTS-NVFTNEPALRLGRKLID 110 (420)
T ss_dssp ----CCSCEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred cccCCCceEEeeecC---EEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHh
Confidence 445578899999888 79999999999999999999999999999999999998765432 24577889999999999
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
.+ +.++++|++||+||++.|+++++.+.+.+|.++++.||+++++||+++......++.+.++..+.++..++..+++
T Consensus 111 ~~--g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~ 188 (420)
T 2pb2_A 111 AT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF 188 (420)
T ss_dssp HS--SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT
T ss_pred hC--CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC
Confidence 98 4689999999999999999999877666666677799999999999988777766655555556666666666655
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|+++++ +++++|++|| +++++|.++++.+++++|.++|++||++||+||+|+||
T Consensus 189 ~-----------------d~~~le~~i~---~~~~~vi~~p-~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~ 247 (420)
T 2pb2_A 189 N-----------------DLHAVKAVMD---DHTCAVVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGM 247 (420)
T ss_dssp T-----------------CHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred C-----------------CHHHHHHHhc---cCceEEEEeC-CcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCc
Confidence 3 7899999885 5799999999 99998988899999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|..++++..++.||+++|||++++| +|+|++++++++++.+.. ..++.|+++++++++++.++|+.++++
T Consensus 248 ~~~g~~~~~~~~~~~~diit~sK~l~~G-~~iG~~~~~~~l~~~l~~------~~~~~t~~~~~~~~aa~~a~L~~~~~~ 320 (420)
T 2pb2_A 248 GRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHV------GSHGSTYGGNPLACAVAGAAFDIINTP 320 (420)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTCC----------CCEECCCHHHHHHHHHHHHHHSSH
T ss_pred ccCCcHHHHHhcCCCCCeEEecccccCC-CceEEEEEhHHHHHhhcC------CCcCcccCcCHHHHHHHHHHHHHHHhc
Confidence 9998877677778899999999999988 799999999998776654 236788999999999999999988767
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
++.++++++++++.+.|+++ ..++.+..+++.|.++++++. ..... . +.++.+.|+++||++.++ ++++||+|+
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~-~~~~~-~--~~~l~~~l~~~Gi~v~~~~~~~iRl~~~ 396 (420)
T 2pb2_A 321 EVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELK-PKYKG-R--ARDFLYAGAEAGVMVLNAGADVMRFAPS 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEEC-GGGTT-C--HHHHHHHHHHTTEECEESSTTEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEEC-CCchH-H--HHHHHHHHHHCCCEEEeCCCCEEEEECC
Confidence 78899999999999999887 345666667889999999887 42100 1 367999999999999987 489999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+.++++++++++++|++++++++
T Consensus 397 ~~~t~eei~~~~~~l~~~l~~~~ 419 (420)
T 2pb2_A 397 LVVEEADIHEGMQRFAQAVGKVV 419 (420)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=411.68 Aligned_cols=399 Identities=23% Similarity=0.361 Sum_probs=326.7
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++++++|+ ++||.+|++|+||.++.++.++||++|+|++++.+++.+..+. ...+.++...++++.+++.++.
T Consensus 25 ~~~~~~~~~g~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~ 100 (433)
T 1zod_A 25 EPMIIERAKGS---FVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL-FSEMLSRPVVDLATRLANITPP 100 (433)
T ss_dssp CSSCCCEEEBT---EEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC-CTTCCCHHHHHHHHHHHHHSCT
T ss_pred CCceEEEeecC---EEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccc-ccccCCHHHHHHHHHHHHhCCC
Confidence 47888888887 7999999999999999999999999999999999999876432 3467788889999999999987
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
++++|+|++||+||++.|+++++.+. ++++||+++++|||++..++..++.+ ++..+.+...+...++.|..+
T Consensus 101 ~~~~v~~~~gg~ea~~~a~~~~~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~ 173 (433)
T 1zod_A 101 GLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQSWHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTY 173 (433)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHTCCSS-CCSSSCCCCTTEEEECCCCTT
T ss_pred CcCEEEEeCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCCChhHHhhcCCc-cccccCCCCCCceEecCCccc
Confidence 78999999999999999999887543 67899999999999988877766543 333344444566677766544
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
+.+++.+.++....|+++|+++++++ ++++++|++|| +++++|.++++++++++|.++|++||++||+||+|+||+++
T Consensus 174 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p-~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~ 252 (433)
T 1zod_A 174 RPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 252 (433)
T ss_dssp SCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECS-EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC
Confidence 33221111111123789999999753 25789999999 99999988999999999999999999999999999999998
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|..++++..++.||+++|||++++| +|+|++++++++++.+.. ....+++|+++++++++++.++|+.++++++.
T Consensus 253 g~~~~~~~~~~~~di~s~sK~~~~G-~~ig~~~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~ 327 (433)
T 1zod_A 253 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHE----LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV 327 (433)
T ss_dssp SSSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHH----TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred chHhHHhhcCCCCCEEEecccccCC-CCeeEEEEhHHHHHhhcc----CCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHH
Confidence 8777777778899999999999988 799999999999888765 12335588999999999999999988778899
Q ss_pred HHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCcc---chhHHHHHHHHHHHCCcEEeecC-----CEEE
Q psy14484 332 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQ---IETFSKKFFVAALKNELLLRPIG-----NTVY 402 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~a~~~~~~l~~~Gv~~~~~~-----~~lR 402 (430)
+++++++++++++|+++ ..++.+..+++.|+++++++. .+... ....+.++++.|+++||++.+++ +++|
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lR 406 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV-KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFR 406 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEE-EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEE
Confidence 99999999999999887 456766678889999999886 42110 01124678999999999998864 7999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++.++++++++++++|++++++++
T Consensus 407 i~~~~~~t~~~i~~~l~~l~~~l~~~~ 433 (433)
T 1zod_A 407 IAPPLTVSEDEIDLGLSLLGQAIERAL 433 (433)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCcCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=405.26 Aligned_cols=398 Identities=35% Similarity=0.639 Sum_probs=323.2
Q ss_pred Ccee-EEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLV-IRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.+ +.+++|+ ++||.+|++|+||.++.+++++||.+|+|++++.+++++........+.++...++++.+++.++
T Consensus 24 ~~~~~~~~~~g~---~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 100 (429)
T 1s0a_A 24 LPVYPVVSAEGC---ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTP 100 (429)
T ss_dssp CCCEEEEEEEBT---EEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSC
T ss_pred CCceeEEeeeee---EEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCC
Confidence 3555 8888887 79999999999999999999999999999999999998754332335667888999999999998
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc-chhhhhccCCCeeEeCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 170 (430)
.++++|+|++||+||++.|+++++.++..+|.| +++||+++++||+++..+..+++... ++..+.+...+...++.|.
T Consensus 101 ~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~-~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
T 1s0a_A 101 QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA-RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQ 179 (429)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC-CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC-CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCc
Confidence 788999999999999999999887654334432 67899999999999887776665432 4445555445566666653
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g 249 (430)
.... +.+...|+++|+++++++++++++|+++| + +|++|.++|+++++++|.++|++||+++|+||+|+||+
T Consensus 180 ~~~~------~~~~~~d~~~l~~~l~~~~~~~~~vi~~p-~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g 252 (429)
T 1s0a_A 180 SRMD------GEWDERDMVGFARLMAAHRHEIAAVIIEP-IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFG 252 (429)
T ss_dssp SBC-------CCCCGGGGHHHHHHHHHHTTTEEEEEECS-SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccc------ccchHHHHHHHHHHHHhCCCCEEEEEEee-cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCc
Confidence 2100 00011388999999976545789999999 8 99999999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC
Q psy14484 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN 329 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~ 329 (430)
++|..++++..++.||+++|||++++|++|+|++++++++++.+.. ...+.+.+.+|+++|+++++++.++|+.+++++
T Consensus 253 ~~g~~~~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~-~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~ 331 (429)
T 1s0a_A 253 RTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPLACAAANASLAILESGD 331 (429)
T ss_dssp TTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHT-STTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCH
T ss_pred ccchHHHhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhc-CCCcccccCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 9887667777788999999999999875799999999999887765 212333466899999999999999999887777
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCC
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYIL 409 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~ 409 (430)
+.+++++++++++++|+++..++.+..+++.|+++++++. ... . +..+.+.|+++||.+.+.++++||+|++.+
T Consensus 332 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~~~~~-~~~--~---~~~l~~~l~~~Gi~v~~~~~~iRis~~~~~ 405 (429)
T 1s0a_A 332 WQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT-HPV--N---MAALQKFFVEQGVWIRPFGKLIYLMPPYII 405 (429)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES-SCB--C---HHHHHHHHHHTTEECCCBTTEEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEEeeEEEEEEEC-Ccc--c---HHHHHHHHHHCCCEEeccCCEEEEECCCCC
Confidence 8899999999999999887446666667788999888876 421 1 357889999999999998899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
+++++++++++|+++++++
T Consensus 406 t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 406 LPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CHHHHHHHHHHHHHHTSSG
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987543
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-52 Score=412.76 Aligned_cols=390 Identities=21% Similarity=0.326 Sum_probs=317.1
Q ss_pred EeecCCceeEEEE-CCCCEEEecccccccccCCCCCHHHH-H-HHHH---HHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 18 RSLKNSWKWSLID-VSGKRYLDAISSWWVNLFGHSNSYIN-K-ALKN---QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 18 ~~~~~~~~~~~~d-~~g~~~lD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.+++|+ ++|| .||++||||.+++++++|||+||+|+ + |+.+ ++.++.+.. +.+.++...++++.|++.++
T Consensus 40 ~~~~g~---~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~ 115 (449)
T 2cjg_A 40 TRSGGS---YLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLG 115 (449)
T ss_dssp TTCBBT---EEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHC
T ss_pred eeeeeC---EEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcC
Confidence 466665 8999 99999999999999999999999999 9 9999 777654433 35778888999999999985
Q ss_pred -CCCCeEEEcCCchHHHHHHHHHHHHhhhhc----C--CCCCcEEEEEcCCCCCcchhhhccCCC-ccchhhhhccCCCe
Q psy14484 92 -YKLGHCFYGSDGASAVEVALKMSFHYWYNK----G--FLNKKKFICLQNSYHGETLGALAVTNI-QSFKEIYTSLLNKT 163 (430)
Q Consensus 92 -~~~~~v~~~~sgteA~~~al~~~~~~~~~~----g--~~~~~~vl~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~ 163 (430)
.++++|+|++||+||++.|+++++.++..+ | .+++++||+++++|||++..++.+++. +.++..+.++..+.
T Consensus 116 ~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (449)
T 2cjg_A 116 DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPR 195 (449)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCE
T ss_pred CCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCc
Confidence 467899999999999999999988665321 1 123789999999999999988887775 44555565555555
Q ss_pred eEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy14484 164 YIITTPD--SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241 (430)
Q Consensus 164 ~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~ 241 (430)
.++++++ ..... .......++++|+++++++++++++|++|| +++++|.++++++++++|.++|++||++||+
T Consensus 196 ~~~~~~d~~~~~~~----~~~~~~~~~~~le~~i~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 270 (449)
T 2cjg_A 196 IDAPYMRPGLDEPA----MAALEAEALRQARAAFETRPHDIACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270 (449)
T ss_dssp ECCCCCCTTCCHHH----HHHHHHHHHHHHHHHHHHSTTTEEEEEECS-EETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEcCCCchhhccc----cchhhHHHHHHHHHHHHhcCCceEEEEEeC-cCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 5665543 11100 000112477889999976556899999999 9999999999999999999999999999999
Q ss_pred eccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 242 DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
||+|+|++++|..++++.+++.||+++|||++ |+|++++++++++.+.+ .......+++|+++|+++++++.++
T Consensus 271 DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~~~~l~~-~~~~~~~~~~t~~~n~~~~~aa~aa 344 (449)
T 2cjg_A 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRVDEVADN-VFAVPSRLNSTWGGNLTDMVRARRI 344 (449)
T ss_dssp ECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGGGGSTTC-TTTSTTSSCCSSSSCHHHHHHHHHH
T ss_pred eccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHHhhhhhh-cccCCcccccCCCCCHHHHHHHHHH
Confidence 99999999999877777888999999999987 79999999998876321 0011234678999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-
Q psy14484 322 LEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG- 398 (430)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~- 398 (430)
|+.++++++.+++++++++++++|+++ ..++. +..+++.|+|+.+++. .. ..+..+++.|+++||++.+++
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~~~~~l~~~Gv~v~~~g~ 418 (449)
T 2cjg_A 345 LEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLP-TT-----ADRDELIRQLWQRAVIVLPAGA 418 (449)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECS-SH-----HHHHHHHHHHHHTTEECEEETT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEEC-Ch-----HHHHHHHHHHHHCCeEEecCCC
Confidence 998877789999999999999999987 45675 6678899999998776 31 114679999999999999975
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++||+|++.+|+++|++++++|++++.++
T Consensus 419 ~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 419 DTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999998765
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=414.00 Aligned_cols=391 Identities=21% Similarity=0.313 Sum_probs=304.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccC--CCCCHHHHHHHHHHHh
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLS--NLTHKPVIKLSEKLSS 88 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~--~~~~~~~~~l~~~l~~ 88 (430)
.+.++.+++|. |+||.||++||||++|+++.+|||+||+|++|+.+++.... +.... ....++.+++++.|.+
T Consensus 45 ~~~~~~~~~G~---~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~ 121 (472)
T 1ohv_A 45 FFCNYEESRGN---YLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 121 (472)
T ss_dssp CCBCGGGCBBT---EEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGG
T ss_pred CCceEEEEEcC---EEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 34556666666 89999999999999999999999999999999999875432 21111 1134566777777888
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhh--cC----------------CCC--CcEEEEEcCCCCCcchhhhccCC
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYN--KG----------------FLN--KKKFICLQNSYHGETLGALAVTN 148 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~--~g----------------~~~--~~~vl~~~~~yhg~~~~~~~~~~ 148 (430)
.++.++++|+|++||+||++.|+++++.+++. +| .|+ +++||+++++|||++.+++.+++
T Consensus 122 ~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g 201 (472)
T 1ohv_A 122 VAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTH 201 (472)
T ss_dssp GCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCC
T ss_pred hCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCC
Confidence 77667889999999999999999999876431 22 134 58999999999999999988887
Q ss_pred CccchhhhhccCCCeeEeCCCCCCCCCCCCC--h-hHHHHHHHHHHHHHHHhCCC---CeEEEEEccccccCCCcccCCh
Q psy14484 149 IQSFKEIYTSLLNKTYIITTPDSRNINKGNS--A-NEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDS 222 (430)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~d~~~le~~l~~~~~---~~~~vi~ep~v~~~~G~~~~~~ 222 (430)
.+.++....+. .++.++++|. ++.+.... . +.....|+++|+++++++.+ ++++|++|| +++++|.++|++
T Consensus 202 ~~~~~~~~~~~-~~~~~~~~p~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~-v~~~~G~~~~~~ 278 (472)
T 1ohv_A 202 SKAIHKIDIPS-FDWPIAPFPR-LKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASD 278 (472)
T ss_dssp SCHHHHTTSCC-CCCCEECCCC-CCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS-SBCTTTCBCCCH
T ss_pred CccccccCCCC-CCCcccCCCc-ccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcC-CcCCCCCCCCCH
Confidence 65443322222 1233445542 11110000 0 11224489999999985422 799999999 999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC--Cceeeeecc-cCCCccccEEEEEcHHHHHhhhccCCc
Q psy14484 223 IYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKG-ITGGYLPLSLVMTTDKIYNSIYYKNNI 299 (430)
Q Consensus 223 ~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~--~d~~~~sK~-l~gG~~~ig~~~~~~~~~~~~~~~~~~ 299 (430)
+|+++|+++|++||++||+||+|+|||++|.+++++.+++. ||+++|||+ ++||+ ++ ++++. .+
T Consensus 279 ~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-----~~-~~~~~-~~------ 345 (472)
T 1ohv_A 279 DFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-----FH-KEEFR-PN------ 345 (472)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----EE-CGGGS-CS------
T ss_pred HHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----cC-chhhc-cc------
Confidence 99999999999999999999999999999987788888886 999999999 77653 33 55542 11
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccch
Q psy14484 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIE 377 (430)
Q Consensus 300 ~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 377 (430)
....+.+|+++++++++++.++|+.++++++.+++++++++++++|+++ .+++. +..+++.|+|+.+++. +.
T Consensus 346 ~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~-~~----- 419 (472)
T 1ohv_A 346 APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-DE----- 419 (472)
T ss_dssp SSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-SH-----
T ss_pred ccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeC-Ch-----
Confidence 2245788999999999999999998877889999999999999999887 45663 6678889999998765 31
Q ss_pred hHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 378 TFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 378 ~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..+..+++.|+++||++.+++ +++||+|++.+|+++|++++++|++++.++
T Consensus 420 ~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 420 SIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 124679999999999999875 799999999999999999999999998764
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=395.27 Aligned_cols=383 Identities=24% Similarity=0.429 Sum_probs=311.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCC-CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.|.++++++|+ ++||.+|++|+||.++.+++++||+ +|+|++|+.+++.+..+.....++++...++++.+++.++
T Consensus 24 ~~~~~~~~~g~---~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~ 100 (419)
T 2eo5_A 24 FPLVIDHGEGV---WIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSP 100 (419)
T ss_dssp CCCCEEEEEBT---EEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSS
T ss_pred CCceEEeeecC---EEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCC
Confidence 68889999887 7999999999999999999999999 9999999999997764433345778888999999999998
Q ss_pred CC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCC
Q psy14484 92 YK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTP 169 (430)
Q Consensus 92 ~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (430)
.+ +++|+|++||+||++.|+++++.+ .+++||+++++|||++..+..+++.. .++..+.+...++..++++
T Consensus 101 ~~~~~~v~~~~gg~ea~~~ai~~~~~~-------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 173 (419)
T 2eo5_A 101 GNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP 173 (419)
T ss_dssp CSSCEEEEEESSHHHHHHHHHHHHHTT-------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC
T ss_pred CCcCCEEEEeCchHHHHHHHHHHHHHh-------hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC
Confidence 66 689999999999999999988753 36789999999999988877776654 4444555555566777777
Q ss_pred CCCCCCCCCC-----hhHHHHHHHHHHH-HHHHhCC--CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEE
Q psy14484 170 DSRNINKGNS-----ANEIARCAIFDLE-ILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241 (430)
Q Consensus 170 ~~~~~~~~~~-----~~~~~~~d~~~le-~~l~~~~--~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~ 241 (430)
+.++.+++.+ .++.. .|+++|+ ++++++. +++++|++|| +++++|.++++++++++|.++|++||+++|+
T Consensus 174 ~~~~~~~g~~~~~~~~~~~~-~~~~~l~~~~i~~~~~~~~~~~vi~~p-~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~ 251 (419)
T 2eo5_A 174 NPYRNPWHINGYENPSELVN-RVIEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVD 251 (419)
T ss_dssp CSSSCTTCCCTTTCHHHHHH-HHHHHHHHTHHHHTCCGGGEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred ccccccccccccccchhhHH-HHHHHHHHHHHhhccCCCCEEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 6544332221 01111 3788999 8887531 4789999999 9999998899999999999999999999999
Q ss_pred eccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 242 DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
||+|++|+++|..++++..++.||+++|||++++|++|+|+++++++++ .+ . ..+.+|+++++++++++.++
T Consensus 252 DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~------~~~~~t~~~n~~~~~aa~aa 323 (419)
T 2eo5_A 252 DEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P------GMHSNTFGGNALACAIGSKV 323 (419)
T ss_dssp ECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC-------------CCCCCHHHHHHHHHH
T ss_pred eccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C------cccCCCCCCCHHHHHHHHHH
Confidence 9999999998876677777889999999999998757999999999877 55 3 13668999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CE
Q psy14484 322 LEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NT 400 (430)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~ 400 (430)
|+.+++ +.++++++++++.+.|+++ +..+++.|+++++++. .+ ...+. +++.|+++||++.+++ ++
T Consensus 324 l~~~~~--~~~~~~~~~~~l~~~L~~~-----~~~~~~~g~~~~i~~~-~~----~~~~~-~~~~l~~~Gv~v~~~~~~~ 390 (419)
T 2eo5_A 324 IDIVKD--LLPHVNEIGKIFAEELQGL-----ADDVRGIGLAWGLEYN-EK----KVRDR-IIGESFKRGLLLLPAGRSA 390 (419)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTTS-----SSEEEEETTEEEEECS-CH----HHHHH-HHHHHHHTTEECEEETTTE
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHh-----hhheEeeeEEEEEEEe-cC----ccHHH-HHHHHHHCCCEEecCCCCE
Confidence 987654 8888999999999988765 3456788999988774 21 11245 8889999999999985 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+|++.++++++++++++|++++.++
T Consensus 391 lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 391 IRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-56 Score=433.58 Aligned_cols=370 Identities=20% Similarity=0.251 Sum_probs=308.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|+++.+++|+ |+||.|||+||||++++++.+|||+||+|++|+.+++.++. .+.++++...+++++|++.+|
T Consensus 82 ~p~~~~~~~G~---~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~---~~~~~~~~~~~Lae~L~~~~p- 154 (465)
T 2yky_A 82 FPLVIAQGTGS---RFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL---NLSTQTENEALFAEAVCDRFP- 154 (465)
Confidence 48899999887 79999999999999999999999999999999999988742 235678888999999999997
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
+.++++|++||+||++.|+++++.++ ++++||+++++|||++...+ ++ +. .... .. ..+.+|
T Consensus 155 ~~~~v~~~nSGseA~~~Aik~ar~~t------gr~~ii~~~~~yHG~~~~~~--sg-~~-~~g~---~~--~~~~~~--- 216 (465)
T 2yky_A 155 SIDLVRFTNSGTEANLMALATATAIT------GRKTVLAFDGGYHGGLLNFA--SG-HA-PTNA---PY--HVVLGV--- 216 (465)
Confidence 77899999999999999999998764 78999999999999987766 22 10 0000 00 112222
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
++|+++|+++++++++++++|++|| +++++|.++|+++++++|+++|++||++||+||+|+ + ++|
T Consensus 217 ------------~~d~~~l~~~l~~~~~~~aavi~ep-v~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~g 281 (465)
T 2yky_A 217 ------------YNDVEGTADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RLS 281 (465)
Confidence 2489999999976556899999999 999999999999999999999999999999999999 6 888
Q ss_pred cccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHH
Q psy14484 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 253 ~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~ 332 (430)
..++++.+++.||++||||++++| +|+|++++++++++.+.. ...+++.+.+|+++|+++++++.++|+.++++++.+
T Consensus 282 ~~~a~~~~gv~pDi~t~sK~lg~G-~piG~v~~~~~i~~~l~~-~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~ 359 (465)
T 2yky_A 282 GGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLMERFDP-ARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAAS 359 (465)
Confidence 888888899999999999999998 799999999999988764 112334578999999999999999999988888999
Q ss_pred HHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEEeecCCEEEE
Q psy14484 333 RISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLRPIGNTVYL 403 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~ 403 (430)
++++++++++++|+++ .+++.+..+++.|.|+++++. ++.. .....+..+++.|+++||++.|++...
T Consensus 360 ~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~-~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~~-- 436 (465)
T 2yky_A 360 DLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFS-RAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMYA-- 436 (465)
Confidence 9999999999999887 456655678899999999887 4110 011124678999999999999876322
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++.+|+++|++++++|+++++++
T Consensus 437 -~s~~~t~edid~~l~~l~~~l~~~ 460 (465)
T 2yky_A 437 -LSLEIADAGRDAFAEALADFIGEQ 460 (465)
Confidence 788999999999999999998754
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-50 Score=392.14 Aligned_cols=380 Identities=17% Similarity=0.244 Sum_probs=306.5
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|.++.+++|+ ++||.||++||||.++++++++||+||+|++++.+++.+.. ...+..+...+++++|++.++
T Consensus 37 ~~p~~~~~~~G~---~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~l~~~la~~~~ 110 (434)
T 2epj_A 37 PYPFYVKRGEGA---YLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW---LYGAPGEAEVLLAEKILGYVK 110 (434)
T ss_dssp SSCCCEEEEEBT---EEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS---CCSSCCHHHHHHHHHHHHHHC
T ss_pred CCCeeEEeeecC---EEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHHHhCC
Confidence 348999999888 79999999999999999999999999999999999998742 125678888999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc--hhhhhc-c----CCCee
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF--KEIYTS-L----LNKTY 164 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~--~~~~~~-~----~~~~~ 164 (430)
+.++++|++||+||++.|+++++.++ ++++||+++++|||++...+...+.... ..+... . .....
T Consensus 111 -~~~~v~~~~sgseA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~ 183 (434)
T 2epj_A 111 -RGGMIRFVNSGTEATMTAIRLARGYT------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTL 183 (434)
T ss_dssp -TTCEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEE
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHHHhh------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceE
Confidence 78899999999999999999987654 6788999999999988766554332110 000000 0 01122
Q ss_pred EeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 165 IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
.+++ +|+++|+++++++++++++|++|| +++++|.++++++++++|.++|++||++||+||+
T Consensus 184 ~~~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv 245 (434)
T 2epj_A 184 VTPY-----------------NDVEALERVFAEYGDRIAGVIVEP-VIANAGVIPPRREFLAALQRLSRESGALLILDEV 245 (434)
T ss_dssp EEET-----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEET
T ss_pred ecCC-----------------CCHHHHHHHHHhCCCCEEEEEEeC-CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3332 278999999976445799999999 9999998899999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|+|| ++|..++++.+++.||+++|||++++| +|+|++++++++++.+.. .....+++||++++++++++.++|+.
T Consensus 246 ~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~---~~~~~~~~t~~~~~~~~aa~~a~l~~ 320 (434)
T 2epj_A 246 VTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTP---QGKVFNAGTFNAHPITMAAGLATLKA 320 (434)
T ss_dssp TTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred hhce-eCCcchhhHHhCCCCCeeeecchhcCC-cceeeeeecHHHHHhhcc---CCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 9999 777767777788899999999999998 799999999999887754 12234678999999999999999998
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEEe
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~~ 395 (430)
++++++.+++++++++++++|+++ ..++....+++.|.++++++. .... .......++.+.|+++||++.
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 399 (434)
T 2epj_A 321 LEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIG-VEEVSNAAQARKADKKFYVKLHEEMLRRGVFIA 399 (434)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEET-CSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-CCCcccchhccccCHHHHHHHHHHHHHCCeEEe
Confidence 877889999999999999999887 334444457888999999886 4210 001124679999999999999
Q ss_pred ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 396 PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 396 ~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++. .|+++++.++++++++++++|++++++++
T Consensus 400 ~~~~-~~~~~~~~~t~e~i~~~l~~l~~~l~~~~ 432 (434)
T 2epj_A 400 PSNL-EAVFTGLPHQGEALEIAVEGLRSSLKTVL 432 (434)
T ss_dssp SSTT-SCEECCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred ccCC-CcEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8753 24566889999999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=389.83 Aligned_cols=382 Identities=21% Similarity=0.292 Sum_probs=305.4
Q ss_pred ccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHH
Q psy14484 5 VYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 84 (430)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (430)
+.|..+...|.++.+++|+ ++||.||++||||.+++|++++||+||+|++|+.+++++... ..+.++...++++
T Consensus 26 ~~~~~~~~~p~~~~~~~g~---~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~ 99 (424)
T 2e7u_A 26 RAFKAVGGTPPFLVRGEGA---YVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLT---FGAPSPLEVALAK 99 (424)
T ss_dssp GGCTTTCSCCCCEEEEEBT---EEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHH
T ss_pred eeccccCCCCeeEEeeecC---EEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHH
Confidence 4443344568999999887 799999999999999999999999999999999999987421 2467888999999
Q ss_pred HHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc--cchhhhhc-c--
Q psy14484 85 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ--SFKEIYTS-L-- 159 (430)
Q Consensus 85 ~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~--~~~~~~~~-~-- 159 (430)
.+++.++ ++++++|++||+||++.|+++++.++ ++++||+++++|||++..++...+.. .+..+... .
T Consensus 100 ~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~ 172 (424)
T 2e7u_A 100 KVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPE 172 (424)
T ss_dssp HHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCH
T ss_pred HHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCC
Confidence 9999987 78999999999999999999977654 67889999999999877665443321 11000000 0
Q ss_pred --CCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCC
Q psy14484 160 --LNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237 (430)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi 237 (430)
......+++ +|+++|+++++++++++++|++|| +++++|.++++++++++|.++ ++||+
T Consensus 173 ~~~~~~~~~~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~~G~~~~~~~~l~~l~~l-~~~g~ 233 (424)
T 2e7u_A 173 EYAKLTLVLEY-----------------NDPEGLREVLKRRGEEIAAIIFEP-VVGNAGVLVPTEDFLKALHEA-KAYGV 233 (424)
T ss_dssp HHHTTEEEECT-----------------TCHHHHHHHHHHHGGGEEEEEECS-SBCTTSCBCCCHHHHHHHHHG-GGGTC
T ss_pred ccCCceEeCCC-----------------CCHHHHHHHHHhCCCCEEEEEEeC-CCCCCCCcCCCHHHHHHHHHH-HHcCC
Confidence 012223332 278999999975435799999999 999999899999999999999 99999
Q ss_pred EEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy14484 238 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317 (430)
Q Consensus 238 ~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 317 (430)
+||+||+|+|| ++|..++++.+++.||+++|||++++| +|+|++++++++++.+.. .....+.+||++|++++++
T Consensus 234 ~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~~~~~~~~~~~~~~---~~~~~~~~t~~~~~~~~aa 308 (424)
T 2e7u_A 234 LLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAP---LGPVYQAGTLSGNPLAMAA 308 (424)
T ss_dssp EEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTT-SSCEEEEECHHHHTTBTT---TSSBCCCCTTCSCHHHHHH
T ss_pred EEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCC-cceEEEEEcHHHHhhhcc---cCCcccCCCCCCCHHHHHH
Confidence 99999999999 777767777788999999999999988 799999999999887764 1223467899999999999
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHH
Q psy14484 318 ALATLEIFNK-DNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAA 387 (430)
Q Consensus 318 a~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l 387 (430)
+.++|+.+++ +++.+++++++++++++|+++ ..++....+++.|.++++++. .... .....+.++++.|
T Consensus 309 a~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 387 (424)
T 2e7u_A 309 GLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT-EGPVVTFQDARRTDTELFKRFFHGL 387 (424)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SSCCCSHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEe-CCCCcchhhhcccCHHHHHHHHHHH
Confidence 9999998877 788999999999999999887 445554457888999999886 4210 0111246789999
Q ss_pred HHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 388 LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 388 ~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+++||++.+++. .|+++++.++++++++++++|++++
T Consensus 388 ~~~Gv~v~~~~~-~~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 388 LDRGIYWPPSNF-EAAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp HTTTEECCSSSS-SCEECCTTCCHHHHHHHHHHHHHHC
T ss_pred HHCCeEEeccCC-CceEeeccCCHHHHHHHHHHHHHhC
Confidence 999999998752 2456688999999999999998763
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=384.33 Aligned_cols=385 Identities=25% Similarity=0.392 Sum_probs=329.7
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
++.+.+.|.++.+++|+ ++||.+|++|+||.++++++++||++|++.+++.+++.+..+.. ..+..+...++++++
T Consensus 15 ~~~~~~~~~~~~~~~g~---~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l 90 (406)
T 4adb_A 15 IPVYAPAPFIPVRGEGS---RLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKL 90 (406)
T ss_dssp CSSCCCCSSCEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHH
T ss_pred hhhcCCCCceEEeeccC---EEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHH
Confidence 34456788999999888 79999999999999999999999999999999999998754332 346678889999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.+ +.+++++++||++|++.|+++++.+.+.+|.++++.|++.+++||++.......++.+.++..+.+...+...+
T Consensus 91 a~~~--~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (406)
T 4adb_A 91 IDAT--FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHA 168 (406)
T ss_dssp HHHS--SCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEE
T ss_pred HhhC--CCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEe
Confidence 9998 55699999999999999999988765556656778999999999999888888887777777777766666666
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+.+ |+++|+++++ +++++|+++| +++++|...++.+++++|.++|++||+++|+||+|+
T Consensus 169 ~~~-----------------d~~~l~~~l~---~~~~~v~~~p-~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~ 227 (406)
T 4adb_A 169 AYN-----------------DINSASALID---DSTCAVIVEP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT 227 (406)
T ss_dssp CTT-----------------CHHHHHTTCS---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CCC-----------------cHHHHHHHhc---CCeEEEEEeC-CcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 654 7899988885 6799999999 999999888899999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||+++|..++.+..++.||+++|||++++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.++
T Consensus 228 ~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~ 300 (406)
T 4adb_A 228 GVGRTGELYAYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMTV------GTHGTTYGGNPLASAVAGKVLELIN 300 (406)
T ss_dssp TTTTTSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECHHHHHTCCT------TSSCCSSTTCHHHHHHHHHHHHHHS
T ss_pred CCCccchhHHHHhcCCCCCEEEechhhcCC-CCeEEEEEcHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 999988877777788899999999999988 799999999999887765 3467889999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEe
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLM 404 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~ 404 (430)
.+++.++++++.+++.+.|+++ ..++.+...++.|.++++.+. .+.... +.++++.|.++||.+.+++ +++|++
T Consensus 301 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~---~~~~~~~l~~~gi~v~~~~~~~iRi~ 376 (406)
T 4adb_A 301 TPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLN-ADYAGQ---AKQISQEAAKAGVMVLIAGGNVVRFA 376 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEEC-TTTTTC---HHHHHHHHHHTTEECEESSTTEEEEC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEe-CCcHHH---HHHHHHHHHHCCcEEeecCCCeEEEE
Confidence 6778899999999999999887 444556677888999999887 532111 4679999999999999875 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++.++++++++++++|++++.++.
T Consensus 377 ~~~~~~~e~i~~~~~~l~~~l~~~~ 401 (406)
T 4adb_A 377 PALNVSEEEVTTGLDRFAAACEHFV 401 (406)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-49 Score=382.14 Aligned_cols=377 Identities=26% Similarity=0.430 Sum_probs=321.7
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
+..+.+.|.++.+++|+ +++|.+|++|+||.+++++.++||++|+|.+++.+++....+... .+..+...++++++
T Consensus 12 ~~~~~~~~~~~~~~~g~---~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l 87 (392)
T 3ruy_A 12 ANNYHPLPIVISKAEGV---WVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKV 87 (392)
T ss_dssp CTTCCCCSCEECEEEBT---EEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHH
T ss_pred hccCCCCCceEEeeeeC---EEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHH
Confidence 34456788999999888 799999999999999999999999999999999999987654332 35677888999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhh-hhcCC-CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCee
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYW-YNKGF-LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTY 164 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~-~~~g~-~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
++.+ +.++++|++||++|++.|+++++... ..+|. +++++|++.+++|||.+..+..++..+.++..+.+...+..
T Consensus 88 a~~~--g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (392)
T 3ruy_A 88 AKLT--NKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGII 165 (392)
T ss_dssp HHHH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEE
T ss_pred HHhc--CCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCe
Confidence 9998 47899999999999999999887641 12222 24679999999999999888888777677766666665555
Q ss_pred EeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 165 IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
.++++ |+++|+++++ +++++|++++ ++|++|.+.++++++++|.++|++||+++|+||+
T Consensus 166 ~~~~~-----------------d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~ 224 (392)
T 3ruy_A 166 VIPYG-----------------DLEALKAAIT---PNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVADEI 224 (392)
T ss_dssp EECTT-----------------CHHHHHHHCC---TTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred eeCcc-----------------cHHHHHHHhc---cCeEEEEEeC-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 55543 7899999885 6799999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
|++|+++|..+..+..++.||+++|||+++||++|+|++++++++++.+.. ..++.+++.++++++++.++|+.
T Consensus 225 ~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~ 298 (392)
T 3ruy_A 225 QTGLGRTGKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP------GSHGSTFGGNPLACAVSIAALEV 298 (392)
T ss_dssp TTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEECHHHHTTCCT------TSSCCSSTTCHHHHHHHHHHHHH
T ss_pred hhCCCccccchhhhccCCCCCEEEEchhhhCChhhhEEEEECHHHHhhhcc------CCcCCCCCCCHHHHHHHHHHHHH
Confidence 999999988777788888999999999999986799999999998877764 34677889999999999999998
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEE
Q psy14484 325 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYL 403 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~ 403 (430)
++.+++.++++++.+++.+.|+++ ..+.+...++.|.++.+.+. . . +.++.+.|.++||.+.+++ +++|+
T Consensus 299 ~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~g~~~~~~~~-~----~---~~~l~~~l~~~gi~v~~~~~~~iRi 369 (392)
T 3ruy_A 299 LEEEKLTERSLQLGEKLVGQLKEI-DNPMITEVRGKGLFIGIELN-E----P---ARPYCEQLKAAGLLCKETHENVIRI 369 (392)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC-CCTTEEEEEEETTEEEEEES-S----C---SHHHHHHHHTTTEECCCBTTTEEEE
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHh-cCCCceEEEeeeeEEEEEEc-c----h---HHHHHHHHHHCCcEEecCCCCEEEE
Confidence 777888999999999999999877 33556677888999999876 4 1 2578999999999999875 89999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l 425 (430)
++++.++++++++++++|++++
T Consensus 370 ~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 370 APPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998876
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=383.14 Aligned_cols=377 Identities=18% Similarity=0.270 Sum_probs=287.4
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
+.|+++.+++|+ ++||.+|++||||.+++|++++||+||+|++++.+++..... ..+..+...++++++++.++
T Consensus 38 ~~p~~~~~~~G~---~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~ 111 (453)
T 2cy8_A 38 PHGLFISDAQGV---HKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP 111 (453)
T ss_dssp SCCCCEEEEEBT---EEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT
T ss_pred CCCceEEEeecC---EEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC
Confidence 458899999887 799999999999999999999999999999999999876432 25678899999999999987
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhh-cc----CCCeeEe
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYT-SL----LNKTYII 166 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~ 166 (430)
+.++|+|++||+||++.|+++++.++ ++++||+++++|||++.......+. .+..+.. .. ......+
T Consensus 112 -~~~~v~~~~gg~eA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 183 (453)
T 2cy8_A 112 -SIRKLRFTGSGTETTLLALRVARAFT------GRRMILRFEGHYHGWHDFSASGYNS-HFDGQPAPGVLPETTANTLLI 183 (453)
T ss_dssp -TCSEEEEESCHHHHHHHHHHHHHHHH------CCCEEEEECC-----------------------------CGGGEEEE
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCcCCCchhhHhhcCC-ccCCCcCCCCCccccCceeec
Confidence 78999999999999999999977554 6678999999999987765543321 0000000 00 0112223
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
++ +|+++|+++++++++++++|++|| +++++|.++++++++++|.++|++||++||+||+|+
T Consensus 184 ~~-----------------~d~~~le~~l~~~~~~~~~vi~ep-~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 245 (453)
T 2cy8_A 184 RP-----------------DDIEGMREVFANHGSDIAAFIAEP-VGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS 245 (453)
T ss_dssp CT-----------------TCHHHHHHHHHHHGGGEEEEEECS-SEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred CC-----------------CCHHHHHHHHHhcCCCEEEEEECC-CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc
Confidence 22 278999999976445799999999 988899889999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-H
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-F 325 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-~ 325 (430)
|| +.|..++++.+++.||++++||++++| +|+|++++++++++.+.. .......+.+|+++++++++++.++|+. +
T Consensus 246 g~-~~g~~~~~~~~~~~~di~s~sK~l~~G-~~~G~v~~~~~~~~~l~~-~~~~~~~~~~t~~~n~~~~aa~~aal~~~~ 322 (453)
T 2cy8_A 246 GF-RVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSR-GSDRKVLHQGTFTGNPITAAAAIAAIDTIL 322 (453)
T ss_dssp TT-TTCTTHHHHHHTCCCSEEEEEGGGGTT-SSCEEEEECHHHHTTSSS-CC---------CCCCHHHHHHHHHHHHHHH
T ss_pred cc-ccCchhhhHHhCCCCcEEEEChhhhCC-cceEEEechHHHHHHhcc-ccCCCceeCCCCCCCHHHHHHHHHHHHHHh
Confidence 99 887766777788899999999999988 799999999999887754 1112234677999999999999999997 7
Q ss_pred hhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeec-----CCc---------cchhHHHHHHHHHHHC
Q psy14484 326 NKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIE-----DPE---------QIETFSKKFFVAALKN 390 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~-----~~~---------~~~~~a~~~~~~l~~~ 390 (430)
.+++.+++++++++++++|+++ ..++....+++.|.++++++. . +.. .....+.++++.|+++
T Consensus 323 -~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 400 (453)
T 2cy8_A 323 -EDDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPG-LPPNTTDTGSITRAEVARPDVKMIAAMRMALILE 400 (453)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEET-SCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEe-ccccccccccccccccccccHHHHHHHHHHHHHC
Confidence 7789999999999999999887 445554557889999999887 4 100 0111246789999999
Q ss_pred CcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 391 ELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 391 Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||++.+.+ . +++++.++++++++++++|++++.++
T Consensus 401 Gv~v~~~~-~--~~l~~~~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 401 GVDIGGRG-S--VFLSAQHEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp TEECBTTT-E--EECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEeCCC-C--EEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 99996554 3 44578999999999999999998765
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=368.69 Aligned_cols=391 Identities=28% Similarity=0.441 Sum_probs=311.4
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|+ ++||.+|++|+||.++.++.++||.+|++.+++.+++.........+++.+...++++.|++.++.
T Consensus 23 ~~~~~~~~~g~---~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~ 99 (426)
T 1sff_A 23 HPIFADRAENC---RVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG 99 (426)
T ss_dssp EEEEEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC
T ss_pred CCceEEecccC---EEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc
Confidence 47888898887 799999999999999999889999999999999999876543222356678889999999999952
Q ss_pred CC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc-cchhhhhccCCCeeEeCCCC
Q psy14484 93 KL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 93 ~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (430)
.. ++|++++||++|++.++++++... +++.|++++++||++........+.+ .++..+.+...++..+++++
T Consensus 100 ~~~~~v~~~~g~~~a~~~~~~~a~~~~------~~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~ 173 (426)
T 1sff_A 100 DFAKKTLLVTTGSEAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 173 (426)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCB
T ss_pred ccccEEEEeCchHHHHHHHHHHHHHhh------CCCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCc
Confidence 24 799999999999999999655432 34589999999999876555544432 23334444334455666653
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+++.. ....|+++|++++++. ++++++|+++| +++++|...++++++++|.++|++||++||+||+|+||
T Consensus 174 ~~~~~-------~~~~d~~~l~~~l~~~~~~~~~~~v~~~p-~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~ 245 (426)
T 1sff_A 174 PLHGI-------SEDDAIASIHRIFKNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 245 (426)
T ss_dssp GGGTB-------CHHHHHHHHHHHHHHTCCGGGEEEEEECS-BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccccc-------chHHHHHHHHHHHHhccCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhcc
Confidence 22110 0012789999999742 24789999999 77779989999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+++|..++++..++.||+++|||++++| +|+|++++++++++.+.. ..+..|++.++++++++.++|+.++++
T Consensus 246 ~~~g~~~~~~~~~~~~di~s~sK~~~~G-lriG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~aal~~~~~~ 318 (426)
T 1sff_A 246 GRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKVFEQE 318 (426)
T ss_dssp TTTSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred CcccchhhhhhcCCCCCEEEEcccccCC-CceEEEEEcHHHHhhhcc------CCcCcCCCCCHHHHHHHHHHHHHHHhc
Confidence 9888766677778889999999999987 899999999998877653 235678889999999999999988777
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeecC---CEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPIG---NTV 401 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~~---~~l 401 (430)
++.++++++.++++++|+++ ..++.+..+++.|.++++++. .... .....+.++++.|.++||.+.++. +++
T Consensus 319 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~i 397 (426)
T 1sff_A 319 NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVL 397 (426)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEB-GGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEe-cCccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEE
Confidence 88999999999999999887 346665566778999999885 3110 011124678999999999999874 789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||++++.++++++++++++|++++.++
T Consensus 398 Ri~~~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 398 RILVPLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=361.13 Aligned_cols=379 Identities=27% Similarity=0.456 Sum_probs=308.6
Q ss_pred ccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l 86 (430)
...+...|.++.+++|+ ++||.+|++|+||.+++|++++||.+|++.+++.+++....... ..+..+...++++.+
T Consensus 16 ~~~~~~~~~~~~~~~g~---~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l 91 (397)
T 2ord_A 16 MNTYSRFPATFVYGKGS---WIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELL 91 (397)
T ss_dssp CSCCCCCSCEEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHH
T ss_pred hhcccCCCceEEeeecC---EEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHH
Confidence 34456688999999887 79999999999999999999999999999999999998754322 235668889999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.+ +.+++++++||++|++.++++++.+... +.++++.||+++++||+.........+...++..+.+...++..+
T Consensus 92 a~~~--g~~~v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~ 168 (397)
T 2ord_A 92 SKNT--FGGKVFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYF 168 (397)
T ss_dssp HHTT--TSCEEEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEE
T ss_pred HHhc--CCCeEEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEe
Confidence 9998 4689999999999999999988753211 112567899999999998775555554443444444554555555
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+.+ |+++|+++++ +++++|++++ ++|++|.+.++.+.+++|.++|++||+++|+||+|+
T Consensus 169 ~~~-----------------d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~ 227 (397)
T 2ord_A 169 EFN-----------------NVEDLRRKMS---EDVCAVFLEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC 227 (397)
T ss_dssp CTT-----------------CHHHHHHHCC---TTEEEEEECS-EECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCC-----------------CHHHHHHHhh---cCeEEEEEec-ccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 543 7899998885 5799999999 999999768899999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
|+++.|..+.++.++..||+++|||++++| +|+|+++++++++ .+.. ..+..+++.++++++++.++|+.++
T Consensus 228 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~r~G~~~~~~~~~-~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~ 299 (397)
T 2ord_A 228 GMGRTGKLFAYQKYGVVPDVLTTAKGLGGG-VPIGAVIVNERAN-VLEP------GDHGTTFGGNPLACRAGVTVIKELT 299 (397)
T ss_dssp TTTTTSSSSHHHHHTCCCSEEEECGGGGTT-SCCEEEEECSTTC-CCCT------TSSCCSSTTCHHHHHHHHHHHHHHT
T ss_pred CCccCccchhhhhhCCCCCeeeeccccCCC-cCeEEEEEchHhc-ccCC------CCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 998887655555667779999999999988 7999999998876 5542 2356788899999999999999877
Q ss_pred hcCHHHHHHHHHHHHHHHHHchh-cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEe
Q psy14484 327 KDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLM 404 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~ 404 (430)
+++..++++++.+++.+.|+++. .++.+...++.|.++++.+. .+. . +.++.+.|+++||.+.++ .+.+|++
T Consensus 300 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-~~~--~---~~~l~~~l~~~gi~v~~~~~~~iRis 373 (397)
T 2ord_A 300 KEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFR-EEV--S---NREVATKCFENKLLVVPAGNNTIRFL 373 (397)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-TTS--C---HHHHHHHHHHTTEECEEETTTEEEEC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEEC-ChH--H---HHHHHHHHHHCCCEEccCCCCEEEEE
Confidence 67788999999999999998873 45655556778899988876 421 1 367899999999999987 4799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++.++++++++++++|++++++
T Consensus 374 ~~~~~~~e~i~~~~~~l~~~l~~ 396 (397)
T 2ord_A 374 PPLTVEYGEIDLAVETLKKVLQG 396 (397)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=349.04 Aligned_cols=370 Identities=26% Similarity=0.436 Sum_probs=302.0
Q ss_pred ccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh
Q psy14484 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (430)
.+...|.++.+++|+ ++||.+|+.|+||.++.+++++||.+|++++++.+++....... ..+..+...++++.+++
T Consensus 23 ~~~~~~~~~~~~~g~---~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~ 98 (395)
T 1vef_A 23 VYNKHDLLIVRGQGA---RVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTA 98 (395)
T ss_dssp CSCCCSSCEEEEEBT---EEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHH
T ss_pred ccCCCCccEEecccC---EEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHH
Confidence 345578889999887 79999999999999998889999999999999999998754322 23567888999999999
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
.++.+++++++++||++|++.++++++.+. +++.||+++++||+.........+...++..+.++..+...++.
T Consensus 99 ~~~~~~~~v~~~~gg~~a~~~al~~~~~~~------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~ 172 (395)
T 1vef_A 99 ILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY 172 (395)
T ss_dssp TSCTTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT
T ss_pred hcCCCcCEEEEcCcHHHHHHHHHHHHHHHh------CCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC
Confidence 997777899999999999999999875332 56789999999999876555555433333333444444444443
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|+++++ +++++|+++| +++++|.+.++++++++|.++|++||+++|+||+|+|+
T Consensus 173 ~-----------------d~~~l~~~i~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~ 231 (395)
T 1vef_A 173 N-----------------DVEALKRAVD---EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGM 231 (395)
T ss_dssp T-----------------CHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred C-----------------cHHHHHHHhc---cCEEEEEEeC-ccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence 2 7899999885 4789999999 99999988899999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
++.|..+.++..++.+|+++|||.+++| +|+|++++++++++.+.. ..+..+++.++++++++.++|+.++++
T Consensus 232 ~~~g~~~~~~~~~~~~d~~s~sK~~~~g-~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~~ 304 (395)
T 1vef_A 232 GRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLERT 304 (395)
T ss_dssp TTTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCchhHhhhcCCCCCEEEEcccccCC-CceEEEEehHHHHhhhcc------CCcCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 8877655556667789999999999988 799999999998777654 125677888999999999999877666
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeecC-CEEEEeCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPP 406 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~-~~lR~~~~ 406 (430)
++.++++++.+++.+.|+++. .+.+...++.|.++++.+. .+ +..+.+.|. ++||.+.+++ +++|++++
T Consensus 305 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~ 375 (395)
T 1vef_A 305 RLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELK-EK-------AAPYIARLEKEHRVLALQAGPTVIRFLPP 375 (395)
T ss_dssp TTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEES-SC-------SHHHHHHHHHHHCEECEESSTTEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEc-Ch-------HHHHHHHHHHHCCeEEecCCCCEEEEeCC
Confidence 788999999999999998762 2444445677888888876 42 256888998 8999999874 79999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l 425 (430)
+.++++++++++++|++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 376 LVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=334.35 Aligned_cols=369 Identities=30% Similarity=0.486 Sum_probs=293.6
Q ss_pred ccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh
Q psy14484 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (430)
.+.+.|.++.+++|. +++|.+|+.|+||.++.+.+.+||.+|++.+++.+++.+..... ..++.+...++++.+++
T Consensus 6 ~~~~~~~~~~~~~g~---~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~ 81 (375)
T 2eh6_A 6 NYARLPVKFVRGKGV---YLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVK 81 (375)
T ss_dssp CCCCEEEEEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHH
T ss_pred cCcCCCccEEeeecC---EEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHh
Confidence 345578899999887 79999999999999998878999999999999999987653222 23556777899999999
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT 168 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (430)
.++. ++++++++||++|++.++++++.... ++++++++|++.+++||++........+...++..+.+...++..++.
T Consensus 82 ~~g~-~~~v~~~~g~t~a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (375)
T 2eh6_A 82 HFWT-EGKVFFANSGTESVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL 159 (375)
T ss_dssp TSSS-CEEEEEESSHHHHHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred hcCC-CCeEEEeCchHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence 9865 38999999999999999987543211 122355899999999999977666555443333233333334444443
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
+ |+++|+++++ +++++|+++| +++++|.+.++++++++|.++|++||+++|+||+|++|
T Consensus 160 ~-----------------d~~~l~~~l~---~~~~~v~~~~-~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 218 (375)
T 2eh6_A 160 N-----------------DIDSVYKLLD---EETAGIIIEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGI 218 (375)
T ss_dssp T-----------------CHHHHHTTCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred c-----------------hHHHHHHHhc---CCeEEEEEeC-ccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCC
Confidence 3 7889888875 5789999999 99999988899999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
++.+..+..+.++..+|+++|||.+++| +++|++++++++++.+.. ..+..+++.++++++++.++|+.++
T Consensus 219 ~~~~~~~~~~~~~~~~d~~s~SK~~~~g-~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~-- 289 (375)
T 2eh6_A 219 GRTGEFYAYQHFNLKPDVIALAKGLGGG-VPIGAILAREEVAQSFTP------GSHGSTFGGNPLACRAGTVVVDEVE-- 289 (375)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTT-SCCEEEEEEHHHHTTCCT------TSCCCSSTTCHHHHHHHHHHHHHHH--
T ss_pred CCCCcchhhhhcCCCCCEEEEcccccCC-CCeEEEEEcHHHHhhhcC------CCCCCCCCCCHHHHHHHHHHHHHHH--
Confidence 8877555556667779999999999988 799999999988776654 2356778889999998888888765
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPY 407 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~ 407 (430)
++.++++++.+++.+.|+++. . ...++.|.++++.+. .+ +.++++.|.++||.+.++ .+++|+++++
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~~---~-~~~~~~g~~~~~~~~-~~-------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~ 357 (375)
T 2eh6_A 290 KLLPHVREVGNYFKEKLKELG---K-GKVKGRGLMLGLELE-RE-------CKDYVLKALEKGLLINCTAGKVLRFLPPL 357 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---S-SEEEEETTEEEEECS-SC-------CHHHHHHHHHTTEECEEETTTEEEECCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHh---c-CCceEEEEEEEEEEc-Cc-------HHHHHHHHHHCCCEEecCCCCEEEEECCC
Confidence 677888889999999988762 2 245677888888776 42 256888999999999986 5899999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l 425 (430)
.++++++++++++|++++
T Consensus 358 ~~~~~~i~~~~~~l~~~l 375 (375)
T 2eh6_A 358 IIQKEHIDRAISVLREIL 375 (375)
T ss_dssp TCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999998753
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=299.08 Aligned_cols=360 Identities=14% Similarity=0.084 Sum_probs=264.1
Q ss_pred ccccCCCceeEEeecCCceeEEEECC--CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHH
Q psy14484 7 FKKKSSNNLVIRSLKNSWKWSLIDVS--GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 84 (430)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~d~~--g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (430)
++.+...+.+.++++++ ++||.+ |++||||..+ ...+ +.+|+|++++.+++....+.+. ....+..+++++
T Consensus 35 m~~y~~~~~~~~~g~g~---~~~d~~~~g~~~i~~~~~--~~~~-~~~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~l~~ 107 (421)
T 3l8a_A 35 MGRYDFTTRPDRLNQFT---YKWKTSENNPELLQMWVA--DMDF-LPVPEIKEAIINYGREHIFGYN-YFNDDLYQAVID 107 (421)
T ss_dssp ---CCCSCCCCCTTTTB---TTTGGGTTCTTCEECCSS--CCCS-CCCHHHHHHHHHHHHHCCSSCB-CCCHHHHHHHHH
T ss_pred hhhccCCcccccCCCCC---ccccccCCCCCeeecccC--CCCC-CCCHHHHHHHHHHHhcCCcCCC-CCCHHHHHHHHH
Confidence 33466677888888777 699999 8999999765 3344 4899999999999876432221 233677788999
Q ss_pred HHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC
Q psy14484 85 KLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK 162 (430)
Q Consensus 85 ~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 162 (430)
++.+.++ .++++|+|++|++||++.|+++++. ++++|++.+++||++.......+. .
T Consensus 108 ~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~--------~gd~Vi~~~~~y~~~~~~~~~~g~-------------~ 166 (421)
T 3l8a_A 108 WERKEHDYAVVKEDILFIDGVVPAISIALQAFSE--------KGDAVLINSPVYYPFARTIRLNDH-------------R 166 (421)
T ss_dssp HHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--------TEEEEEEEESCCHHHHHHHHHTTE-------------E
T ss_pred HHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcC--------CCCEEEECCCCcHHHHHHHHHCCC-------------E
Confidence 9988876 5678999999999999999998754 568899999999997654443221 1
Q ss_pred eeEeCCC--C-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEE
Q psy14484 163 TYIITTP--D-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239 (430)
Q Consensus 163 ~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~l 239 (430)
...+++. + .+.. |+++|++++++ +++++|++++ ++|++| ..++++++++|.++|++||++|
T Consensus 167 ~~~~~~~~~~~~~~~------------d~~~le~~i~~--~~~~~vil~~-p~nptG-~~~~~~~l~~l~~l~~~~~~~l 230 (421)
T 3l8a_A 167 LVENSLQIINGRFEI------------DFEQLEKDIID--NNVKIYLLCS-PHNPGG-RVWDNDDLIKIAELCKKHGVIL 230 (421)
T ss_dssp EEEEECEEETTEEEC------------CHHHHHHHHHH--TTEEEEEEES-SBTTTT-BCCCHHHHHHHHHHHHHHTCEE
T ss_pred EEeccccccCCCeee------------CHHHHHHHhhc--cCCeEEEECC-CCCCCC-CcCCHHHHHHHHHHHHHcCCEE
Confidence 2233321 1 0111 88999999974 4789999999 999999 7788888999999999999999
Q ss_pred EEeccccCCCCccccc-cc-----ccCCCCCceeeeecccC-CCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCC
Q psy14484 240 IADEIAVGCGRTGKFF-AC-----EHAEIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGN 311 (430)
Q Consensus 240 i~DEv~~g~g~~g~~~-~~-----~~~~~~~d~~~~sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~ 311 (430)
|+||+|++++++|... .+ +..+..+++.++||+++ +| +|+|+++++ +++++.+... .....+++++
T Consensus 231 i~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~-----~~~~~~~~~n 304 (421)
T 3l8a_A 231 VSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYR-----QLANNQHEVP 304 (421)
T ss_dssp EEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHH-----HHHTTCSCCC
T ss_pred EEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHH-----HHhcccCCCC
Confidence 9999999998877421 11 11244466888999998 56 799999998 8888877650 1133456789
Q ss_pred HHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE-EEEeecCCccchhHHHHHHHHHH
Q psy14484 312 PLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL 388 (430)
Q Consensus 312 ~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~a~~~~~~l~ 388 (430)
+++++++.++++..++ ++..++++++.+++.+.|+++ +.+...++.|.++. +++. ..... +.++.+.|+
T Consensus 305 ~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~i~~~~~~~~~~~~v~~~-~~~~~----~~~l~~~l~ 376 (421)
T 3l8a_A 305 TVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK---TKIKVMEPEGTYLVWLDFS-AYAIA----QPQLSEKLQ 376 (421)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEECCSBSSEEEEECG-GGTCC----TTHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC---CCceEeCCCeeEEEEEecc-ccCCC----HHHHHHHHH
Confidence 9999999988874221 344556666777777777654 55566677777776 6665 31111 246888887
Q ss_pred H-CCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 389 K-NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 389 ~-~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+ .||.+.++ .+++||+++ +++++|++++++|+++++
T Consensus 377 ~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 377 NEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp HTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred HhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 5 59999874 378999877 699999999999998875
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=276.97 Aligned_cols=346 Identities=14% Similarity=0.076 Sum_probs=256.2
Q ss_pred ceeEE-eecCCceeEEEECCCCEEEecccccccccCC-CCCHHHHHHHHHHHhhcccc-c---cCCCCCHHHHHHHHHHH
Q psy14484 14 NLVIR-SLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 14 ~~~~~-~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~-~---~~~~~~~~~~~l~~~l~ 87 (430)
+.++. +++|+ +++| ||++|+||.+| .++| +.+|++++++.+++.+.... . ...+..+...++++.++
T Consensus 47 ~~~~~~~~~g~---~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la 119 (427)
T 2w8t_A 47 AIVMEQVKSPT---EAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALR 119 (427)
T ss_dssp CCCCSEEEETT---EEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHH
T ss_pred eeeccccCCCc---eEee-CCceEEEEECc---ccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHH
Confidence 34555 77776 7999 99999999998 3689 68999999999998774321 1 11234688899999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
++++ .+++++++||++|+..+++++.. +++.|++..+ +|+.........+ .....+
T Consensus 120 ~~~g--~~~~i~~~sGs~a~~~al~~l~~--------~gd~vl~~~~-~h~~~~~~~~~~g------------~~~~~~- 175 (427)
T 2w8t_A 120 DFYG--TTGAIVFSTGYMANLGIISTLAG--------KGEYVILDAD-SHASIYDGCQQGN------------AEIVRF- 175 (427)
T ss_dssp HHHT--CSEEEEESCHHHHHHHHHHHHSC--------TTCEEEEETT-CCHHHHHHHHHSC------------SEEEEE-
T ss_pred HHhC--CCceEEecCcHHHHHHHHHHhcC--------CCCEEEECCc-ccHHHHHHHHHcC------------CeeEEe-
Confidence 9995 45888899999999999887643 4556666554 5555443333222 122233
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
|. +|+++|++++++..+ ++++|++++ +++++|.+.+ +++|.++|++||+++|+||+|+
T Consensus 176 -~~---------------~d~~~le~~l~~~~~~~~~~v~~~~-~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~ 234 (427)
T 2w8t_A 176 -RH---------------NSVEDLDKRLGRLPKEPAKLVVLEG-VYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHS 234 (427)
T ss_dssp -CT---------------TCHHHHHHHHHTSCSSSCEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred -CC---------------CCHHHHHHHHHhccCCCCeEEEEcC-CCCCCCCccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 32 288999999986533 789999999 9999998877 9999999999999999999999
Q ss_pred CC--CCcccccccccCCCCCc----eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHH
Q psy14484 247 GC--GRTGKFFACEHAEIWPD----FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALA 320 (430)
Q Consensus 247 g~--g~~g~~~~~~~~~~~~d----~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~ 320 (430)
++ +++|.. ..+.+++.+| +.+|||+++ .+.|++++++++++.+.. ..+++ ..+.+.+++.++++.+
T Consensus 235 ~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g---~~gG~v~~~~~l~~~l~~--~~~~~--~~~~~~~~~~~aa~~~ 306 (427)
T 2w8t_A 235 MGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG---TVGGFVVSNHPKFEAVRL--ACRPY--IFTASLPPSVVATATT 306 (427)
T ss_dssp TTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC---SCCEEEEECCTTGGGGGG--TCHHH--HSSCCCCHHHHHHHHH
T ss_pred ccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc---cCCCEEEeCHHHHHHHHH--hcccc--cccCCCCHHHHHHHHH
Confidence 64 222332 2344565555 668999986 356999999998887765 11122 2355678888888889
Q ss_pred HHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC
Q psy14484 321 TLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG 398 (430)
Q Consensus 321 ~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~ 398 (430)
+|+.++. ++..++++++.+++.+.|+++ ..+.. ..+ .|.++++.+. +. ..+.++++.|.++||.+.++.
T Consensus 307 al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~~-~~-----~~~~~l~~~L~~~Gi~v~~~~ 377 (427)
T 2w8t_A 307 SIRKLMTAHEKRERLWSNARALHGGLKAM-GFRLG--TETCDSAIVAVMLE-DQ-----EQAAMMWQALLDGGLYVNMAR 377 (427)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TCEES--CSSCCSSEEEEEES-SH-----HHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc--CCCCCCCEEEEEEC-CH-----HHHHHHHHHHHHCCeEEeeeC
Confidence 9988764 567888999999999999876 32221 123 6778877776 31 114679999999999998752
Q ss_pred --------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 --------NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 --------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+||+++..++++++++++++|+++++++
T Consensus 378 ~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~ 415 (427)
T 2w8t_A 378 PPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415 (427)
T ss_dssp TTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999998765
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-33 Score=269.20 Aligned_cols=347 Identities=15% Similarity=0.182 Sum_probs=256.6
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCC-CCCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~ 87 (430)
.+..+.+++|. +++| +|++|+||.++ +++| |.+|++.+++.+++.+..... ...+..+...++++.++
T Consensus 26 ~~~~~~~~~g~---~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la 98 (399)
T 3tqx_A 26 SERIITSPQNA---EIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDIS 98 (399)
T ss_dssp CCCCBCSCSSS---EEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHH
T ss_pred ccccccCCCCc---eEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHH
Confidence 34566677666 7999 99999999997 6788 689999999999988754321 11235677899999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+.++ .++.+++++|++|+..+++++.. +++.|++..++|.+. .......+ .....++
T Consensus 99 ~~~~--~~~~i~~~sGt~a~~~~l~~~~~--------~gd~v~~~~~~~~~~-~~~~~~~g------------~~~~~~~ 155 (399)
T 3tqx_A 99 EFLG--TDDTILYSSCFDANGGLFETLLG--------PEDAIISDELNHASI-IDGIRLCK------------AQRYRYK 155 (399)
T ss_dssp HHHT--CSEEEEESCHHHHHHTTHHHHCC--------TTCEEEEETTCCHHH-HHHHHSCC------------SEEEEEC
T ss_pred HHHC--CCcEEEECchHHHHHHHHHHhcC--------CCCEEEECCcccHHH-HHHHHHcC------------CceeEeC
Confidence 9995 34667777889999999887753 566777777666543 33333222 1223333
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC---CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
.. |+++|+++++++.. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+
T Consensus 156 ~~-----------------d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~ 213 (399)
T 3tqx_A 156 NN-----------------AMGDLEAKLKEADEKGARFKLIATDG-VFSMDGIIAD----LKSICDLADKYNALVMVDDS 213 (399)
T ss_dssp TT-----------------CTTHHHHHHHHHHTTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECT
T ss_pred CC-----------------CHHHHHHHHHhhhccCCCceEEEEeC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECC
Confidence 32 56788888876422 789999999 9999998877 99999999999999999999
Q ss_pred cc-CC-CCcccccccccCCC--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 245 AV-GC-GRTGKFFACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 245 ~~-g~-g~~g~~~~~~~~~~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
|+ |+ +..+. ...+..++ .+|++ ++||.++ | .+.|++++++++++.+... ...+ ..+.+.++++++++
T Consensus 214 ~~~~~~~~~~~-~~~~~~~~~~~~di~~~s~sK~~~-g-~~gG~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~ 286 (399)
T 3tqx_A 214 HAVGFIGENGR-GTPEYCGVADRVDILTGTLGKALG-G-ASGGYTSGHKEIIEWLRNR--SRPY--LFSNTVAPVIVATS 286 (399)
T ss_dssp TTTTTSSTTSC-CHHHHHTCTTCCSEEEEESSSSSC-S-SCCEEEEECHHHHHHHHHH--CHHH--HSSCCCCHHHHHHH
T ss_pred ccccccCCCCC-chHHhhCCCCCCcEEEecchHhcc-c-CceEEEEcCHHHHHHHHHh--Ccce--eccCCCcHHHHHHH
Confidence 95 44 33332 23444554 67888 8999998 4 5789999999998887651 1111 22346688888888
Q ss_pred HHHHHHH-h-hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee
Q psy14484 319 LATLEIF-N-KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 396 (430)
Q Consensus 319 ~~~l~~~-~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~ 396 (430)
.++++.+ + .++..++++++.+++.+.|+++ ..+ ..++.|.++++.+. .. ..+.++++.|.++||.+.+
T Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~gi~v~~ 356 (399)
T 3tqx_A 287 LKVLELLKTEGPQLRKQLQENSRYFRAGMEKL-GFQ---LVPGNHPIIPVMLG-DA-----QLATNMADHLLQEGIYVVG 356 (399)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-TCC---BCCCSSSEEEEEEE-CH-----HHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc-CCC---cCCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCCEEee
Confidence 8888866 3 3567788889999999999877 322 23567888888776 31 1146899999999999985
Q ss_pred c--------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 I--------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 ~--------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
. .+++|++++..++++++++++++|+++++++
T Consensus 357 ~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 357 FSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp ECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 3 1489999999999999999999999998764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=271.00 Aligned_cols=357 Identities=13% Similarity=0.059 Sum_probs=253.9
Q ss_pred eeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--C
Q psy14484 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--Y 92 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~ 92 (430)
.+.++++++ ++||.+|++||||..+ ...+ ..+|+|.+++.+++......+. ....+..+++++.+.+.++ .
T Consensus 11 ~~~~~~~g~---~~~d~~g~~~i~~~~~--~~~~-~~~~~v~~a~~~~~~~~~~~y~-~~~~~l~~~la~~l~~~~g~~~ 83 (391)
T 3dzz_A 11 HVPKRQGNS---IKWGVLKEKELPMWIA--EMDF-KIAPEIMASMEEKLKVAAFGYE-SVPAEYYKAVADWEEIEHRARP 83 (391)
T ss_dssp SCCCCCTTB---TTTTTCCTTCEECCSS--CCSS-CCCHHHHHHHHHHHTTCCCCCB-CCCHHHHHHHHHHHHHHHSCCC
T ss_pred hhccCCCCc---cceeccCCCceecccc--CCCC-CCCHHHHHHHHHHHhcCcCCCC-CCCHHHHHHHHHHHHHHhCCCC
Confidence 566677666 6999999999999877 3444 4899999999999876432221 2245677888888888875 5
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DS 171 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 171 (430)
++++|++++||++|++.+++++.. +++.|++.+++||++.......+. ....++.+ ..
T Consensus 84 ~~~~i~~~~g~~~a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~ 142 (391)
T 3dzz_A 84 KEDWCVFASGVVPAISAMVRQFTS--------PGDQILVQEPVYNMFYSVIEGNGR-------------RVISSDLIYEN 142 (391)
T ss_dssp CGGGEEEESCHHHHHHHHHHHHSC--------TTCEEEECSSCCHHHHHHHHHTTC-------------EEEECCCEEET
T ss_pred CHHHEEECCCHHHHHHHHHHHhCC--------CCCeEEECCCCcHHHHHHHHHcCC-------------EEEEeeeeecC
Confidence 678999999999999999998754 568899999999987544433222 22233331 00
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
... ..|+++|++++++ .++++|+++. ++|++|. .++.+.+++|.++|++||+++|+||+|+++.+.
T Consensus 143 ~~~----------~~d~~~l~~~l~~--~~~~~v~i~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 208 (391)
T 3dzz_A 143 SKY----------SVNWADLEEKLAT--PSVRMMVFCN-PHNPIGY-AWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT 208 (391)
T ss_dssp TEE----------ECCHHHHHHHHTS--TTEEEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS
T ss_pred Cce----------eecHHHHHHHHhc--cCceEEEEEC-CCCCCCc-ccCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 000 0188999999963 4788888888 8899995 556777999999999999999999999988777
Q ss_pred cc-ccccccCCC-CCc----eeeeecccC-CCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 252 GK-FFACEHAEI-WPD----FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 252 g~-~~~~~~~~~-~~d----~~~~sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
|. ...+..... .+| +.++||.++ +| +++|+++++ +++++.+.. ......+++.++++++++.++++
T Consensus 209 g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~l~ 282 (391)
T 3dzz_A 209 DEDITPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEE-----SFFLAGIGEPNLLAIPAAIAAYE 282 (391)
T ss_dssp SCCCCCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHH-----HHHHHTCSSCCTTHHHHHHHHHH
T ss_pred CCCceehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHH-----HHHhhccCCCCHHHHHHHHHHHh
Confidence 64 233333332 267 557899997 56 799999997 888887765 01123456778888888888886
Q ss_pred HHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE-EEEEeecCCccchhHHHHHHHHHH-HCCcEEeec--
Q psy14484 324 IFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-- 397 (430)
Q Consensus 324 ~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-- 397 (430)
..+ .+...++++++.+++.+.|++. .+.+....+.+.++ ++.+. .... . +.++.+.|+ ++||.+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~~gi~v~~g~~ 355 (391)
T 3dzz_A 283 EGHDWLRELKQVLRDNFAYAREFLAKE--VPEVKVLDSNASYLAWVDIS-ALGM-N---AEDFCKYLREKTGLIISAGNG 355 (391)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHH--CTTSEECCCCBSSEEEEECG-GGCS-C---HHHHHHHHHHHHCEECEESGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhh--CCCcEEeccCceEEEEEehh-hcCC-C---HHHHHHHHHHhCCEEEeCchh
Confidence 422 2345566677777777777652 23333334444444 45554 3111 1 367899996 889999874
Q ss_pred -----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++ ++++++++++++|+++++++
T Consensus 356 ~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 356 YRGNGHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp GCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred hCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 268999877 69999999999999998764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=271.47 Aligned_cols=346 Identities=11% Similarity=0.047 Sum_probs=244.5
Q ss_pred eecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCe
Q psy14484 19 SLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGH 96 (430)
Q Consensus 19 ~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~ 96 (430)
+++|+ ++||.+|++||||.++ .+.++ .+|+|.+++.+++......+.... .+..+.+++.+.+.++ .++++
T Consensus 11 ~~~g~---~~~d~~g~~~idl~~~--~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~ 83 (377)
T 3fdb_A 11 RARNT---MKWTRYGQGVLPLWVA--ESDFS-TCPAVLQAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEW 83 (377)
T ss_dssp HHTCC---HHHHSSCTTSEECCSS--CCCSC-CCHHHHHHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGG
T ss_pred cCCCC---ceeeccCCCeeeeccc--CCCCC-CCHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHH
Confidence 45555 7999999999999987 45555 789999999999876322222122 5667777777776554 46789
Q ss_pred EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCC
Q psy14484 97 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176 (430)
Q Consensus 97 v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
+++++||++|++.+++.+.. +++.|++..++||++.......+ .....++.+.. .
T Consensus 84 i~~t~g~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~--~-- 138 (377)
T 3fdb_A 84 IFPIPDVVRGLYIAIDHFTP--------AQSKVIVPTPAYPPFFHLLSATQ-------------REGIFIDATGG--I-- 138 (377)
T ss_dssp EEEESCHHHHHHHHHHHHSC--------TTCCEEEEESCCTHHHHHHHHHT-------------CCEEEEECTTS--C--
T ss_pred EEEeCChHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcC-------------CEEEEccCCCC--C--
Confidence 99999999999999998754 56789999999998754433322 22344444322 1
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc-c-c
Q psy14484 177 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-K-F 254 (430)
Q Consensus 177 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g-~-~ 254 (430)
|+++|++++++ +++++++.. ++|++|. .++.+.+++|.++|++||+++|+||+|+++.+.| . .
T Consensus 139 ----------d~~~l~~~l~~---~~~~v~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 203 (377)
T 3fdb_A 139 ----------NLHDVEKGFQA---GARSILLCN-PYNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTV 203 (377)
T ss_dssp ----------CHHHHHHHHHT---TCCEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC
T ss_pred ----------CHHHHHHHhcc---CCCEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCc
Confidence 88999999974 355666666 7888885 5567779999999999999999999999887766 2 1
Q ss_pred ---cccccCCCCCceeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--
Q psy14484 255 ---FACEHAEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-- 327 (430)
Q Consensus 255 ---~~~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-- 327 (430)
..+...+..+++.++||.++ +| +|+|++++ ++++++.+.. .....+++.++++++++.++|+..++
T Consensus 204 ~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~ 276 (377)
T 3fdb_A 204 AAGVSDTAASVCITITAPSKAWNIAG-LKCAQIIFSNPSDAEHWQQ------LSPVIKDGASTLGLIAAEAAYRYGTDFL 276 (377)
T ss_dssp GGGSCHHHHHHEEEEECSTTTTTCGG-GCCEEEECCSHHHHHHHHH------SCHHHHCCCCHHHHHHHHHHHHHCHHHH
T ss_pred ccHHHccCCCcEEEEEeChHhccCcc-hhheEEEeCCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhccHHHH
Confidence 11111222355668999996 46 79998776 7888877765 23445678899999888888874221
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE-EEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-------C
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------G 398 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-------~ 398 (430)
++..++++++.+++.+.|++. .+.+....+.+.++ ++.+. .... . .++.+.|+++ ||.+.++ .
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~----~~~~~~l~~~~gi~v~~g~~~~~~~~ 348 (377)
T 3fdb_A 277 NQEVAYLKNNHDFLLHEIPKR--IPGAKITPMQATYLMWIDFR-DTTI-E----GSPSEFFIEKAKVAMNDGAWFGEDGT 348 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--STTCEECCCSBCSEEEEECT-TSCC-C----SCHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCceEecCCeeEEEEEECc-ccCC-C----HHHHHHHHHhCCEEecCChhccCCCC
Confidence 345566677777777777652 23333444555555 46655 3211 1 2466777665 9999875 3
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++|++++ .+++++++++++|++++.+.
T Consensus 349 ~~~Ris~~--~~~e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 349 GFCRLNFA--TSREVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHHHHhhc
Confidence 78999877 48999999999999988753
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=264.04 Aligned_cols=349 Identities=14% Similarity=0.167 Sum_probs=254.4
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccccc-CC---CCCHHHHHHHHHH
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVML-SN---LTHKPVIKLSEKL 86 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~---~~~~~~~~l~~~l 86 (430)
..+.++.+++|. +++|.+|++|+||.++ +++|+ .+|++.+++.+++..+..... .. ...+...++++.+
T Consensus 26 ~~~~~~~~~~g~---~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 99 (401)
T 1fc4_A 26 KEERIITSAQQA---DITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKL 99 (401)
T ss_dssp CCCCCBCSCSSS---EEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHH
T ss_pred eeeeeeccCCCc---eEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHH
Confidence 346777777776 7999999999999998 46997 799999999999876432110 01 1257788999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.++.+ +.+++++|++|+..+++++.. +++.|++..++| +.........+ .....+
T Consensus 100 a~~~g~~--~~i~~~sGs~a~~~~~~~~~~--------~gd~v~~~~~~~-~~~~~~~~~~g------------~~~~~~ 156 (401)
T 1fc4_A 100 AAFLGME--DAILYSSCFDANGGLFETLLG--------AEDAIISDALNH-ASIIDGVRLCK------------AKRYRY 156 (401)
T ss_dssp HHHHTCS--EEEEESCHHHHHHTTHHHHCC--------TTCEEEEETTCC-HHHHHHHHTSC------------SEEEEE
T ss_pred HHHhCCC--cEEEeCChHHHHHHHHHHHcC--------CCCEEEEcchhH-HHHHHHHHHcC------------CceEEE
Confidence 9999644 666778889999999887743 456666666554 44333332222 122233
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC---CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHN---KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DE 243 (430)
+.. |+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||
T Consensus 157 ~~~-----------------d~~~l~~~l~~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~li~De 214 (401)
T 1fc4_A 157 ANN-----------------DMQELEARLKEAREAGARHVLIATDG-VFSMDGVIAN----LKGVCDLADKYDALVMVDD 214 (401)
T ss_dssp CTT-----------------CHHHHHHHHHHHHHTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTEEEEEEC
T ss_pred CCC-----------------CHHHHHHHHHHhhccCCCceEEEEeC-CcCCCCCCCC----HHHHHHHHHHcCCEEEEEC
Confidence 321 67888888875322 688999999 9999998877 9999999999999999999
Q ss_pred ccc-CCC-CcccccccccCCCC--Ccee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHH
Q psy14484 244 IAV-GCG-RTGKFFACEHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCA 317 (430)
Q Consensus 244 v~~-g~g-~~g~~~~~~~~~~~--~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a 317 (430)
+|+ |+. ++|..+ .+..++. .|++ ++||.++++. .|++++++++++.+... ..+ +..+++.+++++++
T Consensus 215 ~~~~g~~~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~~--gG~~~~~~~~~~~l~~~--~~~--~~~~~~~~~~~~~a 287 (401)
T 1fc4_A 215 SHAVGFVGENGRGS-HEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQR--SRP--YLFSNSLAPAIVAA 287 (401)
T ss_dssp TTTTTTSSTTSCCH-HHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHH--CHH--HHHSCCCCHHHHHH
T ss_pred cccccccCCCCCcc-HHHcCCCcCCcEEEecchhhccCCC--CEEEEcCHHHHHHHHHh--CcC--ceeCCCCCHHHHHH
Confidence 995 773 345432 2223333 4776 7899997652 59999999998877651 001 22356778999999
Q ss_pred HHHHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee
Q psy14484 318 ALATLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP 396 (430)
Q Consensus 318 a~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~ 396 (430)
+.++|+.++. ++..++++++.+++.+.|+++ ..+. .++.|.++++.+. .. ..+.++.+.|.++||.+.+
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~-~~-----~~~~~l~~~l~~~gi~v~~ 357 (401)
T 1fc4_A 288 SIKVLEMVEAGSELRDRLWANARQFREQMSAA-GFTL---AGADHAIIPVMLG-DA-----VVAQKFARELQKEGIYVTG 357 (401)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCB---CCSSSSEEEEEEE-CH-----HHHHHHHHHHHHTTEECCE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CCcc---cCCCCCEEEEEcC-Ch-----HHHHHHHHHHHHCCcEEee
Confidence 9999987653 567788889999999999876 3332 2467888888776 31 1146789999999999987
Q ss_pred cC--------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 IG--------NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 ~~--------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+. +++|++++..++++++++++++|++++.++
T Consensus 358 ~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 358 FFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 52 479999999999999999999999998764
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-31 Score=257.28 Aligned_cols=347 Identities=15% Similarity=0.127 Sum_probs=253.5
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHH
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKL 86 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l 86 (430)
..+.++.+++|. +++ .+|++++||.++. ++|+ .+|++.+++.+++....... ...+..+..+++++.+
T Consensus 25 ~~~~~~~~~~g~---~~~-~~g~~~idl~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l 97 (398)
T 3a2b_A 25 AYFRPIQSKQDT---EVK-IDGRRVLMFGSNS---YLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKL 97 (398)
T ss_dssp CSSCCBCSCSSS---EEE-ETTEEEEECSCSC---TTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHH
T ss_pred cceeeecCCCCc---eEE-ECCceEEEeeccc---ccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHH
Confidence 467788888877 788 8999999999873 3788 79999999999887643211 1233467889999999
Q ss_pred HhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 87 ~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.++ .+++++++||++|++.+++++.. +++.|++.+++|..+... ....+ .....+
T Consensus 98 a~~~g--~~~v~~~~ggt~a~~~~~~~~~~--------~gd~V~~~~p~~~~~~~~-~~~~g------------~~~~~v 154 (398)
T 3a2b_A 98 SAYVG--KEAAILFSTGFQSNLGPLSCLMG--------RNDYILLDERDHASIIDG-SRLSF------------SKVIKY 154 (398)
T ss_dssp HHHHT--CSEEEEESSHHHHHHHHHHHSSC--------TTCEEEEETTCCHHHHHH-HHHSS------------SEEEEE
T ss_pred HHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEECCccCHHHHHH-HHHcC------------CceEEe
Confidence 99984 47999999999999999998753 567788887777654322 22222 122333
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC-CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHN-KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
+.. |+++|++++++..+ ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|
T Consensus 155 ~~~-----------------d~~~l~~~l~~~~~~~~~~v~~~~-~~nptG~~~~----~~~l~~~~~~~~~~li~De~~ 212 (398)
T 3a2b_A 155 GHN-----------------NMEDLRAKLSRLPEDSAKLICTDG-IFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212 (398)
T ss_dssp CTT-----------------CHHHHHHHHHTSCSSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTT
T ss_pred CCC-----------------CHHHHHHHHHhhccCCceEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCC
Confidence 332 78999999986432 688999999 9999998877 999999999999999999999
Q ss_pred cCC--CCcccccccccCCCC--Ccee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHH
Q psy14484 246 VGC--GRTGKFFACEHAEIW--PDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAAL 319 (430)
Q Consensus 246 ~g~--g~~g~~~~~~~~~~~--~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~ 319 (430)
+.+ ++.+..+ .+.++.. +|++ ++||.++.. .|++++++++++.+... . ..+..+...++..++++.
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~~---GG~~~~~~~~~~~l~~~--~--~~~~~~~~~~~~~~a~~~ 284 (398)
T 3a2b_A 213 SLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLASL---GGFVAGDADVIDFLKHN--A--RSVMFSASMTPASVASTL 284 (398)
T ss_dssp TTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCSS---CEEEEECHHHHHHHHHH--C--HHHHSSBCCCHHHHHHHH
T ss_pred cccccCCCCCch-HhhcCCCcCCeEEEecccccccCC---CcEEEeCHHHHHHHHHh--c--ccceecCCCCHHHHHHHH
Confidence 743 2333222 2333432 5777 889998742 18899999988877540 0 013344455666666667
Q ss_pred HHHHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-
Q psy14484 320 ATLEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI- 397 (430)
Q Consensus 320 ~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~- 397 (430)
++|+.++. ++..++++++.+++.+.|+++ ..+. .++.|.++++.+. .+ ..+.++.+.|.++||.+.++
T Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~g~~~~~~~~-~~-----~~~~~l~~~l~~~gi~v~~~~ 354 (398)
T 3a2b_A 285 KALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GFDL---GATESPILPIFIR-SN-----EKTFWVTKMLQDDGVFVNPVV 354 (398)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TCCB---CSCCSSEEEEECC-CH-----HHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CCCc---CCCCCCEEEEEcC-CH-----HHHHHHHHHHHHCCcEEEeeC
Confidence 77776543 467788888999999999876 3322 2345788777765 31 11467999999999999885
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++..++++++++++++|++++.++
T Consensus 355 ~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 355 SPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 2689999998899999999999999998753
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=260.80 Aligned_cols=355 Identities=13% Similarity=0.101 Sum_probs=232.3
Q ss_pred eeEEeecCCceeEEEECCCC-----EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCH-HHHHHHHHHHh
Q psy14484 15 LVIRSLKNSWKWSLIDVSGK-----RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHK-PVIKLSEKLSS 88 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~-----~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ 88 (430)
.+-++++++ ++||.+|+ +++||..+ ...+| .+|+|.+++.+++......+... ..+ +.+++++.+.+
T Consensus 7 ~~~~~~~~~---~~~d~~~~~~~~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~~~y~~~-~~~~lr~~la~~l~~ 79 (390)
T 1d2f_A 7 VVDRHGTWC---TQWDYVADRFGTADLLPFTIS--DMDFA-TAPCIIEALNQRLMHGVFGYSRW-KNDEFLAAIAHWFST 79 (390)
T ss_dssp --------------------------CEECCSS--SCSSC-CCHHHHHHHHHHHTTCCCCCCCS-CCHHHHHHHHHHHHH
T ss_pred cccccCCCc---cchhhhccccCCCCeeEeeec--CCCCC-CCHHHHHHHHHHHhCCCCCCCCC-ChHHHHHHHHHHHHH
Confidence 345566565 79999997 78999776 44577 78999999999886532111112 445 67777777776
Q ss_pred hcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 89 LTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 89 ~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
.++ .++++|++++|+++|++.++++++. ++++|++.+++||++.......+. ....+
T Consensus 80 ~~g~~~~~~~v~~t~g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v 138 (390)
T 1d2f_A 80 QHYTAIDSQTVVYGPSVIYMVSELIRQWSE--------TGEGVVIHTPAYDAFYKAIEGNQR-------------TVMPV 138 (390)
T ss_dssp HSCCCCCGGGEEEESCHHHHHHHHHHHSSC--------TTCEEEEEESCCHHHHHHHHHTTC-------------EEEEE
T ss_pred hcCCCCCHHHEEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHHHHHHHHHCCC-------------EEEEe
Confidence 655 5678999999999999999998753 568899999999987654433221 12233
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+.+.... .+ ..|+++|++++++ .++++|++.. ++|++|.+ ++.+++++|.++|++||+++|+||+|+
T Consensus 139 ~~~~~~~-~~--------~~d~~~l~~~l~~--~~~~~v~l~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~ 205 (390)
T 1d2f_A 139 ALEKQAD-GW--------FCDMGKLEAVLAK--PECKIMLLCS-PQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHM 205 (390)
T ss_dssp ECEECSS-SE--------ECCHHHHHHHHTS--TTEEEEEEES-SCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ecccCCC-cc--------ccCHHHHHHHhcc--CCCeEEEEeC-CCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence 3321100 00 0178999999963 3678887777 88888855 567889999999999999999999999
Q ss_pred CCCCccccc-ccccCCCCC---c-eeeeecccC-CCccccEEEEEc-HHHHHhhhccCCcccccc-cCCC-CCCHHHHHH
Q psy14484 247 GCGRTGKFF-ACEHAEIWP---D-FLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLH-SHSY-SGNPLACCA 317 (430)
Q Consensus 247 g~g~~g~~~-~~~~~~~~~---d-~~~~sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~-~~t~-~~~~~~~~a 317 (430)
++.+.|..+ .+. .+.+ | +.++||.++ +| +|+|+++++ +++.+.+.. ... ..++ +.+++++.+
T Consensus 206 ~~~~~g~~~~~~~--~~~~~~~d~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a 276 (390)
T 1d2f_A 206 DMVWGEQPHIPWS--NVARGDWALLTSGSKSFNIPA-LTGAYGIIENSSSRDAYLS------ALKGRDGLSSPSVLALTA 276 (390)
T ss_dssp TCBCSSSCCCCGG--GTCCSSEEEEECSHHHHTCGG-GCCEEEEECSHHHHHHHHH------HHHTTSCCCSCCHHHHHH
T ss_pred ccccCCCCCcCHH--HcchhhHhhccCccHhhcccC-hhheEEEECCHHHHHHHHH------HHhhhcccCCCCHHHHHH
Confidence 887665422 121 1222 3 789999997 57 799999985 788777664 223 3455 678888888
Q ss_pred HHHHHHHHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE-EEEEeecCCccchhHHHHHHHHHH-HCCcE
Q psy14484 318 ALATLEIFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNELL 393 (430)
Q Consensus 318 a~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~ 393 (430)
+.++++..+ -+...++++++.+++.+.|++. .|.+...++.|.++ ++.+. .... . +.++.+.|. ++||.
T Consensus 277 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~l~~~l~~~~gi~ 349 (390)
T 1d2f_A 277 HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA--FPELNWQIPQSTYLAWLDLR-PLNI-D---DNALQKALIEQEKVA 349 (390)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCCCCSBCSEEEEECG-GGCC-C---HHHHHHHHHHTTCEE
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCEEecCCccEEEEEEcc-ccCC-C---HHHHHHHHHHHcCEE
Confidence 888886421 1234455666667777777651 23333344555444 56665 3101 1 357889998 67999
Q ss_pred Eeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 394 LRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 394 ~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.++ .+++|++++. +++++++++++|++++.+.
T Consensus 350 v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 350 IMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred eeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHHHHHhh
Confidence 9874 3689998875 5899999999999998764
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=263.58 Aligned_cols=335 Identities=14% Similarity=0.119 Sum_probs=243.9
Q ss_pred ceeEEEECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHHhhcCCCCCeEE
Q psy14484 24 WKWSLIDVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCF 98 (430)
Q Consensus 24 ~~~~~~d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~ 98 (430)
.+.++.+.+|++|+||+++ .++|+ .+|++.+++.+++.+.... .......+...++++++++.++ .+..+
T Consensus 49 ~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g--~~~~i 123 (409)
T 3kki_A 49 KHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG--FDECL 123 (409)
T ss_dssp SCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT--CSEEE
T ss_pred CeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC--CCeEE
Confidence 3456888899999999886 55776 5899999999999874321 1112333556788888999884 45677
Q ss_pred EcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCC
Q psy14484 99 YGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 178 (430)
Q Consensus 99 ~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
++++|++|+..+++++.. +++.|++..++| +.........+ .....++.+
T Consensus 124 ~~~sGt~a~~~~l~~~~~--------~gd~Vl~~~~~~-~~~~~~~~~~g------------~~~~~~~~~--------- 173 (409)
T 3kki_A 124 LSQSGWNANVGLLQTICQ--------PNTNVYIDFFAH-MSLWEGARYAN------------AQAHPFMHN--------- 173 (409)
T ss_dssp EESCHHHHHHHHHHHHCC--------TTCEEEEETTSC-HHHHHHHHHTT------------CEEEEECTT---------
T ss_pred EecchHHHHHHHHHHhcC--------CCCEEEECCCcC-HHHHHHHHHcC------------CeEEEecCC---------
Confidence 889999999999997754 566777666555 44333333222 111222222
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--CCCcccccc
Q psy14484 179 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--CGRTGKFFA 256 (430)
Q Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g--~g~~g~~~~ 256 (430)
|+++|++++++. ++++|++++ +++++|.+.+ +++|.++|++||++||+||+|++ ++++|..+.
T Consensus 174 --------d~~~le~~l~~~--~~~~vi~~~-~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~ 238 (409)
T 3kki_A 174 --------NCDHLRMLIQRH--GPGIIVVDS-IYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL 238 (409)
T ss_dssp --------CHHHHHHHHHHH--CSCEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH
T ss_pred --------CHHHHHHHHHhc--CCeEEEECC-CCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch
Confidence 789999999853 358999999 9999998877 99999999999999999999997 666665433
Q ss_pred cccCCC--CCce--eeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHH
Q psy14484 257 CEHAEI--WPDF--LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNIL 331 (430)
Q Consensus 257 ~~~~~~--~~d~--~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~ 331 (430)
...++ .+|+ .++||+++++ .|++++++++++.+.. ......+ +...++++++++.++++.++. ++..
T Consensus 239 -~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~aa~~aal~~~~~~~~~~ 310 (409)
T 3kki_A 239 -AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPF--ISYPAIF--SSTLLPYEAAGLETTLEIIESADNRR 310 (409)
T ss_dssp -HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHH--HCHHHHH--SBCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred -hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHH--hCcCccc--cCCCcHHHHHHHHHHHHHHhcCHHHH
Confidence 33344 4666 5789999875 4899999988776654 1111112 223578888888888987754 4677
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEE
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYL 403 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~ 403 (430)
++++++.+++.+.|+++ ... +.+.+.++++.+. .. ..+.++++.|+++||.+.+. .+++||
T Consensus 311 ~~~~~~~~~l~~~L~~~-g~~----~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi 379 (409)
T 3kki_A 311 QHLDRMARKLRIGLSQL-GLT----IRSESQIIGLETG-DE-----RNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRL 379 (409)
T ss_dssp HHHHHHHHHHHHHHHTT-TCC----CCCSSSEEEEEEE-SH-----HHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHc-CCc----cCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEE
Confidence 78889999999999876 222 2256788888776 31 11457899999999998652 268999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++..+++++|++++++|++++..
T Consensus 380 ~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 380 SLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EccCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=256.79 Aligned_cols=333 Identities=13% Similarity=0.061 Sum_probs=245.6
Q ss_pred eEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 26 WSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 26 ~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
.++++.+|++++||.+| .++++ .+|++++++.+++... ..++.....++++.+++.++.+++++++++||++
T Consensus 8 ~~~~~~~~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~-----~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 8 AAFTAPSTDNPIRINFN--ENPLG-MSPKAQAAARDAVVKA-----NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp -CCCCCCSSSCEECSSC--CCSSC-CCHHHHHHHHHTGGGT-----TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred ccccCCCCCceEEccCC--CCCCC-CCHHHHHHHHHHHhhC-----cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 35788899999999988 46666 7899999999887642 2455667789999999999877889999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.+++.+.. +++.|++.+++|+++.......+ .+...++.+..+..
T Consensus 80 a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~----------- 127 (354)
T 3ly1_A 80 GIRAAIEAYAS--------LEAQLVIPELTYGDGEHFAKIAG-------------MKVTKVKMLDNWAF----------- 127 (354)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSSCTHHHHHHHHTT-------------CEEEEECCCTTSCC-----------
T ss_pred HHHHHHHHHhC--------CCCeEEECCCCchHHHHHHHHcC-------------CEEEEecCCCCCCC-----------
Confidence 99999998754 56789999999998754433322 22344544433322
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cc---ccC-
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC---EHA- 260 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~---~~~- 260 (430)
|+++|+++++++ +++++|+++. ++|++|.. .+.+.+++|.++| ++|+++|+||+|+++.+.+... .. ...
T Consensus 128 -d~~~l~~~l~~~-~~~~~v~l~~-p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 128 -DIEGLKAAVAAY-SGPSIVYLVN-PNNPTGTI-TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp -CHHHHHHHHHTC-SSCEEEEEES-SCTTTCCC-CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred -CHHHHHHHhccC-CCCCEEEEeC-CCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 889999999742 4678888888 88888855 4566677777777 7999999999999886655321 11 112
Q ss_pred CCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHH
Q psy14484 261 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDM 338 (430)
Q Consensus 261 ~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~ 338 (430)
+....+.++||.++ .| +++|++++++++.+.+.. ....++.+++++.++.++|+..+ -+...++++++.
T Consensus 203 ~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 273 (354)
T 3ly1_A 203 ENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGR--------YVAGEKINFSGVDAALASMNDSAFITYSKKSNDVSR 273 (354)
T ss_dssp SSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGG--------GTTCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeChhhccChh-hhheeeecCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33344557899997 56 799999999999888876 22336788998888888876322 134556667777
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----ecCCEEEEeCCCCCCHHHH
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PIGNTVYLMPPYILNKNEI 414 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~~~~lR~~~~~~~t~e~i 414 (430)
+++.+.|+++ .. ...++.|.++++.+. . . ..++.+.|.++||.+. ...+++|++++ +++++
T Consensus 274 ~~l~~~l~~~-~~---~~~~~~~~~~~~~~~-~----~---~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i 338 (354)
T 3ly1_A 274 QILLKALEDL-KL---PYLPSEGNFVFHQLV-V----P---LKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEM 338 (354)
T ss_dssp HHHHHHHHHH-TC---CBCCCCSSEEEEECS-S----C---HHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHH
T ss_pred HHHHHHHHHC-CC---eECCCCceEEEEECC-C----C---HHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHH
Confidence 7777777765 22 233567888777766 3 1 3678999999999987 12478999865 89999
Q ss_pred HHHHHHHHHHHHH
Q psy14484 415 QHMTSAIFQTFNE 427 (430)
Q Consensus 415 ~~~~~~l~~~l~~ 427 (430)
++++++|++++++
T Consensus 339 ~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 339 QWVADTMREFRKK 351 (354)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=263.37 Aligned_cols=354 Identities=16% Similarity=0.095 Sum_probs=247.8
Q ss_pred CceeEEeecCCceeEEEECCCCE-----EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKR-----YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~-----~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (430)
...+.++++++ ++||.+|++ ++||..+ . +....+|+|.+++.+++....+.+ ..+..+..+++++.++
T Consensus 9 ~~~~~~~~~g~---~~~d~~~~~~~~~~~i~l~~~--~-~~~~~~~~v~~a~~~~~~~~~~~y-~~~~~~~~~~l~~~l~ 81 (391)
T 4dq6_A 9 NEIVDRSNNFS---SKWSEMEKKYGTNDLLPMWVA--D-MDFKAAPCIIDSLKNRLEQEIYGY-TTRPDSYNESIVNWLY 81 (391)
T ss_dssp TSCCCCTTTTB---HHHHCHHHHHSCSCSEECCSS--S-CSSCCCHHHHHHHHHHHTTCCCCC-BCCCHHHHHHHHHHHH
T ss_pred ccccccccCCc---eeeeecccccCCCCceecccc--C-CCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHH
Confidence 45556666665 699988644 5999876 2 333478999999999987643222 2345678889999999
Q ss_pred hhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 88 SLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 88 ~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
+.++ .+++++++++||++|++.+++++.. +++.|++.+++|+++.......+. ....
T Consensus 82 ~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~ 140 (391)
T 4dq6_A 82 RRHNWKIKSEWLIYSPGVIPAISLLINELTK--------ANDKIMIQEPVYSPFNSVVKNNNR-------------ELII 140 (391)
T ss_dssp HHHCCCCCGGGEEEESCHHHHHHHHHHHHSC--------TTCEEEECSSCCTHHHHHHHHTTC-------------EEEE
T ss_pred HHhCCCCcHHHeEEcCChHHHHHHHHHHhCC--------CCCEEEEcCCCCHHHHHHHHHcCC-------------eEEe
Confidence 9886 5678999999999999999998854 567899999999987554433222 2233
Q ss_pred eCCC--CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEec
Q psy14484 166 ITTP--DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243 (430)
Q Consensus 166 ~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DE 243 (430)
++.+ ...... .|+++|+++++ + +++++++. ++|++|. .++.+.+++|.++|++||+++|+||
T Consensus 141 ~~~~~~~~~~~~----------~d~~~l~~~l~---~-~~~v~i~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De 204 (391)
T 4dq6_A 141 SPLQKLENGNYI----------MDYEDIENKIK---D-VKLFILCN-PHNPVGR-VWTKDELKKLGDICLKHNVKIISDE 204 (391)
T ss_dssp CCCEECTTSCEE----------CCHHHHHHHCT---T-EEEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eeeeecCCCceE----------eeHHHHHHHhh---c-CCEEEEEC-CCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeec
Confidence 3332 111000 17899999986 3 78888888 8888885 5667779999999999999999999
Q ss_pred cccCCCCcccc-cccccC-----CCCCceeeeecccC-CCccccEEEEEcH-HHHHhhhccCCcccccccCCCCCCHHHH
Q psy14484 244 IAVGCGRTGKF-FACEHA-----EIWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLAC 315 (430)
Q Consensus 244 v~~g~g~~g~~-~~~~~~-----~~~~d~~~~sK~l~-gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 315 (430)
+|+++.+.|.. ..+... +....+.++||.++ +| +|+|++++++ ++.+.+.. ...+..+++.+++++
T Consensus 205 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 278 (391)
T 4dq6_A 205 IHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDD-----AFTRIDIKRNNCFSL 278 (391)
T ss_dssp TTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHH-----HHHHTTCCCCCHHHH
T ss_pred cccccccCCCCccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHH-----HHHhhcCCCCCHHHH
Confidence 99988776642 122211 11133557899997 56 7999999885 78777664 012334567888988
Q ss_pred HHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE-EEEeecCCccchhHHHHHHHHHHHC-C
Q psy14484 316 CAALATLEIFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAALKN-E 391 (430)
Q Consensus 316 ~aa~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~a~~~~~~l~~~-G 391 (430)
+++.++++..+ .+...++++++.+++.+.|++. .+.+....+.+.++. +.+. .... . +..+.+.|.++ |
T Consensus 279 ~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~~g 351 (391)
T 4dq6_A 279 VATEASYNNGESWLESFLEYLESNIDFAIKYINEN--MPKLKVRKPEGTYLLWVDFS-ALGL-S---DEELESILVQKGK 351 (391)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--CTTSEECCCSBSSEEEEECG-GGCC-C---HHHHHHHHHHTTC
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCEecCCCccEEEEEEhh-hcCC-C---HHHHHHHHHHhCC
Confidence 88888887422 1334455666666666666542 244444455566555 5555 3111 1 36799999998 9
Q ss_pred cEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 392 LLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 392 v~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
|.+.++ .+++|++++ ++++++++++++|++++
T Consensus 352 i~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 352 VALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 999874 278999877 69999999999998876
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=260.65 Aligned_cols=347 Identities=12% Similarity=0.042 Sum_probs=237.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc----cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASA 106 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA 106 (430)
..++||.++. ..+| .+|++.+++.+++... ..+....+..++.+.+++.+.+.++ .+++ +|++++||++|
T Consensus 37 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a 113 (429)
T 1yiz_A 37 YKPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEA 113 (429)
T ss_dssp HCCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CCEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHH
Confidence 4689998884 4577 6899999999998752 1111112234566777777766555 4677 99999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH-H
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA-R 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 185 (430)
++.++++++. +++.|++..++||++.......+. ....++.+..... ....... .
T Consensus 114 ~~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~---~~~~~~~~~ 169 (429)
T 1yiz_A 114 LYATIQGHVD--------EGDEVIIIEPFFDCYEPMVKAAGG-------------IPRFIPLKPNKTG---GTISSADWV 169 (429)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCSS---SSEEGGGCB
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEeCCccccc---ccccccCcc
Confidence 9999998753 567899999999997554332211 1223333221000 0000000 0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccc----cC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACE----HA 260 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~----~~ 260 (430)
.|+++|+++++ +++++|++++ ++|++|.+ ++++++++|.++|++||+++|+||+|+++.+.|.. ..+. ..
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 244 (429)
T 1yiz_A 170 LDNNELEALFN---EKTKMIIINT-PHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMW 244 (429)
T ss_dssp CCHHHHHHHCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTG
T ss_pred cCHHHHHHHhc---cCceEEEECC-CCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCc
Confidence 27899998884 5788888888 99999955 57889999999999999999999999988765532 1121 22
Q ss_pred CCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-----HhhcCHH---
Q psy14484 261 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-----FNKDNIL--- 331 (430)
Q Consensus 261 ~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-----~~~~~~~--- 331 (430)
+..+++.++||.++ +| +|+|++++++++++.+.. ..+..+++.++++++++.++|+. ...+++.
T Consensus 245 ~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 317 (429)
T 1yiz_A 245 ERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSI 317 (429)
T ss_dssp GGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHH
T ss_pred CceEEEecchhccCCCC-cceEEEEeCHHHHHHHHH------HHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHH
Confidence 33455678999998 56 799999999999887765 33456788899999888888876 3224444
Q ss_pred -HHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCcc-------chhHHHHHHHHHH-HCCcEEeec----
Q psy14484 332 -QRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQ-------IETFSKKFFVAAL-KNELLLRPI---- 397 (430)
Q Consensus 332 -~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~-------~~~~a~~~~~~l~-~~Gv~~~~~---- 397 (430)
++++++.+++.+.|+++ +. ....+ .|.++++.+. ..... ......++++.|. ++||.+.++
T Consensus 318 ~~~~~~~~~~l~~~L~~~---g~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~ 392 (429)
T 1yiz_A 318 SGELMAKRDYMASFLAEV---GM-NPTVPQGGYFMVADWS-SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFY 392 (429)
T ss_dssp HHHHHHHHHHHHHHHHHH---TC-EEEECSBSSEEEEECC-SSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHhC---CC-cccCCCcceEEEEEcc-cccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhC
Confidence 44455666666666554 22 22223 4667777776 42100 0001357888886 789999864
Q ss_pred --------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 --------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 --------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+++||+++ .++++|++++++|+++++
T Consensus 393 ~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 393 SEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp CGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred CCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 468999887 499999999999988764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=253.37 Aligned_cols=327 Identities=11% Similarity=0.087 Sum_probs=240.4
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC-CCCeEEEcCCchHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgteA~~~al 111 (430)
++.++||.++ .++++ .+|+|++++.+++..... ..++.....++++.+++.++. ..+++++++||++|++.++
T Consensus 29 ~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 102 (367)
T 3euc_A 29 SHGLVKLDAM--ENPYR-LPPALRSELAARLGEVAL---NRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLA 102 (367)
T ss_dssp CTTCEECCSS--CCCCC-CCHHHHHHHHHHHHHHHT---TCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHH
T ss_pred CCCeeEccCC--CCCCC-CCHHHHHHHHHHhhhhhh---hcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHH
Confidence 4678999988 35565 689999999998875321 133344567888999999876 6689999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+.+.. +++.|++.+++|+++.......+ .....++.+.++.. |+++|
T Consensus 103 ~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l 149 (367)
T 3euc_A 103 LAAAR--------PGAKVMAPVPGFVMYAMSAQFAG-------------LEFVGVPLRADFTL------------DRGAM 149 (367)
T ss_dssp HHTCC--------TTCEEEEEESCSCCSCHHHHTTT-------------CEEEEEECCTTSCC------------CHHHH
T ss_pred HHHcC--------CCCEEEEcCCCHHHHHHHHHHcC-------------CeEEEecCCCCCCC------------CHHHH
Confidence 98753 56789999999998755433322 22344444432222 88999
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCCCCcccccccccCCCCCceeee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~ 269 (430)
+++++++ ++++|+++. ++|++|.+ .+.+.+++|.++|++| |+++|+||+|++|...+........+...++.++
T Consensus 150 ~~~l~~~--~~~~v~~~~-~~nptG~~-~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~ 225 (367)
T 3euc_A 150 LAAMAEH--QPAIVYLAY-PNNPTGNL-FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTV 225 (367)
T ss_dssp HHHHHHH--CCSEEEEES-SCTTTCCC-CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEEC
T ss_pred HHHhhcc--CCCEEEEcC-CCCCCCCC-CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecc
Confidence 9999742 567777777 88989954 5677799999999999 9999999999988644333333334444566789
Q ss_pred ecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHch
Q psy14484 270 SKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 270 sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l~~l 348 (430)
||...+| +++|++++++++++.+.. ...+++.+++++.++.++|+..+. +...++++++.+++.+.|+++
T Consensus 226 sK~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 296 (367)
T 3euc_A 226 SKLGLAG-IRLGYVAGDPQWLEQLDK--------VRPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAAH 296 (367)
T ss_dssp CCTTSCS-CCEEEEEECHHHHHHHGG--------GCCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhcccc-cCceeeeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9993346 799999999999888876 334677899999988888864211 344556666777777777654
Q ss_pred hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+++...++.|.++++.+. + ..++.+.|.++||.+.++ .+++|++++ +++++++++++|
T Consensus 297 ---~g~~~~~~~~~~~~~~~~-~--------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~---~~~~i~~~~~~l 361 (367)
T 3euc_A 297 ---GGVTVFPSAANFLLARVP-D--------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS---TPEENAQFLEAF 361 (367)
T ss_dssp ---TTCEECCCSSSEEEEECS-C--------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC---CHHHHHHHHHHH
T ss_pred ---CCcEECCCCCeEEEEECC-C--------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC---CHHHHHHHHHHH
Confidence 444444667777776553 2 367888999999999874 368999866 999999999999
Q ss_pred HHHHH
Q psy14484 422 FQTFN 426 (430)
Q Consensus 422 ~~~l~ 426 (430)
++++.
T Consensus 362 ~~~l~ 366 (367)
T 3euc_A 362 AASLQ 366 (367)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 88763
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=252.60 Aligned_cols=339 Identities=14% Similarity=0.140 Sum_probs=230.7
Q ss_pred CceeEEeecCCceeEEEE-CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC
Q psy14484 13 NNLVIRSLKNSWKWSLID-VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ 91 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d-~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 91 (430)
.+.++.++.+. +.++ .+|+++|||.++ .++++ .+|++.+++.+++.... .++.+...++++.+++.++
T Consensus 7 ~~~~~~~g~~~---~~~~~~~~~~~idl~~~--~~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~ 75 (361)
T 3ftb_A 7 GGDLMIHGGDI---YTEGVFKGRELLDYSSN--INPLG-IPKSFLNNIDEGIKNLG-----VYPDVNYRRLNKSIENYLK 75 (361)
T ss_dssp ------------------------CEETTCC--CCTTC-SCHHHHTTHHHHHHGGG-----SCCCTTCHHHHHHHHHHHT
T ss_pred CCccccCCCCH---HHHhhcCCCCEEEecCC--CCCCC-CCHHHHHHHHHHHHHhc-----CCCCccHHHHHHHHHHHhC
Confidence 34566666554 2333 489999999998 45666 58999999999887643 2334445788888888888
Q ss_pred CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC
Q psy14484 92 YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS 171 (430)
Q Consensus 92 ~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (430)
.+++++++++||++|++.+++++ ++|++.+++|+++.......+ .....++.+..
T Consensus 76 ~~~~~i~~~~g~t~al~~~~~~~------------d~vi~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~ 130 (361)
T 3ftb_A 76 LKDIGIVLGNGASEIIELSISLF------------EKILIIVPSYAEYEINAKKHG-------------VSVVFSYLDEN 130 (361)
T ss_dssp CCSCEEEEESSHHHHHHHHHTTC------------SEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCTT
T ss_pred CCcceEEEcCCHHHHHHHHHHHc------------CcEEEecCChHHHHHHHHHcC-------------CeEEEeecCcc
Confidence 78899999999999999988754 579999999998754433322 22234444322
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
... ++++++++++ + +++++++. ++|++| ..++.+.+++|.++|++||+++|+||+|+++.+.
T Consensus 131 ~~~------------~~~~l~~~l~---~-~~~v~i~~-p~nptG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 192 (361)
T 3ftb_A 131 MCI------------DYEDIISKID---D-VDSVIIGN-PNNPNG-GLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD 192 (361)
T ss_dssp SCC------------CHHHHHHHTT---T-CSEEEEET-TBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC
T ss_pred cCC------------CHHHHHHhcc---C-CCEEEEeC-CCCCCC-CCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC
Confidence 122 5688888886 3 56667766 778888 4567777999999999999999999999987664
Q ss_pred ccccccccCCCCCce---eeeecccC-CCccccEEEE-EcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 252 GKFFACEHAEIWPDF---LCLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 252 g~~~~~~~~~~~~d~---~~~sK~l~-gG~~~ig~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
+........+..+++ .++||.++ +| +++|+++ .++++.+.+.. ...+++.++++++++.++|+..+
T Consensus 193 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~ 263 (361)
T 3ftb_A 193 PSSSFVGEIKNYSCLFIIRAMTKFFAMPG-IRFGYGITNNKEIAAKIKA--------KQNPWNINCFAEMAAINCLKDTN 263 (361)
T ss_dssp TTSSSGGGTTTCSSEEEEEESSSTTSCGG-GCCEEEEESCHHHHHHHHT--------TSCTTCSCHHHHHHHHHTSSCHH
T ss_pred cccchhHhcccCCCEEEEeeChhhcCCCC-cceeEEEeCCHHHHHHHHh--------hCCCCCCCHHHHHHHHHHhcCHH
Confidence 212222223333333 37899998 56 7999998 88899888876 33467889999888888876211
Q ss_pred -hcCHHHHHHHHHHHHHHHHHchhcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------
Q psy14484 327 -KDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------- 397 (430)
Q Consensus 327 -~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------- 397 (430)
-++..++++++.+++.+.|++ ++.+. ..++.|.++++.+. . . . ..++.+.|.++||.+.++
T Consensus 264 ~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-~-~--~---~~~l~~~l~~~gi~v~~g~~~~~~~ 333 (361)
T 3ftb_A 264 YIEESLLWIKKERKRFIEELNK---IGFIKRVFSPHANFVLCRLE-N-I--S---GEKLYDSLLKEDIVIRRCCNFIGLD 333 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---SSSEEEEECCSSSEEEEEES-S-S--C---HHHHHHHHHTTTEECEECTTSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---CCCCceecCCCCeEEEEEcC-C-C--C---HHHHHHHHHHCCeEEeeCccCCCCC
Confidence 123445555566666666654 45555 56778888888776 4 1 1 367999999999999874
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++|++++ ++++++++++.|+++.+.
T Consensus 334 ~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 334 DSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 368999876 888999999998887653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=250.50 Aligned_cols=344 Identities=14% Similarity=0.121 Sum_probs=247.1
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCC-CCCHHHHHHHHHHHhhcccc-c---cCCCCCHHHHHHHHH
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHV-M---LSNLTHKPVIKLSEK 85 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~-~---~~~~~~~~~~~l~~~ 85 (430)
...+.++.+++|. +++ .+|++|+||.++. ++| +.+|++.+++.+++...... . ......+...++++.
T Consensus 20 ~~~~~~~~~~~g~---~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~ 92 (384)
T 1bs0_A 20 LRRRYPVAQGAGR---WLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEE 92 (384)
T ss_dssp CCCCCCCSBCSSS---EEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHH
T ss_pred ccccccccCCCCc---eEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHH
Confidence 3466777788777 688 7999999999872 378 58999999999998764321 1 111345788899999
Q ss_pred HHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 86 l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
+++.++. ++.+++++|++|+..+++++.. +++.|++.++ +|+.........+ .....
T Consensus 93 la~~~g~--~~~i~~~sGt~a~~~~~~~~~~--------~gd~v~~~~~-~~~~~~~~~~~~g------------~~~~~ 149 (384)
T 1bs0_A 93 LAEWLGY--SRALLFISGFAANQAVIAAMMA--------KEDRIAADRL-SHASLLEAASLSP------------SQLRR 149 (384)
T ss_dssp HHHHHTC--SEEEEESCHHHHHHHHHHHHCC--------TTCEEEEETT-CCHHHHHHHHTSS------------SEEEE
T ss_pred HHHHhCC--CcEEEeCCcHHHHHHHHHHhCC--------CCcEEEEccc-ccHHHHHHHHHcC------------CCEEE
Confidence 9999954 4777888889999999987643 4456655554 4555444333322 12233
Q ss_pred eCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccc
Q psy14484 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245 (430)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~ 245 (430)
++.. |+++|++++++..++++++++++ ++|++|.+.+ +++|.++|++||+++|+||+|
T Consensus 150 ~~~~-----------------d~~~l~~~l~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~ 207 (384)
T 1bs0_A 150 FAHN-----------------DVTHLARLLASPCPGQQMVVTEG-VFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAH 207 (384)
T ss_dssp ECTT-----------------CHHHHHHHHHSCCSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred eCCC-----------------CHHHHHHHHHhcCCCCeEEEEeC-CCCCCCCccC----HHHHHHHHHHcCcEEEEECCc
Confidence 3322 78899999986533478999999 9999998887 999999999999999999999
Q ss_pred c-CC-CCcccccccccCCCCCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 246 V-GC-GRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 246 ~-g~-g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
+ ++ +++|..+. +.++..+|++ ++||.++. +.|++++++++++.+... .. .+..+.+.++++++++.++
T Consensus 208 ~~~~~~~~~~~~~-~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~--~~--~~~~~~~~~~~~~~~~~~a 279 (384)
T 1bs0_A 208 GTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQF--AR--HLIYSTSMPPAQAQALRAS 279 (384)
T ss_dssp TTTTSSGGGCCHH-HHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHH--CH--HHHSSBCCCHHHHHHHHHH
T ss_pred ccceecCCCCchH-HhcCCCCcEEEeeccchhhc---cCcEEEeCHHHHHHHHHh--ch--hhhcCCCCCHHHHHHHHHH
Confidence 6 32 33343222 3445568888 89999873 448999999988877641 01 1223446788988888888
Q ss_pred HHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC
Q psy14484 322 LEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG 398 (430)
Q Consensus 322 l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~ 398 (430)
|+.+++ ++..++++++.+++.+.|+++ . +....+.|.++++.+. .. ..+.++.+.|.++||.+.++.
T Consensus 280 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g---~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~l~~~gi~v~~~~ 349 (384)
T 1bs0_A 280 LAVIRSDEGDARREKLAALITRFRAGVQDL-P---FTLADSCSAIQPLIVG-DN-----SRALQLAEKLRQQGCWVTAIR 349 (384)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-S---CEECSCCSSBCCEEEE-SH-----HHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHhc-C---CcccCCCCCEEEEEeC-CH-----HHHHHHHHHHHHCCcEEEeec
Confidence 887652 456777888888888888765 2 1112356777777765 31 114679999999999998752
Q ss_pred --------CEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 399 --------NTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 399 --------~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
+++|++++..++++++++++++|+++
T Consensus 350 ~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 350 PPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp TTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 58999999889999999999999764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=256.80 Aligned_cols=344 Identities=16% Similarity=0.082 Sum_probs=242.9
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc---cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH---VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA 106 (430)
.|++++||.++... ..|+.+|++.+++.+++..... +.......++.+.+++.+.+.++ .++++|++++||++|
T Consensus 32 ~g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a 110 (407)
T 2zc0_A 32 KGVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGA 110 (407)
T ss_dssp SSCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHH
T ss_pred CCCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHH
Confidence 47789999988643 4578899999999999876421 11111233555666666655445 457899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
++.++++++. +++.|++.+++||++...... .+ .....++.+.. . .
T Consensus 111 ~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~-~g------------~~~~~v~~~~~--~-----------~ 156 (407)
T 2zc0_A 111 LDLLGRVLID--------PGDVVITENPSYINTLLAFEQ-LG------------AKIEGVPVDND--G-----------M 156 (407)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHT-TT------------CEEEEEEEETT--E-----------E
T ss_pred HHHHHHHhcC--------CCCEEEEeCCChHHHHHHHHH-cC------------CEEEEcccCCC--C-----------C
Confidence 9999998853 567899999999987543322 11 12223332211 1 1
Q ss_pred HHHHHHHHHH----hCCCCeEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccC
Q psy14484 187 AIFDLEILLK----KNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA 260 (430)
Q Consensus 187 d~~~le~~l~----~~~~~~~~vi-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~ 260 (430)
|+++|+++++ +. .++++|+ ++. ++|++|. ..+.+++++|.++|++||+++|+||+|+++.+.|.. ..+..+
T Consensus 157 d~~~l~~~l~~~~~~~-~~~~~v~~~~~-~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 233 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKG-QKVKLIYTIPT-GQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKAL 233 (407)
T ss_dssp CHHHHHHHHHHHHHTT-CCEEEEEECCS-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGG
T ss_pred CHHHHHHHHHhhhccc-CCceEEEECCC-CCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhc
Confidence 7899999887 32 3677775 555 8888885 567888999999999999999999999988665542 222222
Q ss_pred ---CCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h---hcCHHH
Q psy14484 261 ---EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N---KDNILQ 332 (430)
Q Consensus 261 ---~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~--~---~~~~~~ 332 (430)
+...++.++||.+++| +|+|++++++++++.+.. .....+++.+++++.++.++|+.. + -+...+
T Consensus 234 ~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 306 (407)
T 2zc0_A 234 DNEGRVIVAGTLSKVLGTG-FRIGWIIAEGEILKKVLM------QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALL 306 (407)
T ss_dssp CSSCCEEEEEESTTTTCTT-SCCEEEECCHHHHHHHHH------HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHH
T ss_pred CCCCCEEEEcccccccCCC-cceEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 2223566899999977 799999999998887765 234456677888888888888642 2 245667
Q ss_pred HHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec---------CCEE
Q psy14484 333 RISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI---------GNTV 401 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~---------~~~l 401 (430)
+++++.+++.+.|++. ...... .+..|.++++.+. .+. . +.++.+.|.++ ||.+.++ .+++
T Consensus 307 ~~~~~~~~l~~~L~~~~~~~~~~--~~~~~~~~~~~~~-~~~---~--~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~i 378 (407)
T 2zc0_A 307 GYKEKRDIMLKALENHLPNAEFT--KPIAGMFVMFFLP-EGA---D--GISFANELMEREGVVVVPGKPFYTDESGKNAI 378 (407)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCBC--CCSBSSEEEEECS-TTC---C--HHHHHHHHHHHTCEECBCSGGGCSSSCCTTEE
T ss_pred HHHHHHHHHHHHHHHhCCCCEEe--cCCCcEEEEEEcC-CCC---C--HHHHHHHHHHhCCeEEECchhccCCCCCCCeE
Confidence 7778888888888763 222211 2344667777775 321 1 35789999888 9999873 3689
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|++++.. +++++++++++|++++++++
T Consensus 379 Ris~~~~-~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 379 RLNFSRP-SKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp EEECSSS-CTTHHHHHHHHHHHHHHHHC
T ss_pred EEEeCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 9998876 89999999999999998775
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=260.11 Aligned_cols=344 Identities=15% Similarity=0.094 Sum_probs=239.8
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc----ccccCCCCCHHHHHHHHHHHhhcCC-CCCeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgteA~ 107 (430)
+..+|||.+|.... .++.+|++.+++.+++.... .+....+..++.+.+++.+.+..+. ++++|++|+|+++|+
T Consensus 75 ~~~~i~l~~g~p~~-~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPNP-KTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCCG-GGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCCc-hhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 34689999886543 35788999999999887632 1111123345556666666555565 678999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.++++++. +++.|++.+++|+++.......+ .....++.+.. . .|
T Consensus 154 ~~~~~~l~~--------~Gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~--g-----------~d 199 (448)
T 3aow_A 154 DLIGRVFLN--------PGDIVVVEAPTYLAALQAFNFYE-------------PQYIQIPLDDE--G-----------MK 199 (448)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTC-------------CEEEEEEEETT--E-----------EC
T ss_pred HHHHHHHcC--------CCCEEEEeCCChHHHHHHHHHcC-------------CEEEEeccCCC--C-----------CC
Confidence 999998854 56889999999998754433221 12233332211 1 17
Q ss_pred HHHHHHHHH----hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----ccccc
Q psy14484 188 IFDLEILLK----KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACEH 259 (430)
Q Consensus 188 ~~~le~~l~----~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~----~~~~~ 259 (430)
+++|+++++ +. .++++|++.|.++|++|. ..+.+.+++|.++|++||+++|+||+|+++.+.|.. ..++.
T Consensus 200 ~~~L~~~l~~~~~~~-~~~k~v~~~~~~~NPtG~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~ 277 (448)
T 3aow_A 200 VEILEEKLKELKSQG-KKVKVVYTVPTFQNPAGV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDN 277 (448)
T ss_dssp HHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCT
T ss_pred HHHHHHHHhhhhccC-CCCeEEEECCCCCCCcCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCC
Confidence 899999886 31 368887655537888885 477889999999999999999999999987665542 12222
Q ss_pred CCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh----hcCHHHHHH
Q psy14484 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN----KDNILQRIS 335 (430)
Q Consensus 260 ~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~----~~~~~~~~~ 335 (430)
.+..+++.+|||.++.| +|+|++++++++++.+.. .....+++.+++++.++.++|+... -+...+.++
T Consensus 278 ~~~vi~~~S~SK~~~~G-lriG~v~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~ 350 (448)
T 3aow_A 278 EGRVIYLGTFSKILAPG-FRIGWMVGDPGIIRKMEI------AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYK 350 (448)
T ss_dssp TSCEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCEEEEccchhhcccc-ccEEEEEeCHHHHHHHHH------HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23345677899999977 799999999999887765 2234466778888888888876321 122344455
Q ss_pred HHHHHHHHHHHchhcCC-CeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCEEEEe
Q psy14484 336 QDMKKITKALTSLITHP-KIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLM 404 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~lR~~ 404 (430)
++.+++.+.|++. .| .+.... ..|+++++.+. .+.. +.++++.|.++||.+.|+ .+++|++
T Consensus 351 ~~~~~l~~~L~~~--~~~g~~~~~p~~g~~~~v~~~-~~~~-----~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls 422 (448)
T 3aow_A 351 PRRDAMLEALEEF--MPEGVKWTKPEGGMFIWVTLP-DGID-----SKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLN 422 (448)
T ss_dssp HHHHHHHHHHHHH--CCTTCEECCCSBSSEEEEECS-TTCC-----HHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEE
T ss_pred HHHHHHHHHHHHh--CCCCeEEeCCCccEEEEEEcC-CCCC-----HHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEE
Confidence 6666666666542 23 233333 34677777775 4211 357899999999999874 3689999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++. .++++|++++++|++++++.+
T Consensus 423 ~~~-~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 423 FTY-VDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp CSS-SCTHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 886 489999999999999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=258.24 Aligned_cols=356 Identities=13% Similarity=0.038 Sum_probs=242.3
Q ss_pred eeEEeecCCceeEEEECCCC-------EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHH
Q psy14484 15 LVIRSLKNSWKWSLIDVSGK-------RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~-------~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (430)
.+.++++|+ ++||.+|+ +++||.++ ...++ .+|++.+++.+++......+.. ...++.+.+++.+.
T Consensus 8 ~~~~~~~g~---~~~d~~g~~~g~~~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~~~y~~-~~~~l~~~la~~l~ 80 (399)
T 1c7n_A 8 KISRKNLGS---LKWDLMYSQNPEVGNEVVPLSVA--DMEFK-NPPELIEGLKKYLDETVLGYTG-PTEEYKKTVKKWMK 80 (399)
T ss_dssp CCCCTTTTB---HHHHHHHHHCTTCCTTCCCCCSS--SCSSC-CCHHHHHHHHHHHHHCCCSSBC-CCHHHHHHHHHHHH
T ss_pred cccccCCCc---cccccchhhccccCCCceeeeec--CCCCC-CCHHHHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHH
Confidence 455566666 79998873 78999776 34455 6899999999988653211111 13455566666666
Q ss_pred hhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE
Q psy14484 88 SLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165 (430)
Q Consensus 88 ~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
+.++ .++++|++++||++|++.+++++.. +++.|++..++||++.......+. ....
T Consensus 81 ~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~ 139 (399)
T 1c7n_A 81 DRHQWDIQTDWIINTAGVVPAVFNAVREFTK--------PGDGVIIITPVYYPFFMAIKNQER-------------KIIE 139 (399)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCC--------TTCEEEECSSCCTHHHHHHHTTTC-------------EEEE
T ss_pred HHhCCCCChhhEEEcCCHHHHHHHHHHHhcC--------CCCEEEEcCCCcHhHHHHHHHcCC-------------EEEe
Confidence 5555 5678999999999999999998753 567899999999997654433221 1222
Q ss_pred eCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 166 ITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 166 ~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
++.+ ..... ..|+++|++++++ .++++|++.. ++|++|. .++++++++|.++|++||+++|+||+
T Consensus 140 ~~~~~~~g~~----------~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~ 205 (399)
T 1c7n_A 140 CELLEKDGYY----------TIDFQKLEKLSKD--KNNKALLFCS-PHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEI 205 (399)
T ss_dssp CCCEEETTEE----------ECCHHHHHHHHTC--TTEEEEEEES-SBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECT
T ss_pred cccccCCCCE----------EEcHHHHHHHhcc--CCCcEEEEcC-CCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3221 10000 0178999999963 4678888877 8888885 56788999999999999999999999
Q ss_pred ccCCCCcccc-cccccC-----CCCCceeeeecccC-CCccccEEEEEc-HHHHHhhhccCCcccccccCCC-CCCHHHH
Q psy14484 245 AVGCGRTGKF-FACEHA-----EIWPDFLCLSKGIT-GGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY-SGNPLAC 315 (430)
Q Consensus 245 ~~g~g~~g~~-~~~~~~-----~~~~d~~~~sK~l~-gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~ 315 (430)
|+++.+.|.. ..+... +....+.++||.++ +| +|+|+++++ +++++.+.. .....++ +.+++++
T Consensus 206 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~ 278 (399)
T 1c7n_A 206 HFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTK------SRDATSGMPFTTLGY 278 (399)
T ss_dssp TTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHH------HHHHTTCCCCCHHHH
T ss_pred ccccccCCCCcccHHHcCccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHH------HHhhcccCCCCHHHH
Confidence 9988766532 222221 22234557899998 56 799999997 568877764 2223333 5688888
Q ss_pred HHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE-EEEEeecCCccchhHHHHHHHHHH-HCC
Q psy14484 316 CAALATLEIFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW-AFDVIIEDPEQIETFSKKFFVAAL-KNE 391 (430)
Q Consensus 316 ~aa~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~a~~~~~~l~-~~G 391 (430)
.++.++|+... -+...++++++.+++.+.|++. .+.+...++.|.++ ++.+. .... . ..++.+.|+ ++|
T Consensus 279 ~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~~g 351 (399)
T 1c7n_A 279 KACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVN--HPEIKAPLIEGTYLQWIDFR-ALKM-D---HKAMEEFMIHKAQ 351 (399)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--CTTSBCCCCSBSSEEEEECG-GGCC-C---HHHHHHHHHHTTC
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhh--CCCCeEecCCceEEEEEEcc-cCCC-C---HHHHHHHHHHhCC
Confidence 88888876421 1234445566666676666651 23333344555555 46665 3111 1 357889997 689
Q ss_pred cEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 392 LLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 392 v~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|.+.++ .+++|++++. +++++++++++|+++++++
T Consensus 352 i~v~~g~~~~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 352 IFFDEGYIFGDGGIGFERINLAA--PSSVIQESLERLNKALKDL 393 (399)
T ss_dssp CCCEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCccccCCCCCCeEEEEecc--CHHHHHHHHHHHHHHHHHH
Confidence 999874 3689998875 4889999999999998865
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=259.17 Aligned_cols=342 Identities=11% Similarity=0.044 Sum_probs=236.1
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
+++++||.++... ..||.+|++.+++.+++.........+.......++++.+++.++.++++|++++|+++|++.+++
T Consensus 31 ~~~~i~l~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~ 109 (397)
T 2zyj_A 31 RPGILSFAGGLPA-PELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGK 109 (397)
T ss_dssp STTCEEESSCCCC-GGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCCceecCCCCCC-chhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHH
Confidence 5578999888653 457889999999999887532111111122234567777777776667899999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++.. ++++|++..++||++.......+. ....++.+.. . .|+++|+
T Consensus 110 ~~~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~--~-----------~d~~~l~ 155 (397)
T 2zyj_A 110 VFLD--------EGSPVLLEAPSYMGAIQAFRLQGP-------------RFLTVPAGEE--G-----------PDLDALE 155 (397)
T ss_dssp HHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETT--E-----------ECHHHHH
T ss_pred HhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEecCcCCC--C-----------CCHHHHH
Confidence 8753 567899999999987544333211 2223332211 1 1789999
Q ss_pred HHHHhCCCCeEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccCC------CCC
Q psy14484 193 ILLKKNHNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHAE------IWP 264 (430)
Q Consensus 193 ~~l~~~~~~~~~vi-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~~------~~~ 264 (430)
+++++ .++++|+ +.. ++|++|. .++.+++++|.++|++||+++|+||+|+++.+.|.. ..+..++ ...
T Consensus 156 ~~l~~--~~~~~v~~~~~-~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i 231 (397)
T 2zyj_A 156 EVLKR--ERPRFLYLIPS-FQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI 231 (397)
T ss_dssp HHHHH--CCCSCEEECCB-SCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEE
T ss_pred HHHhh--cCCeEEEECCC-CcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEE
Confidence 99975 2456664 455 7888885 467889999999999999999999999988765542 2222222 223
Q ss_pred ceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHH
Q psy14484 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKI 341 (430)
Q Consensus 265 d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l 341 (430)
.+.++||.+++| +|+|++++++++++.+.. .....+++.+++++.++.++|+... -+...++++++.+++
T Consensus 232 ~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 304 (397)
T 2zyj_A 232 YLGSFSKVLSPG-LRVAFAVAHPEALQKLVQ------AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAM 304 (397)
T ss_dssp EEEESTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccc-ceeEEEecCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 355799999977 799999999998887764 2234456678888888877775321 122344455566666
Q ss_pred HHHHHchhcCC-CeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCEEEEeCCCCCC
Q psy14484 342 TKALTSLITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILN 410 (430)
Q Consensus 342 ~~~l~~l~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~lR~~~~~~~t 410 (430)
.+.|++. .+ ++... +..|.++++.+. .+.. +.++++.|.++||.+.++ .+++|++++.. +
T Consensus 305 ~~~L~~~--~~~g~~~~~~~~g~~~~~~~~-~~~~-----~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~ 375 (397)
T 2zyj_A 305 LHALDRE--VPKEVRYTRPKGGMFVWMELP-KGLS-----AEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATL-D 375 (397)
T ss_dssp HHHHHHH--SCTTSEECCCSBSSEEEEECS-TTCC-----HHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-C
T ss_pred HHHHHHH--CCCCeEEccCCccEEEEEEcC-CCCC-----HHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-C
Confidence 6666542 23 23222 345677777775 4211 367999999999999873 36899998864 8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy14484 411 KNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 411 ~e~i~~~~~~l~~~l~~~~ 429 (430)
++++++++++|++++++++
T Consensus 376 ~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 376 REGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=249.95 Aligned_cols=321 Identities=9% Similarity=0.040 Sum_probs=231.0
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
+++++||.+| .++++ .+|++++++.+++.... .++.....++++.+++.++.+++++++++||++|++.+++
T Consensus 31 ~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 31 LTKITKLSSN--ENPLG-TSKKVAAIQANSSVETE-----IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTR 102 (363)
T ss_dssp CSCCEECSSC--SCTTC-CCHHHHHHHHTCBSCCC-----BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHH
T ss_pred CCceEEccCC--CCCCC-CCHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHH
Confidence 4689999988 55676 68999999988654322 3444556788899999988778899999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++.. +++.|++.+++|+++.......+ .....++.+..+.. |+++++
T Consensus 103 ~~~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l~ 149 (363)
T 3ffh_A 103 VLLD--------TTTNTVMATPTFVQYRQNALIEG-------------AEVREIPLLQDGEH------------DLEGML 149 (363)
T ss_dssp HHCS--------TTCEEEEEESSCHHHHHHHHHHT-------------CEEEEEECCTTSCC------------CHHHHH
T ss_pred HHcc--------CCCEEEEcCCChHHHHHHHHHcC-------------CEEEEecCCCCCCc------------CHHHHH
Confidence 8753 56789999999987644333221 23344554432222 889999
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCc----ee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPD----FL 267 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d----~~ 267 (430)
++++ +++++|+++. ++|++|.+. +.+.+.+|.+.|++ |+++|+||+|+++.+ +.... ....+ .+| +.
T Consensus 150 ~~i~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~-~~~~~i~~~ 221 (363)
T 3ffh_A 150 NAID---EKTTIVWICN-PNNPTGNYI-ELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVR-TYKNLIITR 221 (363)
T ss_dssp HHCC---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGG-TCTTEEEEE
T ss_pred Hhcc---cCCCEEEEeC-CCCCcCCCc-CHHHHHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhh-cCCCEEEEe
Confidence 9885 5688888888 899999655 55556666666665 999999999998766 54322 22222 233 55
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 345 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l 345 (430)
++||.++ +| +|+|++++++++.+.+.. ...+++.++++++++.++|+..+ -++..++++++.+++.+.|
T Consensus 222 s~sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 292 (363)
T 3ffh_A 222 TFSKIYGLAS-ARVGYGIADKEIIRQLNI--------VRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292 (363)
T ss_dssp ESSSTTCCSS-CCCEEEEECHHHHHHHHH--------TCCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhhcCch-hceeeeecCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 56 799999999999988876 23477889999998888886321 1334455666666676666
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
++. +.+...++.|.++++.+. . . ..++.+.|.++||.+.++ ++++|++++ +++++++++++
T Consensus 293 ~~~---~g~~~~~~~~~~~~~~~~-~----~---~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~ 358 (363)
T 3ffh_A 293 KRF---EKVKLYPANGNFVLIDLG-I----E---AGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIAL 358 (363)
T ss_dssp HHC---TTCEECCCCSSEEEEECS-S----C---HHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHH
T ss_pred hhC---CCceECCCCCeEEEEECC-C----C---HHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHH
Confidence 652 333344667888777765 3 1 367999999999999885 379999876 99999999999
Q ss_pred HHHHH
Q psy14484 421 IFQTF 425 (430)
Q Consensus 421 l~~~l 425 (430)
|++++
T Consensus 359 l~~~l 363 (363)
T 3ffh_A 359 LEKLL 363 (363)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98753
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-31 Score=254.22 Aligned_cols=331 Identities=11% Similarity=0.044 Sum_probs=229.3
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCC-HHHHHHHHHHHhhc----CCC--CC-eEEEcCC
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLT----QYK--LG-HCFYGSD 102 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~----~~~--~~-~v~~~~s 102 (430)
.+|++++||.++. ..+| .+|++.+++.+++.... ...+.. ....++++.+++.+ +.. ++ +|++++|
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~---~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g 95 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPT---TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIG 95 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGG---GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESS
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCC---cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCC
Confidence 3688999999884 4677 58999999999875421 113333 34456666666554 643 45 8999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhH
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (430)
+++|++.+++++.. ++++|++.+++||++.......+. ....++.++.+..
T Consensus 96 ~~~a~~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~-------- 146 (376)
T 2dou_A 96 SQEGLAHLLLALTE--------PEDLLLLPEVAYPSYFGAARVASL-------------RTFLIPLREDGLA-------- 146 (376)
T ss_dssp HHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHHHHHTTC-------------EEEEECBCTTSSB--------
T ss_pred cHHHHHHHHHHhcC--------CCCEEEECCCCcHhHHHHHHHcCC-------------EEEEeeCCCCCCC--------
Confidence 99999999998753 567899999999987654433221 2233333221111
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccC-
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHA- 260 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~- 260 (430)
|+++|+++++ +++++++++. ++|++|.+ ++.+++++|.++|++||+++|+||+|+++.+.|... .....
T Consensus 147 ----d~~~l~~~l~---~~~~~v~l~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 217 (376)
T 2dou_A 147 ----DLKAVPEGVW---REAKVLLLNY-PNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPG 217 (376)
T ss_dssp ----CGGGSCHHHH---HHEEEEEECS-SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTT
T ss_pred ----CHHHHHHhhc---cCceEEEECC-CCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCC
Confidence 6778888885 3578888877 88888854 678899999999999999999999999876555321 12222
Q ss_pred --CCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHH
Q psy14484 261 --EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRIS 335 (430)
Q Consensus 261 --~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~ 335 (430)
+....+.++||.++ +| +|+|++++++++++.+.. .....+++.++++++++.++|+..+ -+...++++
T Consensus 218 ~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 290 (376)
T 2dou_A 218 AKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLER------VKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYR 290 (376)
T ss_dssp GGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHH------HHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 22344568999997 56 799999999999887765 2334556678888888888776311 123344556
Q ss_pred HHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPY 407 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~ 407 (430)
++.+++.+.|+++ +....+ .|.++++.+. ... . +.++.+.|.++||.+.++ .+++|++++.
T Consensus 291 ~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~-~~~--~---~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~ 359 (376)
T 2dou_A 291 ERALGMAEALKGV-----LSLLPPRATMYLWGRLP-EGV--D---DLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHHHTTT-----SEECCCCBSSEEEEECC-TTC--C---HHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCS
T ss_pred HHHHHHHHHHHHh-----cCccCCCeeEEEEEECC-CCC--C---HHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecC
Confidence 6666666666543 222233 3556667765 321 1 357899999999999874 3689998874
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l 425 (430)
+++++++++++|++++
T Consensus 360 --~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 360 --PLEELLEAAKRIREAL 375 (376)
T ss_dssp --CHHHHHHHHHHHHHTC
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 8999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=252.41 Aligned_cols=341 Identities=11% Similarity=0.078 Sum_probs=239.1
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.+|++++||.++. ..++ .+|.+.+++.+++.... .+....+..++.+.+++.+.+.++ .+++++++++||++|+
T Consensus 27 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~ 103 (388)
T 1j32_A 27 AEGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence 3688999999884 4566 58999999999886532 111112334566777777776654 3567999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 185 (430)
+.+++++.. ++++|++.+++||++....... + .....++.+. .+..
T Consensus 104 ~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~----------- 151 (388)
T 1j32_A 104 FNLMLAMIE--------PGDEVIIPAPFWVSYPEMVKLA-E------------GTPVILPTTVETQFKV----------- 151 (388)
T ss_dssp HHHHHHHCC--------TTCEEEEESSCCTHHHHHHHHT-T------------CEEEEECCCGGGTTCC-----------
T ss_pred HHHHHHhcC--------CCCEEEEcCCCChhHHHHHHHc-C------------CEEEEecCCcccCCCC-----------
Confidence 999998753 5678999999999875433221 1 1223444331 1111
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----ccccc--
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACEH-- 259 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~----~~~~~-- 259 (430)
|+++|+++++ +++++|++++ ++|++|.+ .+.+.+++|.++|++||+++|+||+|+++.+.|.. ..+..
T Consensus 152 -d~~~l~~~l~---~~~~~v~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1j32_A 152 -SPEQIRQAIT---PKTKLLVFNT-PSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEA 225 (388)
T ss_dssp -CHHHHHHHCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHH
T ss_pred -CHHHHHHhcC---cCceEEEEeC-CCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccc
Confidence 7899998885 4688888888 88888955 56788999999999999999999999988665532 11111
Q ss_pred CCCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHH
Q psy14484 260 AEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQ 336 (430)
Q Consensus 260 ~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~ 336 (430)
.+..+++.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+..+ .++..+++++
T Consensus 226 ~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 298 (388)
T 1j32_A 226 YERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAE 298 (388)
T ss_dssp HHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHH
T ss_pred cCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 234456778999997 46 799999999998887765 3345677888888888888776221 1234556677
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-----CCEEEEeCCCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLMPPYIL 409 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-----~~~lR~~~~~~~ 409 (430)
+.+++.+.|+++ +++....+.+ .++++.+. ... .. +.++++.|.+ +||.+.++ .+++|++++ +
T Consensus 299 ~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~--~~--~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~--~ 368 (388)
T 1j32_A 299 RRRYMLDALNAM---PGLECPKPDGAFYMFPSIA-KTG--RS--SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--T 368 (388)
T ss_dssp HHHHHHHHHHTC---TTCBCCCCCBTTEECCBCG-GGT--CC--HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--S
T ss_pred HHHHHHHHHhhC---CCCcccCCCeeEEEEEecC-CCC--CC--HHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec--C
Confidence 777777777665 3322223333 34444443 201 11 3578888886 69999885 378999876 7
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q psy14484 410 NKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++++++++++|++++++++
T Consensus 369 ~~~~i~~~~~~l~~~l~~~~ 388 (388)
T 1j32_A 369 DLDTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.7e-31 Score=253.25 Aligned_cols=330 Identities=12% Similarity=0.035 Sum_probs=230.2
Q ss_pred ECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC--CCCeEEEcCCchHHH
Q psy14484 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAV 107 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgteA~ 107 (430)
+.+| +++||.++. +.++ .+|+|++++.+++.....+....+..++++++++.+.+.++. ++++|++++||++|+
T Consensus 20 ~~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 20 TPKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CCSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred hccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 3477 899999884 5666 689999999988744333322233456778888888777765 678999999999999
Q ss_pred HHHHHHHHHhhhhcCCCC--CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLN--KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~--~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
+.+++.++. + ++.|++.+++|+++.......+. ....++.+.....
T Consensus 96 ~~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~----------- 143 (376)
T 3ezs_A 96 FNFPSFVLF--------DYQNPTIAYPNPFYQIYEGAAKFIKA-------------KSLLMPLTKENDF----------- 143 (376)
T ss_dssp HHHHHHHTT--------TCSSCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTS-----------
T ss_pred HHHHHHHcC--------CCCCCEEEEecCCcHhHHHHHHHcCC-------------EEEEcccCCCCCc-----------
Confidence 999998864 4 78999999999987554333221 2233433321111
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-c------
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-E------ 258 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~------ 258 (430)
++ ++++.+.+ +++++++.. ++|++|. .++.+.+++|.++|++||+++|+||+|+++.+.+..... .
T Consensus 144 -~~-~l~~~~~~---~~~~v~~~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 216 (376)
T 3ezs_A 144 -TP-SLNEKELQ---EVDLVILNS-PNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAG 216 (376)
T ss_dssp -CC-CCCHHHHH---HCSEEEECS-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTT
T ss_pred -ch-hHHhhhcc---CCCEEEEcC-CCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccccc
Confidence 12 45555542 456677666 7888884 557778999999999999999999999988776643322 1
Q ss_pred --cCCCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHH
Q psy14484 259 --HAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRI 334 (430)
Q Consensus 259 --~~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~ 334 (430)
..+....+.++||.++ .| +|+|++++++++++.+.. ..+..+++.+++++.++.++|+..+. +...+++
T Consensus 217 ~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 289 (376)
T 3ezs_A 217 NEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKA------FRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIY 289 (376)
T ss_dssp CTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred ccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHH------HHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHH
Confidence 2344455678999996 56 899999999999888765 33456778899999888888763110 1223333
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec---------CCEEEEe
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI---------GNTVYLM 404 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~---------~~~lR~~ 404 (430)
+++.+++.+.|+ .+. .+..|.++++.+. + ...+++.|.+ +||.+.++ .+++|++
T Consensus 290 ~~~~~~l~~~l~------~~~-~~~~~~~~~~~~~-~--------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis 353 (376)
T 3ezs_A 290 ANNLKLARKIFK------NTL-IYPYSFYVYLPVQ-N--------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLA 353 (376)
T ss_dssp HHHHHHHHHHST------TCC-CCSBSSEEEEECS-C--------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEE
T ss_pred HHHHHHHHHHhc------CCC-CCCcceEEEEECC-C--------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEE
Confidence 444444444433 222 3455677766654 2 3678888887 89999873 3789998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++ .+++++++++++|++++++
T Consensus 354 ~~--~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 354 LV--YDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp CC--SCHHHHHHHHHHHHHHHCC
T ss_pred Ec--CCHHHHHHHHHHHHHHHHh
Confidence 76 3999999999999998764
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=251.03 Aligned_cols=340 Identities=12% Similarity=0.045 Sum_probs=237.9
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCC-eEEEcCC
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLG-HCFYGSD 102 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~-~v~~~~s 102 (430)
+++|.+|+++|||.+|. ..++ .+|.|++++.+++.....+....+..++++++++.+.+.++ .+++ +|++++|
T Consensus 23 ~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g 99 (396)
T 3jtx_A 23 GISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLG 99 (396)
T ss_dssp TCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESS
T ss_pred hhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCC
Confidence 36678999999999984 4555 68999999999876544333333445777888888887766 3478 9999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCC----cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCC
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNK----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGN 178 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~----~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
+++|++.++++++.. ++ +.|++..++|+++.......+. ....++.+......
T Consensus 100 ~~~al~~~~~~~~~~-------g~~~~~d~vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~g~~~--- 156 (396)
T 3jtx_A 100 SREALFSFVQTVLNP-------VSDGIKPAIVSPNPFYQIYEGATLLGGG-------------EIHFANCPAPSFNP--- 156 (396)
T ss_dssp HHHHHHHHHHHHCCC----------CCCCEEEEEESCCHHHHHHHHHTTC-------------EEEEEECCTTTCCC---
T ss_pred cHHHHHHHHHHHhCC-------CCccCCCEEEEcCCCcHhHHHHHHHcCC-------------EEEEeecCCCCCcc---
Confidence 999999999988641 32 7899999999987554333222 22344432211111
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc-ccccc
Q psy14484 179 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG-KFFAC 257 (430)
Q Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g-~~~~~ 257 (430)
|+++|++++++ ++++++++. ++|++|. ..+.+.+++|.++|++||+++|+||+|+++.+.+ .....
T Consensus 157 --------d~~~l~~~~~~---~~~~v~l~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 223 (396)
T 3jtx_A 157 --------DWRSISEEVWK---RTKLVFVCS-PNNPSGS-VLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGC 223 (396)
T ss_dssp --------CGGGSCHHHHH---TEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCH
T ss_pred --------CHHHHHHhhcc---CcEEEEEEC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchH
Confidence 67888888873 677888777 8888885 5566779999999999999999999999887766 33222
Q ss_pred -c-------cCCCCCceeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-h
Q psy14484 258 -E-------HAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-K 327 (430)
Q Consensus 258 -~-------~~~~~~d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~ 327 (430)
. ..+..+++.++||.++. | +|+|++++++++++.+.. .....+++.+++++.++.++|+..+ -
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~ 296 (396)
T 3jtx_A 224 LQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLL------YRTYHGSAMSIPVQRASIAAWDDEQHV 296 (396)
T ss_dssp HHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHH------HHHHHTCCCCHHHHHHHHHHHHCCHHH
T ss_pred HhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCHHHHHHHHHHhCCHHHH
Confidence 1 13444567789998764 5 899999999999888765 3345567889999988888876211 1
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec---------
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------- 397 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~--------- 397 (430)
....++++++.+++.+.|+++ .+. ..+..|.++++.+. . . . ...+++.|+ ++||.+.|+
T Consensus 297 ~~~~~~~~~~~~~l~~~l~~~--~~~--~~~~~~~~~~~~~~-~-~--~---~~~~~~~l~~~~gi~v~~g~~~~~~~~~ 365 (396)
T 3jtx_A 297 IDNRRLYQEKFERVIPILQQV--FDV--KLPDASFYIWLKVP-D-G--D---DLAFARNLWQKAAIQVLPGRFLARDTEQ 365 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--SCC--CCCSSSSEEEEECT-T-S--C---HHHHHHHHHHHHCEECEEGGGGCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCc--cCCCeeEEEEEECC-C-C--C---HHHHHHHHHHHCCEEEeCChHhCCcccc
Confidence 223344555555565655543 111 12233666666665 3 1 1 356888885 569999873
Q ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 398 ----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 398 ----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+++||+++. +++++++++++|++++
T Consensus 366 ~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 366 GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 2689998764 9999999999998764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.3e-31 Score=257.57 Aligned_cols=354 Identities=10% Similarity=0.032 Sum_probs=237.8
Q ss_pred eeEEeecCCceeEEEECCCC---EEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhh
Q psy14484 15 LVIRSLKNSWKWSLIDVSGK---RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSL 89 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~ 89 (430)
.++...++. ++.+..++ +++||.+|... +++ .+|+|++++.+++..... +....+..+..+++++++++.
T Consensus 20 ~~~~~~~~~---~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~ 94 (407)
T 3nra_A 20 EVRQSAAGL---EALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAF 94 (407)
T ss_dssp -------CC---TTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh---HHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 344455444 24333333 49999987432 344 689999999999876432 222344567888999999998
Q ss_pred cCCC--C-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 90 TQYK--L-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 90 ~~~~--~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
++.. + +++++++||++|+..+++++.. +++.|++..++|+++......... ....+
T Consensus 95 ~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~--------~gd~vl~~~~~~~~~~~~~~~~g~-------------~~~~~ 153 (407)
T 3nra_A 95 TGAPVDARDGLIITPGTQGALFLAVAATVA--------RGDKVAIVQPDYFANRKLVEFFEG-------------EMVPV 153 (407)
T ss_dssp HTSCCCTTTSEEEESHHHHHHHHHHHTTCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEE
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhCC--------CCCEEEEcCCcccchHHHHHHcCC-------------EEEEe
Confidence 8643 3 7999999999999999987743 667899999999976544333221 22333
Q ss_pred CC------CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEE
Q psy14484 167 TT------PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLI 240 (430)
Q Consensus 167 ~~------~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li 240 (430)
+. ++.+.. |+++|++++++ +++++++.. ++|++| ..++.+.+++|.++|++||+++|
T Consensus 154 ~~~~~~~~~~~~~~------------d~~~l~~~l~~---~~~~v~~~~-p~nptG-~~~~~~~l~~i~~~~~~~~~~li 216 (407)
T 3nra_A 154 QLDYVSADETRAGL------------DLTGLEEAFKA---GARVFLFSN-PNNPAG-VVYSAEEIGQIAALAARYGATVI 216 (407)
T ss_dssp EBCCCSSCCSSCCB------------CHHHHHHHHHT---TCCEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEE
T ss_pred ecccccccCcCCCc------------CHHHHHHHHhh---CCcEEEEcC-CCCCCC-cccCHHHHHHHHHHHHHcCCEEE
Confidence 33 122222 88999999974 566666666 778888 45678889999999999999999
Q ss_pred EeccccCCCCccccc-ccccCC-----CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHH
Q psy14484 241 ADEIAVGCGRTGKFF-ACEHAE-----IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313 (430)
Q Consensus 241 ~DEv~~g~g~~g~~~-~~~~~~-----~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 313 (430)
+||+|+++.+.|..+ .+...+ ...++.++||.++ .| +|+|++++++++++.+.. .....+++.+++
T Consensus 217 ~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~ 289 (407)
T 3nra_A 217 ADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEK------LQAIVSLRAAGY 289 (407)
T ss_dssp EECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHH------HHHHHTSSSCHH
T ss_pred EEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHH------HHhhhccCCChH
Confidence 999999887665432 222222 2234568999998 56 799999999999887765 334456667787
Q ss_pred HHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHH-
Q psy14484 314 ACCAALATLEIFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALK- 389 (430)
Q Consensus 314 ~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~- 389 (430)
+++++.++|+... -++..++++++.+++.+.|+++ +.+....+. |.++++.+. .... . +.++.+.|++
T Consensus 290 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~ 361 (407)
T 3nra_A 290 SQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRGC---EGVFARTPQAGSYLFPRLP-KLAV-A---PAEFVKILRLQ 361 (407)
T ss_dssp HHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHTS---TTCBCCCCSBSSEECCBCC-CBSS-C---HHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcC---CCceeccCCeeEEEEEeCC-CCCC-C---HHHHHHHHHHh
Confidence 7777666664110 1223445566666666666654 333333344 466665555 3111 1 3578888865
Q ss_pred CCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 390 NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 390 ~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||.+.++ .+++|++++. ++++|++++++|+++++++
T Consensus 362 ~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 362 AGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp HCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence 59999874 3689998873 9999999999999998865
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=253.75 Aligned_cols=343 Identities=13% Similarity=0.073 Sum_probs=233.3
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCC-CeEEEcCCchH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGAS 105 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~v~~~~sgte 105 (430)
.+|++++||.++. ..+| .+|.+.+++.+++..... +....+..++.+.+++.+.+.++ .++ ++|++++||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4788999999884 4677 789999999988765311 11112233555666666655545 356 69999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.+++++.. +++.|++.+++||++.......+ .....++.+.... + .
T Consensus 111 a~~~~~~~~~~--------~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~---------~-~ 159 (412)
T 2x5d_A 111 GLAHLMLATLD--------HGDTILVPNPSYPIHIYGAVIAG-------------AQVRSVPLVPGID---------F-F 159 (412)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHHT-------------CEEEEEECSTTSC---------H-H
T ss_pred HHHHHHHHhCC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCCccC---------C-C
Confidence 99999998753 56789999999998755433221 1223333322100 0 1
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-cccccc----C
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEH----A 260 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~----~ 260 (430)
.|+++|+++++ +++++|++.. ++|++|. .++.+.+++|.++|++||+++|+||+|+++.+.|. ...+.. .
T Consensus 160 ~d~~~l~~~i~---~~~~~v~l~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 234 (412)
T 2x5d_A 160 NELERAIRESI---PKPRMMILGF-PSNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAK 234 (412)
T ss_dssp HHHHHHHHTEE---SCCSEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGG
T ss_pred CCHHHHHHhcc---cCceEEEECC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCcc
Confidence 27888888875 3566666666 7788885 56778999999999999999999999998866553 112211 2
Q ss_pred CCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHH
Q psy14484 261 EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQD 337 (430)
Q Consensus 261 ~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~ 337 (430)
+....+.++||.++ +| +|+|++++++++++.+.. .....+++.+++++.++.++|+..+ .+...++++++
T Consensus 235 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (412)
T 2x5d_A 235 DIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALAR------IKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQR 307 (412)
T ss_dssp GTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred CcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23334568999998 57 799999999999887765 2344567889999988888886321 13455666777
Q ss_pred HHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYI 408 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~ 408 (430)
.+++.+.|+++ .... ..+. |.++++.+. ....... +..+++.|++ +||.+.++ .+++|++++.
T Consensus 308 ~~~l~~~L~~~-g~~~---~~~~~g~~~~~~~~-~~~~~~~--~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~- 379 (412)
T 2x5d_A 308 RDVLVKGLREA-GWMV---ENPKASMYVWAKIP-EPYAHLG--SLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIE- 379 (412)
T ss_dssp HHHHHHHHHHH-TCCC---CCCSBSSEEEEECC-TTTGGGC--HHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-
T ss_pred HHHHHHHHHHC-CCEe---cCCCeeeEEEEEcC-CccCCCC--HHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecC-
Confidence 77888887765 2222 2334 556667665 3210001 3578888865 69999875 3689998885
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++++++++++|+++++++
T Consensus 380 -~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 380 -NRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999998763
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=255.78 Aligned_cols=345 Identities=12% Similarity=0.063 Sum_probs=240.4
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc----ccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgte 105 (430)
+..++||.+|... ..|+.+|++.+++.+++.... .+.......++.+++++.+.+.++ .++++|++++|+++
T Consensus 42 ~~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVPD-PETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSCC-GGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCCC-cccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 5679999988653 458889999999999887532 111112234566666666655545 56789999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
|++.+++++.. +++.|++.+++|+++.......+. ....++.+.. .
T Consensus 121 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--~----------- 166 (425)
T 1vp4_A 121 ALDLIGKLFLD--------DESYCVLDDPAYLGAINAFRQYLA-------------NFVVVPLEDD--G----------- 166 (425)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEETT--E-----------
T ss_pred HHHHHHHHhCC--------CCCEEEEeCCCcHHHHHHHHHcCC-------------EEEEeccCCC--C-----------
Confidence 99999998753 568899999999987544333211 2223332211 1
Q ss_pred HHHHHHHHHHHhC-----CCCeEEEE-EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccc
Q psy14484 186 CAIFDLEILLKKN-----HNKIAAII-IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACE 258 (430)
Q Consensus 186 ~d~~~le~~l~~~-----~~~~~~vi-~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~ 258 (430)
.|+++|++++++. ..++++|+ +.. ++|++|. .++.+.+++|.++|+++|+++|+||+|+++.+.|.. ..+.
T Consensus 167 ~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~-~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 244 (425)
T 1vp4_A 167 MDLNVLERKLSEFDKNGKIKQVKFIYVVSN-FHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIF 244 (425)
T ss_dssp ECHHHHHHHHHHHHHTTCGGGEEEEEEECS-SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHH
T ss_pred CCHHHHHHHHHhhhhcccCCCceEEEECCC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence 1789999988741 12678874 555 7888885 467888999999999999999999999988665542 2222
Q ss_pred cC---CCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--h--hcCHH
Q psy14484 259 HA---EIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF--N--KDNIL 331 (430)
Q Consensus 259 ~~---~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~--~--~~~~~ 331 (430)
.+ +....+.++||.+++| +|+|++++++++++.+.. .....+++.+++++.++.++|+.. + -+...
T Consensus 245 ~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 317 (425)
T 1vp4_A 245 KIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQ------AKQSADLCSPAITHRLAARYLERYDLLEQLKPTI 317 (425)
T ss_dssp HHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHH
T ss_pred HhCCCCCEEEEeccccccccc-cceEEEeeCHHHHHHHHH------HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 12 2222355899999966 799999999998887764 223445667889888888888752 1 13345
Q ss_pred HHHHHHHHHHHHHHHch-hcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCE
Q psy14484 332 QRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNT 400 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l-~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~ 400 (430)
++++++.+++.+.|++. ...+++... +..|.++++.+. .+.. +.++++.|.++||.+.++ .++
T Consensus 318 ~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~-----~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~ 391 (425)
T 1vp4_A 318 ELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP-EGFD-----TWEMFEYAKRKKVFYVPGRVFKVYDEPSPS 391 (425)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC-TTCC-----TTTTHHHHHHHTEECEEGGGGCTTCCCCSE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC-CCCC-----HHHHHHHHHHCCCEEECchhhcCCCCCCCe
Confidence 56667777888887764 221133322 345677777776 4211 245888888889999874 368
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+||+++.. +++++++++++|++++.++
T Consensus 392 iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 392 MRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp EEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99998864 8999999999999998764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=242.68 Aligned_cols=322 Identities=12% Similarity=0.083 Sum_probs=227.9
Q ss_pred EecccccccccCCCCCHHHHHHHHHHHhhccccccCCCC----CHHHHHHHHHHHhh--cCCCCCeEEEcCCchHHHHHH
Q psy14484 37 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT----HKPVIKLSEKLSSL--TQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 37 lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~--~~~~~~~v~~~~sgteA~~~a 110 (430)
+||.++. +++| .+|++.+++.+++.+..... ..+. .+..+.+++.+.+. ++.++++|++++|+++|++.+
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~ 108 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL 108 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH
Confidence 8998884 4677 78999999999987632111 1222 23334444444443 445678999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++.. +++.|++.+++||++.......+ .....++.++.+.. |+++
T Consensus 109 ~~~l~~--------~gd~Vl~~~~~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~ 155 (369)
T 3cq5_A 109 LQAFGG--------PGRTALGFQPSYSMHPILAKGTH-------------TEFIAVSRGADFRI------------DMDV 155 (369)
T ss_dssp HHHHCS--------TTCEEEEEESSCTHHHHHHHHTT-------------CEEEEEECCTTSSC------------CHHH
T ss_pred HHHhcC--------CCCEEEEcCCChHHHHHHHHHcC-------------CEEEEecCCcCCCC------------CHHH
Confidence 998753 56889999999998754433322 12234443332222 7899
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-ccCC-CCCceee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAE-IWPDFLC 268 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~~-~~~d~~~ 268 (430)
++++++++ ++++|++++ ++|++|.+.+ ++++.++|+.+++++|+||+|+++.+....... +..+ ..+.+.+
T Consensus 156 l~~~i~~~--~~~~v~~~~-~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s 228 (369)
T 3cq5_A 156 ALEEIRAK--QPDIVFVTT-PNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRT 228 (369)
T ss_dssp HHHHHHHH--CCSEEEEES-SCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEE
T ss_pred HHHHhhcc--CCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEe
Confidence 99998742 567788888 9999997776 777778888888999999999977643222221 2233 3355668
Q ss_pred eecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~ 346 (430)
+||.++ +| +|+|++++++++++.+.. ...+++.+++++.++.++|+..+ -+...++++++.+++.+.|+
T Consensus 229 ~sK~~~~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (369)
T 3cq5_A 229 MSKAFDFAG-GRLGYFVANPAFIDAVML--------VRLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLE 299 (369)
T ss_dssp SSSTTSCGG-GCCEEEEECTHHHHHHHT--------TSCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred chHhcCCcc-cceEEEEeCHHHHHHHHH--------cCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 56 799999999998888775 23456788999988888887432 24566777778888888887
Q ss_pred chhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 347 SLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 347 ~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
+. . +...++.|.++++.+. .+ +.++.+.|.++||.+.++ ++++|++++ +++++++++++|+++
T Consensus 300 ~~-g---~~~~~~~~~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~ 364 (369)
T 3cq5_A 300 EL-G---YAVVPSESNFVFFGDF-SD-------QHAAWQAFLDRGVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEI 364 (369)
T ss_dssp HH-T---CEEECCSSSEEEEECC-SS-------HHHHHHHHHHTTEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred hC-C---CEECCCCCeEEEEECC-CC-------HHHHHHHHHHCCEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHH
Confidence 64 2 2233566778777654 21 357888999999999887 478999887 899999999999987
Q ss_pred HH
Q psy14484 425 FN 426 (430)
Q Consensus 425 l~ 426 (430)
+.
T Consensus 365 ~~ 366 (369)
T 3cq5_A 365 IK 366 (369)
T ss_dssp HT
T ss_pred Hh
Confidence 64
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-30 Score=251.27 Aligned_cols=341 Identities=11% Similarity=0.076 Sum_probs=239.5
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-cc-ccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCc
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HV-MLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDG 103 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~-~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sg 103 (430)
+.+.+|++++||.++. +.++ .+|++++++.+++.... .. ....+..++++.+++.+.+.++ ..+++|++|+||
T Consensus 38 ~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~ 114 (437)
T 3g0t_A 38 LEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGS 114 (437)
T ss_dssp HHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHH
T ss_pred HHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCH
Confidence 4456789999999984 4565 68999999999887532 11 1112223555666666665443 356799999999
Q ss_pred hHHHHHHHHHHH--HhhhhcCCCCCc--EEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCC
Q psy14484 104 ASAVEVALKMSF--HYWYNKGFLNKK--KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGN 178 (430)
Q Consensus 104 teA~~~al~~~~--~~~~~~g~~~~~--~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 178 (430)
++|++.+++.++ . +++ +|++.+++|+++.......+ .....++.+ +.+.
T Consensus 115 t~al~~~~~~l~~~~--------~gd~~~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~----- 168 (437)
T 3g0t_A 115 MQGCFVSFLVANRTH--------KNREYGTLFIDPGFNLNKLQCRILG-------------QKFESFDLFEYRGE----- 168 (437)
T ss_dssp HHHHHHHHHHHTTSC--------TTCSCCEEEEESCCHHHHHHHHHHT-------------CCCEEEEGGGGCTT-----
T ss_pred HHHHHHHHHHHhcCC--------CCCccEEEEeCCCcHhHHHHHHHcC-------------CEEEEEeecCCCCc-----
Confidence 999999999886 4 456 89999999998754433322 222344432 1111
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----
Q psy14484 179 SANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF---- 254 (430)
Q Consensus 179 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~---- 254 (430)
.|+++|+++++. .++++|++.. ++|++|. ..+.+.+++|.++|++||+++|+||+|+++.+.+..
T Consensus 169 -------~d~~~l~~~l~~--~~~~~v~l~~-p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~ 237 (437)
T 3g0t_A 169 -------KLREKLESYLQT--GQFCSIIYSN-PNNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPG 237 (437)
T ss_dssp -------HHHHHHHHHHTT--TCCCEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTT
T ss_pred -------cCHHHHHHHHhc--CCceEEEEeC-CCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCccc
Confidence 289999999942 4566666665 6788884 556777999999999999999999999976544321
Q ss_pred -----ccccc-CCCCCceeeeecccC-CCccccEEEEEcHHHHH-h-----------------hhccCCcccccccCCCC
Q psy14484 255 -----FACEH-AEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN-S-----------------IYYKNNINIFLHSHSYS 309 (430)
Q Consensus 255 -----~~~~~-~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~t~~ 309 (430)
..+.. .+....+.++||.++ .| +++|++++++++++ . +.. .....+++
T Consensus 238 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 310 (437)
T 3g0t_A 238 EPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS------ALYALSSG 310 (437)
T ss_dssp SSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT------HHHHHHSS
T ss_pred ccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHH------HHhhhcCC
Confidence 11111 222233557899998 57 79999999999887 6 443 33445678
Q ss_pred CCHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHchhcCCCeeeE-------e-ecceEEEEEEeecCCccc
Q psy14484 310 GNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINF-------R-QKGMIWAFDVIIEDPEQI 376 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-------~-~~g~~~~~~~~~~~~~~~ 376 (430)
.+++++.++.++|+..+ .++..++++++.+++.+.|+++ ++... + ..|.++++.+. ..
T Consensus 311 ~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 381 (437)
T 3g0t_A 311 ATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYK-GM---- 381 (437)
T ss_dssp SCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEET-TC----
T ss_pred CCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecC-CC----
Confidence 89999999988887654 2345667777888888888765 22222 3 45666766664 21
Q ss_pred hhHHHHHHHHHHHCCcEEeecC-------CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 377 ETFSKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 377 ~~~a~~~~~~l~~~Gv~~~~~~-------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
. ...+.+.|.++||.+.++. +++|++++. .+++++++++++|++++++
T Consensus 382 ~--~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 382 D--SSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp C--HHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred C--HHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 1 3679999999999999863 679999984 4999999999999998764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=253.92 Aligned_cols=349 Identities=11% Similarity=0.075 Sum_probs=237.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhc--cccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.++.++||..|. ..++ .+|.+.+++.+++... ..+....+..++.+++++.+.+.++ .++++|++|+||++|+
T Consensus 55 ~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGF--FSYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCS--CSSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 577899998884 3555 6899999999988752 2222222334666777777776654 3456899999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCC-CCCCCChhHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN-INKGNSANEIARC 186 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 186 (430)
+.+++++.. +++.|++.+++||++.......+. ....++...... .........+ ..
T Consensus 132 ~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~~~~~~~~~-~~ 189 (447)
T 3b46_A 132 LSCLMGLLN--------AGDEVIVFEPFFDQYIPNIELCGG-------------KVVYVPINPPKELDQRNTRGEEW-TI 189 (447)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEEEECCGGGGTSCBCSTTS-EE
T ss_pred HHHHHHHcC--------CCCEEEEeCCCchhHHHHHHHcCC-------------EEEEEeCCCccccccccccccCc-cc
Confidence 999998754 568899999999987554433222 112232211100 0000000000 02
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc---c--ccCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA---C--EHAE 261 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~---~--~~~~ 261 (430)
|+++|+++++ +++++|++++ ++|++|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|.... + ...+
T Consensus 190 d~~~l~~~l~---~~~~~v~l~~-p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 264 (447)
T 3b46_A 190 DFEQFEKAIT---SKTKAVIINT-PHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ 264 (447)
T ss_dssp CHHHHHTTCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT
T ss_pred CHHHHHHhhc---cCCeEEEEeC-CCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC
Confidence 7889988885 5788888888 89999954 6689999999999999999999999998876553111 2 1234
Q ss_pred CCCceeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC----HHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRIS 335 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~----~~~~~~ 335 (430)
..+.+.++||.++ .| +|+|++++ ++++++.+.. ..+..+++.+++++.++.++|+....++ ..++++
T Consensus 265 ~~i~i~S~sK~~~~~G-~riG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~ 337 (447)
T 3b46_A 265 LTLTVGSAGKSFAATG-WRIGWVLSLNAELLSYAAK------AHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYI 337 (447)
T ss_dssp TEEEEEEHHHHTTCTT-SCCEEEECSCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEEecCchhcCCcc-hhhEEEEeCCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 5566778999998 57 79999999 9999887765 2345677888898888888887653233 445667
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccc----------hhHHHHHHHHHH-HCCcEEeec-------
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI----------ETFSKKFFVAAL-KNELLLRPI------- 397 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~a~~~~~~l~-~~Gv~~~~~------- 397 (430)
++.+++.+.|+++ .... ..+..|.++++++. ...... .....++++.|. ++||.+.|+
T Consensus 338 ~~~~~l~~~L~~~-g~~~--~~~~~g~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~ 413 (447)
T 3b46_A 338 NKFKIFTSIFDEL-GLPY--TAPEGTYFVLVDFS-KVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKE 413 (447)
T ss_dssp HHHHHHHHHHHHH-TCCE--ECCSBSSEEEEECT-TCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGG
T ss_pred HHHHHHHHHHHHC-CCee--cCCCeeEEEEEecc-cccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCC
Confidence 7777777777765 2222 12334667777665 310000 011357888886 589999875
Q ss_pred -----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 398 -----GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 398 -----~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.+++||+++ .++++|++++++|++
T Consensus 414 ~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 414 HEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp GGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred ccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 478999877 489999999999976
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=246.62 Aligned_cols=336 Identities=13% Similarity=0.083 Sum_probs=234.7
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCe-EEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGH-CFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~-v~~~~sgteA~~~ 109 (430)
..++||.++. ..++ .+|++.+++.+++..... +.......++.+.+++.+.+.++ .++++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 4688998874 4566 689999999998875321 11112334566677777766555 46778 9999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCA 187 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 187 (430)
+++++.. +++.|++.+++||++.......+ .....++.+. .+.. |
T Consensus 103 ~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~------------d 149 (389)
T 1gd9_A 103 GLSAFLK--------DGEEVLIPTPAFVSYAPAVILAG-------------GKPVEVPTYEEDEFRL------------N 149 (389)
T ss_dssp HHTTTCC--------TTCEEEEEESCCTTHHHHHHHHT-------------CEEEEEECCGGGTTCC------------C
T ss_pred HHHHhCC--------CCCEEEEcCCCchhHHHHHHHCC-------------CEEEEeccCCccCCCC------------C
Confidence 9987743 56889999999998754332211 1223344321 1111 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccC-C-CCC
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA-E-IWP 264 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~-~-~~~ 264 (430)
+++|+++++ ++++++++++ ++|++|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|. ...+..+ + ...
T Consensus 150 ~~~l~~~l~---~~~~~v~~~~-~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 224 (389)
T 1gd9_A 150 VDELKKYVT---DKTRALIINS-PCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFER 224 (389)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHHhcC---cCceEEEEEC-CCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCC
Confidence 899998885 3678888887 88888854 6788899999999999999999999998866554 2222222 2 123
Q ss_pred c--eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHH
Q psy14484 265 D--FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQD 337 (430)
Q Consensus 265 d--~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~ 337 (430)
| +.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+.... +...++++++
T Consensus 225 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (389)
T 1gd9_A 225 TITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 297 (389)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecChhhcCCcc-cceEEEEECHHHHHHHHH------HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 4 447899997 46 799999999999887765 23455677888888888888864322 3345566777
Q ss_pred HHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
.+++.+.|+++ ...... +..|.++++.+. .... . +.++.+.|. ++||.+.++ .+++||+++.
T Consensus 298 ~~~l~~~L~~~-g~~~~~--~~~~~~~~~~~~-~~~~--~--~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-- 367 (389)
T 1gd9_A 298 RKLVWKRLNEM-GLPTVK--PKGAFYIFPRIR-DTGL--T--SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-- 367 (389)
T ss_dssp HHHHHHHHHHT-TCCCCC--CCBTTEECCBCG-GGTC--C--HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS--
T ss_pred HHHHHHHHHHc-CCeecC--CCeeeEEEEecc-CCCC--C--HHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC--
Confidence 77777777765 322211 223455555554 2111 1 357889987 899999875 3689998774
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
+++++++++++|++++++
T Consensus 368 ~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 368 AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999999875
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=248.75 Aligned_cols=328 Identities=13% Similarity=0.152 Sum_probs=226.1
Q ss_pred ECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH
Q psy14484 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~ 109 (430)
+.+|++++||.++. +++| .+|++.+++.+++.... .++.....++++.+++.++.+++++++++|+++|++.
T Consensus 20 ~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~ 91 (364)
T 1lc5_A 20 GISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIE-----RYPDADYFHLHQALARHHQVPASWILAGNGETESIFT 91 (364)
T ss_dssp TSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGG-----SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHH
T ss_pred CCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHH
Confidence 45788999998874 5677 78999999999876532 2223335678888888887777899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH-H
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA-I 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~ 188 (430)
+++++ . + ++|++..++||++.......+. ....++.+..... + +
T Consensus 92 ~~~~~-~--------g-d~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~------------~~l 136 (364)
T 1lc5_A 92 VASGL-K--------P-RRAMIVTPGFAEYGRALAQSGC-------------EIRRWSLREADGW------------QLT 136 (364)
T ss_dssp HHHHH-C--------C-SEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTT------------CCC
T ss_pred HHHHc-C--------C-CeEEEeCCCcHHHHHHHHHcCC-------------eEEEEeCCccccc------------chh
Confidence 99987 2 5 7899999999987654433221 2233333210000 1 2
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-ccc-ccCCCCCce
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FAC-EHAEIWPDF 266 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~-~~~~~~~d~ 266 (430)
+++.+.+ .++++++++.. ++|++|. ..+.+++++|.++|++||+++|+||+|+++.+.+.. ... +..+....+
T Consensus 137 ~~~~~~~---~~~~~~v~i~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 137 DAILEAL---TPDLDCLFLCT-PNNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TTHHHHC---CTTCCEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred HHHHHhc---cCCCCEEEEeC-CCCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEE
Confidence 3233333 24556666655 6777884 567899999999999999999999999987654322 111 222333345
Q ss_pred eeeecccC-CCccccEEEE-EcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHH
Q psy14484 267 LCLSKGIT-GGYLPLSLVM-TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITK 343 (430)
Q Consensus 267 ~~~sK~l~-gG~~~ig~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~ 343 (430)
.++||.++ +| +|+|+++ +++++++.+.. ...+++.+++++.++.++|+..+ -+...++++++.+++.+
T Consensus 212 ~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 282 (364)
T 1lc5_A 212 RSLTKFYAIPG-LRLGYLVNSDDAAMARMRR--------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQ 282 (364)
T ss_dssp EESTTTTTCTT-TCCEEEECCCHHHHHHHHH--------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECchhhcCCc-cceEEEEECCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 58999998 56 7999999 99999888765 23467788998888888776311 12334445556666666
Q ss_pred HHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHH
Q psy14484 344 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQH 416 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~ 416 (430)
.|+++ +.+...++.|.++++.+. .+ ...+.+.|.++||.+.++ ++++|+++. +++++++
T Consensus 283 ~L~~~---~~~~~~~~~g~~~~~~~~-~~-------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~---~~~~~~~ 348 (364)
T 1lc5_A 283 ALCQL---PLLTVYPGRANYLLLRCE-RE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNER 348 (364)
T ss_dssp HHHTS---TTEEECCCSSSEEEEEES-CT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHH
T ss_pred HHhcC---CCCEECCCCCeEEEEECC-Cc-------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC---CHHHHHH
Confidence 66543 444444667888887776 42 135888899999999874 368999855 7899999
Q ss_pred HHHHHHHHHHHh
Q psy14484 417 MTSAIFQTFNEV 428 (430)
Q Consensus 417 ~~~~l~~~l~~~ 428 (430)
++++|+++++++
T Consensus 349 l~~~l~~~~~~~ 360 (364)
T 1lc5_A 349 LLAALRNVLTGI 360 (364)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHHhhcc
Confidence 999998887653
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=247.64 Aligned_cols=323 Identities=16% Similarity=0.092 Sum_probs=230.1
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~ 108 (430)
+|++++||.++. ..+|+ +|++.+++.+++..... +.......++.+.+++.+.+..+ .+++++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 478899998884 46776 79999999998865321 11112334566677777665443 46689999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++++.. ++++|++.+++||++.......+ .....++ . |+
T Consensus 104 ~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~-~-----------------d~ 144 (370)
T 2z61_A 104 FALSSIID--------DGDEVLIQNPCYPCYKNFIRFLG-------------AKPVFCD-F-----------------TV 144 (370)
T ss_dssp HHHHHHCC--------TTCEEEEESSCCTHHHHHHHHTT-------------CEEEEEC-S-----------------SH
T ss_pred HHHHHhcC--------CCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeC-C-----------------CH
Confidence 99998753 56889999999998754433221 1223333 1 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC-CC-CCc-
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EI-WPD- 265 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~-~~-~~d- 265 (430)
++|+++++ +++++|++++ ++|++|.+.+ ++ |.++|++||+++|+||+|+++.+.|....+..+ +. ..|
T Consensus 145 ~~l~~~l~---~~~~~v~~~~-p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i 215 (370)
T 2z61_A 145 ESLEEALS---DKTKAIIINS-PSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTI 215 (370)
T ss_dssp HHHHHHCC---SSEEEEEEES-SCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEE
T ss_pred HHHHHhcc---cCceEEEEcC-CCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEE
Confidence 99998885 4678888888 8889997776 55 999999999999999999987665543222222 11 223
Q ss_pred -eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-Hh--hcCHHHHHHHHHHH
Q psy14484 266 -FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FN--KDNILQRISQDMKK 340 (430)
Q Consensus 266 -~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-~~--~~~~~~~~~~~~~~ 340 (430)
+.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+. .+ .++..++++++.++
T Consensus 216 ~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (370)
T 2z61_A 216 LINGFSKLYAMTG-WRIGYVISNDEIIEAILK------LQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRL 288 (370)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhccCCcc-ceEEEEEECHHHHHHHHH------HHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 447899997 56 799999999998887765 33445667888988888888764 22 13456667778888
Q ss_pred HHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCCCH
Q psy14484 341 ITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYILNK 411 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~t~ 411 (430)
+.+.|+++ .... ..+. |.++++.+. . . +.++.+.|. ++||.+.++ .+++|++++ +++
T Consensus 289 l~~~L~~~-g~~~---~~~~~~~~~~~~~~-~----~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~--~~~ 354 (370)
T 2z61_A 289 VLKYVKDF-GWEV---NNPIGAYYVFPNIG-E----D---GREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYA--NSY 354 (370)
T ss_dssp HHHHHHHT-TCBC---CCCCBTTEECCBCS-S----C---HHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECC--SCH
T ss_pred HHHHHHHc-CCee---cCCCcceEEEEecC-C----C---HHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe--CCH
Confidence 88888765 2222 2233 455555554 3 1 357888887 789999875 468999888 699
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTFN 426 (430)
Q Consensus 412 e~i~~~~~~l~~~l~ 426 (430)
+++++++++|+++++
T Consensus 355 ~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 355 ENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=250.21 Aligned_cols=336 Identities=9% Similarity=0.012 Sum_probs=232.8
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcc--ccccCCCCCHHHHHHHHHHHhhcCCC--C-CeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLSSLTQYK--L-GHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~--~-~~v~~~~sgteA 106 (430)
.|++++||.+|. ..+| .+|.+.+++.+++.... .+.......++.+.+++.+.+.++.. + ++|++++|+++|
T Consensus 45 ~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 45 GPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 577899999884 4677 68999999999875421 11111233455666666666555643 3 689999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIAR 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 185 (430)
++.+++++.. +++.|++.+++||++.......+. ....++.+. .+..
T Consensus 122 l~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~----------- 169 (404)
T 2o1b_A 122 LVAVPTCVIN--------PGDYVLLPDPGYTDYLAGVLLADG-------------KPVPLNLEPPHYLP----------- 169 (404)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCSSHHHHHHHTTC-------------EEEEEECCTTTCCC-----------
T ss_pred HHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHCCC-------------EEEEeccCcccCcC-----------
Confidence 9999998753 567899999999998654433221 223333322 1111
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-cc---CC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EH---AE 261 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~---~~ 261 (430)
|+++|+++++ +++++|+++. ++|++|.+ ++.+.+++|.++|+++|+++|+||+|+++.+.|....+ .. .+
T Consensus 170 -d~~~l~~~l~---~~~~~v~l~~-p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 243 (404)
T 2o1b_A 170 -DWSKVDSQII---DKTKLIYLTY-PNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKD 243 (404)
T ss_dssp -CGGGSCHHHH---HHEEEEEECS-SCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHH
T ss_pred -CHHHHHHhhc---cCceEEEEcC-CCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCC
Confidence 6778888885 3578888877 88888854 67889999999999999999999999988655532111 11 12
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
....+.++||.++ +| +|+|++++++++++.+.. .....+++.+++++.++.++|+..+ -+...++++++.
T Consensus 244 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 316 (404)
T 2o1b_A 244 VAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKK------YQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRR 316 (404)
T ss_dssp HEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchhccCch-hheEeEecCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2234568999997 56 799999999999887765 2344567788998888888886521 133445566677
Q ss_pred HHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+++.+.|+++ .. ....+. |.++++.+. .... +.++.+.|+ ++||.+.++ .+++|++++.
T Consensus 317 ~~l~~~L~~~-g~---~~~~~~~g~~~~~~~~-~~~~-----~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-- 384 (404)
T 2o1b_A 317 DRFEAMLAKA-DL---PFVHAKGGIYVWLETP-PGYD-----SEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-- 384 (404)
T ss_dssp HHHHHHHHHT-TC---CEECCCBSSEEEEECC-TTCC-----HHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS--
T ss_pred HHHHHHHHhc-CC---eecCCCcceEEEEeCC-CCCC-----HHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC--
Confidence 7777777664 22 223343 455666665 3211 356888877 579999874 4689998885
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
+++++++++++|++++++
T Consensus 385 ~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 385 DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CTTHHHHHHHHHHGGGGG
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 788999999999988764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=248.67 Aligned_cols=339 Identities=14% Similarity=0.063 Sum_probs=229.5
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.+|+++|||.+|. ..++. +|+|++++.+++...... ....+..++.+.+++.+.+.++ .++++|++|+||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTGA-PRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSCS-CHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 4789999999984 45553 889999999988653211 1112234566667777666544 5678999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.+++.++. +++.|++.+++|+++.......+ .....++.+...... .|
T Consensus 105 ~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------~d 153 (391)
T 3h14_A 105 LLAFTALFD--------SGDRVGIGAPGYPSYRQILRALG-------------LVPVDLPTAPENRLQ----------PV 153 (391)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEECCGGGTTS----------CC
T ss_pred HHHHHHhcC--------CCCEEEEcCCCCccHHHHHHHcC-------------CEEEEeecCcccCCC----------CC
Confidence 999998754 56889999999998754333221 222344433211000 16
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCce
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDF 266 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d~ 266 (430)
+++|++. ++++|+++. ++|++|. ..+.+.+++|.++|++||+++|+||+|+++.+.+.... .+..+....+
T Consensus 154 ~~~l~~~------~~~~v~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~ 225 (391)
T 3h14_A 154 PADFAGL------DLAGLMVAS-PANPTGT-MLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVI 225 (391)
T ss_dssp HHHHTTS------CCSEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEE
T ss_pred HHHHHhc------CCeEEEECC-CCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEE
Confidence 6776654 466677777 8888885 55677799999999999999999999998876664322 2221222334
Q ss_pred eeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHH
Q psy14484 267 LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKA 344 (430)
Q Consensus 267 ~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~ 344 (430)
.++||.++ .| +|+|++++++++.+.+.. .....+++.+++++.++.++|+..+ -+...++++++.+++.+.
T Consensus 226 ~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 298 (391)
T 3h14_A 226 NSFSKYFSMTG-WRVGWMVVPEDQVRVVER------IAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLER 298 (391)
T ss_dssp EESSSTTCCTT-SCCEEEECCGGGHHHHHH------HHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCcc-ceeEEEEeCHHHHHHHHH------HHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 47899997 57 799999999998887765 3345677888888888878776111 133445666667777777
Q ss_pred HHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec--------CCEEEEeCCCCCCHHHH
Q psy14484 345 LTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI--------GNTVYLMPPYILNKNEI 414 (430)
Q Consensus 345 l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~--------~~~lR~~~~~~~t~e~i 414 (430)
|+++ +......+.| .++++.+. .... . +.++++.|+++ ||.+.++ .+++|++++. +++++
T Consensus 299 l~~~---~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~--~~~~i 368 (391)
T 3h14_A 299 LPKA---GFTRIAPPDGAFYVYADVS-DLTD-D---SRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR--ATADI 368 (391)
T ss_dssp HHHH---TCCCBCCCCBTTEEEEECT-TTCS-C---HHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS--CHHHH
T ss_pred HHHc---CCCcccCCCeeEEEEEecC-ccCC-C---HHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC--CHHHH
Confidence 7655 3222233444 55555554 3111 1 36788888776 9999874 3589998775 88999
Q ss_pred HHHHHHHHHHHHHh
Q psy14484 415 QHMTSAIFQTFNEV 428 (430)
Q Consensus 415 ~~~~~~l~~~l~~~ 428 (430)
++++++|++++.+.
T Consensus 369 ~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 369 EEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998753
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=249.29 Aligned_cols=345 Identities=12% Similarity=0.069 Sum_probs=236.5
Q ss_pred CCCCEEEecccccccc-cCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC-----CCCCeEEEcCCch
Q psy14484 31 VSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ-----YKLGHCFYGSDGA 104 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~v~~~~sgt 104 (430)
.+|+.++||..|.... .-...+|+|++++.+++...... .+.+.....++++.+++.++ ..+++|++|+||+
T Consensus 51 ~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t 128 (427)
T 3dyd_A 51 NPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCS 128 (427)
T ss_dssp CTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHH
T ss_pred cCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcH
Confidence 4578899999885321 11246899999999988763211 11222334466666666654 4678999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANE 182 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 182 (430)
+|++.+++.++. +++.|++..++|+++.......+. ++..+++.. .+..
T Consensus 129 ~al~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~-------- 179 (427)
T 3dyd_A 129 QAIDLCLAVLAN--------PGQNILVPRPGFSLYKTLAESMGI-------------EVKLYNLLPEKSWEI-------- 179 (427)
T ss_dssp HHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTEE--------
T ss_pred HHHHHHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcCC-------------EEEEEecccccCCCC--------
Confidence 999999998864 568899999999987554433222 222333211 1111
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE 261 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~ 261 (430)
|+++|++.++ .+++++++.. ++|++| ..++++.+++|.++|+++|+++|+||+|++|++.|..+ .....+
T Consensus 180 ----d~~~l~~~l~---~~~~~v~i~~-p~nptG-~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 180 ----DLKQLEYLID---EKTACLIVNN-PSNPCG-SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp ----CHHHHHSSCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC
T ss_pred ----CHHHHHHHhc---cCCCEEEEEC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC
Confidence 7888888875 4577777777 788888 56788889999999999999999999999998776532 344445
Q ss_pred CCCcee---eeecccCCCccccEEEEEc-------HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---c
Q psy14484 262 IWPDFL---CLSKGITGGYLPLSLVMTT-------DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---D 328 (430)
Q Consensus 262 ~~~d~~---~~sK~l~gG~~~ig~~~~~-------~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~ 328 (430)
..++++ +|||.++..++|+|+++++ +++.+.+.. . ...++++++++++++.++|+.... +
T Consensus 251 ~~~~vi~~~S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~------~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~ 323 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK------L-SQRILGPCTIVQGALKSILCRTPGEFYH 323 (427)
T ss_dssp SSCCEEEEEESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH------H-HHHHCCSCHHHHHHHHHHHHHSCHHHHH
T ss_pred CCCcEEEEeeccccCCCcCcceEEEEecCcchhhHHHHHHHHHH------H-HhccCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 455555 8999876533899999997 466666654 1 223577889999988888874211 3
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTV 401 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~l 401 (430)
+..++++++.+++.+.|+++ +++....+ .|+++++.+. ...........++++.|+ ++||++.++ .+++
T Consensus 324 ~~~~~~~~~~~~l~~~L~~~---~g~~~~~p~~g~~~~~~l~-~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~i 399 (427)
T 3dyd_A 324 NTLSFLKSNADLCYGALAAI---PGLRPVRPSGAMYLMVGIE-MEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFI 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---TTEEEECCSBTTEEEEEEC-GGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCceecCCCeeEEEEEecC-HhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeE
Confidence 34556666677777777654 55544434 4556665654 221100001356888875 789999886 3789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|+++. +++++|++++++|++++++.
T Consensus 400 Ris~~--~~~e~i~~~l~~l~~~l~~~ 424 (427)
T 3dyd_A 400 RVVIT--VPEVMMLEACSRIQEFCEQH 424 (427)
T ss_dssp EEESC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEC--CCHHHHHHHHHHHHHHHHHh
Confidence 99865 79999999999999998764
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=245.01 Aligned_cols=333 Identities=13% Similarity=0.139 Sum_probs=234.9
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhc-----cccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-----EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgte 105 (430)
++.++||.++ ...+ ..+|++.+++.+++... ..+....+..++++++++.+.+.++ .++++|++++||++
T Consensus 34 ~~~~i~l~~~--~~~~-~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIG--NPSI-PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSC--CCCS-CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecC--CCCC-CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 4679999987 2333 37899999999998763 1122222334667778888777665 46789999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCC-cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNK-KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~-~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 183 (430)
|++.+++++.. ++ +.|++.+++|+++.......+ .....++.+.. +..
T Consensus 111 al~~~~~~l~~--------~g~d~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~--------- 160 (398)
T 3ele_A 111 SLSICFRALTS--------DAYDEFITIAPYFPEYKVFVNAAG-------------ARLVEVPADTEHFQI--------- 160 (398)
T ss_dssp HHHHHHHHHCC--------STTCEEEEESSCCTHHHHHHHHTT-------------CEEEEECCCTTTSSC---------
T ss_pred HHHHHHHHHcC--------CCCCEEEEeCCCchhhHHHHHHcC-------------CEEEEEecCCcCCcC---------
Confidence 99999998854 45 899999999998754433322 22334444321 122
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh------cCCEEEEeccccCCCCcccccc-
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN------YNIHLIADEIAVGCGRTGKFFA- 256 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~------~gi~li~DEv~~g~g~~g~~~~- 256 (430)
|+++|+++++ +++++++++. ++|++|. ..+.+.+++|.++|++ ||+++|+||+|+++.+.|....
T Consensus 161 ---d~~~l~~~l~---~~~~~v~~~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~ 232 (398)
T 3ele_A 161 ---DFDALEERIN---AHTRGVIINS-PNNPSGT-VYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPF 232 (398)
T ss_dssp ---CHHHHHHTCC---TTEEEEEECS-SCTTTCC-CCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCC
T ss_pred ---CHHHHHHHhC---cCCCEEEEcC-CCCCCCC-CCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCC
Confidence 7899998885 4688888887 8899995 5567779999999999 9999999999998876664222
Q ss_pred -cccCCCCCceeeeecccC-CCccccEEEEEcHHHHH------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 257 -CEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 257 -~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~------~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
.+..+....+.++||.++ .| +|+|++++++++.+ .+.. ......+++.+++++.++.+.++ ..
T Consensus 233 ~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~~l~---~~ 303 (398)
T 3ele_A 233 VTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCG-----AGRALGYVCAPSLFQKMIVKCQG---AT 303 (398)
T ss_dssp GGGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHH-----HHHHTTCCCSCHHHHHHHTTCTT---CC
T ss_pred hHhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHH-----HhhhccccCCCHHHHHHHHHHhc---CH
Confidence 233333344558999998 67 79999999987433 2221 01122356667777766655553 44
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEE
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVY 402 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR 402 (430)
...++++++.+++.+.|+++ .. ....+.| .++++.+. .. . +..+++.|.++||.+.++ .+++|
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~-g~---~~~~~~~~~~~~~~~~-~~---~---~~~~~~~l~~~gi~v~~g~~~~~~~~iR 372 (398)
T 3ele_A 304 GDINAYKENRDLLYEGLTRI-GY---HCFKPDGAFYMFVKAL-ED---D---SNAFCEKAKEEDVLIVAADGFGCPGWVR 372 (398)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-TC---CEECCSBSSEEEEECS-SS---C---HHHHHHHHHTTTEECEESGGGTCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHc-CC---eecCCCeeEEEEEEcC-CC---C---HHHHHHHHHHCCEEEeCccccCCCCeEE
Confidence 56788888999999999876 22 2233344 44666654 31 1 367888999999999885 37899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++ +++++|++++++|+++++++
T Consensus 373 is~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 373 ISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp EECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EEec--CCHHHHHHHHHHHHHHHHHh
Confidence 9875 79999999999999998764
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=247.05 Aligned_cols=333 Identities=14% Similarity=0.113 Sum_probs=233.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcCC--CCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQY--KLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgteA~~ 108 (430)
.|++++||.++. ..++. +|.+.+++.+++...... .......++.+.+++.+.+.++. +++++++++||++|++
T Consensus 39 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 578899998884 45674 799999999988653211 11122345666677766655443 5679999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARC 186 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (430)
.+++++.. +++.|++.+++|+++.......+ .....++.+. .+..
T Consensus 116 ~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~------------ 162 (389)
T 1o4s_A 116 NAFMALLD--------PGDEVIVFSPVWVSYIPQIILAG-------------GTVNVVETFMSKNFQP------------ 162 (389)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCGGGTTCC------------
T ss_pred HHHHHhCC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEEecCCccCCCC------------
Confidence 99998743 56789999999998754433211 1223344331 1111
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccccc----CCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH----AEI 262 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~----~~~ 262 (430)
|+++|+++++ +++++|+++. ++|++|. .++.+.+++|.++|+++|+++|+||+|+++.+.|....... .+.
T Consensus 163 d~~~l~~~l~---~~~~~v~~~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~ 237 (389)
T 1o4s_A 163 SLEEVEGLLV---GKTKAVLINS-PNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDR 237 (389)
T ss_dssp CHHHHHHTCC---TTEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTT
T ss_pred CHHHHHHhcc---cCceEEEEcC-CCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCc
Confidence 7889988885 4678888888 8888885 56778999999999999999999999998766543222211 122
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI 341 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l 341 (430)
...+.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+.. .++..++++++.+++
T Consensus 238 ~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l 309 (389)
T 1o4s_A 238 IVYINGFSKSHSMTG-WRVGYLISSEKVATAVSK------IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFV 309 (389)
T ss_dssp EEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred EEEEeechhhcCCcc-cceEEEEeCHHHHHHHHH------HhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 222457899997 46 799999999998887765 234456777888888777776532 245567778888888
Q ss_pred HHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHHHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQ 415 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~ 415 (430)
.+.|+++ ...... +..|.++++.+. . . ..++.+.|+ ++||.+.++ ++++|++++ .++++++
T Consensus 310 ~~~L~~~-g~~~~~--~~~~~~~~~~~~-~----~---~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~--~~~~~l~ 376 (389)
T 1o4s_A 310 VERLKKM-GVKFVE--PEGAFYLFFKVR-G----D---DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLT 376 (389)
T ss_dssp HHHHHHT-TCCCCC--CSBSSEEEEECS-S----C---HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHH
T ss_pred HHHHHhc-CCeeec--CCcceEEEEeCC-C----C---HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEe--CCHHHHH
Confidence 8888775 333221 122445555442 1 1 357888887 889999876 368999887 4999999
Q ss_pred HHHHHHHHHHH
Q psy14484 416 HMTSAIFQTFN 426 (430)
Q Consensus 416 ~~~~~l~~~l~ 426 (430)
+++++|+++++
T Consensus 377 ~~l~~l~~~l~ 387 (389)
T 1o4s_A 377 EALDRIEDFLN 387 (389)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=243.52 Aligned_cols=341 Identities=13% Similarity=0.063 Sum_probs=231.4
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHH------------hhccccccCCCCCHHHHHHHHHHHhhcC----CCCCeE
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQL------------NKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YKLGHC 97 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~v 97 (430)
+.++||.++ .+++| +|.+.+++.++. .....+..+.+..++.+.+++.+.+.++ .+++++
T Consensus 36 ~~~i~l~~~--~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i 111 (428)
T 1iay_A 36 NGVIQMGLA--ENQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERV 111 (428)
T ss_dssp TSBEECSSC--CCCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSC
T ss_pred Cceeeeccc--cchhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhE
Confidence 478999876 45666 468888887532 1212222222234556666666665443 467899
Q ss_pred EEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCC
Q psy14484 98 FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNIN 175 (430)
Q Consensus 98 ~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (430)
++++|++++++.++++++. +++.|++..++||++........+ .....++.+. .+..
T Consensus 112 ~~~~G~~~ai~~~~~~~~~--------~gd~Vl~~~p~y~~~~~~~~~~~g------------~~~~~v~~~~~~~~~~- 170 (428)
T 1iay_A 112 VMAGGATGANETIIFCLAD--------PGDAFLVPSPYYPAFNRDLRWRTG------------VQLIPIHCESSNNFKI- 170 (428)
T ss_dssp EEEEHHHHHHHHHHHHHCC--------TTCEEEEESSCCTTHHHHTTTTTC------------CEEEEECCCTTTTTCC-
T ss_pred EEccChHHHHHHHHHHhCC--------CCCeEEEccCCCcchHHHHHHhcC------------CEEEEeecCCccCCcC-
Confidence 9999999999999998764 567899999999987543222222 1223343321 1111
Q ss_pred CCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc
Q psy14484 176 KGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252 (430)
Q Consensus 176 ~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g 252 (430)
|+++|++++++. ..++++|++.. ++|++|. ..+.+++++|.++|++||+++|+||+|+++.+.+
T Consensus 171 -----------d~~~l~~~l~~~~~~~~~~~~v~l~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~ 237 (428)
T 1iay_A 171 -----------TSKAVKEAYENAQKSNIKVKGLILTN-PSNPLGT-TLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT 237 (428)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS
T ss_pred -----------CHHHHHHHHHHHHhcCCceEEEEEcC-CCCCCCC-cCCHHHHHHHHHHHHHCCeEEEEeccccccccCC
Confidence 788898888752 23678777777 7788885 5688999999999999999999999999865554
Q ss_pred ccc-c---cccC----CCCCc----eeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 253 KFF-A---CEHA----EIWPD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 253 ~~~-~---~~~~----~~~~d----~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
..+ . +... ++.+| +.++||.++ .| +|+|++++ ++++++.+.. ...+++.+++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~ 308 (428)
T 1iay_A 238 PQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARK--------MSSFGLVSTQTQYFL 308 (428)
T ss_dssp SCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHH--------HHTTSCCCHHHHHHH
T ss_pred CCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHH--------HHhcccCCHHHHHHH
Confidence 321 1 1111 22366 558999997 56 79999999 6788877764 233467788888888
Q ss_pred HHHHHHHh-----hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCc-cchhHHHHHHHHHHHC-
Q psy14484 319 LATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPE-QIETFSKKFFVAALKN- 390 (430)
Q Consensus 319 ~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~-~~~~~a~~~~~~l~~~- 390 (430)
.++|+..+ .++..++++++.+++.+.|+++ ... ..++ .|+++++.+. .... .....+..+++.|+++
T Consensus 309 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~---~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~ 383 (428)
T 1iay_A 309 AAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK---CLKNNAGLFCWMDLR-PLLRESTFDSEMSLWRVIINDV 383 (428)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC---BCCCSSSSEEEEECG-GGCSSSSHHHHHHHHHHHHHTS
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc---ccCCCeeEEEEEech-hhcCCCchhHHHHHHHHHHHhC
Confidence 87775321 1345566677777787777765 222 2233 5777777776 3210 0111235788999887
Q ss_pred CcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 391 ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 391 Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
||.+.++ ++++|++++ .++++++++++++|++++++
T Consensus 384 gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 384 KLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred CEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 9999885 258999988 68999999999999998864
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=245.13 Aligned_cols=323 Identities=11% Similarity=0.102 Sum_probs=231.1
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCC-HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.++||.++. ..++ .+|.+.+++.+++.... .+.. ....++++.+++.++.+++++++++||++|++.+++.
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~ 97 (381)
T 1v2d_A 26 GAVNLGQGF--PSNP-PPPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQS 97 (381)
T ss_dssp TCEECCCCS--CSSC-CCHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHH
Confidence 478998874 4566 68999999999876521 1222 2356788888888877778999999999999999998
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC---CCCCCCCCCChhHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~ 190 (430)
+.. ++++|++.+++||++...... .+ .....++.+ ..+.. |+++
T Consensus 98 ~~~--------~gd~Vl~~~~~~~~~~~~~~~-~g------------~~~~~v~~~~~~~~~~~------------d~~~ 144 (381)
T 1v2d_A 98 LVG--------PGDEVVVLEPFFDVYLPDAFL-AG------------AKARLVRLDLTPEGFRL------------DLSA 144 (381)
T ss_dssp HCC--------TTCEEEEEESCCTTHHHHHHH-TT------------CEEEEEECEEETTEEEC------------CHHH
T ss_pred hCC--------CCCEEEEcCCCchhHHHHHHH-cC------------CEEEEEeCCCCCccCCc------------CHHH
Confidence 753 568899999999987543222 11 122334332 11111 7889
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccc--cCCCCCcee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACE--HAEIWPDFL 267 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~--~~~~~~d~~ 267 (430)
|+++++ +++++|++++ ++|++|.+ ++.+.+++|.++|++||+++|+||+|+++.. |. ...+. ..+..+++.
T Consensus 145 l~~~l~---~~~~~v~~~~-~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~ 218 (381)
T 1v2d_A 145 LEKALT---PRTRALLLNT-PMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVG 218 (381)
T ss_dssp HHTTCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEE
T ss_pred HHHhcC---cCCEEEEECC-CCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEe
Confidence 888874 4688888888 89999955 5678899999999999999999999998744 32 11111 335556677
Q ss_pred eeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--h--cCHHHHHHHHHHHHH
Q psy14484 268 CLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--K--DNILQRISQDMKKIT 342 (430)
Q Consensus 268 ~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~--~~~~~~~~~~~~~l~ 342 (430)
++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+... + ++..++++++.+++.
T Consensus 219 s~sK~~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 291 (381)
T 1v2d_A 219 SAGKRLEATG-YRVGWIVGPKEFMPRLAG------MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLA 291 (381)
T ss_dssp EHHHHTTCGG-GCCEEEECCTTTHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 8999987 46 799999999988887764 2234567788888888888887542 1 335566677777787
Q ss_pred HHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCEEEEeCCCCCCHH
Q psy14484 343 KALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILNKN 412 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~lR~~~~~~~t~e 412 (430)
+.|+++ ... ...+. |.++++.+. .. + +.+.|.++||.+.++ .+++|++++. +++
T Consensus 292 ~~L~~~-g~~---~~~~~~~~~~~~~~~-~~--------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~--~~~ 355 (381)
T 1v2d_A 292 GGLRAM-GLR---VYVPEGTYFLMAELP-GW--------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK--TEE 355 (381)
T ss_dssp HHHHHT-TCC---EECCSBSSEEEEECT-TC--------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS--CHH
T ss_pred HHHHHC-CCE---ecCCCcceEEEEecC-hH--------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC--CHH
Confidence 777764 222 22233 566666655 31 1 556678899999874 3689998875 999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
++++++++|++++++
T Consensus 356 ~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 356 ELHLALERLGRVVNS 370 (381)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=246.52 Aligned_cols=343 Identities=15% Similarity=0.082 Sum_probs=234.2
Q ss_pred CCCCEEEecccccccc-cCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhc--CCCCCeEEEcCCchHH
Q psy14484 31 VSGKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLT--QYKLGHCFYGSDGASA 106 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA 106 (430)
.+|++++||..+.... .++ .+|++.+++.+++..... +....+..+..+.+++.+.+.. +.+++++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 3678899998885432 456 579999999998865321 1111223456667777776654 3456799999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 184 (430)
++.+++++.. +++.|++.+++|+++.......+ .....++.+. .+..
T Consensus 114 l~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~---------- 162 (406)
T 1xi9_A 114 LQLIFGALLD--------PGDEILVPGPSYPPYTGLVKFYG-------------GKPVEYRTIEEEDWQP---------- 162 (406)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTT-------------CEEEEEEEEGGGTSEE----------
T ss_pred HHHHHHHhCC--------CCCEEEEcCCCCccHHHHHHHcC-------------CEEEEeecCCCcCCcC----------
Confidence 9999998743 56889999999998754433221 1222333221 1111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|+++|+++++ .++++|++++ ++|++|. .++++.+++|.++|++||+++|+||+|+++.+.+....+..++...
T Consensus 163 --d~~~l~~~l~---~~~~~v~i~~-p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 235 (406)
T 1xi9_A 163 --DIDDIRKKIT---DRTKAIAVIN-PNNPTGA-LYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDV 235 (406)
T ss_dssp --CHHHHHHHCC---TTEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSS
T ss_pred --CHHHHHHhhC---cCceEEEEEC-CCCCCCC-CcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCc
Confidence 7899998885 4688888888 8899995 4677889999999999999999999999876533322332222112
Q ss_pred -cee--eeecccC-CCccccEEEE--EcH----HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHH
Q psy14484 265 -DFL--CLSKGIT-GGYLPLSLVM--TTD----KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQ 332 (430)
Q Consensus 265 -d~~--~~sK~l~-gG~~~ig~~~--~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~ 332 (430)
+++ ++||.++ .| +|+|+++ +++ ++++.+.. ..... ++.+++++.++.++|+... .+...+
T Consensus 236 ~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~l~~~l~~------~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~ 307 (406)
T 1xi9_A 236 PVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVREAIDR------LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMK 307 (406)
T ss_dssp CEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHHHHHH------HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHH
T ss_pred eEEEEeccccccCCCc-cEEEEEEEecCchhHHHHHHHHHH------HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHH
Confidence 343 6789997 46 7999999 888 88887764 11222 6677888888888885221 133456
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEE
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYL 403 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~ 403 (430)
+++++.+++.+.|+++ +.+....+. |.++++.+. .... .. ..++.+.|+ ++||.+.++ .+++||
T Consensus 308 ~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRi 380 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEI---PGISTTKPQGAFYIFPKIE-VGPW-KN--DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRA 380 (406)
T ss_dssp HHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC-SCSC-SS--HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEE
T ss_pred HHHHHHHHHHHHHHhC---CCCeeecCCeeEEEEEecC-ccCC-CC--HHHHHHHHHHhCCEEEeCchhcCCCCCCEEEE
Confidence 6677777777777654 343333344 444444555 3100 11 357888887 889999875 468999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++ ++++++++++++|++++++++
T Consensus 381 s~~--~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 381 VFL--PPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHHHC-
T ss_pred Eec--CCHHHHHHHHHHHHHHHHHHh
Confidence 887 899999999999999998754
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=239.81 Aligned_cols=332 Identities=11% Similarity=0.070 Sum_probs=230.6
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEV 109 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~ 109 (430)
..++||.++. ..+| .+|++.+++.+++... ..+....+..++.+.+++.+.+.++ .+++ +|++++||++|++.
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~ 106 (386)
T 1u08_A 30 HQAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYA 106 (386)
T ss_dssp TTCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHH
Confidence 3589998874 3566 6899999999988652 1111112234566677777766555 4577 99999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAI 188 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 188 (430)
+++++.. +++.|++.+++||++.......+ .....++.+. .+.. |+
T Consensus 107 ~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~------------d~ 153 (386)
T 1u08_A 107 AITALVR--------NGDEVICFDPSYDSYAPAIALSG-------------GIVKRMALQPPHFRV------------DW 153 (386)
T ss_dssp HHHHHCC--------TTCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECCTTTCCC------------CH
T ss_pred HHHHhCC--------CCCEEEEeCCCchhHHHHHHHcC-------------CEEEEeecCcccCcC------------CH
Confidence 9998743 56789999999998754332211 1223444332 1112 78
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----cccc-cCCCC
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACE-HAEIW 263 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~----~~~~-~~~~~ 263 (430)
++|+++++ +++++++++. ++|++|.+ ++.+.+++|.++|++||+++|+||+|+++.+.|.. ..+. ..+..
T Consensus 154 ~~l~~~l~---~~~~~v~l~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (386)
T 1u08_A 154 QEFAALLS---ERTRLVILNT-PHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA 228 (386)
T ss_dssp HHHHHHCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred HHHHHhhc---ccCEEEEEeC-CCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcE
Confidence 99998884 5688888888 88999954 67789999999999999999999999987665531 1121 23444
Q ss_pred CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHH
Q psy14484 264 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKK 340 (430)
Q Consensus 264 ~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~ 340 (430)
..+.++||.++ .| +|+|++++++++++.+.. ..+..+++.+++++.++.++|+..+ .++..++++++.++
T Consensus 229 i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 301 (386)
T 1u08_A 229 VAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRK------VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDI 301 (386)
T ss_dssp EEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHH
T ss_pred EEEecchhhcCCcc-cceEEEEcCHHHHHHHHH------HHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 55668999998 56 799999999998887765 2334567788888888888887431 13455666667777
Q ss_pred HHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec---------CCEEEEeCCCCC
Q psy14484 341 ITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYIL 409 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~---------~~~lR~~~~~~~ 409 (430)
+.+.|+++ + +....+ .|.++++.+. ...... ..++++.|. ++||.+.++ .+++|++++ .
T Consensus 302 l~~~L~~~---g-~~~~~~~~g~~~~~~~~-~~~~~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~--~ 371 (386)
T 1u08_A 302 LVNALNES---R-LEILPCEGTYFLLVDYS-AVSTLD---DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFA--K 371 (386)
T ss_dssp HHHHTTSS---S-CEECCCCBSSEEEEECT-TTCCSC---HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECC--S
T ss_pred HHHHHHHC---C-CeecCCCceEEEEEecC-CCCCCC---HHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEc--C
Confidence 77766654 2 222223 3567777665 321001 356888776 689999864 258999876 5
Q ss_pred CHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQ 423 (430)
Q Consensus 410 t~e~i~~~~~~l~~ 423 (430)
++++|++++++|++
T Consensus 372 ~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 372 KESTLLAAAERLRQ 385 (386)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
Confidence 89999999999864
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=242.34 Aligned_cols=321 Identities=16% Similarity=0.147 Sum_probs=229.8
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
+.++||.++ .++++ .+|++++++.+++.... .++.....++++.+++.++.++++|++++||++|++.+++.
T Consensus 30 ~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~ 101 (365)
T 3get_A 30 KEVIKLASN--ENPFG-TPPKAIECLRQNANKAH-----LYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHS 101 (365)
T ss_dssp SCCEECSSC--CCTTC-SCHHHHHHHHHHGGGTT-----SCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHH
T ss_pred CceEEecCC--CCCCC-CCHHHHHHHHHHHHhhc-----cCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH
Confidence 689999987 56677 78999999999876432 22222225788888888877788999999999999999998
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+.. +++.|++.+++|+++.......+ .+...++. ++.+ .|+++|+
T Consensus 102 l~~--------~gd~vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~-------------~d~~~l~ 147 (365)
T 3get_A 102 KLN--------SKNAFLQAGVTFAMYEIYAKQCG-------------AKCYKTQSITHNL-------------DEFKKLY 147 (365)
T ss_dssp HCC--------TTCEEEECSSCCTHHHHHHHHHT-------------CEEEECSSSSCCH-------------HHHHHHH
T ss_pred HhC--------CCCEEEEeCCChHHHHHHHHHcC-------------CEEEEEecCCCCC-------------CCHHHHH
Confidence 754 56889999999987644333211 22334443 2211 2889999
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC--cc-ccc-cc---ccCCCCCc
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TG-KFF-AC---EHAEIWPD 265 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~--~g-~~~-~~---~~~~~~~d 265 (430)
++++ +++++|+++. ++|++|.+. +.+.+++|.++| ++|+++|+||+|+++.+ .+ ... .. ...+....
T Consensus 148 ~~l~---~~~~~v~~~~-p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (365)
T 3get_A 148 ETHK---DEIKLIFLCL-PNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLY 221 (365)
T ss_dssp HHTT---TTEEEEEEES-SCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEE
T ss_pred HHhC---CCCCEEEEcC-CCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEE
Confidence 9885 5788888887 888888554 556677777777 57999999999996642 22 111 11 12232234
Q ss_pred eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHH
Q psy14484 266 FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITK 343 (430)
Q Consensus 266 ~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~ 343 (430)
+.++||.++ .| +++|++++++++.+.+.. ...+++.+++++.++.++|+..+ -+...++++++.+++.+
T Consensus 222 ~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (365)
T 3get_A 222 LGTFSKLYGLGG-LRIGYGIANANIISAFYK--------LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKE 292 (365)
T ss_dssp EEESSSTTSCTT-TCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecchHhcCcc-hheEEEEcCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 458999997 46 799999999999888875 33456788888888888876321 13345566667777777
Q ss_pred HHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 344 ALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
.|+++ ++...++.|.++++.+. .. . +.++.+.|.++||.+.++ .+++|++++ ++++++++++
T Consensus 293 ~l~~~----g~~~~~~~~~~~~~~~~-~~---~---~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~ 358 (365)
T 3get_A 293 FAKKH----NIKIIDSYTNFITYFFD-EK---N---STDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFT 358 (365)
T ss_dssp HHHHT----TCEECCCSSSEEEEECS-SS---C---HHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHH
T ss_pred HHHhC----CCEECCCCCeEEEEECC-CC---C---HHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHH
Confidence 77654 22334567888777776 42 1 467999999999999986 389999876 8999999999
Q ss_pred HHHHHH
Q psy14484 420 AIFQTF 425 (430)
Q Consensus 420 ~l~~~l 425 (430)
+|++++
T Consensus 359 ~l~~~l 364 (365)
T 3get_A 359 EFDKIL 364 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-33 Score=268.85 Aligned_cols=355 Identities=11% Similarity=0.085 Sum_probs=236.2
Q ss_pred eeEEeecCCceeEEEECCCC--EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC-
Q psy14484 15 LVIRSLKNSWKWSLIDVSGK--RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ- 91 (430)
Q Consensus 15 ~~~~~~~~~~~~~~~d~~g~--~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~- 91 (430)
.+.++++|+ ++||.+|+ .++||..+. ..++ .+|++++++.+++......+... ..++.+++++.+.+.++
T Consensus 13 ~~~~~~~g~---~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~-~~~l~~~la~~l~~~~g~ 85 (392)
T 3b1d_A 13 APNRLSHHT---YKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLVYGYTYA-SDELLQAVLDWEKSEHQY 85 (392)
Confidence 455666665 79999999 999998773 3555 58899999999886532211111 33455566666655544
Q ss_pred -CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 92 -YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 -~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
.++++|++++||++|++.+++++.. ++++|++..++||++.......+. ....++.+.
T Consensus 86 ~~~~~~v~~~~g~~~a~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~ 144 (392)
T 3b1d_A 86 SFDKEDIVFVEGVVPAISIAIQAFTK--------EGEAVLINSPVYPPFARSVRLNNR-------------KLVSNSLKE 144 (392)
Confidence 4678999999999999999998864 567899999999998544332211 112222210
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
... .+ ..|+++|++.+++ .++++++++. ++|++|. .++.+++++|.++|++||+++|+||+|+++.+
T Consensus 145 ~~g--------~~-~~d~~~l~~~l~~--~~~~~v~~~~-~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 211 (392)
T 3b1d_A 145 ENG--------LF-QIDFEQLENDIVE--NDVKLYLLCN-PHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTL 211 (392)
Confidence 000 00 0278888888863 3567777777 8888885 46677899999999999999999999998876
Q ss_pred ccc----cccccc--CCCCCceeeeecccC-CCccccEEEEEcH-HHHHhhhccCCcccccccCCC-CCCHHHHHHHHHH
Q psy14484 251 TGK----FFACEH--AEIWPDFLCLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSY-SGNPLACCAALAT 321 (430)
Q Consensus 251 ~g~----~~~~~~--~~~~~d~~~~sK~l~-gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~~~ 321 (430)
.|. .+.+.. .+..+++.++||.++ +| +|+|++++++ ++++.+.. .....++ +.++++++++.++
T Consensus 212 ~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~ 284 (392)
T 3b1d_A 212 FGHEHVSFNTVSPDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKH------QQLVNNHHEVSSLGYIATETA 284 (392)
Confidence 653 122221 344466779999998 57 7999999875 48777665 1222222 4577888888888
Q ss_pred HHHHhh--cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE-EEEeecCCccchhHHHHHHHHHH-HCCcEEeec
Q psy14484 322 LEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI 397 (430)
Q Consensus 322 l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~ 397 (430)
|+..++ ++..++++++.+++.+.|++ ..+.+...++.|.++. +++. .... . +..+++.|+ ++||.+.++
T Consensus 285 l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~~i~~~-~~~~-~---~~~l~~~l~~~~gi~v~~g 357 (392)
T 3b1d_A 285 YRYGKPWLVALKAVLEENIQFAVEYFAQ--EAPRLKVMKPQGTYLIWLDFS-DYGL-T---DDALFTLLHDQAKVILNRG 357 (392)
Confidence 763211 23334445555555555543 1344444566677665 5655 3111 1 356888886 789999874
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 -------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 -------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+++|++++ .++++|++++++|+++++
T Consensus 358 ~~f~~~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 358 SDYGSEGELHARLNIA--APKSLVEEICKRIVCCLP 391 (392)
Confidence 257888654 578999999999998875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=242.08 Aligned_cols=314 Identities=11% Similarity=0.110 Sum_probs=221.5
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
.++++||.+| .+++|+. |.+ + +.. ...|+.....++++.+++.++.++++|++++|++++++.+++
T Consensus 28 ~~~~i~l~~~--~~~~~~~-~~v--a----~~~-----~~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~ 93 (356)
T 1fg7_A 28 GNGDVWLNAN--EYPTAVE-FQL--T----QQT-----LNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIR 93 (356)
T ss_dssp TTCSEECSSC--CCSSCCC-CCC--C----CCC-----TTSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHH
T ss_pred CCceEEeeCC--CCCCCCC-HhH--h----hhh-----hccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHH
Confidence 3578999988 6789974 555 2 111 113333335688888888888778899999999999999999
Q ss_pred HHHHhhhhcCCCCC-cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNK-KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 113 ~~~~~~~~~g~~~~-~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+++. ++ ++|++.+++||++.......+. ....++.+.++.. |++++
T Consensus 94 ~~~~--------~g~d~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~------------d~~~l 140 (356)
T 1fg7_A 94 AFCE--------PGKDAILYCPPTYGMYSVSAETIGV-------------ECRTVPTLDNWQL------------DLQGI 140 (356)
T ss_dssp HHCC--------TTTCEEEECSSSCTHHHHHHHHHTC-------------EEEECCCCTTSCC------------CHHHH
T ss_pred HHhC--------CCCCEEEEeCCChHHHHHHHHHcCC-------------EEEEeeCCCCCCC------------CHHHH
Confidence 8753 34 8899999999987654433221 2233333322222 78888
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-ccCCCCCceeeee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EHAEIWPDFLCLS 270 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~~~~~~d~~~~s 270 (430)
+++++ ++++++++. ++|++|.+ .+.+.+++|.++|+ +|+++|+||+|++++...+...+ +..+....+.++|
T Consensus 141 ~~~i~----~~~~v~l~~-p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~s 213 (356)
T 1fg7_A 141 SDKLD----GVKVVYVCS-PNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLS 213 (356)
T ss_dssp HTSCT----TEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESS
T ss_pred HHHhc----CCCEEEEeC-CCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecch
Confidence 87763 577888877 88999954 67888999999999 99999999999987632222222 2222223455899
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHH
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALT 346 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~ 346 (430)
|.++ .| +|+|++++++++++.+.. ...+++.+++++.++.++|+... .+...++++++.+++.+.|+
T Consensus 214 K~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~ 284 (356)
T 1fg7_A 214 KAFALAG-LRCGFTLANEEVINLLMK--------VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALK 284 (356)
T ss_dssp STTCCGG-GCCEEEEECHHHHHHHHH--------HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCch-hhhEEEEeCHHHHHHHHH--------hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 56 799999999999888775 33456788998888888876422 23344566667777777776
Q ss_pred chhcCCCe-eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-c-----CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 347 SLITHPKI-INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-I-----GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 347 ~l~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-~-----~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
++ +.+ ...+..|.++++.+. + +.++.+.|.++||.+.+ + .+++|++++ ++++++++++
T Consensus 285 ~~---~~~~~~~~~~~~~~~~~~~-~--------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~---~~~e~~~~~~ 349 (356)
T 1fg7_A 285 EI---PCVEQVFDSETNYILARFK-A--------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVID 349 (356)
T ss_dssp HS---TTEEEECCCSSSEEEEEET-T--------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHH
T ss_pred hC---CCceEECCCCCeEEEEECC-C--------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC---CHHHHHHHHH
Confidence 54 322 233556777776654 2 35788999999999998 3 258999876 7899999999
Q ss_pred HHHHH
Q psy14484 420 AIFQT 424 (430)
Q Consensus 420 ~l~~~ 424 (430)
+|+++
T Consensus 350 ~l~~~ 354 (356)
T 1fg7_A 350 ALRAE 354 (356)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 98753
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=240.88 Aligned_cols=351 Identities=12% Similarity=0.104 Sum_probs=233.7
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc---ccccCCCCCHHHHHHHHHHHhhcCC--CC-CeEEEcCCchHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVMLSNLTHKPVIKLSEKLSSLTQY--KL-GHCFYGSDGASA 106 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~--~~-~~v~~~~sgteA 106 (430)
+..+|||..|. ..++ .+|++++++.+++.... .+.......++++.+++.+.+.++. .+ ++|++++||++|
T Consensus 27 ~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a 103 (422)
T 3fvs_A 27 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 103 (422)
T ss_dssp TSCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred cCCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHH
Confidence 45788988874 3444 68999999999987632 1122223346677788887776653 34 589999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC--CCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR--NINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 184 (430)
++.+++.+.. +++.|++.+++||++.......+. ....++.+... .+. ......+
T Consensus 104 ~~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~G~-~~~~~~~- 160 (422)
T 3fvs_A 104 LFTAFQALVD--------EGDEVIIIEPFFDCYEPMTMMAGG-------------RPVFVSLKPGPIQNGE-LGSSSNW- 160 (422)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECBCCCCCSSS-CCBGGGS-
T ss_pred HHHHHHHHcC--------CCCEEEEcCCCchhhHHHHHHcCC-------------EEEEEecccccccccc-cccccCC-
Confidence 9999998754 667899999999997544333222 12233332100 000 0000000
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-cccccC---
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEHA--- 260 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~~--- 260 (430)
..|+++|+++++ +++++|+++. ++|++|.+ ++++.+++|.++|++||+++|+||+|+++.+.|.. ..+...
T Consensus 161 ~~d~~~l~~~~~---~~~~~v~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 235 (422)
T 3fvs_A 161 QLDPMELAGKFT---SRTKALVLNT-PNNPLGKV-FSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM 235 (422)
T ss_dssp BCCHHHHHTTCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT
T ss_pred CCCHHHHHhhcC---CCceEEEECC-CCCCCCcC-CCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccc
Confidence 017888888875 4688888888 89999955 57888999999999999999999999988776642 222222
Q ss_pred -CCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hhcC----
Q psy14484 261 -EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NKDN---- 329 (430)
Q Consensus 261 -~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-----~~~~---- 329 (430)
+....+.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+.. ..++
T Consensus 236 ~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 308 (422)
T 3fvs_A 236 WERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQ 308 (422)
T ss_dssp GGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHH
T ss_pred cCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHH------HHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHH
Confidence 22244557899997 56 799999999999887765 345567888999998888888741 1123
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHH-HCCcEEeec---
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAAL-KNELLLRPI--- 397 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~-~~Gv~~~~~--- 397 (430)
..++++++.+++.+.|+++ +.....+..|.++++.+. .... .......++++.++ ++||.+.++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f 384 (422)
T 3fvs_A 309 FPQAMQRCRDHMIRSLQSV---GLKPIIPQGSYFLITDIS-DFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 384 (422)
T ss_dssp HHHHHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECH-HHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHHHHc---CCeecCCCeeeEEEEech-hhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHh
Confidence 3455566666666666654 222123445666666654 2100 00000246777755 569998873
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++||+++ .++++|++++++|++++++
T Consensus 385 ~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 385 YSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp SCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHHHC
T ss_pred cCCcCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 368999765 4999999999999998875
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=242.24 Aligned_cols=352 Identities=12% Similarity=0.024 Sum_probs=230.4
Q ss_pred EEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-------------cccCCCCCHHHHHHHHHHHhhcC---
Q psy14484 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-------------VMLSNLTHKPVIKLSEKLSSLTQ--- 91 (430)
Q Consensus 28 ~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~--- 91 (430)
.||.+++.+.++..|...+.++ +|.+.+++.++.....+ +....+..++.+.+++.+.+..+
T Consensus 30 ~y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~ 107 (435)
T 3piu_A 30 PYHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKV 107 (435)
T ss_dssp BCBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCC
Confidence 3677777666655665566665 67777777765443211 11111223445555555554322
Q ss_pred -CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 92 -YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 92 -~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
..++++++++||++|++.++++++. +++.|++.+++|+++........+ .+...++.+.
T Consensus 108 ~~~~~~v~~~~gg~~a~~~~~~~l~~--------~gd~vl~~~p~~~~~~~~~~~~~g------------~~~~~~~~~~ 167 (435)
T 3piu_A 108 TFDPNHLVLTAGATSANETFIFCLAD--------PGEAVLIPTPYYPGFDRDLKWRTG------------VEIVPIHCTS 167 (435)
T ss_dssp CCCGGGEEEEEHHHHHHHHHHHHHCC--------TTCEEEEEESCCTTHHHHTTTTTC------------CEEEEEECCG
T ss_pred CCCHHHEEEcCChHHHHHHHHHHhcC--------CCCeEEECCCccccHHHHHHHhcC------------CEEEEeeCCC
Confidence 4578999999999999999998864 568899999999887543321222 1223333321
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
..... .|+++|+++++++ ..++++|++++ ++|++|. .++.+.+++|.++|++||+++|+||+|++
T Consensus 168 ~~~~~----------~d~~~l~~~l~~~~~~~~~~~~v~i~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~ 235 (435)
T 3piu_A 168 SNGFQ----------ITETALEEAYQEAEKRNLRVKGVLVTN-PSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSG 235 (435)
T ss_dssp GGTSC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGG
T ss_pred ccCCc----------CCHHHHHHHHHHHHhcCCCeEEEEEcC-CCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccc
Confidence 11000 1788999988753 23688888888 8888885 56677899999999999999999999998
Q ss_pred CCCcccccc-cccC----CCC-----Cc----eeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCC
Q psy14484 248 CGRTGKFFA-CEHA----EIW-----PD----FLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGN 311 (430)
Q Consensus 248 ~g~~g~~~~-~~~~----~~~-----~d----~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~ 311 (430)
+.+.+..+. .... ++. +| +.+|||+++ +| +|+|++++ ++.+.+.+.. +..++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~--------~~~~~~~~ 306 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATK--------MSSFGLVS 306 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHH--------HGGGSCCC
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHH--------HhhcCCCC
Confidence 666554322 1111 111 33 558999998 57 79999999 5667666654 34455667
Q ss_pred HHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccc-hhHHHHHH
Q psy14484 312 PLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQI-ETFSKKFF 384 (430)
Q Consensus 312 ~~~~~aa~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~a~~~~ 384 (430)
++++.++.++++..+ .++..++++++.+++.+.|+++ ++....+.+ .++++.+. ...... ...+.+++
T Consensus 307 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~~~~~l~-~~~~~~~~~~~~~~~ 381 (435)
T 3piu_A 307 SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS----GISCLNGNAGLFCWVDMR-HLLRSNTFEAEMELW 381 (435)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCEECCCCSSSEEEEECG-GGSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccCCCeeEEEEEEcc-cccccCCchhHHHHH
Confidence 887777777765221 1234455666666777777654 222334444 77777776 421111 11135788
Q ss_pred HHHHHC-CcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 385 VAALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 385 ~~l~~~-Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.|+++ ||.+.++ .+++||+++.. ++++|++++++|+++++++
T Consensus 382 ~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~ 432 (435)
T 3piu_A 382 KKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVGEY 432 (435)
T ss_dssp HHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHH
Confidence 888877 9999874 37899998655 9999999999999998865
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=244.51 Aligned_cols=336 Identities=10% Similarity=0.018 Sum_probs=230.7
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhc-cccccCCCCCHHHHHHHHHHHhhcC--CCCC-eEEEcCCchHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVMLSNLTHKPVIKLSEKLSSLTQ--YKLG-HCFYGSDGASAVEVA 110 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~-~v~~~~sgteA~~~a 110 (430)
.++||.++. ..++ .+|.+.+++.+++... ..+....+..++.+.+++.+.+.++ .+++ +|++++||++|++.+
T Consensus 26 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~ 102 (411)
T 2o0r_A 26 GAVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAA 102 (411)
T ss_dssp TCEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHH
T ss_pred CeeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHH
Confidence 478998874 4566 6899999999998762 1111112234566777777776655 4567 999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC---CCCCCCCChhHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEIARCA 187 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d 187 (430)
++++.. +++.|++.+++||++....... + .....++.+.. +. .|
T Consensus 103 ~~~~~~--------~gd~Vl~~~~~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~------------~d 149 (411)
T 2o0r_A 103 VLGLVE--------PGSEVLLIEPFYDSYSPVVAMA-G------------AHRVTVPLVPDGRGFA------------LD 149 (411)
T ss_dssp HHHHCC--------TTCEEEEEESCCTTHHHHHHHT-T------------CEEEEEECEEETTEEE------------CC
T ss_pred HHHhcC--------CCCEEEEeCCCcHhHHHHHHHc-C------------CEEEEeeccccccCCC------------CC
Confidence 998753 5688999999999875433221 1 12233333211 11 17
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-ccccc----CCC
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-FACEH----AEI 262 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~~~~~----~~~ 262 (430)
+++|+++++ +++++|++++ ++|++|. .++.+++++|.++|++||+++|+||+|+++.+.|.. ..+.. .+.
T Consensus 150 ~~~l~~~l~---~~~~~v~l~~-~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 224 (411)
T 2o0r_A 150 ADALRRAVT---PRTRALIINS-PHNPTGA-VLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAER 224 (411)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred HHHHHHhhc---cCceEEEEeC-CCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCC
Confidence 899998885 4688888888 8899995 467889999999999999999999999988765532 12211 222
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
...+.++||.++ .| +|+|++++++++++.+.. .....+++.++++++++.++|+..+ -+...++++++.+
T Consensus 225 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (411)
T 2o0r_A 225 TITISSAAKMFNCTG-WKIGWACGPAELIAGVRA------AKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD 297 (411)
T ss_dssp EEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHH------HHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHH------HHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 334557899998 56 799999999998887765 2233466677777777777776421 1345566777777
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec------------------CCE
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI------------------GNT 400 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~------------------~~~ 400 (430)
++.+.|+++ .... ..+..|.++++.+. ...... ..++.+.|+ ++||.+.++ .++
T Consensus 298 ~l~~~L~~~-g~~~--~~~~~g~~~~~~~~-~~~~~~---~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 298 RLAAGLTEI-GFAV--HDSYGTYFLCADPR-PLGYDD---STEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHHH-TCEE--CCCCBSSEEEEECG-GGTCCC---HHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHHc-CCEe--cCCCeeEEEEEecC-CCCCCC---HHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 787777765 2211 11233557777776 311001 356888876 679998763 246
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+||+++ .+++++++++++|++++++
T Consensus 371 iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 371 VRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp EEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred EEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 999875 4899999999999887653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=239.48 Aligned_cols=324 Identities=13% Similarity=0.102 Sum_probs=227.5
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
.+|+.++||.++ .+.++ .+|+|++++.+++...... ...++.....++++.+++.++.++++|++++||++|++.+
T Consensus 23 ~~~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~~~-~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~ 98 (360)
T 3hdo_A 23 PDIASWIKLNTN--ENPYP-PSPEVVKAILEELGPDGAA-LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNL 98 (360)
T ss_dssp SCCTTSEECSSC--CCSSC-CCHHHHHHHHHHHTTTCGG-GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred ccccceeeccCC--CCCCC-CCHHHHHHHHHHHhcccch-hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence 477889999988 45565 6899999999998763111 1123333346788888888877788999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++.. +++.|++.+++|+++.......+ .....++.+..+ ++++
T Consensus 99 ~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~--------------~~~~ 143 (360)
T 3hdo_A 99 IRAFAA--------EGEEIGYVHPSYSYYGTLAEVQG-------------ARVRTFGLTGDF--------------RIAG 143 (360)
T ss_dssp HHHHCC--------TTCEEEEESSSCTHHHHHHHHHT-------------CEEEEECBCTTS--------------SBTT
T ss_pred HHHHhC--------CCCEEEEcCCChHHHHHHHHHCC-------------CEEEEeeCCCCC--------------CHHH
Confidence 998754 56889999999998754433322 222344433211 1222
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s 270 (430)
++ +.. ++++++++. ++|++|.+.+ ++++.++|+++|+++|+||+|++|...+.....+..+....+.++|
T Consensus 144 l~---~~~--~~~~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~s 213 (360)
T 3hdo_A 144 FP---ERY--EGKVFFLTT-PNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLS 213 (360)
T ss_dssp CC---SSB--CSSEEEEES-SCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEEST
T ss_pred HH---hhc--CCCEEEEeC-CCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecch
Confidence 21 111 233666777 7888998887 8899999999999999999999774332211122233334456899
Q ss_pred cccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHch
Q psy14484 271 KGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 271 K~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l 348 (430)
|.++ +| +++|++++++++++.+.. ...+++.++++++++.++|+..+ -++..++++++.+++.+.|+++
T Consensus 214 K~~g~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (360)
T 3hdo_A 214 KSYSLAG-MRIGLAIARPEVIAALDK--------IRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI 284 (360)
T ss_dssp TTTSCTT-SCCEEEECCHHHHHHHHH--------HSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhcCCc-cceeeEeeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9987 46 799999999999888876 33457789999998888887422 1344566677777777777654
Q ss_pred hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-----CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 349 ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-----NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 349 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-----~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.+...++.|.++++.+. .. . +.++.+.|.++||.+.+++ +++|++++ +++++++++++|++
T Consensus 285 ----~~~~~~~~~~~~~~~~~-~~---~---~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~~~e~~~l~~al~~ 350 (360)
T 3hdo_A 285 ----GYDVIPSQGNYLFATPP-DR---D---GKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---TREEMEQTLAALKE 350 (360)
T ss_dssp ----TCEECCCSSSEEEEECT-TC---C---HHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---CHHHHHHHHHHHHH
T ss_pred ----CCEEcCCCccEEEEECC-CC---C---HHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 22334567788777654 21 1 3678899999999998753 68999876 99999999999988
Q ss_pred HHH
Q psy14484 424 TFN 426 (430)
Q Consensus 424 ~l~ 426 (430)
+.+
T Consensus 351 ~~~ 353 (360)
T 3hdo_A 351 IGE 353 (360)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-29 Score=242.04 Aligned_cols=337 Identities=12% Similarity=0.106 Sum_probs=230.3
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.+|++++||.++. ..++ .+|++.+++ +++..... +....+..++.+.+++.+.+..+ .+++++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3688999998874 3566 578999999 87754321 11112234566667777665443 4567999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.+++++.. +++.|++.+++||++.......+ .....++.+..... +
T Consensus 116 ~~~~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------~ 162 (409)
T 2gb3_A 116 LFSFAVIAN--------PGDEILVLEPFYANYNAFAKIAG-------------VKLIPVTRRMEEGF------------A 162 (409)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHHT-------------CEEEEEECCGGGTS------------C
T ss_pred HHHHHHhCC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeccCCCCCC------------c
Confidence 999998743 56889999999998754332211 12233333210000 1
Q ss_pred -HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCc
Q psy14484 188 -IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPD 265 (430)
Q Consensus 188 -~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d 265 (430)
+++|+++++ +++++|++++ ++|++|.+ ++.+.+++|.++|+++|+++|+||+|+++.+.+..... ..+. ..|
T Consensus 163 ~~~~l~~~l~---~~~~~v~~~~-p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~ 236 (409)
T 2gb3_A 163 IPQNLESFIN---ERTKGIVLSN-PCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKV 236 (409)
T ss_dssp CCTTGGGGCC---TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTE
T ss_pred cHHHHHHhhC---cCCeEEEECC-CCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCE
Confidence 456666664 4688888888 88888854 56788999999999999999999999987665533222 1222 246
Q ss_pred ee--eeecccC-CCccccEEEEEcH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q psy14484 266 FL--CLSKGIT-GGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMK 339 (430)
Q Consensus 266 ~~--~~sK~l~-gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~ 339 (430)
++ ++||.++ +| +|+|++++++ ++++.+.. .....+ +.+++++.++.++|+... .+...++++++.+
T Consensus 237 i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~------~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (409)
T 2gb3_A 237 VVIDSVSKKFSACG-ARVGCLITRNEELISHAMK------LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVE 308 (409)
T ss_dssp EEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHH------HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCcc-ceEEEEEECcHHHHHHHHH------HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55 7899997 46 7999999998 88887764 223334 678888888888774211 1344566777777
Q ss_pred HHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC------CcEEeec----------CCEEEE
Q psy14484 340 KITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN------ELLLRPI----------GNTVYL 403 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~------Gv~~~~~----------~~~lR~ 403 (430)
++.+.|+++ ....+ ..+..|.++++.+. .. . +.++.+.|.++ ||.+.++ .+++|+
T Consensus 309 ~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-~~---~---~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRi 379 (409)
T 2gb3_A 309 TVLKKLEEH-GLKRF-TKPSGAFYITAELP-VE---D---AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRI 379 (409)
T ss_dssp HHHHHHHHT-TCCCB-CCCSBSSEEEEECS-SS---C---HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEE
T ss_pred HHHHHHHHc-Cceee-eCCCeeEEEEEEeC-CC---C---HHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEE
Confidence 888888765 32220 11223555555553 21 1 36788999887 9999874 368999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++ ++++++++++++|++++.++.
T Consensus 380 s~~--~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 380 ACV--LEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp ECC--SCHHHHHHHHHHHHHHHHHHH
T ss_pred EeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 887 899999999999999987653
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=243.74 Aligned_cols=346 Identities=8% Similarity=0.039 Sum_probs=231.1
Q ss_pred CEEEecccccccccCCCCCHHH--HHHHHHHHhh-c-cccccCCCCCHHHHHHHHHHHhhc-CCCCCe---EEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYI--NKALKNQLNK-L-EHVMLSNLTHKPVIKLSEKLSSLT-QYKLGH---CFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v--~~a~~~~~~~-~-~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~---v~~~~sgte 105 (430)
+.++||..|... .+|+ +|.+ .+++.+++.. . ..+....+..++.+.+++.+.+.. +.++++ |++|+||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999988542 6775 5666 7777666543 1 111111112233444444443322 556778 999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhc-cCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 183 (430)
|++.+++++.. +++.|++.+++||++...... .+ .....++.+. ++..
T Consensus 125 al~~~~~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~--------- 174 (430)
T 2x5f_A 125 GLSLVGDLFVN--------QDDTILLPEHNWGNYKLVFNTRNG-------------ANLQTYPIFDKDGHY--------- 174 (430)
T ss_dssp HHHHHHHHHCC--------TTCEEEEESSCCTHHHHHHTTTTC-------------CEEEEECCBCTTSCB---------
T ss_pred HHHHHHHHHhC--------CCCEEEEcCCcCccHHHHHHHhcC-------------CeEEEEeccCccCCc---------
Confidence 99999998754 568899999999987544332 21 1223343322 1111
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh-----cCCEEEEeccccCCCCccccc-cc
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-----YNIHLIADEIAVGCGRTGKFF-AC 257 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~-----~gi~li~DEv~~g~g~~g~~~-~~ 257 (430)
|+++|++++++++.+++++++.. ++|++| ..++.+.+++|.++|++ ||+++|+||+|+++.+.|..+ .+
T Consensus 175 ---d~~~l~~~l~~~~~~~~~v~i~~-p~nptG-~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 249 (430)
T 2x5f_A 175 ---TTDSLVEALQSYNKDKVIMILNY-PNNPTG-YTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSL 249 (430)
T ss_dssp ---CSHHHHHHHHHCCSSEEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCH
T ss_pred ---CHHHHHHHHHhcCCCCEEEEEcC-CCCCCC-CcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHH
Confidence 78899999986544677777776 788888 45788899999999999 999999999999886655421 11
Q ss_pred --ccCCCCCc------eeeeecccC-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-H
Q psy14484 258 --EHAEIWPD------FLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-I 324 (430)
Q Consensus 258 --~~~~~~~d------~~~~sK~l~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~-~ 324 (430)
...+..++ +.++||.++ .| +|+|++++ ++++++.+... .....+..+++.+++++.++.++|+ .
T Consensus 250 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~ 326 (430)
T 2x5f_A 250 FTALTNLHSNAILPIRLDGATKEFFAWG-FRVGFMTFGTSDQTTKEVLEAK--VKGLIRSNISSGPLPTQSAVKHVLKNN 326 (430)
T ss_dssp HHHHHTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEBCCCHHHHHHHHHH--HHHHHHTTTSSCCHHHHHHHHHHHHSC
T ss_pred HHHHhhccCCcceEEEEEecccCCCCCC-CCeEEEEEecCCHHHHHHHHHH--HhhhhhcccCCCChHHHHHHHHHHccC
Confidence 22122344 447899997 56 79999999 99988877640 0011122677889999998888887 3
Q ss_pred ---Hhh-cCHHHHHHHHHHHHHHHHHchh-cCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec
Q psy14484 325 ---FNK-DNILQRISQDMKKITKALTSLI-THPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI 397 (430)
Q Consensus 325 ---~~~-~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~ 397 (430)
.+. +...++++++.+++.+.|++.. .. .+....+.+ .++++.+. .. . ..++++.|.+ +||.+.++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~----~--~~~~~~~l~~~~gi~v~~g 398 (430)
T 2x5f_A 327 KQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV----D--PEALRKHLIDKYSIGVIAL 398 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS----C--HHHHHHHHHHHHCEECEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC----C--HHHHHHHHHHhCCEEEecC
Confidence 221 2255566667777777776321 22 233334444 45666664 21 1 3578899988 89999986
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++. .+++++++++++|+++++++
T Consensus 399 ~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 399 NATDIRIAFSC-VEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence 5789999885 59999999999999998764
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=234.50 Aligned_cols=334 Identities=14% Similarity=0.136 Sum_probs=232.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC---CCCC--HHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS---NLTH--KPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~---~~~~--~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
++..|+|.. ..|+.+|++++++.+++....+.... .+.. +...++++.+++.++.+++++++++||++|
T Consensus 15 ~~~i~l~~~------~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 15 ANKTYFNFG------GQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 88 (390)
T ss_dssp TTSEECCTT------TCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCeEEecCC------ccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence 345565532 36778899999999988764321111 1222 567889999999998777799999999999
Q ss_pred HHHHHHHH-HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHH
Q psy14484 107 VEVALKMS-FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEI 183 (430)
Q Consensus 107 ~~~al~~~-~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 183 (430)
++.+++++ .. ++++|++.+++||++......... ........++.+ +.+..
T Consensus 89 ~~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~~~~~~~--------- 142 (390)
T 1elu_A 89 CDIVLWGLDWH--------QGDEILLTDCEHPGIIAIVQAIAA---------RFGITYRFFPVAATLNQGD--------- 142 (390)
T ss_dssp HHHHHHHSCCC--------TTCEEEEETTCCHHHHHHHHHHHH---------HHCCEEEEECCGGGSSSSC---------
T ss_pred HHHHHhCCCCC--------CCCEEEEecCcccHHHHHHHHHHH---------HhCcEEEEEcCCCCCCccc---------
Confidence 99999987 32 568899999999986432111000 001123344443 22222
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH----hcCCEEEEeccccCCCCccccccccc
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN----NYNIHLIADEIAVGCGRTGKFFACEH 259 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~----~~gi~li~DEv~~g~g~~g~~~~~~~ 259 (430)
|+++|++.++ +++++|++++ ++|++|.+.+ +++|.++|+ ++|+++|+||+|+ ++..+ .+.
T Consensus 143 ---d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~----~~~ 206 (390)
T 1elu_A 143 ---AAAVLANHLG---PKTRLVILSH-LLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLP----LDF 206 (390)
T ss_dssp ---HHHHHHTTCC---TTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBC----CCT
T ss_pred ---hHHHHHHhcC---CCceEEEEec-cccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcC----CCh
Confidence 8899888885 4789999999 9999998877 999999999 9999999999997 54332 122
Q ss_pred CCCCCceee--eecccCCCccccEEEEEcHHHHHhhhccCC-ccc---------------ccccCCCCCCHHHHHHHHHH
Q psy14484 260 AEIWPDFLC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNN-INI---------------FLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 260 ~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~-~~~---------------~~~~~t~~~~~~~~~aa~~~ 321 (430)
....+|+++ ++|.+.+| .++|++++++++++.+..... .+. .....+.+.++.++.++.++
T Consensus 207 ~~~~~d~~~~s~~K~~~~~-~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 285 (390)
T 1elu_A 207 SRLEVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAA 285 (390)
T ss_dssp TTSCCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHH
T ss_pred hhcCCCEEEccccccccCC-CceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHH
Confidence 234568776 88977776 589999999988776653100 000 00112234567777777777
Q ss_pred HHHHhhcC----HHHHHHHHHHHHHHHHHchhcCCCeeeE---eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEE
Q psy14484 322 LEIFNKDN----ILQRISQDMKKITKALTSLITHPKIINF---RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 394 (430)
Q Consensus 322 l~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~ 394 (430)
++.+.+.+ ..++++++.+++.+.|+++ +++... ++.|.++.+.+. .+.. ..++.+.|.++||.+
T Consensus 286 l~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~gi~v 356 (390)
T 1elu_A 286 LQLHQRQGTAEERYQAICQRSEFLWRGLNQL---PHVHCLATSAPQAGLVSFTVD-SPLG-----HRAIVQKLEEQRIYL 356 (390)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS---TTEEESCSSCCSSSEEEEEEC-SSSC-----HHHHHHHHHHTTEEC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc---CCcEEecCccccccEEEEEcC-CCCC-----HHHHHHHHHHCCEEE
Confidence 87665433 4566677777777777664 333222 457888888775 3211 357889999999999
Q ss_pred eecC--CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 395 RPIG--NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 395 ~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.++. +++|++++..++++++++++++|++
T Consensus 357 ~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 357 RTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp EEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred EecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 9874 8999999999999999999999865
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=235.37 Aligned_cols=327 Identities=13% Similarity=-0.005 Sum_probs=222.9
Q ss_pred CCHHHHHHHHHHHhhccccccC-CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhc-----CCC
Q psy14484 51 SNSYINKALKNQLNKLEHVMLS-NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK-----GFL 124 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~-----g~~ 124 (430)
.+|++.+++.+++......... ....+...++++++++.++.+.+++++++||++|++.++++++.....+ +.+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 4789999999887653211111 1224566789999999998888899999999999999999987641110 112
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 204 (430)
+++.|++.+++|+++....... ..+...++.+..+.. |+++|++++++. ++++
T Consensus 122 ~gd~vl~~~~~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~------------d~~~l~~~i~~~--~~~~ 174 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFEKGREMM-------------DLEYIYAPIKEDYTI------------DEKFVKDAVEDY--DVDG 174 (397)
T ss_dssp SSCEEEEETTCCTHHHHHHHHH-------------TCEEEEECBCTTSSB------------CHHHHHHHHHHS--CCCE
T ss_pred CCeEEEECCcchhHHHHHHHHc-------------CceeEEEeeCCCCcC------------CHHHHHHHHhhc--CCeE
Confidence 4788999999998754333221 123345555433332 889999999842 5677
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC--ccc---------ccccccCCCCCceeeeeccc
Q psy14484 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGK---------FFACEHAEIWPDFLCLSKGI 273 (430)
Q Consensus 205 vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~--~g~---------~~~~~~~~~~~d~~~~sK~l 273 (430)
+++++ +++++|.+.+ +++|.++|++||+++|+||+|+++.. .+. .+.+.. ++.+.+.+++|.+
T Consensus 175 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~ 248 (397)
T 3f9t_A 175 IIGIA-GTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMG 248 (397)
T ss_dssp EEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTT
T ss_pred EEEEC-CCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEcccccc
Confidence 88888 8899998877 99999999999999999999986422 221 222333 4444455677988
Q ss_pred CCCccccEEEEEcHH-HHHhhhccCCcccccc--------cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy14484 274 TGGYLPLSLVMTTDK-IYNSIYYKNNINIFLH--------SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 344 (430)
Q Consensus 274 ~gG~~~ig~~~~~~~-~~~~~~~~~~~~~~~~--------~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~ 344 (430)
++| .++|+++++++ +.+.+.. ..++.. +++...+++++.++.+.+....-++..++++++.+++.+.
T Consensus 249 ~~~-~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (397)
T 3f9t_A 249 HCP-IPSGGILFKDIGYKRYLDV---DAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKK 324 (397)
T ss_dssp CCC-SSCEEEEESSGGGGGGTCE---ECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CCceEEEEeCHHHHHhhcc---CCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777 69999988765 4443322 001111 1222234555555555554332345677788888899998
Q ss_pred HHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHHH
Q psy14484 345 LTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIF 422 (430)
Q Consensus 345 l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~ 422 (430)
|+++ ....+. .+.+.++.+... . ...+.+.|.++||.+.++. +++|++++..++++++++++++|+
T Consensus 325 L~~~-g~~~~~--~~~~~~~~~~~~-~--------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~ 392 (397)
T 3f9t_A 325 LKEN-NFKPVI--EPILNIVAIEDE-D--------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILN 392 (397)
T ss_dssp HHHT-TCCBSS--CCSSSEEEEECT-T--------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHC-CCEEEc--CCCccEEEEEeC-C--------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 8876 333222 245666666554 2 3679999999999998875 899999999999999999999999
Q ss_pred HHHH
Q psy14484 423 QTFN 426 (430)
Q Consensus 423 ~~l~ 426 (430)
+++.
T Consensus 393 ~~l~ 396 (397)
T 3f9t_A 393 SIKR 396 (397)
T ss_dssp HHC-
T ss_pred HhhC
Confidence 8765
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=231.59 Aligned_cols=330 Identities=10% Similarity=0.023 Sum_probs=224.5
Q ss_pred CCCCHHHHHHHHHHHhhcccccc-CC-----CCCHHHHHHHHHHHhhcCC-CCCeEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 49 GHSNSYINKALKNQLNKLEHVML-SN-----LTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~~~-~~-----~~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
|+.+|++.+++.+++........ .. ...+...++++.+++.++. +++++++++||++|++.++++++.+..
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~-- 110 (406)
T 1kmj_A 33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNV-- 110 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHC--
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcC--
Confidence 46789999999999876421111 00 1345668899999999986 568999999999999999998842100
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
.++++|++.+++||+......... .........++.+..... |+++|+++++ ++
T Consensus 111 --~~gd~vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~~~------------d~~~l~~~l~---~~ 164 (406)
T 1kmj_A 111 --RAGDNIIISQMEHHANIVPWQMLC---------ARVGAELRVIPLNPDGTL------------QLETLPTLFD---EK 164 (406)
T ss_dssp --CTTCEEEEETTCCGGGTHHHHHHH---------HHHTCEEEEECBCTTSCB------------CGGGHHHHCC---TT
T ss_pred --CCCCEEEEecccchHHHHHHHHHH---------HhCCCEEEEEecCCCCCc------------CHHHHHHHhc---cC
Confidence 156889999999998643211100 001122344444332222 7788888885 47
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccc
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLP 279 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ 279 (430)
+++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ ++.. .+... ...+|++ +++|.++. ..
T Consensus 165 ~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~-~g~~--~~~~~--~~~~d~~~~s~~K~~g~--~G 232 (406)
T 1kmj_A 165 TRLLAITH-VSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH--PVDVQ--ALDCDFYVFSGHKLYGP--TG 232 (406)
T ss_dssp EEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS--CCCHH--HHTCSEEEEEGGGTTSC--TT
T ss_pred CeEEEEeC-CCccccCcCC----HHHHHHHHHHcCCEEEEEchhh-cCCC--CCccc--ccCCCEEEEEchhccCC--CC
Confidence 89999999 9999998877 9999999999999999999997 3332 11222 2246776 58898854 23
Q ss_pred cEEEEEcHHHHHhhhccCCccc------c---------cccCCCCCCHHHHHHHH-HHHHHHhh---cCHHHHHHHHHHH
Q psy14484 280 LSLVMTTDKIYNSIYYKNNINI------F---------LHSHSYSGNPLACCAAL-ATLEIFNK---DNILQRISQDMKK 340 (430)
Q Consensus 280 ig~~~~~~~~~~~~~~~~~~~~------~---------~~~~t~~~~~~~~~aa~-~~l~~~~~---~~~~~~~~~~~~~ 340 (430)
+|++++++++++.+........ . ....+.+.+++.+.++. ++++.+++ +...++++++.++
T Consensus 233 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 312 (406)
T 1kmj_A 233 IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHY 312 (406)
T ss_dssp CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8999999998887654100000 0 00111233445555444 67776653 3456677778888
Q ss_pred HHHHHHchhcCCCeeeEee--cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------------CCEEEEeC
Q psy14484 341 ITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------GNTVYLMP 405 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------------~~~lR~~~ 405 (430)
+.+.|+++ +.+....+ .|.++.+.+. . . . ..++.+.|.++||.+.++ .+++|+++
T Consensus 313 l~~~L~~~---~~~~~~~~~~~~~~~~~~~~-~-~---~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~ 382 (406)
T 1kmj_A 313 ALSQLESV---PDLTLYGPQNRLGVIAFNLG-K-H---H--AYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASL 382 (406)
T ss_dssp HHHHHTTS---TTEEEESCTTCCSEEEEEET-T-C---C--HHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEEC
T ss_pred HHHHHhcC---CCeEEecCCCcCCEEEEEEC-C-C---C--HHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEe
Confidence 88888765 33333334 6788888764 2 1 1 356888999999998864 27899999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+..+|++++++++++|+++++.+
T Consensus 383 ~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 383 AMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=231.01 Aligned_cols=332 Identities=15% Similarity=0.137 Sum_probs=228.7
Q ss_pred CCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc---cc-CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV---ML-SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~---~~-~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
||++|+||.++ .++|+ .+|++.+++.+++...... +. .....+...++++.+++.++. .+.+++ ++|+++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~-~sG~~a 118 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVF-SSAYNA 118 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEE-SCHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEE-CCcHHH
Confidence 78999999885 33454 3789999999998774321 11 123456788999999999973 455555 667779
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++.++.... +++.|++.++.|++.... .... ......++.+
T Consensus 119 ~~~~~~~l~~~~------~gd~Vl~~~~~~~~~~~~-~~~~------------g~~~~~v~~~----------------- 162 (401)
T 2bwn_A 119 NDATLSTLRVLF------PGLIIYSDSLNHASMIEG-IKRN------------AGPKRIFRHN----------------- 162 (401)
T ss_dssp HHHHHHHHHHHS------TTCEEEEETTCCHHHHHH-HHHS------------CCCEEEECTT-----------------
T ss_pred HHHHHHHHhcCC------CCCEEEECchhhHHHHHH-HHHc------------CCeEEEEcCC-----------------
Confidence 988888754321 456788777766554322 2111 2233444432
Q ss_pred HHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-C-CCCcccccccccCCC-
Q psy14484 187 AIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-G-CGRTGKFFACEHAEI- 262 (430)
Q Consensus 187 d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g-~g~~g~~~~~~~~~~- 262 (430)
|+++|++++++.. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ | ++..|..+. ...++
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~ 236 (401)
T 2bwn_A 163 DVAHLRELIAADDPAAPKLIAFES-VYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLM 236 (401)
T ss_dssp CHHHHHHHHHHSCTTSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCG
T ss_pred CHHHHHHHHHhhccCCceEEEEec-CcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCcc
Confidence 6788888887653 4788999999 9999998877 9999999999999999999998 3 444554332 33333
Q ss_pred -CCc--eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHH
Q psy14484 263 -WPD--FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQ 336 (430)
Q Consensus 263 -~~d--~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~ 336 (430)
.+| +.++||+++. +-|++++++++.+.+... ...+ ..+.+.++++++++.++++.++. ++..+++++
T Consensus 237 ~~~~i~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~--~~~~--~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 309 (401)
T 2bwn_A 237 HRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSY--APGF--IFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQM 309 (401)
T ss_dssp GGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHH--CHHH--HTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccCcEEEeechhhccC---CCCEEecCHHHHHHHHHh--CcCc--eecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 234 4489999984 227888898887776530 1111 11223456778888888887754 356788888
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------C-CEEEEeCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------G-NTVYLMPPY 407 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~-~~lR~~~~~ 407 (430)
+.+++.+.|+++ ..... .+.+.++++.+. .. ..+.++++.|+ ++||.+.++ + +++|++++.
T Consensus 310 ~~~~l~~~L~~~-g~~~~---~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~ 379 (401)
T 2bwn_A 310 HAKVLKMRLKAL-GMPII---DHGSHIVPVVIG-DP-----VHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSP 379 (401)
T ss_dssp HHHHHHHHHHHH-TCCBC---CCSSSCEEEECC-CH-----HHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCT
T ss_pred HHHHHHHHHHHC-CCccc---CCCCCeEEEEeC-Ch-----HHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeC
Confidence 999999999876 33322 234557777665 31 11467888886 789999764 1 489999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
.++++++++++++|++++++
T Consensus 380 ~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 380 VHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp TSCHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988765
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=241.20 Aligned_cols=345 Identities=10% Similarity=0.006 Sum_probs=224.1
Q ss_pred CCCEEEecccccccccCCCC--CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc-CC-----CCCeEEE--cC
Q psy14484 32 SGKRYLDAISSWWVNLFGHS--NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-QY-----KLGHCFY--GS 101 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~-----~~~~v~~--~~ 101 (430)
+|+.++||..|....+.|+. +|.+.+++.+++...... ..+.+.....++++.+++.+ +. .+++|++ |+
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~ 106 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLN-HEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCC-CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhc-cCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECC
Confidence 46789999998654555553 589999998887321111 00112222345555555554 21 4689999 99
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCC-----cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC-eeEeCCC--CCCC
Q psy14484 102 DGASAVEVALKMSFHYWYNKGFLNK-----KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTP--DSRN 173 (430)
Q Consensus 102 sgteA~~~al~~~~~~~~~~g~~~~-----~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~ 173 (430)
||++|++.+++++.... ++ +.|++..++||++.......+. . ...++.. +.+.
T Consensus 107 gg~~a~~~~~~~~~~~~------~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~ 167 (412)
T 1ajs_A 107 GGTGALRIGAEFLARWY------NGTNNKDTPVYVSSPTWENHNGVFTTAGF-------------KDIRSYRYWDTEKRG 167 (412)
T ss_dssp HHHHHHHHHHHHHHHHS------SSSSCCCSCEEEEESCCTHHHHHHHHTTC-------------SCEEEEECEETTTTE
T ss_pred CcHHHHHHHHHHHHHhC------cCcCCCCCeEEEcCCCcHHHHHHHHHcCC-------------ceeEEEeeecCCCCc
Confidence 99999999987654332 44 7899999999987654443222 2 2333331 2222
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc-
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG- 252 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g- 252 (430)
. |+++|++.+++++.++.++++.. ++|++| ..++.+++++|.++|++||+++|+||+|+++++.|
T Consensus 168 ~------------d~~~l~~~l~~~~~~~~~v~~~~-p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~ 233 (412)
T 1ajs_A 168 L------------DLQGFLSDLENAPEFSIFVLHAC-AHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNL 233 (412)
T ss_dssp E------------CHHHHHHHHHHSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCH
T ss_pred c------------CHHHHHHHHHhCCCCcEEEEECC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcc
Confidence 2 78999999986544667776666 778888 56788999999999999999999999999998765
Q ss_pred --cccccccCCCCCc----eeeeecccCC-CccccEEEEE---cHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHH
Q psy14484 253 --KFFACEHAEIWPD----FLCLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALAT 321 (430)
Q Consensus 253 --~~~~~~~~~~~~d----~~~~sK~l~g-G~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~~~ 321 (430)
....+..+...+| +.++||.++. | +|+|++++ ++++++.+.. .... .+..++. .+++++.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~a~~~~ 309 (412)
T 1ajs_A 234 EKDAWAIRYFVSEGFELFCAQSFSKNFGLYN-ERVGNLTVVAKEPDSILRVLS--QMQK-IVRVTWSNPPAQGARIVART 309 (412)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHH--HHHH-HHHTTTSSCCSHHHHHHHHH
T ss_pred cccchHHHHHhccCCcEEEEEecccccCCCC-cceEEEEEecCCHHHHHHHHH--HHHH-HHhcccCCCChHHHHHHHHH
Confidence 3223322211233 4589999988 7 79999999 7874443221 0000 1234454 588888888888
Q ss_pred HHHHh--------hcCHHHHHHHHHHHHHHHHHchhcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCc
Q psy14484 322 LEIFN--------KDNILQRISQDMKKITKALTSLITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 392 (430)
Q Consensus 322 l~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv 392 (430)
|+..+ .++..++++++.+++.+.|+++. .+ .+....+.+.++.+.-. + ...+.+.+.++||
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gv 379 (412)
T 1ajs_A 310 LSDPELFHEWTGNVKTMADRILSMRSELRARLEALK-TPGTWNHITDQIGMFSFTGL-N--------PKQVEYLINQKHI 379 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSSCCHHHHHCCSSEEECCC-C--------HHHHHHHHHTTCE
T ss_pred HcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCeeEEcCCCceEEEeCC-C--------HHHHHHHHHhCCE
Confidence 86431 14456677778888888887652 11 12222333434333211 1 2345555668899
Q ss_pred EEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 393 LLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 393 ~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.++ +|++++. .+++++++++++|+++++++
T Consensus 380 ~v~~~---~Ris~~~-~~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 380 YLLPS---GRINMCG-LTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp ECCTT---SEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred EecCC---cEEEeee-CCHHHHHHHHHHHHHHHHhc
Confidence 99875 5998773 58999999999999998764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.2e-29 Score=238.51 Aligned_cols=297 Identities=13% Similarity=0.098 Sum_probs=210.4
Q ss_pred HHHHHHHHHHhhc-CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 78 PVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 78 ~~~~l~~~l~~~~-~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
...++++.+++.+ +.+++++++++||++|++.+++++.. +++.|++.+++|++........+.
T Consensus 64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~--------~gd~Vl~~~~~~~~~~~~~~~~g~-------- 127 (375)
T 3op7_A 64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIE--------PGDHVISLYPTYQQLYDIPKSLGA-------- 127 (375)
T ss_dssp CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCC--------TTCEEEEEESSCTHHHHHHHHTTC--------
T ss_pred ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcC--------CCCEEEEeCCCchhHHHHHHHcCC--------
Confidence 3457788888876 45778999999999999999998754 668899999999986544332221
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
....++.+..... ..|+++|+++++ +++++|++++ ++|++| ..++.+++++|.++|++||
T Consensus 128 -----~~~~v~~~~~~~~----------~~d~~~l~~~l~---~~~~~v~~~~-~~nptG-~~~~~~~l~~i~~la~~~~ 187 (375)
T 3op7_A 128 -----EVDLWQIEEENGW----------LPDLEKLRQLIR---PTTKMICINN-ANNPTG-AVMDRTYLEELVEIASEVG 187 (375)
T ss_dssp -----EEEEEEEEGGGTT----------EECHHHHHHHCC---TTCCEEEEES-SCTTTC-CCCCHHHHHHHHHHHHTTT
T ss_pred -----EEEEEeccccCCC----------CCCHHHHHHhhc---cCCeEEEEcC-CCCCCC-CCCCHHHHHHHHHHHHHcC
Confidence 2233333211000 017899999885 4678888888 999999 5567888999999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHH
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLAC 315 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 315 (430)
+++|+||+|+++++.+.....+..+..+++.+|||.++ +| +|+|++++++++++.+.. .....+++.+++++
T Consensus 188 ~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~------~~~~~~~~~~~~~~ 260 (375)
T 3op7_A 188 AYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRD------YRDYTMICAGVFDD 260 (375)
T ss_dssp CEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTT------TGGGTTSCCCHHHH
T ss_pred CEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhhccCCCcHHH
Confidence 99999999998866533333344555577889999998 56 799999999999888875 33556777888888
Q ss_pred HHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHH-HHCC
Q psy14484 316 CAALATLEIFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAA-LKNE 391 (430)
Q Consensus 316 ~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~G 391 (430)
+++.++|+..+. +...++++++.+++.+.|++ .+.+....+.| .+.++.+. ... . ..++++.| .++|
T Consensus 261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~~~~ll~~~g 331 (375)
T 3op7_A 261 LVAQLALAHYQEILERNRHILEENLAILDQWIEE---EPLVSYIRPAVVSTSFVKIA-VDM--P---MEDFCLQLLQEHG 331 (375)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH---CTTEEECCCSSSSCEEEEEC-CSS--C---HHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCCeEEEeEEcC-CCC--C---HHHHHHHHHHhCC
Confidence 888887764321 22334445556666666654 35544444444 34444444 321 1 35677777 5789
Q ss_pred cEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 392 LLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 392 v~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|.+.|+ .+++|++++ .+++++++++++|+++++++
T Consensus 332 i~v~~g~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~~~ 371 (375)
T 3op7_A 332 VLLVPGNRFERDGYVRLGFA--CEQETLIKGLEKLSQFLRRF 371 (375)
T ss_dssp EECEEGGGGTCTTEEEECCC--SCHHHHHHHHHHHHHHHGGG
T ss_pred EEEeChhhhCCCCeEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 999886 378999654 56699999999999998764
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=231.95 Aligned_cols=348 Identities=12% Similarity=0.054 Sum_probs=227.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCC-CeEEEcCCchHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKL-GHCFYGSDGASAV 107 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~-~~v~~~~sgteA~ 107 (430)
+..++||..+. ..++ .+|+|.+++.+++..... +....+..++.+.+++.+.+.++ ..+ ++|++++||++|+
T Consensus 22 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~ 98 (410)
T 3e2y_A 22 DPSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSL 98 (410)
T ss_dssp STTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHH
Confidence 35678888773 3344 579999999999875321 11112234566677777766554 345 7999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
+.+++++.. +++.|++..++|+++.......+. ....++.+.............+ ..|
T Consensus 99 ~~~~~~~~~--------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~g~~~~~~~~-~~d 156 (410)
T 3e2y_A 99 FNSIQGLVD--------PGDEVIIMVPFYDCYEPMVRMAGA-------------VPVFIPLRSKPTDGMKWTSSDW-TFD 156 (410)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEECCCCSSCCBGGGE-ECC
T ss_pred HHHHHHhcC--------CCCEEEEeCCCchhhHHHHHHcCC-------------EEEEEeccccccccccccccCC-cCC
Confidence 999998754 567899999999987544333222 1122222100000000000000 017
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCC----C
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAE----I 262 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~----~ 262 (430)
+++++++++ .++++|++++ ++|++|. .++++.+++|.++|++||+++|+||+|+++.+.|... .+.... .
T Consensus 157 ~~~l~~~~~---~~~~~v~~~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 231 (410)
T 3e2y_A 157 PRELESKFS---SKTKAIILNT-PHNPLGK-VYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWER 231 (410)
T ss_dssp HHHHHTTCC---TTEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGG
T ss_pred HHHHHhhcC---CCceEEEEeC-CCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCe
Confidence 888888774 4788888888 9999995 5577889999999999999999999999887766422 222222 2
Q ss_pred CCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH-----hhcC----HHH
Q psy14484 263 WPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-----NKDN----ILQ 332 (430)
Q Consensus 263 ~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-----~~~~----~~~ 332 (430)
..++.++||.++ .| +|+|++++++++++.+.. .....+++.+++++.++.++|+.. .... ..+
T Consensus 232 ~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (410)
T 3e2y_A 232 TITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQT------VQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPK 304 (410)
T ss_dssp EEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHH------HHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred EEEEecchhhcCCCC-ceEEEEEECHHHHHHHHH------HHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 234557899998 56 799999999999887765 345567888999998888888631 1123 334
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCcc-c-----hhHHHHHHHHH-HHCCcEEeec--------
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ-I-----ETFSKKFFVAA-LKNELLLRPI-------- 397 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~-~-----~~~a~~~~~~l-~~~Gv~~~~~-------- 397 (430)
+++++.+++.+.|+++ +.....+..|.++++.+. ..... . .....++++.+ .++||.+.|+
T Consensus 305 ~~~~~~~~l~~~L~~~---g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~ 380 (410)
T 3e2y_A 305 ELEVKRDRMVRLLNSV---GLKPIVPDGGYFIIADVS-SLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS 380 (410)
T ss_dssp HHHHHHHHHHHHHHTT---TCEEEBCSBSSEEEEECG-GGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT
T ss_pred HHHHHHHHHHHHHHHC---CCeecCCCccEEEEEEch-hhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC
Confidence 5555666666666554 222223445666666665 31110 0 00123566665 4669999874
Q ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 398 ----GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 398 ----~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.+++||+++ .++++|++++++|++
T Consensus 381 ~~~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 381 KPHFEKLVRFCFI--KKDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHTTEEEEECC--CCHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEc--CCHHHHHHHHHHHHh
Confidence 268999755 599999999999875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=241.66 Aligned_cols=342 Identities=9% Similarity=-0.036 Sum_probs=220.7
Q ss_pred CCCEEEecccccccccCC--CCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcCCCCCeEEE--cCCchH
Q psy14484 32 SGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY--GSDGAS 105 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~--~~sgte 105 (430)
.+..++||..|.+.++.+ +.+|.+.+++.+++..... +.......++.+.+++.+... +.++++|++ ++||++
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~v~~~~~~g~~~ 102 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD-GLKSETTATLATVGGTG 102 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG-GCCGGGEEEEEEEHHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCC-CCCcccEEEEecCCchh
Confidence 456789999986655555 5689999999988765211 111112223444444444222 115678999 999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 183 (430)
|++.++++++... ++++|++..++||++.......+. ....++.+ +.+..
T Consensus 103 a~~~~~~~~~~~~------~gd~vl~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~--------- 154 (394)
T 2ay1_A 103 ALRQALELARMAN------PDLRVFVSDPTWPNHVSIMNFMGL-------------PVQTYRYFDAETRGV--------- 154 (394)
T ss_dssp HHHHHHHHHHHHC------TTCCEEEEESCCHHHHHHHHHHTC-------------CEEEEECEETTTTEE---------
T ss_pred HHHHHHHHHHhcC------CCCEEEEcCCCChhHHHHHHHcCC-------------ceEEEecccccCCcc---------
Confidence 9999999877542 457899999999987554433222 22333332 11221
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc--cccccccC-
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFACEHA- 260 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g--~~~~~~~~- 260 (430)
|++++++.+++.+.+++++++.. ++|++| ..++.+.+++|.++|++||+++|+||+|+++++.| ....+..+
T Consensus 155 ---d~~~l~~~l~~~~~~~~~~~~~~-~~nptG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 229 (394)
T 2ay1_A 155 ---DFEGMKADLAAAKKGDMVLLHGC-CHNPTG-ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIA 229 (394)
T ss_dssp ---CHHHHHHHHHTCCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHh
Confidence 78999999986433467777777 888888 46778899999999999999999999999887653 11122211
Q ss_pred CCCCc---eeeeecccC-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--------
Q psy14484 261 EIWPD---FLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-------- 325 (430)
Q Consensus 261 ~~~~d---~~~~sK~l~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-------- 325 (430)
...++ +.++||.++ +| +|+|++++ ++++++.+... ........+..++++++.++.++|+..
T Consensus 230 ~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~ 306 (394)
T 2ay1_A 230 SRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGA--MAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMA 306 (394)
T ss_dssp HHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHH--HHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHH
T ss_pred hcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHH--HHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHH
Confidence 11234 337899998 57 79999998 66654433220 000111222334788888888877633
Q ss_pred hhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEe
Q psy14484 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLM 404 (430)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~ 404 (430)
..+...++++++.+++.+.|+++.....+....+. |.++++.+. ...+.+.+.++||.+.++ +|++
T Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gi~v~~~---~Ris 373 (394)
T 2ay1_A 307 ELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------PEQVKRIKEEFGIYMVGD---SRIN 373 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------HHHHHHHHHHHCEECCTT---CEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC----------HHHHHHHHHhCCEEecCC---CeEE
Confidence 12345566777777887877765210011112233 555544333 135666777889999864 5999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy14484 405 PPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~ 424 (430)
++ .++++++++++++|+++
T Consensus 374 ~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 374 IA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp GG-GCCTTTHHHHHHHHHHH
T ss_pred ee-cCCHhhHHHHHHHHHHc
Confidence 88 57999999999999875
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=240.43 Aligned_cols=341 Identities=10% Similarity=0.036 Sum_probs=225.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CCHHHHHHHHHHHhhc----CCCCCeEEEcCCch
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSLT----QYKLGHCFYGSDGA 104 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~-~~~~~~~l~~~l~~~~----~~~~~~v~~~~sgt 104 (430)
.+|+++|||.+| ...+. .+|+|++++.+++.+.... ....| ......++++.+++++ +..+++|++++|++
T Consensus 66 ~~~~~~i~l~~g--~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIG--DTTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSC--CCCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCC--CCCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 368899999987 33444 6899999999998864321 11122 2233456666666665 56778999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++..+ ..+.. +++.|++.+++|+++............++. ....+...++.+......
T Consensus 143 ~al~~~-~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~---~~~~~~~~~~~~~~~~~~--------- 201 (449)
T 3qgu_A 143 CDIARI-QMMFG--------SKPTVAVQDPSYPVYVDTSVMMGMTGDHNG---TGFDGIEYMVCNPDNHFF--------- 201 (449)
T ss_dssp HHHHHH-HHHHC--------SSSCEEEEESCCTHHHHHHHHHTCSCCBCS---SSBTTEEEEECCGGGTTC---------
T ss_pred HHHHHH-HHHhC--------CCCEEEEcCCCChhHHHHHHHcCCcccccc---cccceeEEEecccccCCc---------
Confidence 999988 54443 678899999999998655444332210000 000113344433211110
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccC---
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHA--- 260 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~--- 260 (430)
.+++ +. .++++|+++. ++|++| ..++.+.+++|.++|++||+++|+||+|+++.+.|. ...+..+
T Consensus 202 -~~~~-------~~-~~~~~v~l~~-p~NPtG-~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~ 270 (449)
T 3qgu_A 202 -PDLS-------KA-KRTDIIFFCS-PNNPTG-AAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA 270 (449)
T ss_dssp -CCGG-------GC-CCCSEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTG
T ss_pred -CChh-------Hc-CCCCEEEEeC-CCCCCC-CcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCC
Confidence 0221 11 3566777777 888888 556788899999999999999999999998876653 1222222
Q ss_pred -CCCCceeeeecccC-CCccccEEEEEcHHHHH--------hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh---h
Q psy14484 261 -EIWPDFLCLSKGIT-GGYLPLSLVMTTDKIYN--------SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN---K 327 (430)
Q Consensus 261 -~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~--------~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~ 327 (430)
+....+.+|||.++ .| +|+|++++++++++ .+.. .....+++.+++++.++.++|+... .
T Consensus 271 ~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 343 (449)
T 3qgu_A 271 DEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNR------VMTTCFNGASNIVQAGGLACLQPEGLKEM 343 (449)
T ss_dssp GGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCCCHHHHHHHHHHTSHHHHHHH
T ss_pred CCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHH------HhhcccCCCCHHHHHHHHHHHhhcCHHHH
Confidence 22344668999998 57 89999999988765 2322 2234455778899988888876411 2
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-------C
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------G 398 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-------~ 398 (430)
++..++++++.+++.+.|+++ .. ....+ .|.++++.+. . . . +.++++.|+++ ||.+.|+ .
T Consensus 344 ~~~~~~~~~~~~~l~~~L~~~-g~---~~~~~~~~~~~~~~~~-~-~--~---~~~~~~~l~~~~gI~v~pg~~f~~~~~ 412 (449)
T 3qgu_A 344 NAMIKFYKENAQILKTTFTEM-GF---SVYGGDDAPYIWVGFP-G-K--P---SWDVFAEILERCNIVTTPGSGYGPAGE 412 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TC---CEEESSSSSEEEEECT-T-S--C---HHHHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CC---eeeCCCCeeEEEEECC-C-C--C---HHHHHHHHHHHCCEEEecchHhCCCCC
Confidence 455677788888888888765 22 22333 3666666553 2 1 1 35788888776 9999874 3
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+++||+ +..++++|++++++|+++++
T Consensus 413 ~~iRis--~~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 413 GFVRAS--AFGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp TEEEEE--CCSCHHHHHHHHHHHHHHHC
T ss_pred CeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 789997 45699999999999999875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=239.73 Aligned_cols=340 Identities=9% Similarity=-0.032 Sum_probs=214.7
Q ss_pred ECCCCEEEecccccccccCC--CCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc---C---CCCCeEEE--
Q psy14484 30 DVSGKRYLDAISSWWVNLFG--HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT---Q---YKLGHCFY-- 99 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~---~~~~~v~~-- 99 (430)
+..+..++||.+|.+.++.| +.+|++.+++.+++...... .+.......++++.+++.+ . .++++|++
T Consensus 22 ~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 99 (396)
T 2q7w_A 22 ADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTK--NYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQ 99 (396)
T ss_dssp ------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred ccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCccccc--CCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEe
Confidence 33567899999997655666 46799999999887653111 1112222334444444443 1 13678998
Q ss_pred cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCC
Q psy14484 100 GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKG 177 (430)
Q Consensus 100 ~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 177 (430)
++||++|++.++++++... +++.|++.+++||++.......+. ....++.. +.+..
T Consensus 100 ~~g~~~a~~~~~~~~~~~~------~gd~Vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~--- 157 (396)
T 2q7w_A 100 TPGGTGALRVAADFLAKNT------SVKRVWVSNPSWPNHKSVFNSAGL-------------EVREYAYYDAENHTL--- 157 (396)
T ss_dssp ESHHHHHHHHHHHHHHHHS------CCCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECEETTTTEE---
T ss_pred cccchhhHHHHHHHHHHhC------CCCEEEEcCCCchhHHHHHHHcCC-------------ceEEEecccCCCCCc---
Confidence 9999999999998776432 567899999999997654443222 22333331 11221
Q ss_pred CChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc--ccc
Q psy14484 178 NSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFF 255 (430)
Q Consensus 178 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g--~~~ 255 (430)
|+++|++.+++.+.+++++++.. ++|++| ..++.+++++|.++|++||+++|+||+|+++.+.+ ...
T Consensus 158 ---------d~~~l~~~l~~~~~~~~~v~~~~-p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 226 (396)
T 2q7w_A 158 ---------DFDALINSLNEAQAGDVVLFHGC-CHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAE 226 (396)
T ss_dssp ---------CHHHHHHHHTTCCTTCEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTH
T ss_pred ---------CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhH
Confidence 78999999975433467777677 888888 46778899999999999999999999999887653 222
Q ss_pred ccccCCCCCc----eeeeecccC-CCccccEEEEE---cHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 256 ACEHAEIWPD----FLCLSKGIT-GGYLPLSLVMT---TDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 256 ~~~~~~~~~d----~~~~sK~l~-gG~~~ig~~~~---~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
.+..+...+| +.++||.++ .| +|+|++++ +++ +.+.+.. .....+...+++++.++.++|+
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~ 299 (396)
T 2q7w_A 227 GLRAFAAMHKELIVASSYSXNFGLYN-ERVGACTLVAADSETVDRAFSQMKA------AIRANYSNPPAHGASVVATILS 299 (396)
T ss_dssp HHHHHHHHCSCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcEEEEEeccccccccc-cccceEEEEcCCHHHHHHHHHHHHH------HHhhccCCCCcHHHHHHHHHhc
Confidence 2221111122 447899998 57 79999997 553 4433332 1122233448888888877775
Q ss_pred HH-------h-hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEE
Q psy14484 324 IF-------N-KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL 394 (430)
Q Consensus 324 ~~-------~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~ 394 (430)
.. + .+...++++++.+++.+.|+++..-..+....+. |.++++.+. ...+.+.+.++||.+
T Consensus 300 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gv~v 369 (396)
T 2q7w_A 300 NDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------KEQVLRLREEFGVYA 369 (396)
T ss_dssp SHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------HHHHHHHHHHHCEEC
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----------HHHHHHHHHhcCeee
Confidence 32 0 1234456677777777777765200012222233 444333322 134666677889999
Q ss_pred eecCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 395 RPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 395 ~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.++ +|++++. .+++++++++++|++++
T Consensus 370 ~~~---~Ris~~~-~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 370 VAS---GRVNVAG-MTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CTT---CEEEGGG-CCTTTHHHHHHHHHHHC
T ss_pred cCC---ceEEEee-cCHHHHHHHHHHHHhcC
Confidence 864 6999884 49999999999998753
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-28 Score=234.94 Aligned_cols=340 Identities=7% Similarity=0.021 Sum_probs=226.5
Q ss_pred CCEEEecccccccc---cCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcCCCCC---eEEEcCCchH
Q psy14484 33 GKRYLDAISSWWVN---LFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQYKLG---HCFYGSDGAS 105 (430)
Q Consensus 33 g~~~lD~~~~~~~~---~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~v~~~~sgte 105 (430)
|..++||..|.... .+. .+|.+.+++.+...... .+....+..++++.+++.+.+.. +++ +|++|+||++
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~--~~~~~~~i~~t~g~~~ 113 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLV-FLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF--RPEGHIRSIATAGGTG 113 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBC-CCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG--CCSSEEEEEEESHHHH
T ss_pred CCCeEECCCCcccCCCCCcc-ccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc--CccccccEEECCchHH
Confidence 45678887763311 222 46778888766443221 12222234456677777776655 355 9999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIA 184 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 184 (430)
|+..+++.+.. +++.|++.+++|+++.......+. ....++.. .++..
T Consensus 114 al~~~~~~l~~--------~gd~Vl~~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~---------- 162 (418)
T 3rq1_A 114 GIHHLIHNYTE--------PGDEVLTADWYWGAYRVICSDTGR-------------TLVTYSLFDEHNNF---------- 162 (418)
T ss_dssp HHHHHHHHHSC--------TTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECSBCTTSSB----------
T ss_pred HHHHHHHHhcC--------CCCEEEECCCCchhHHHHHHHcCC-------------EEEEEeeeCCCCCc----------
Confidence 99999998754 568899999999887544333222 22344432 22222
Q ss_pred HHHHHHHHHHHHhC--CCCeEEEEEcccc-ccCCCcccCChHHHHHHHHHHH------hcCCEEEEeccccCCCCccc--
Q psy14484 185 RCAIFDLEILLKKN--HNKIAAIIIEPLV-QCAGGMIMYDSIYLKLVREICN------NYNIHLIADEIAVGCGRTGK-- 253 (430)
Q Consensus 185 ~~d~~~le~~l~~~--~~~~~~vi~ep~v-~~~~G~~~~~~~~l~~l~~l~~------~~gi~li~DEv~~g~g~~g~-- 253 (430)
|+++|+++++++ ++..++++++. + +|++| ..++.+.+++|.++|+ +||+++|+||+|.+|++.+.
T Consensus 163 --d~~~l~~~l~~~~~~~~~~~vi~~~-p~~NPtG-~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~ 238 (418)
T 3rq1_A 163 --NHEAFQNRVNELAAKQTNVVVIFNT-PGNNPTG-YSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEV 238 (418)
T ss_dssp --CHHHHHHHHHHHHHHCSEEEEEEEC-SSCTTTC-CCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHH
T ss_pred --CHHHHHHHHHHhhccCCCEEEEEeC-CCCCCCC-CCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHH
Confidence 789999988753 13344666665 5 89999 5566777999999999 89999999999999987664
Q ss_pred -ccccccCCCCCc---ee--eeecccCC-CccccEEEEE---cHHHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHH
Q psy14484 254 -FFACEHAEIWPD---FL--CLSKGITG-GYLPLSLVMT---TDKIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATL 322 (430)
Q Consensus 254 -~~~~~~~~~~~d---~~--~~sK~l~g-G~~~ig~~~~---~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~aa~~~l 322 (430)
.+.....++.++ ++ +|||.++. | +|+|++++ ++++++.+.. ..... .+.+...+.+++.++.++|
T Consensus 239 ~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~l 314 (418)
T 3rq1_A 239 RAFFNKFSHLPKEILTCVCYSLSKGFTMYG-QRVGAMIGISDDEEIADEFFE---VNKSTSRATWSNICRPAMRTMANIV 314 (418)
T ss_dssp HGGGGGGTTCCTTEEEEEEEESTTTTTCCS-SCCEEEEEEESSHHHHHHHHH---HHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEEEeCCCCCcCcC-CcceEEEEEeCCHHHHHHHHH---HHHHHHhhccCCCchHHHHHHHHHh
Confidence 222233445555 22 79999974 6 89999999 8888887764 01111 1122356777777777766
Q ss_pred HHH------hh--cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHHHHHHHHCCcE
Q psy14484 323 EIF------NK--DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAALKNELL 393 (430)
Q Consensus 323 ~~~------~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l~~~Gv~ 393 (430)
+.. .+ ....++++++.+++.+.|+++ ..+. ..+.+.++.+ .+. + +.++++.|.++||.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gi~ 381 (418)
T 3rq1_A 315 ADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPM---LPYRGGFFITIPTD-S--------ANAICEELKKEHIY 381 (418)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCC---CCCCSSSEEEEECT-T--------HHHHHHHHHHTTEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---CCCCceEEEEcCCC-C--------HHHHHHHHHhCCEE
Confidence 421 11 234456677777777777765 3322 2344444433 332 1 35788889999999
Q ss_pred EeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 394 LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 394 ~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.|+++++||+++ .++++++++++++|+++++++
T Consensus 382 v~~g~~~iRis~~-~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 382 VIALANGIRIAAC-GIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp CEECSSEEEEEGG-GSCHHHHTTHHHHHHHHHHHT
T ss_pred EecCCCCeEEEEe-cCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999865 579999999999999999865
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-28 Score=229.23 Aligned_cols=320 Identities=11% Similarity=0.050 Sum_probs=216.8
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
++++.+|++++||.++ .++++ .+|++.+++.+++.... .++.....++++++++.++.+++++++|+|+++|
T Consensus 8 ~~~~~~g~~~id~~~~--~~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~a 79 (350)
T 3fkd_A 8 EGITPLSSEIVNFSTT--VWTDG-DKDHLEKHLVENLNCIR-----HYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAA 79 (350)
T ss_dssp --------CCEECSCC--SCCCS-CCHHHHHHHHHTGGGGG-----SCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHH
T ss_pred hHhhhccccEEEccCC--CCCCC-CCHHHHHHHHHhHhHHh-----cCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHH
Confidence 6899999999999988 45676 78999999998874322 2233323578888999888778899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIAR 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (430)
+..+++++. ++.|++.+++|+++.......+ .....++. +.....
T Consensus 80 l~~~~~~l~----------gd~Vi~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~----------- 125 (350)
T 3fkd_A 80 FYQIAQAFR----------GSRSLIAIPSFAEYEDACRMYE-------------HEVCFYPSNEDIGEA----------- 125 (350)
T ss_dssp HHHHHHHTT----------TCEEEEEESCCHHHHHHHHHTT-------------CEEEEEETTSCGGGS-----------
T ss_pred HHHHHHHHC----------CCEEEEeCCCcHHHHHHHHHcC-------------CeEEEEecCCccccC-----------
Confidence 999988763 4689999999988754333322 22334444 211000
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc--cccCCCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA--CEHAEIW 263 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~--~~~~~~~ 263 (430)
+ .+++++++++. ++|++|.+.+ .+.+++|.+.|+++ ++|+||+|+++...+.... .+..+..
T Consensus 126 -~-----------~~~~~~v~i~~-p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~~~~~~~~~~~~ 189 (350)
T 3fkd_A 126 -D-----------FSNMDFCWLCN-PNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEVIRPADIKGRKNL 189 (350)
T ss_dssp -C-----------CTTCSEEEEES-SCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCCCCGGGGTTCSSE
T ss_pred -c-----------cCCCCEEEEeC-CCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcchhhHHhhcCCCE
Confidence 1 13566677777 8888996655 44455666655544 9999999998876654221 1222222
Q ss_pred CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHH
Q psy14484 264 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKI 341 (430)
Q Consensus 264 ~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l 341 (430)
..+.+|||.++ .| +++|++++++++.+.+.. ...+++.+++++.++.++|+..+ -.+..++..++.+++
T Consensus 190 i~~~S~sK~~~~~G-~r~G~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 260 (350)
T 3fkd_A 190 VMVYSFSHAYGIPG-LRIGYIVANKDFMKRVAA--------FSTPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDF 260 (350)
T ss_dssp EEEEESHHHHSCGG-GCCEEEECCHHHHHHHHT--------TCCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHH
T ss_pred EEEecCchhccCcc-hheEeEEeCHHHHHHHHH--------hCCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 33457899998 56 799999999999988876 33466788998888888887433 112223333666777
Q ss_pred HHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCCCHHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILNKNE 413 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~t~e~ 413 (430)
.+.|+++ +.+...++.|.++++.+. .. . +.++.+.|.+ +||.+.++ .+++|++++ ++++
T Consensus 261 ~~~L~~~---~~~~~~~~~~~~~~~~~~-~~---~---~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~ 327 (350)
T 3fkd_A 261 ITALNRL---DGVEVHPSGTTFFLLRLK-KG---T---AAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQ 327 (350)
T ss_dssp HHHHHHS---TTEEECCCSSSEEEEEES-SS---C---HHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHH
T ss_pred HHHHhcC---CCcEECCCCCcEEEEECC-CC---C---HHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHH
Confidence 7777654 555555677888877776 42 1 3679999998 89999875 368999866 8899
Q ss_pred HHHHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQTFN 426 (430)
Q Consensus 414 i~~~~~~l~~~l~ 426 (430)
+++++++|++.+.
T Consensus 328 ~~~l~~al~~~~~ 340 (350)
T 3fkd_A 328 NQLFIKALETFLE 340 (350)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=229.95 Aligned_cols=337 Identities=12% Similarity=0.064 Sum_probs=226.3
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~ 108 (430)
+|..++||..+ ...++ .+|.+.+++.+.+..... +....+..++++.+++.+.+..+ .++++|++|+||++|++
T Consensus 29 ~~~~~i~l~~~--~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~ 105 (385)
T 1b5p_A 29 QGVDLVALTAG--EPDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALF 105 (385)
T ss_dssp TTCCCEECCCS--SCSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEecCC--CCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHH
Confidence 45678898877 33454 468999999988764221 11112334566777777766554 35679999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARC 186 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (430)
.+++.+.. +++.|++.+++|+++.......+ .....++.+. .+..
T Consensus 106 ~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~------------ 152 (385)
T 1b5p_A 106 NLFQAILD--------PGDEVIVLSPYWVSYPEMVRFAG-------------GVVVEVETLPEEGFVP------------ 152 (385)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTCC------------
T ss_pred HHHHHhcC--------CCCEEEEcCCCchhHHHHHHHcC-------------CEEEEeecCcccCCCC------------
Confidence 99998754 56889999999987643322211 2223444321 1111
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc-
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD- 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d- 265 (430)
|+++|+++++ +++++|++.. ++|++| ...+.+.+++|.++|++||+++|+||+|+.+...|....+..+.-..+
T Consensus 153 d~~~l~~~l~---~~~~~v~~~~-p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i 227 (385)
T 1b5p_A 153 DPERVRRAIT---PRTKALVVNS-PNNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (385)
T ss_dssp CHHHHHTTCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred CHHHHHHhcC---CCCEEEEEeC-CCCCCC-CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEE
Confidence 7888888875 4577777766 778888 556778899999999999999999999997755442112221111112
Q ss_pred -eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH---Hhh--cCHHHHHHHHH
Q psy14484 266 -FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI---FNK--DNILQRISQDM 338 (430)
Q Consensus 266 -~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~---~~~--~~~~~~~~~~~ 338 (430)
+.+|||.++. | +|+|++++++++++.+.. .....+++.+.+++.++.++|+. ... +...++++++.
T Consensus 228 ~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~ 300 (385)
T 1b5p_A 228 TVNGAAKAFAMTG-WRIGYACGPKEVIKAMAS------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRR 300 (385)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCcc-cceEEEEeCHHHHHHHHH------HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 3378999874 6 899999999998887765 22345667788888888777753 211 34456667777
Q ss_pred HHHHHHHHchhcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHH
Q psy14484 339 KKITKALTSLITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKN 412 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e 412 (430)
+++.+.|+++ .... ..+.|. ++++.+. ... .. ..++.+.|.++||.+.++ .+++|+++. ++++
T Consensus 301 ~~l~~~L~~~-g~~~---~~~~~~~~~~~~~~-~~~--~~--~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~--~~~~ 369 (385)
T 1b5p_A 301 DLLLEGLTAL-GLKA---VRPSGAFYVLMDTS-PIA--PD--EVRAAERLLEAGVAVVPGTDFAAFGHVRLSYA--TSEE 369 (385)
T ss_dssp HHHHHHHHHH-TCCB---CCCSBTTEEEEECT-TTC--SS--HHHHHHHHHHTTEECEESGGGTCTTEEEEECC--SCHH
T ss_pred HHHHHHHHHC-CCee---cCCCeeEEEEEecC-CCC--CC--HHHHHHHHHHCCeEEecccccCCCCeEEEEec--CCHH
Confidence 7787887765 3222 223344 4444443 211 11 367889999999999885 368999866 7999
Q ss_pred HHHHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTFNE 427 (430)
Q Consensus 413 ~i~~~~~~l~~~l~~ 427 (430)
++++++++|++++++
T Consensus 370 ~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 370 NLRKALERFARVLGR 384 (385)
T ss_dssp HHHHHHHHGGGGC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999877653
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=230.13 Aligned_cols=306 Identities=12% Similarity=0.053 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCC---------CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhh
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGA 143 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~---------~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~ 143 (430)
.+..++++++++.+.+.++... ++|++|+|+++|+..+++++.. +++.|++.+|+|+++....
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~--------~gd~Vlv~~p~y~~~~~~~ 149 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIIN--------PGDNVLLDEPAYSGTLQSL 149 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCC--------CCCEEEEeCCCcHHHHHHH
Confidence 3445677888888887766443 5899999999999999998864 5688999999999875443
Q ss_pred hccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---------CCeEEEEEccccccC
Q psy14484 144 LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---------NKIAAIIIEPLVQCA 214 (430)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~~~vi~ep~v~~~ 214 (430)
...+ .....++.+. .. .|+++|++++++++ .++++++++|.++|+
T Consensus 150 ~~~g-------------~~~~~v~~~~--~~-----------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NP 203 (425)
T 2r2n_A 150 HPLG-------------CNIINVASDE--SG-----------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNP 203 (425)
T ss_dssp GGGT-------------CEEEEECEET--TE-----------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTT
T ss_pred HHcC-------------CEEEEeCcCC--CC-----------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCC
Confidence 3221 1222333221 11 17899999997432 357788776547888
Q ss_pred CCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc----cccccCCCCCceeeeecccCCCccccEEEEEcHHHH
Q psy14484 215 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF----FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIY 290 (430)
Q Consensus 215 ~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~----~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~ 290 (430)
+|. ..+.+.+++|.++|++||+++|+||+|+++.+.|.. ..++..+....+.+|||.++.| +|+|+++++++++
T Consensus 204 tG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~G-lRiG~~~~~~~l~ 281 (425)
T 2r2n_A 204 TGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSG-LRIGFLTGPKPLI 281 (425)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCST-TCCEEEEEEHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCc-cceEEEecCHHHH
Confidence 884 567888999999999999999999999977555532 1222222234456899999877 8999999999998
Q ss_pred HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHchhcCCCe-e-eEeecc
Q psy14484 291 NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-------DNILQRISQDMKKITKALTSLITHPKI-I-NFRQKG 361 (430)
Q Consensus 291 ~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-------~~~~~~~~~~~~~l~~~l~~l~~~~~~-~-~~~~~g 361 (430)
+.+.. .....+++.+++++.++.++|+.+.+ +...++++++.+++.+.|++. .+.+ . ..+..|
T Consensus 282 ~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~p~~g 353 (425)
T 2r2n_A 282 ERVIL------HIQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW--LTGLAEWHVPAAG 353 (425)
T ss_dssp HHHHH------HHHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSSEEECCCSBS
T ss_pred HHHHH------HHHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCeEEeCCCce
Confidence 87765 33455678899999888888875322 123344455555555665542 2332 1 224456
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.++++.+. .... . ...+.+.|.++||.+.|+ .+++|++++. .+++++++++++|++++.++
T Consensus 354 ~~~~~~~~-~~~~-~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 354 MFLWIKVK-GIND-V---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp SEEEEEET-TCSC-C---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeC-CCCC-H---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence 77777776 4221 1 123577888999999874 2689998773 69999999999999998765
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=228.11 Aligned_cols=343 Identities=10% Similarity=0.070 Sum_probs=231.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc---ccCCCC---CHHHHHHHHHHHhhcCC-CCCeEEEcCCch
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV---MLSNLT---HKPVIKLSEKLSSLTQY-KLGHCFYGSDGA 104 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~---~~~~~~l~~~l~~~~~~-~~~~v~~~~sgt 104 (430)
+|+.+++|..+. .++.+|++.+++.+++...... ....+. .+...++++.+++.++. +++++++++||+
T Consensus 25 ~g~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 100 (420)
T 1t3i_A 25 NGHPLVYLDNAA----TSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNAT 100 (420)
T ss_dssp TTEECEECBTTT----CCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc----cCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChH
Confidence 566788877653 2467899999999988763211 011121 35567899999999976 568999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+|++.++++++... . .++++|++.+++||+......... .........++.+..+..
T Consensus 101 ~a~~~~~~~~~~~~-~---~~gd~Vl~~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~~~~~~---------- 157 (420)
T 1t3i_A 101 EAINLVAYSWGMNN-L---KAGDEIITTVMEHHSNLVPWQMVA---------AKTGAVLKFVQLDEQESF---------- 157 (420)
T ss_dssp HHHHHHHHHTHHHH-C---CTTCEEEEETTCCGGGTHHHHHHH---------HHHCCEEEEECBCTTSSB----------
T ss_pred HHHHHHHHHhhhcc-c---CCCCEEEECcchhHHHHHHHHHHH---------HhcCcEEEEeccCCCCCc----------
Confidence 99999999884210 0 156789999999998531110000 001122344544432222
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ ++... +....+ .+
T Consensus 158 --d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~ 222 (420)
T 1t3i_A 158 --DLEHFKTLLS---EKTKLVTVVH-ISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP--LDVQLI--DC 222 (420)
T ss_dssp --CHHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TC
T ss_pred --CHHHHHHhhC---CCceEEEEeC-CcccccCcCC----HHHHHHHHHHcCCEEEEEhhhc-cCCcc--Cchhhc--CC
Confidence 7899999885 4789999999 9999998877 9999999999999999999997 43321 122222 36
Q ss_pred ceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccc--------------cccCCCCCCHHHHHHHHH-HHHHHhh
Q psy14484 265 DFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIF--------------LHSHSYSGNPLACCAALA-TLEIFNK 327 (430)
Q Consensus 265 d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~--------------~~~~t~~~~~~~~~aa~~-~l~~~~~ 327 (430)
|++++| |.+++ .++|++++++++++.+......... ....+.+.+++.+.++.. +++.+++
T Consensus 223 di~~~s~sK~~~~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 300 (420)
T 1t3i_A 223 DWLVASGHKMCAP--TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTD 300 (420)
T ss_dssp SEEEEEGGGTTSC--TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCC--CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHH
Confidence 877665 96544 3489999999988877541000000 000112344555554443 6776644
Q ss_pred ---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEe------ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-
Q psy14484 328 ---DNILQRISQDMKKITKALTSLITHPKIINFR------QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI- 397 (430)
Q Consensus 328 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~- 397 (430)
+...++++++.+++.+.|+++ +.+.... +.|.++.+.+. . . . ..++.+.|.++||.+.++
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~-~-~---~--~~~~~~~l~~~gi~v~~~~ 370 (420)
T 1t3i_A 301 LGMENIHNYEVELTHYLWQGLGQI---PQLRLYGPNPKHGDRAALASFNVA-G-L---H--ASDVATMVDQDGIAIRSGH 370 (420)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTC---TTEEEESCCGGGSCBCSEEEEEET-T-B---C--HHHHHHHHHTTTEECBCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhC---CCeEEeCCCccccccCCEEEEEEC-C-C---C--HHHHHHHHHHCCeEEeecc
Confidence 456677788888888888765 3332222 24788888765 3 1 1 356888999999999876
Q ss_pred ------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ------------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++|++++..++++++++++++|+++++++
T Consensus 371 ~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~ 413 (420)
T 1t3i_A 371 HCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 413 (420)
T ss_dssp TTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4689999998899999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-27 Score=224.73 Aligned_cols=333 Identities=14% Similarity=0.081 Sum_probs=233.1
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~al~ 112 (430)
+.|+|..+ -++.+|++.+++.+++.. ++. ....+..+++++.+++.++.+ .+++++++||++|+..+++
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~ 89 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIR 89 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHH
Confidence 46777643 245688999888776432 110 112467789999999998765 5679999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCc--chhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGE--TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++.. +++.|++.+++||+. ...... . ....+.++.+..+.. |+++
T Consensus 90 ~l~~--------~gd~vl~~~~~~~~~~~~~~~~~-~------------g~~~~~v~~~~~~~~------------d~~~ 136 (386)
T 2dr1_A 90 NGVS--------KGGKVLVTIIGAFGKRYKEVVES-N------------GRKAVVLEYEPGKAV------------KPED 136 (386)
T ss_dssp HHSC--------TTCEEEEEESSHHHHHHHHHHHH-T------------TCEEEEEECCTTCCC------------CHHH
T ss_pred Hhhc--------CCCeEEEEcCCchhHHHHHHHHH-h------------CCceEEEecCCCCCC------------CHHH
Confidence 8753 568899999999873 221111 1 122344444332222 8899
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS 270 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s 270 (430)
|++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+.+ ... .... ...+|++++|
T Consensus 137 l~~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~--~~~~--~~~~di~~~s 205 (386)
T 2dr1_A 137 LDDALRKN-PDVEAVTITY-NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD--IKFD--KWGLDVVFSS 205 (386)
T ss_dssp HHHHHHHC-TTCCEEEEES-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC--CCTT--TTTCSEEEEE
T ss_pred HHHHHhcC-CCCcEEEEEe-ecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc--cccc--ccCCcEEEEe
Confidence 99999652 4678888888 9999998876 999999999999999999999733 221 1222 2346887666
Q ss_pred --cccCCCccccEEEEEcHHHHHhhhccCCc----------ccc--cccCCCCCCHHHHHHHHHHHHHHhhc----CHHH
Q psy14484 271 --KGITGGYLPLSLVMTTDKIYNSIYYKNNI----------NIF--LHSHSYSGNPLACCAALATLEIFNKD----NILQ 332 (430)
Q Consensus 271 --K~l~gG~~~ig~~~~~~~~~~~~~~~~~~----------~~~--~~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~ 332 (430)
|.++++ .++|++++++++++.+...... ... ....+++.++++++++.++|+.+.+. +..+
T Consensus 206 ~sK~~~~~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~ 284 (386)
T 2dr1_A 206 SQKAFGVP-PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLE 284 (386)
T ss_dssp TTSTTCCC-SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCC-CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999876 3689999999987766320000 001 12345567888888888888876543 5667
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCC
Q psy14484 333 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPP 406 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~ 406 (430)
+++++.+++.+.|+++ ........ ...+.++++.+. .+.. ..++.+.|.++||.+.++ ++++|++++
T Consensus 285 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~ 357 (386)
T 2dr1_A 285 MYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTP-PGIK-----GDEVYEAMRKRGFELAKGYGSVKEKTFRIGHM 357 (386)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECC-TTCC-----HHHHHHHHHHTTEECEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcC-CCCC-----HHHHHHHHHHCCeEEecCccccCCCEEEEECC
Confidence 7888888888888875 33322110 114677777765 3211 367999999999999875 379999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..++++++++++++|+++++++
T Consensus 358 ~~~~~~~i~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 358 GYMKFEDIQEMLDNLREVINEL 379 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 8899999999999999998764
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=238.51 Aligned_cols=304 Identities=13% Similarity=0.083 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHH--HHHHHHHHhhhhcCCCC--------CcEEEEEcCCCCCcchhhhcc
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVE--VALKMSFHYWYNKGFLN--------KKKFICLQNSYHGETLGALAV 146 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~--~al~~~~~~~~~~g~~~--------~~~vl~~~~~yhg~~~~~~~~ 146 (430)
....++++.+++.+++++++|++|+|+++|+. .+++++.... ++ ++.|++.+++|+++.......
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~-----~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~ 144 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGV-----RGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL 144 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCC-----TTCSSCGGGGCCEEEEEESCCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccC-----CCccccccCCCCEEEEcCCCcHHHHHHHHHc
Confidence 34568888888888878889999999999997 8888766410 13 589999999999875443332
Q ss_pred CCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
+. ....++.... . .|+++|++++++ ..++++|+++|.++|++| ...+.+.++
T Consensus 145 g~-------------~~~~v~~~~~--g-----------~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG-~~~~~~~l~ 196 (423)
T 3ez1_A 145 GF-------------ELLTVDMQSD--G-----------PDVDAVERLAGT-DPSVKGILFVPTYSNPGG-ETISLEKAR 196 (423)
T ss_dssp TC-------------EEEEEEEETT--E-----------ECHHHHHHHHHS-CTTEEEEEECSSSCTTTC-CCCCHHHHH
T ss_pred CC-------------EEEeccCCCC--C-----------CCHHHHHHHHhh-CCCceEEEECCCCCCCCC-cCCCHHHHH
Confidence 22 2223332211 1 188999999963 257888888764788888 556667799
Q ss_pred HHHHHH-HhcCCEEEEeccccCCCCcc---c----cccc----ccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhh
Q psy14484 227 LVREIC-NNYNIHLIADEIAVGCGRTG---K----FFAC----EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY 294 (430)
Q Consensus 227 ~l~~l~-~~~gi~li~DEv~~g~g~~g---~----~~~~----~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~ 294 (430)
+|.++| ++||+++|+||+|+.+...+ . .+.+ +..+....+.+|||.+.+| +|+|++++++++++.+.
T Consensus 197 ~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~~~~~~~ 275 (423)
T 3ez1_A 197 RLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAG-AGLGFVASSEDNIRWLS 275 (423)
T ss_dssp HHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSS-SSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCC-cceEEEEeCHHHHHHHH
Confidence 999999 99999999999998432222 1 1111 1223334466899986667 79999999999988876
Q ss_pred ccCCcccccccCCCCCCHHHHHHHHHHHHH-Hh---h--cCHHHHHHHHHHHHHHHHHc-hhcCC-Ceee-EeecceEEE
Q psy14484 295 YKNNINIFLHSHSYSGNPLACCAALATLEI-FN---K--DNILQRISQDMKKITKALTS-LITHP-KIIN-FRQKGMIWA 365 (430)
Q Consensus 295 ~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-~~---~--~~~~~~~~~~~~~l~~~l~~-l~~~~-~~~~-~~~~g~~~~ 365 (430)
. .....+++.+++++.++.++++. .. . ....+.++++.+.+.+.|.+ +...+ .+.. .+..|++++
T Consensus 276 ~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~ 349 (423)
T 3ez1_A 276 K------YLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFIS 349 (423)
T ss_dssp H------HHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEE
T ss_pred H------HHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEE
Confidence 5 34556778888888888777764 11 0 12223334444555555543 23333 2222 234577788
Q ss_pred EEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+. .. . ...+.+.|.++||.+.++ .+++||+++.. +++++++++++|++++.++
T Consensus 350 ~~~~-~~---~---~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 350 LDTA-EP---V---ADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp EEES-SS---C---HHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred EECC-CC---c---HHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8776 42 1 357888899999999882 26899998755 9999999999999998764
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=229.69 Aligned_cols=348 Identities=11% Similarity=0.019 Sum_probs=224.9
Q ss_pred CCEEEecccccccc-cCCCCCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhh------c--CCCCCeEEEcC
Q psy14484 33 GKRYLDAISSWWVN-LFGHSNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSL------T--QYKLGHCFYGS 101 (430)
Q Consensus 33 g~~~lD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~------~--~~~~~~v~~~~ 101 (430)
++.++||..+.... +-...+|++.+++.+++..... +.......++.+.+++.+.+. . +.++++|++++
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~ 111 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCS 111 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEES
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeC
Confidence 35789998885432 1224789999999998865321 111112334555566655521 1 14678999999
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC--CCCCCCCC
Q psy14484 102 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNS 179 (430)
Q Consensus 102 sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 179 (430)
||++|++.+++++.. +++.|++.+++||++.......+. ....++.+.. +.
T Consensus 112 g~~~al~~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~------ 164 (416)
T 1bw0_A 112 GGSHGILMAITAICD--------AGDYALVPQPGFPHYETVCKAYGI-------------GMHFYNCRPENDWE------ 164 (416)
T ss_dssp HHHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTTE------
T ss_pred ChHHHHHHHHHHhCC--------CCCEEEEcCCCcHhHHHHHHHcCc-------------EEEEeecCcccCCC------
Confidence 999999999998753 568899999999987543332221 1223332111 11
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc----cc
Q psy14484 180 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK----FF 255 (430)
Q Consensus 180 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~----~~ 255 (430)
.|+++|+++++ ++++++++.. ++|++|. .++++++++|.++|++||+++|+||+|+++.+.|. .+
T Consensus 165 ------~d~~~l~~~l~---~~~~~v~i~~-p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 233 (416)
T 1bw0_A 165 ------ADLDEIRRLKD---DKTKLLIVTN-PSNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATF 233 (416)
T ss_dssp ------ECHHHHHHHCC---TTEEEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCC
T ss_pred ------CCHHHHHHHhc---cCCeEEEEeC-CCCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCc
Confidence 17899998885 3566666666 6778885 56789999999999999999999999998765553 21
Q ss_pred -ccccCCCCCc---eeeeecccCC-CccccEEEEEcHH--HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-
Q psy14484 256 -ACEHAEIWPD---FLCLSKGITG-GYLPLSLVMTTDK--IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK- 327 (430)
Q Consensus 256 -~~~~~~~~~d---~~~~sK~l~g-G~~~ig~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~- 327 (430)
.+..++..++ +.++||.++. | +|+|+++++++ +++.+... .+. ....+++.++++++++.++|+....
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~ 309 (416)
T 1bw0_A 234 TSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEG--LKR-VGMLVCGPCTVVQAALGEALLNTPQE 309 (416)
T ss_dssp CCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHH--HHH-HHHHHTCSCHHHHHHHHHHHHSSCHH
T ss_pred cCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHH--HHH-HhccccCCCcHHHHHHHHHHhcccHH
Confidence 2222222222 3478999764 6 79999998763 44433310 000 1224567788988888888873211
Q ss_pred --cCHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----C
Q psy14484 328 --DNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----G 398 (430)
Q Consensus 328 --~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~ 398 (430)
++..++++++.+++.+.|+++ +++....+ .|.++++.+. .........+..+++.|+ ++||.+.++ .
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~ 385 (416)
T 1bw0_A 310 HLDQIVAKIEESAMYLYNHIGEC---IGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAP 385 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS---TTEEECCCCBTTEEEEEEC-GGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC---CCCcccCCCeeEEEEEeCC-HHHcCCCCCHHHHHHHHHHHCCEEEecccccCCC
Confidence 334556677777777777654 44433333 4667776665 311000001356888875 789999885 3
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++|+++. .+++++++++++|.+++++.
T Consensus 386 ~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 386 GFTRLTTT--RPVEVYREAVERIKAFCQRH 413 (416)
T ss_dssp TEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 68999874 78999999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-27 Score=222.17 Aligned_cols=315 Identities=10% Similarity=0.060 Sum_probs=223.9
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
+.+++|||.++ .+++| .+|.+.+++.+.+.... .++.+...++++.+++.++..++++++++|+++++..++
T Consensus 14 ~~~~~i~l~~n--~~~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~ 85 (337)
T 3p1t_A 14 AAAQAVCLAFN--ENPEA-VEPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRIS 85 (337)
T ss_dssp CCCCCEECSSC--CCCSC-CCHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCCceEeeCC--CCCCC-CCHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence 45678999988 56787 68999999998876532 345667789999999999877889999999999999998
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+++ +++.|++.+++|+++....... ......++.+.++.. |++++
T Consensus 86 ~~~----------~gd~vl~~~p~~~~~~~~~~~~-------------g~~~~~v~~~~~~~~------------d~~~l 130 (337)
T 3p1t_A 86 AEF----------SSMRFVTAWPGFDGYRARIAVS-------------GLRHFEIGLTDDLLL------------DPNDL 130 (337)
T ss_dssp HHS----------TTSEEEEESSSCSHHHHHHTTS-------------CCEEEEECBCTTSSB------------CHHHH
T ss_pred Hhc----------CCCeEEEeCCCcHHHHHHHHHc-------------CCEEEEecCCCCCCC------------CHHHH
Confidence 875 2468999999998764432221 122334444332222 77777
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeec
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSK 271 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK 271 (430)
+++ .+++++++.. ++|++|.+.+ ++++.++|+++++ +|+||+|.+|+..+.. .....+....+.++||
T Consensus 131 ~~~-----~~~~~v~i~~-p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK 198 (337)
T 3p1t_A 131 AQV-----SRDDCVVLAN-PSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSK 198 (337)
T ss_dssp TTC-----CTTEEEEEES-SCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSS
T ss_pred Hhh-----cCCCEEEEeC-CCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCch
Confidence 654 2456777777 8889998887 8889999999997 5669999977544321 1111122223447899
Q ss_pred ccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHchh
Q psy14484 272 GIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTSLI 349 (430)
Q Consensus 272 ~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l~ 349 (430)
.++ .| +++|++++++++.+.+.. ...+++.+++++.++.++|+..+ .++..+++.++.+++.+.|+++
T Consensus 199 ~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 268 (337)
T 3p1t_A 199 SYGLAG-LRLGALFGPSELIAAMKR--------KQWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL- 268 (337)
T ss_dssp TTCCTT-TCCEEEECCHHHHHHHHT--------TSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hccCcc-hheEEEEeCHHHHHHHHh--------hcCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 997 56 799999999999888875 23456678888887777775322 1334455666667777777665
Q ss_pred cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 350 THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 350 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
. +...++.|.++++... + ...+.+.|.++||.+.++ ++++|++++ +++++++++++|+++
T Consensus 269 g---~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 269 G---YRVASSEANFVLVENA-A--------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAEY 333 (337)
T ss_dssp T---CCBCCCSSSEEEEECT-T--------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHHH
T ss_pred c---CEECCCCCeEEEEEcC-C--------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHHH
Confidence 2 2233556777776654 3 145778888999999986 378999876 899999999999876
Q ss_pred HH
Q psy14484 425 FN 426 (430)
Q Consensus 425 l~ 426 (430)
++
T Consensus 334 ~~ 335 (337)
T 3p1t_A 334 SD 335 (337)
T ss_dssp TC
T ss_pred hh
Confidence 53
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=233.43 Aligned_cols=329 Identities=9% Similarity=0.078 Sum_probs=227.2
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhcc---c---cccCCCCCHHHHHHHHH-HHhhcCCCCCeEEEcCCchHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---H---VMLSNLTHKPVIKLSEK-LSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~---~~~~~~~~~~~~~l~~~-l~~~~~~~~~~v~~~~sgteA 106 (430)
-.|+|+.+ +.++.+|++.+++.+++.... + .....+..+...++++. +++.++.+ ++++++||++|
T Consensus 9 ~i~ld~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a 81 (371)
T 2e7j_A 9 FINIDPLQ-----TGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREA 81 (371)
T ss_dssp CEECCHHH-----HTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHH
T ss_pred cEEecccc-----cCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHH
Confidence 45666532 345678999999999876532 0 01112345667889999 99999754 99999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC--CCCCCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT--TPDSRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 184 (430)
++.+++++.. +++.|++.+++|++....... .+ .....++ .+.....
T Consensus 82 ~~~~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~-~g------------~~~~~v~~~~~~~~~~---------- 130 (371)
T 2e7j_A 82 KFAVMHSLAK--------KDAWVVMDENCHYSSYVAAER-AG------------LNIALVPKTDYPDYAI---------- 130 (371)
T ss_dssp HHHHHHHHCC--------TTCEEEEETTCCHHHHHHHHH-TT------------CEEEEECCCCTTTCCC----------
T ss_pred HHHHHHHHhC--------CCCEEEEccCcchHHHHHHHH-cC------------CeEEEeecccCCCCCc----------
Confidence 9999998853 668999999999987544222 11 2234454 3222222
Q ss_pred HHHHHHHHHHHHhCC--CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC
Q psy14484 185 RCAIFDLEILLKKNH--NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 185 ~~d~~~le~~l~~~~--~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
|+++|+++++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+.+ ..+ .....+
T Consensus 131 --d~~~l~~~l~~~~~~~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~--~~~~~~-- 198 (371)
T 2e7j_A 131 --TPENFAQTIEETKKRGEVVLALITY-PDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMP--VSLKEI-- 198 (371)
T ss_dssp --CHHHHHHHHHHHTTTSCEEEEEEES-SCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBC--CCHHHH--
T ss_pred --CHHHHHHHHHhhcccCCeEEEEEEC-CCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCC--CChhhc--
Confidence 7899999997531 4688999999 9999998877 899999999999999999999853 222 122222
Q ss_pred CCcee--eeecccCCCccccEEEEEcHHHHHh-hhccCCcccccccC-----CCCCCHHHHHHHHHHHHHHhhcCHHHHH
Q psy14484 263 WPDFL--CLSKGITGGYLPLSLVMTTDKIYNS-IYYKNNINIFLHSH-----SYSGNPLACCAALATLEIFNKDNILQRI 334 (430)
Q Consensus 263 ~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~-~~~~~~~~~~~~~~-----t~~~~~~~~~aa~~~l~~~~~~~~~~~~ 334 (430)
.+|++ +++|.++++ .++|++++++++++. +... ... ... +++.++..++++.++++.+.. .+.+++
T Consensus 199 ~~di~~~s~sK~~~~~-~~~G~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~ 272 (371)
T 2e7j_A 199 GADFIVGSGHKSMAAS-GPIGVMGMKEEWAEIVLRRS--EKY--KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWD 272 (371)
T ss_dssp TCSEEEEEHHHHSSCC-SSCEEEEECTTTTTTTTCBC--SSC--TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHH
T ss_pred CCCEEEecCCcCCCCC-CCcEEEEEechhhhhhcccc--ccC--cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 35666 568999987 499999999988776 6541 000 111 445677777777778877655 566778
Q ss_pred --HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee--------c--CCEEE
Q psy14484 335 --SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--------I--GNTVY 402 (430)
Q Consensus 335 --~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~--------~--~~~lR 402 (430)
+++.+++.+.|+++ ...........+.++++.+. + +.++.+.|.++||.+.+ + .+.+|
T Consensus 273 ~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iR 342 (371)
T 2e7j_A 273 EEVEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHAE-V--------LYEISKKAKGGRFFLYRELKSRKIHGIKPGLTR 342 (371)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEECH-H--------HHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCS
T ss_pred HHHHHHHHHHHHHHHc-CcEEecCCCccCceEEEECC-C--------HHHHHHHHHHCCEEEEeccccccccCCCCCceE
Confidence 88888998888775 32221111114667666553 1 35788888888998765 1 46789
Q ss_pred -EeCCCC-CCHHHHHHHHHHHHHHHHHh
Q psy14484 403 -LMPPYI-LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 -~~~~~~-~t~e~i~~~~~~l~~~l~~~ 428 (430)
++++.. ++++++++++++|+++++++
T Consensus 343 ii~~~~~~~~~~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 343 YFKLSTYGLSDEEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeccCCCHHHHHHHHHHHHHHHHhc
Confidence 999887 99999999999999998763
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=225.22 Aligned_cols=330 Identities=12% Similarity=0.089 Sum_probs=229.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVA 110 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~a 110 (430)
+++.|+|..+. ++.+|++.+++.+++.. ++. ....+..+++++.+++.++.+++ ++++++||++|++.+
T Consensus 32 ~~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 32 VPSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT 101 (393)
T ss_dssp CCCCEECSSSC------CCCCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred CccceeccCCC------CCCCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence 44567775432 35789999998876542 111 11235678899999999987777 899999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCC--cchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHG--ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
++++.. ++++|++.+++||+ +...... .......++.+..... |+
T Consensus 102 ~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~-------------~g~~~~~v~~~~~~~~------------d~ 148 (393)
T 1vjo_A 102 IANAVE--------PGDVVLIGVAGYFGNRLVDMAGR-------------YGADVRTISKPWGEVF------------SL 148 (393)
T ss_dssp HHHHCC--------TTCEEEEEESSHHHHHHHHHHHH-------------TTCEEEEEECCTTCCC------------CH
T ss_pred HHhccC--------CCCEEEEEcCChhHHHHHHHHHH-------------cCCceEEEecCCCCCC------------CH
Confidence 998853 56789999999998 3222111 1122344544432222 88
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC 268 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~ 268 (430)
++|++++++. ++++|++++ ++|++|.+.+ +++|.++|+++|+++|+||+|+ ++... .......+|+++
T Consensus 149 ~~l~~~l~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~----~~~~~~~~di~~ 216 (393)
T 1vjo_A 149 EELRTALETH--RPAILALVH-AETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVP----IFLDAWGVDLAY 216 (393)
T ss_dssp HHHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSC----CCTTTTTCSEEE
T ss_pred HHHHHHHhhC--CceEEEEec-cCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcC----CcccccCccEEE
Confidence 9999999742 567888888 9999998876 8999999999999999999998 65432 222234578886
Q ss_pred ee--cccCCCccccEEEEEcHHHHHhhhcc-CCcccccc------------cCCC-CCCHHHHHHHHHHHHHHhh---cC
Q psy14484 269 LS--KGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLH------------SHSY-SGNPLACCAALATLEIFNK---DN 329 (430)
Q Consensus 269 ~s--K~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~------------~~t~-~~~~~~~~aa~~~l~~~~~---~~ 329 (430)
+| |.++++. ++|++++++++++.+... ....++.+ ..++ +.++++++++.++|+.+.+ ++
T Consensus 217 ~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~ 295 (393)
T 1vjo_A 217 SCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLAN 295 (393)
T ss_dssp CCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHH
T ss_pred EcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHH
Confidence 55 9998874 899999999988776430 00011111 2233 5688888888888887643 35
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEee--cceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEE
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTV 401 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~l 401 (430)
..++++++.+++.+.|+++ ....... .+ .+.++.+.+. .+. . +.++++.|.++ ||.+.++ .+++
T Consensus 296 ~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~~~-~~~--~---~~~~~~~l~~~~gi~v~~g~~~~~~~~i 367 (393)
T 1vjo_A 296 CWQRHQKNVEYLWERLEDI-GLSLHVE-KEYRLPTLTTVCIP-DGV--D---GKAVARRLLNEHNIEVGGGLGELAGKVW 367 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCBSSC-GGGBCSSEEEEECC-TTC--C---HHHHHHHHHHHHCEECEECCGGGTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHc-CCcccCC-ccccCCcEEEEEcC-CCC--C---HHHHHHHHHhhCCEEEecCccccCCCEE
Confidence 6678888888999988876 3332211 11 2345566554 321 1 36789999988 9999875 3789
Q ss_pred EEeC-CCCCCHHHHHHHHHHHHHHH
Q psy14484 402 YLMP-PYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 402 R~~~-~~~~t~e~i~~~~~~l~~~l 425 (430)
|+++ ++..+++++++++++|++++
T Consensus 368 Ris~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 368 RVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp EEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred EEeCCccCChHHHHHHHHHHHHHHh
Confidence 9995 56678888999999998875
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=233.53 Aligned_cols=346 Identities=10% Similarity=0.005 Sum_probs=224.0
Q ss_pred EEeccccccccc-CCCCCHHHHHHHHHHHh--hccccccCCCCCH-HHHHHHHHHHhhcCCCCCeEEEcCCchHHH--HH
Q psy14484 36 YLDAISSWWVNL-FGHSNSYINKALKNQLN--KLEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EV 109 (430)
Q Consensus 36 ~lD~~~~~~~~~-lG~~~p~v~~a~~~~~~--~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~v~~~~sgteA~--~~ 109 (430)
++||..|..... ++ .+|.+++++.+++. ... ....|+.. ...++++.+++.++.++++|++|+|+++++ ..
T Consensus 34 ~i~l~~g~~~~~~~~-~~~~~~~a~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~ 110 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLD-LSNDLLSLPGGDFRTKDGV--DCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDL 110 (422)
T ss_dssp CEECCCCSCCHHHHH-TTGGGGGCSTTCCBCTTCC--BTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHH
T ss_pred eEeCCCCCCChhhCC-CcHHHHHHHHHHHhhccch--hhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHH
Confidence 678877633111 22 34467776655421 110 11123332 256777788887777888999999999997 56
Q ss_pred HHHHHHHhhhhcCCC-----CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 110 ALKMSFHYWYNKGFL-----NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 110 al~~~~~~~~~~g~~-----~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++++.... ..|.. .+++|++.+|+|+++.......+. ....++.... .
T Consensus 111 ~~~~l~~~~-~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~--g---------- 164 (422)
T 3d6k_A 111 ISWSYTWGN-NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-------------EMINVPMTDE--G---------- 164 (422)
T ss_dssp HHHHHHHCC-TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-------------EEEEEEEETT--E----------
T ss_pred HHHHhcCcc-cccccccccCCCCEEEEeCCccHHHHHHHHHcCC-------------EEEecCCCCC--C----------
Confidence 666665310 00000 034799999999988544333221 2223332211 1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCEEEEeccccC--CCCccccc-cc---
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAVG--CGRTGKFF-AC--- 257 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~gi~li~DEv~~g--~g~~g~~~-~~--- 257 (430)
.|+++|++++++ .++++|++.|.++|++| ..++.+.+++|.++|+ +||+++|+||+|.. |...+..+ .+
T Consensus 165 -~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG-~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~ 240 (422)
T 3d6k_A 165 -PDMGVVRELVKD--PQVKGMWTVPVFGNPTG-VTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEF 240 (422)
T ss_dssp -ECHHHHHHHHTS--TTEEEEEECCSSCTTTC-CCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHH
T ss_pred -CCHHHHHHHHhc--CCCeEEEEcCCCCCCCC-CCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhH
Confidence 178999999863 36788886554788888 5678888999999999 99999999999973 65443211 11
Q ss_pred ----ccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----hc
Q psy14484 258 ----EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-----KD 328 (430)
Q Consensus 258 ----~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----~~ 328 (430)
+..+....+.+|||..+.| +|+|++++++++++.+.. .....+++.+++++.++.++|+... -.
T Consensus 241 ~~~~~~~~~~i~~~S~SK~~~~G-lriG~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~ 313 (422)
T 3d6k_A 241 AQAAGNPNRFWFMSSTSKITHAG-SGVSFFASSKENIEWYAS------HANVRGIGPNKLNQLAHAQFFGDVAGLKAHML 313 (422)
T ss_dssp HHHTTCTTCEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH------HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHH
T ss_pred hhccCCCCcEEEEcChhhhcCcc-cceEEEEeCHHHHHHHHH------HHHhhcCCCCHHHHHHHHHHHhCcchHHHHHH
Confidence 1233345566899985557 899999999999887765 3344567788898888887775310 11
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------- 397 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------- 397 (430)
...+.++++.+++.+.|++. ...+.+... +..|.++++.+. .. . ...+.+.|.++||.+.++
T Consensus 314 ~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~-~~---~---~~~~~~~l~~~gV~v~~~g~~f~~~~~ 386 (422)
T 3d6k_A 314 KHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVV-PG---T---ASRVVELAKEAGIALTGAGSSFPLHND 386 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEES-TT---C---HHHHHHHHHHTTEECCCTTTTSGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECC-CC---C---HHHHHHHHHHCCeEEEcCccccCCCCC
Confidence 22344455566666666543 333333322 335677777776 42 1 356788899999999882
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+++||+++. .+++++++++++|++++.++.
T Consensus 387 ~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 387 PNNENIRLAPSL-PPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp TTSCEEEECCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 2589998887 899999999999999988764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=222.08 Aligned_cols=331 Identities=10% Similarity=0.024 Sum_probs=215.8
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
.+++|.++ ..|+.+|++.+++.+++..+. ...+..+..+++++++++.++.+++++++++||++|++.+++++
T Consensus 14 ~~i~l~~~----~~~~~~~~v~~a~~~~~~~~~---~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~ 86 (359)
T 1svv_A 14 KPYSFVND----YSVGMHPKILDLMARDNMTQH---AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA 86 (359)
T ss_dssp -CEECSCS----CSSCCCHHHHHHHHHHTTCCC---CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH
T ss_pred eeEEecCC----CcCCCCHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH
Confidence 46777653 356789999999999876422 23456788899999999999877889999999999999999988
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchh-hhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
+. +++.|++.+++|+++... ... ........++.+ ++.. |+++|++
T Consensus 87 ~~--------~gd~vl~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~-~~~~------------d~~~l~~ 133 (359)
T 1svv_A 87 LR--------PWEAVIATQLGHISTHETGAIE------------ATGHKVVTAPCP-DGKL------------RVADIES 133 (359)
T ss_dssp CC--------TTEEEEEETTSHHHHSSTTHHH------------HTTCCEEEECCT-TSCC------------CHHHHHH
T ss_pred hC--------CCCEEEEcccchHHHHHHHHHh------------cCCCeeEEEeCC-CCee------------cHHHHHH
Confidence 64 567899999999876432 111 112233455443 2222 7899999
Q ss_pred HHHhC----CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC--CCcccccccccCC--CCCc
Q psy14484 194 LLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC--GRTGKFFACEHAE--IWPD 265 (430)
Q Consensus 194 ~l~~~----~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~--g~~g~~~~~~~~~--~~~d 265 (430)
.+++. +.++++|++++ + +++|.+ .+.+++++|.++|++||+++|+||+|.+| +..+.. ....+ ..+|
T Consensus 134 ~l~~~~~~~~~~~~~v~~~~-~-~ptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~~~~~~~~~~d 208 (359)
T 1svv_A 134 ALHENRSEHMVIPKLVYISN-T-TEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVND--LTLADIARLTD 208 (359)
T ss_dssp HHHHSCSTTSCEEEEEEEES-S-CTTSCC-CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCC--CCHHHHHHHCS
T ss_pred HHHHHHhccCCCceEEEEEc-C-CCCcee-cCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcc--hhhhhhhhcCC
Confidence 99753 12488998988 7 567854 55799999999999999999999999544 333221 11111 2367
Q ss_pred eeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14484 266 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 345 (430)
Q Consensus 266 ~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l 345 (430)
+++++..-.|+..++|++++++++++.+... ....+.++........+..+.++....++..++++++.+++.+.|
T Consensus 209 ~~~~s~~K~g~~~~~g~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L 284 (359)
T 1svv_A 209 MFYIGATKAGGMFGEALIILNDALKPNARHL----IKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGL 284 (359)
T ss_dssp EEEEECTTTTCSSCEEEEECSGGGCTTHHHH----HHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCCCceEEEEEcccHHHHHHHH----HhcCCcccccchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 7765432224335678899998887665430 001222333232222222222321001345667788888888888
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEee----cCCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRP----IGNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~----~~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+........ +..+.++++.+. .++.+.|.++ ||.+.+ ..+++|+++++.++++++++++++
T Consensus 285 -~~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 350 (359)
T 1svv_A 285 -EACGIRLAW--PSASNQLFPILE-----------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEV 350 (359)
T ss_dssp -HHTTCCBSS--CCSSSEECBEEE-----------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHH
T ss_pred -ccCCeEEcc--CCccceEEEEcC-----------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHH
Confidence 442332221 223444444433 3688899999 999854 236899999999999999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|+++++++
T Consensus 351 l~~~~~~~ 358 (359)
T 1svv_A 351 LKRLVAST 358 (359)
T ss_dssp HHHC----
T ss_pred HHHHHhcc
Confidence 99988764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=225.18 Aligned_cols=340 Identities=10% Similarity=0.052 Sum_probs=227.7
Q ss_pred ECCCCEEEecccccccccCCCCCHHHHHHHHHHHh--hccccccC------CCCCHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy14484 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLN--KLEHVMLS------NLTHKPVIKLSEKLSSLTQYKLGHCFYGS 101 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~~~~v~~~~ 101 (430)
+.++.-|+|+.++ |+.+|++.+++.+++. ........ ....+...++++++++.++.+++++++++
T Consensus 19 ~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 92 (423)
T 3lvm_A 19 AMKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTS 92 (423)
T ss_dssp -CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEES
T ss_pred ccCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeC
Confidence 4456788887654 4679999999998876 31100000 11235567899999999987778999999
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChh
Q psy14484 102 DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN 181 (430)
Q Consensus 102 sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (430)
||++|++.++++++.+.. ++++.|++.+++|++.......+. ........++.+.....
T Consensus 93 ggt~a~~~a~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~~~------- 151 (423)
T 3lvm_A 93 GATESDNLAIKGAANFYQ----KKGKHIITSKTEHKAVLDTCRQLE----------REGFEVTYLAPQRNGII------- 151 (423)
T ss_dssp SHHHHHHHHHHHHHHHHT----TTCCEEEEETTSCHHHHHHHHHHH----------HTTCEEEEECCCTTSCC-------
T ss_pred ChHHHHHHHHHHHHHhhc----cCCCEEEECCccchHHHHHHHHHH----------HcCCEEEEeccCCCCcc-------
Confidence 999999999998775320 146789999999987643332210 01122344554432222
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCC
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAE 261 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~ 261 (430)
|+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+. +.. ......
T Consensus 152 -----d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~----~~~~~~ 213 (423)
T 3lvm_A 152 -----DLKELEAAMR---DDTILVSIMH-VNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL----PIDLSQ 213 (423)
T ss_dssp -----CHHHHHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS----CCCTTT
T ss_pred -----CHHHHHHhcC---CCcEEEEEeC-CCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC----CcChhh
Confidence 7899999885 5789999999 9999998877 99999999999999999999873 221 122233
Q ss_pred CCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcc-cccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHH
Q psy14484 262 IWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNIN-IFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQ 336 (430)
Q Consensus 262 ~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~ 336 (430)
..+|++++| |.+++ .++|+++++++..+.+...-... ......+.+.++.+++++.++++.++. ++..+++++
T Consensus 214 ~~~di~~~s~sK~~g~--~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 291 (423)
T 3lvm_A 214 LKVDLMSFSGHKIYGP--KGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRG 291 (423)
T ss_dssp SCCSEEEEESTTTTSC--SSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhcCC--CCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888766 96543 35999999987765554300000 000112334567777777777776544 556677778
Q ss_pred HHHHHHHHHHchhcCCCeeeEee----cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------------
Q psy14484 337 DMKKITKALTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------- 397 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------------- 397 (430)
+.+++.+.|+++ +.+..... .+.++.+.+. .. . ...+.+.|.+ +.+.++
T Consensus 292 ~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~ 359 (423)
T 3lvm_A 292 LRNRLWNGIKDI---EEVYLNGDLEHGAPNILNVSFN-YV---E---GESLIMALKD--LAVSSGSACTSASLEPSYVLR 359 (423)
T ss_dssp HHHHHHHHHTTS---TTEEEESCSTTBCTTEEEEEET-TS---C---HHHHHHHTTT--EECBCCCC-----CCCCHHHH
T ss_pred HHHHHHHHHhcC---CCEEEeCCccccCCCeEEEEeC-CC---C---HHHHHHHHhh--heeccCccccCCCccccHHHH
Confidence 888888888655 33322222 1345555554 21 1 2567777766 655543
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|++++..++++++++++++|+++++++
T Consensus 360 ~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~ 399 (423)
T 3lvm_A 360 ALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRL 399 (423)
T ss_dssp HHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999998765
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=228.15 Aligned_cols=343 Identities=10% Similarity=0.008 Sum_probs=222.2
Q ss_pred CCEEEecccccccccCCCCC--HHHHHHHHHHHhhcc-c-cccCCCCCHHHHHHHHHHHhhcC--CCCC--eEEEcCCch
Q psy14484 33 GKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKLE-H-VMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGSDGA 104 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~--~v~~~~sgt 104 (430)
...++||..|.+..+.|+.+ |.|++++.+++.... . +....+..++++.+++.+..... .+++ +|++|+||+
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t 127 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGT 127 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccH
Confidence 45789999987667777765 899999999887622 1 11222334556666666654321 1456 899999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--CCCCCCCCCCChhH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDSRNINKGNSANE 182 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 182 (430)
+|+..++++..... +++.|++.+|+|+++.......+. ....++. +..+..
T Consensus 128 ~al~~~~~~~~~~~------~gd~Vlv~~p~~~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-------- 180 (420)
T 4f4e_A 128 GALKIGADFLRTLN------PKAKVAISDPSWENHRALFDMAGF-------------EVVAYPYYDAKTNGV-------- 180 (420)
T ss_dssp HHHHHHHHHHHHHC------TTCCEEEEESCCHHHHHHHHHTTC-------------CEEEEECEETTTTEE--------
T ss_pred HHHHHHHHHHHHhC------CCCEEEEeCCCcHhHHHHHHHcCC-------------eEEEeeeeccccCcc--------
Confidence 99999977544332 667899999999987544433222 2334444 112222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--cccc-cc
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFAC-EH 259 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~~-~~ 259 (430)
|+++|++.++++++++++++++. ++|++| ..++.+.+++|.++|++||+++|+||+|.++.+.+. .... ..
T Consensus 181 ----d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 254 (420)
T 4f4e_A 181 ----NFDGMLAALNGYEPGTIVVLHAC-CHNPTG-VDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLF 254 (420)
T ss_dssp ----CHHHHHHHHTTCCTTCEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHH
T ss_pred ----CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHH
Confidence 78999999986656788888888 999999 566788899999999999999999999998876531 1111 11
Q ss_pred CCCCC---ceeeeecccC-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH------h
Q psy14484 260 AEIWP---DFLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF------N 326 (430)
Q Consensus 260 ~~~~~---d~~~~sK~l~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~------~ 326 (430)
.+..+ .+.+|||.++ .| +|+|++++ ++++++.+.. .........+.+.+.+++.++.+.++.. +
T Consensus 255 ~~~~~~~i~~~S~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 331 (420)
T 4f4e_A 255 AAANLNVFVSSSFSKSFSLYG-ERVGALSIITDSKDEAARVLS--QLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWV 331 (420)
T ss_dssp HHTTCCEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHH--HHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHH
T ss_pred HhcCCCEEEEEeCCccCcCcC-CCcEEEEEEcCCHHHHHHHHH--HHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHH
Confidence 11222 2347899998 47 89999864 4555443221 0001112344445666666666555421 1
Q ss_pred --hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEE
Q psy14484 327 --KDNILQRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL 403 (430)
Q Consensus 327 --~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~ 403 (430)
-++..++++++.+++.+.|+++...+.+....+ .|.+.++.+. ...+.+.+.++||.+.+++ |+
T Consensus 332 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~l~~~gI~v~~~~---Ri 398 (420)
T 4f4e_A 332 QELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT----------SAQVDRLREEFGIYAVSTG---RI 398 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC----------HHHHHHHHHHHCEECCTTS---EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC----------HHHHHHHHHhCCEEecCCC---eE
Confidence 134556677778888888876521112222223 3444433332 1456667778899998865 88
Q ss_pred eCCCCCCHHHHHHHHHHHHHHH
Q psy14484 404 MPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 404 ~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+++ ..+++++++++++|++++
T Consensus 399 s~~-~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 399 CVA-ALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp EGG-GCCTTTHHHHHHHHHHHH
T ss_pred EEe-cCCHHHHHHHHHHHHHHh
Confidence 876 447778999999998875
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-28 Score=235.38 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=207.9
Q ss_pred HHHHHHHHHHhhcCCCCCeEEEcCCchHHH--HHHHHHHHHhhhhcC------CCCCcEEEEEcCCCCCcchhhhccCCC
Q psy14484 78 PVIKLSEKLSSLTQYKLGHCFYGSDGASAV--EVALKMSFHYWYNKG------FLNKKKFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~~~v~~~~sgteA~--~~al~~~~~~~~~~g------~~~~~~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
...++++.+++.+++++++|++|+|+++++ +.+++++.... .| +.+++.|++.+|+|+++.......+
T Consensus 79 g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~--~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g-- 154 (427)
T 3ppl_A 79 GIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGN--NDSVQPWSKEETVKWICPVPGYDRHFSITERFG-- 154 (427)
T ss_dssp CCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCC--TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTT--
T ss_pred CcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccC--CcccccccCCCCCEEEEcCCCcHHHHHHHHHcC--
Confidence 445777888888787889999999999999 57888766411 00 0016889999999998754433322
Q ss_pred ccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHH
Q psy14484 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR 229 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~ 229 (430)
...+.++.+.. .. |+++|+++++ ..++++|+++|.++|++| ...+.+.+++|.
T Consensus 155 -----------~~~~~v~~~~~--g~-----------d~~~l~~~l~--~~~~~~v~~~p~~~NPtG-~~~~~~~~~~l~ 207 (427)
T 3ppl_A 155 -----------FEMISVPMNED--GP-----------DMDAVEELVK--NPQVKGMWVVPVFSNPTG-FTVTEDVAKRLS 207 (427)
T ss_dssp -----------CEEEEEEEETT--EE-----------CHHHHHHHTT--STTEEEEEECCSSCTTTC-CCCCHHHHHHHH
T ss_pred -----------CEEEEeCCCCC--CC-----------CHHHHHHHHh--cCCCeEEEECCCCCCCCC-ccCCHHHHHHHH
Confidence 12233333221 11 7899999884 357889988864788888 455666799999
Q ss_pred HHH-HhcCCEEEEeccccCCCCcccc---cc-cc------cCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCC
Q psy14484 230 EIC-NNYNIHLIADEIAVGCGRTGKF---FA-CE------HAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 298 (430)
Q Consensus 230 ~l~-~~~gi~li~DEv~~g~g~~g~~---~~-~~------~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~ 298 (430)
++| ++||+++|+||+|+++.+.+.. .. .. ..+....+.+|||.+++| +|+|++++++++++.+..
T Consensus 208 ~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G-~r~G~~~~~~~l~~~~~~--- 283 (427)
T 3ppl_A 208 AMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAG-AGVSFFLTSAENRKWYTG--- 283 (427)
T ss_dssp HCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTT-SSCEEEECCHHHHHHHHH---
T ss_pred HHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcC-ccEEEEEcCHHHHHHHHH---
Confidence 999 9999999999999984333321 11 11 223345566899996667 799999999999888765
Q ss_pred cccccccCCCCCCHHHHHHHHHHHHHH---h--hcCHHHHHHHHHHHHHHHHHc-hhcCCCeee-EeecceEEEEEEeec
Q psy14484 299 INIFLHSHSYSGNPLACCAALATLEIF---N--KDNILQRISQDMKKITKALTS-LITHPKIIN-FRQKGMIWAFDVIIE 371 (430)
Q Consensus 299 ~~~~~~~~t~~~~~~~~~aa~~~l~~~---~--~~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~-~~~~g~~~~~~~~~~ 371 (430)
.....+++.+++++.++.++++.. . .....+.++++.+.+.+.|++ +...+.+.. .+..|.++++.+. .
T Consensus 284 ---~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~-~ 359 (427)
T 3ppl_A 284 ---HAGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV-P 359 (427)
T ss_dssp ---HHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS-T
T ss_pred ---HhhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECC-c
Confidence 334456777888888777766521 1 122334455555566666544 232222222 2334777777776 4
Q ss_pred CCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 372 DPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
. . +..+.+.|.++||.+.++ .+++||+++.. ++++|++++++|.+++.++
T Consensus 360 ~---~---~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 360 G---T---ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp T---C---HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred c---h---HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 2 1 357888999999999882 36899988654 9999999999999998764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=225.40 Aligned_cols=338 Identities=13% Similarity=0.054 Sum_probs=223.2
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
.+.|.+++.+.++...++...++|..++..+. .+++++.++++++.. +.++|++||++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~--------------------~~~~~~~l~~~~~~~-~~v~~~~sgt~a 63 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEV--------------------MNDLLSNLKTVYNAE-AAVIIPGSGTYG 63 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHH--------------------HHHHHHHHHHHHTCS-EEEEEESCHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHH--------------------HHHHHHHHHHHhCCC-CEEEEcCChhHH
Confidence 47889999999888766666677766655433 335566777777655 689999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC----CCCCCCCChhH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS----RNINKGNSANE 182 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 182 (430)
++++++.+ . ++++||+++++||+.......... ....+...++.+.. +...
T Consensus 64 ~~~~~~~~-~--------~gd~vi~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~g~~~~~~~------- 118 (379)
T 3ke3_A 64 MEAVARQL-T--------IDEDCLIIRNGWFSYRWTQILEKG---------KFAKSSTVLTAERTEDTEAPKP------- 118 (379)
T ss_dssp HHHHHHHH-C--------TTCEEEEEECSHHHHHHHHHHHHH---------CCSSEEEEEECEESSCCSSCCC-------
T ss_pred HHHHHHhC-C--------CCCeEEEEeCCchhHHHHHHHHHh---------CCCCceEEEeccccccccccCC-------
Confidence 99988653 2 567899999999986432222100 00012223333210 0000
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
+...|++++++++++ .++++|++.. +++++| ...+.+++++|.++|++||+++|+||+++ | +..+..+.+++
T Consensus 119 ~~~~d~~~l~~~i~~--~~~~~v~~~~-~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~~~~~~~~~~ 190 (379)
T 3ke3_A 119 FAPVDIETAVAKIKE--DKSAIVYAPH-VETSSG-IILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CVWLDMKELGI 190 (379)
T ss_dssp EECCCHHHHHHHHHH--HTCSEEEEES-EETTTT-EECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TCCCCHHHHTC
T ss_pred CCCCCHHHHHHHHhh--cCCcEEEEEe-ecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEEeccc--C--CccccccccCC
Confidence 000288999999963 2466777877 888888 55567899999999999999999999986 3 23344454555
Q ss_pred CCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccc-----------------cCCCCCCHHHHHHHHHHHHHH
Q psy14484 263 WPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-----------------SHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 263 ~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~-----------------~~t~~~~~~~~~aa~~~l~~~ 325 (430)
...+.+++|+++++ .++|++++++++++.+.. ...+++.. ..+++.++.+++++.++|+.+
T Consensus 191 d~~~~s~~K~l~~~-~g~g~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~ 268 (379)
T 3ke3_A 191 DVLISAPQKGWSST-PCAGLVMLSAAAIKKVES-TESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA 268 (379)
T ss_dssp SEEEECTTTTTCSC-CCEEEEEECHHHHHHHHT-CCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CEEEecchhhcCCC-CceEEEEECHHHHHhhhc-CCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 44444556999876 478999999998877654 11112111 112366777777787888877
Q ss_pred hhc---CHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----
Q psy14484 326 NKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---- 397 (430)
Q Consensus 326 ~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---- 397 (430)
+++ +..++.+++.+++++.|+++ ........ ...+.+..+... . .. ..+.+.|.++||.+.++
T Consensus 269 ~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i~~~~~~-~----~~---~~~~~~L~~~Gi~v~~g~~~~ 339 (379)
T 3ke3_A 269 KEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGVVVSYTE-R----DD---MHKGSAFAEAGLQIAAGVPLK 339 (379)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSEEEEECS-C----HH---HHSSHHHHHTTCCCEECCCCS
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceEEEEccC-C----cc---hHHHHHHHHCCeEEeCCcccc
Confidence 653 56677888889999998876 22222111 112233333222 1 11 22367788999988775
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 ------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 ------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
++.+||+++..+|++||++++++|+++++++.
T Consensus 340 ~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 340 VGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp SCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999998764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-26 Score=221.06 Aligned_cols=321 Identities=12% Similarity=0.088 Sum_probs=223.3
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC--CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL--GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.+|++++++.+++... ......+...++++++++.++... +++++++||++|++ +++.+.. +++.
T Consensus 13 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~--------~gd~ 79 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLK--------PNDK 79 (384)
T ss_dssp CCHHHHHHTTCCSCCT----TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCC--------TTCE
T ss_pred CCHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcC--------CCCE
Confidence 4788888887654321 111224567889999999998777 78999999999999 8876643 6788
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
|++.+++||+........ ........++.+..... |+++|++++++ .++++|+++
T Consensus 80 vi~~~~~~~~~~~~~~~~-----------~~g~~~~~v~~~~~~~~------------d~~~l~~~i~~--~~~~~v~~~ 134 (384)
T 3zrp_A 80 ILVVSNGVFGDRWEQIFK-----------RYPVNVKVLRPSPGDYV------------KPGEVEEEVRK--SEYKLVALT 134 (384)
T ss_dssp EEEECSSHHHHHHHHHHT-----------TSSCEEEEECCSTTCCC------------CHHHHHHHHHH--SCEEEEEEE
T ss_pred EEEecCCcchHHHHHHHH-----------HcCCcEEEecCCCCCCC------------CHHHHHHHHHh--CCCcEEEEe
Confidence 999999998753222110 11123345555433222 88999999984 358999999
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
+ ++|++|...+ +++|.++|++||+++|+||+|+ ++.. ..... ...+|++++| |+++|+ .++|+++++
T Consensus 135 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~~ 203 (384)
T 3zrp_A 135 H-VETSTGVREP----VKDVINKIRKYVELIVVDGVSS-VGAE--EVKAE--EWNVDVYLTASQKALGSA-AGLGLLLLS 203 (384)
T ss_dssp S-EETTTTEECC----HHHHHHHHGGGEEEEEEECTTT-TTTS--CCCTT--TTTCSEEEEETTSTTCCC-SSEEEEEEC
T ss_pred C-CCCCCceECc----HHHHHHHHHhcCCEEEEECccc-ccCc--ccccc--ccCCCEEEecCcccccCC-CceEEEEEC
Confidence 9 9999998877 9999999999999999999987 3221 11122 2346777655 999876 579999999
Q ss_pred HHHHHhh-hccCCc------cccc---------ccCCC-CCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHH
Q psy14484 287 DKIYNSI-YYKNNI------NIFL---------HSHSY-SGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 346 (430)
Q Consensus 287 ~~~~~~~-~~~~~~------~~~~---------~~~t~-~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 346 (430)
+++++.+ ...... ..+. ....+ +.+...+.+..++++.+.. ++..++++++.+++.+.|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (384)
T 3zrp_A 204 PKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLE 283 (384)
T ss_dssp HHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 9987766 210000 0000 12222 4466666666677776543 3566778888889988888
Q ss_pred chhcCCCeee--EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC----CEEEEeCCCCCCHHHHHHHHHH
Q psy14484 347 SLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----NTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 347 ~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~----~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
++ ....... ....+.++.+.+. . . . ..++.+.|.++||.+.++. +++|++++..++++++++++++
T Consensus 284 ~~-g~~~~~~~~~~~~~~~~~~~~~-~-~--~---~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~ 355 (384)
T 3zrp_A 284 AL-GLEIVARRPESYSNTVTGVILK-V-A--D---PQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISV 355 (384)
T ss_dssp HT-TCCBSCSSGGGBCSSEEEEECS-S-S--C---HHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHH
T ss_pred HC-CCeEccCcccccCccEEEEECC-C-C--C---HHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHH
Confidence 76 3332211 1123566666665 3 1 1 3679999999999999876 7899999999999999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|++++.++
T Consensus 356 l~~~l~~~ 363 (384)
T 3zrp_A 356 IERTLRKL 363 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=218.47 Aligned_cols=336 Identities=12% Similarity=0.044 Sum_probs=225.6
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhcc-cccc-C---CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVML-S---NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-~---~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~ 109 (430)
.|+|+.++ |+.+|+|++++.+++.... .... . ........++++.+++.++.+++++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57786553 4689999999999887521 1000 0 1113455789999999998777899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++++++.... .+++.|++.+++||+.......+. ........++.+..... |++
T Consensus 77 ~~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~~~------------d~~ 130 (384)
T 1eg5_A 77 ILKTVAETFE----KRKRTIITTPIEHKAVLETMKYLS----------MKGFKVKYVPVDSRGVV------------KLE 130 (384)
T ss_dssp HHHHHHHHTT----TTCCEEEECTTSCHHHHHHHHHHH----------HTTCEEEECCBCTTSCB------------CHH
T ss_pred HHHhhhhhcc----CCCCEEEECCCCchHHHHHHHHHH----------hcCCEEEEEccCCCCcc------------CHH
Confidence 9998873100 056789999999987643321100 01112234443322222 789
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g--i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
+|+++++ +++++|++++ +++++|...+ +++|.++|+++| +++|+||+|+ ++... ..+. ...+|++
T Consensus 131 ~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~ 197 (384)
T 1eg5_A 131 ELEKLVD---EDTFLVSIMA-ANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP--FSLE--KLEVDYA 197 (384)
T ss_dssp HHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC--CCCT--TTCCSEE
T ss_pred HHHHHhC---CCCeEEEEEC-CCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc--cCch--hcCCCEE
Confidence 9998885 4788999998 9999998877 899999999999 9999999997 65321 2222 2347888
Q ss_pred eee--cccCCCccccEEEEEcHHH--HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHH
Q psy14484 268 CLS--KGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKI 341 (430)
Q Consensus 268 ~~s--K~l~gG~~~ig~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l 341 (430)
++| |.++.. .+|++++++++ ...+.. . .......+++.+++++.++.++|+.+.+ ++..++++++.+++
T Consensus 198 ~~s~sK~~g~~--G~G~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 272 (384)
T 1eg5_A 198 SFSAHKFHGPK--GVGITYIRKGVPIRPLIHG--G-GQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKL 272 (384)
T ss_dssp EEEGGGGTSCT--TCEEEEECTTSCCCCSBCS--S-CTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EecHHHhcCCC--ceEEEEEcCCCcccccccc--C-cccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 766 975532 27999999875 222211 0 0001124556788888888888876532 45667777888888
Q ss_pred HHHHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------------------
Q psy14484 342 TKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------------------- 397 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------------------- 397 (430)
.+.|++. ......... ..+.++.+.+. .. . ..++.+.|.++||.+.++
T Consensus 273 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 344 (384)
T 1eg5_A 273 VSGLMNL-GAHIITPLEISLPNTLSVSFP-NI---R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRI 344 (384)
T ss_dssp HHHHHTT-TCEECSCTTSBCTTEEEEECT-TC---C---HHHHHHHHHHTTEECBC------------CHHHHTTCCHHH
T ss_pred HHHhCCC-CeEEeCCcccCCCCEEEEEeC-CC---C---HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhh
Confidence 8888762 211111101 12445555554 21 1 357888999999998873
Q ss_pred -CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+++||+++..++++++++++++|+++++++
T Consensus 345 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 345 AQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp HHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2589999998899999999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=225.25 Aligned_cols=332 Identities=11% Similarity=0.030 Sum_probs=218.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCC-CCHHHHHHHHHHHhh--cC-CCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL-THKPVIKLSEKLSSL--TQ-YKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~-~~~~~~~l~~~l~~~--~~-~~~~~v~~~~sgteA 106 (430)
.|++++||.++. ..++ .+|.+++++.+++...... ....+ +.....++++.+++. .+ .++++|++++|++++
T Consensus 31 ~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 31 PQHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp TTSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred CCCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence 467899998874 3344 6899999999988764221 11122 233345777777777 45 567899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCC-eeEeCCCCCCCCCCCCChhHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK-TYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++.+++++ . +++.|++.+++|+++....... + .. ...++.+......
T Consensus 108 l~~~~~~~-~--------~gd~Vl~~~p~y~~~~~~~~~~-g------------~~~~~~~~~~~~~~~~---------- 155 (400)
T 3asa_A 108 LFRLLSFF-G--------PNQTVAIQDPSYPAYLDIARLT-G------------AKEIIALPCLQENAFF---------- 155 (400)
T ss_dssp HHHHHHHH-C--------SSCEEEEEESCCHHHHHHHHHT-T------------CSEEEEEECCGGGTTC----------
T ss_pred HHHHHHHc-C--------CCCEEEECCCCcHHHHHHHHHc-C------------CcceEecccchhcCcc----------
Confidence 99876543 2 5678999999999875433221 1 11 2333332110000
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc-ccccccCCCCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-FFACEHAEIWP 264 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-~~~~~~~~~~~ 264 (430)
.++ ++ + +++++|++++ ++|++|. .++.+.+++|.++|+++|+++|+||+|+++++.+. ......++..+
T Consensus 156 ~~l---~~-~----~~~~~v~l~~-p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 225 (400)
T 3asa_A 156 PEF---PE-D----THIDILCLCS-PNNPTGT-VLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDAR 225 (400)
T ss_dssp CCC---CT-T----CCCSEEEEES-SCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGG
T ss_pred cCh---hh-c----cCccEEEEeC-CCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCC
Confidence 021 11 1 3566777777 8888885 46788999999999999999999999998865553 12222222112
Q ss_pred c----eeeeecccC-CCccccEEEEEcHHH-------HHhhhccCCcccccccCCC-CCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 265 D----FLCLSKGIT-GGYLPLSLVMTTDKI-------YNSIYYKNNINIFLHSHSY-SGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 265 d----~~~~sK~l~-gG~~~ig~~~~~~~~-------~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
| +.++||.++ +| +|+|++++++++ ++.+.. ..+..++ +.+++++.++.++|+....++..
T Consensus 226 ~~~i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 298 (400)
T 3asa_A 226 FCAIEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWE------RFLSTTFNGASIPAQEAGVAGLSILPQLEAI 298 (400)
T ss_dssp GTEEEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHH------HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHH
T ss_pred CceEEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHH------HHhccCccCCChHHHHHHHHHhCcHHHHHHH
Confidence 3 568999997 57 799999999887 444432 1122334 57888888888888753335567
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeEee-cceEEEEE-EeecCCccchhHHHHHHHHHHH-CCcEEeec-------CCEE
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINFRQ-KGMIWAFD-VIIEDPEQIETFSKKFFVAALK-NELLLRPI-------GNTV 401 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~l 401 (430)
++++++.+++.+.|+++ . +....+ .|.++++. +. .... +.++.+.|++ +||.+.++ .+++
T Consensus 299 ~~~~~~~~~l~~~L~~~-g---~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 299 HYYRENSDLLRKALLAT-G---FEVFGGEHAPYLWVKPTQ-ANIS-----DRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp HHHHHHHHHHHHHHHHT-T---CEEEECSSSSEEEEECCC-TTCC-----TTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred HHHHHHHHHHHHHHHHC-C---CeeeCCCCceEEEEeccC-CCCC-----HHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 78888888888888765 2 222333 46777777 54 3211 1357777765 49999875 3679
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
|++ +..+++++++++++|++++++
T Consensus 369 Ris--~~~~~e~i~~~l~~l~~~~~~ 392 (400)
T 3asa_A 369 RFS--SLGKREDILAACERLQMAPAL 392 (400)
T ss_dssp EEE--CCSCHHHHHHHHHHHHC----
T ss_pred EEE--eeCCHHHHHHHHHHHHHHHHh
Confidence 997 468999999999999988764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=225.92 Aligned_cols=343 Identities=11% Similarity=0.013 Sum_probs=219.1
Q ss_pred CCEEEecccccccccCCCCC--HHHHHHHHH-HHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCC--eEEEcCCc
Q psy14484 33 GKRYLDAISSWWVNLFGHSN--SYINKALKN-QLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGSDG 103 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~--~v~~~~sg 103 (430)
...++||..|++..+.|+.+ |+|++++.+ ++..... +....+..++++++++.+.+... .+++ +|++|+||
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~ 104 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG 104 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCc
Confidence 34689999986656677665 899999999 8765321 11112233455556555544321 1467 89999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--CCCCCCCCCCChh
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--PDSRNINKGNSAN 181 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 181 (430)
++|++.++++..... +++.|++.+++|+++.......+ .....++. ++.+..
T Consensus 105 ~~a~~~~~~~~~~~~------~gd~vl~~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~------- 158 (397)
T 3fsl_A 105 SGALKVGADFLKRYF------PESGVWVSDPTWENHVAIFAGAG-------------FEVSTYPWYDEATNGV------- 158 (397)
T ss_dssp HHHHHHHHHHHHHHC------TTCCEEEESSCCHHHHHHHHHTT-------------CCEEEECCEETTTTEE-------
T ss_pred HHHHHHHHHHHHhcC------CCCeEEEeCCCchhHHHHHHHcC-------------CceEEEeeeeccCCcC-------
Confidence 999999987554332 66789999999998754433322 23344444 122222
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc--ccccc--
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG--KFFAC-- 257 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g--~~~~~-- 257 (430)
|+++|++.++++++++++++++. ++|++| ...+.+.+++|.++|++||+++|+||+|+++...+ .....
T Consensus 159 -----d~~~l~~~l~~~~~~~~~v~~~~-p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 231 (397)
T 3fsl_A 159 -----RFNDLLATLKTLQAGSIVLLHPC-CHNPTG-ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRA 231 (397)
T ss_dssp -----CHHHHHHHHTTCCTTCEEEECSS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHH
T ss_pred -----cHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-cCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHH
Confidence 88999999986545678888888 889999 56677789999999999999999999999886542 11111
Q ss_pred --ccCCCCCceeeeecccC-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH------
Q psy14484 258 --EHAEIWPDFLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF------ 325 (430)
Q Consensus 258 --~~~~~~~d~~~~sK~l~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~------ 325 (430)
...+....+.+|||.++ .| +|+|++++ ++++++.+.. ..+......+...+.+++.++.++++..
T Consensus 232 ~~~~~~~~i~~~S~SK~~~~~G-~riG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 308 (397)
T 3fsl_A 232 IASAGLPALVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLG--QLKATVRRNYSSPPNFGAQVVAAVLNDEALKASW 308 (397)
T ss_dssp HHHTTCCEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHH--HHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHH
T ss_pred HHhcCCCEEEEecccccccCcC-CCeeEEEEecCCHHHHHHHHH--HHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 11222233447899998 47 79999975 4455543322 0001112234444666666665555411
Q ss_pred h--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEE
Q psy14484 326 N--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVY 402 (430)
Q Consensus 326 ~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR 402 (430)
. .++..++++++.+++.+.|+++.....+....+. |.+.++.+. ...+.+.|.++||.+.+++ |
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~gi~v~~g~---R 375 (397)
T 3fsl_A 309 LKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS----------AAQVDRLREEFGVYLIASG---R 375 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC----------HHHHHHHHHTTCEECCTTC---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC----------HHHHHHHHHhCCEEECCCC---e
Confidence 1 1345667777888888888776211022222233 444443332 1456677788899998876 8
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
|+++ .+++++|++++++|++++
T Consensus 376 is~~-~~~~~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 376 MCVA-GLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp EEGG-GCCTTTHHHHHHHHHHHC
T ss_pred EEEE-ecCHhhHHHHHHHHHhhC
Confidence 8875 446778999999998763
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=225.93 Aligned_cols=309 Identities=12% Similarity=0.052 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc--------------EEEEE-cCCCCCc
Q psy14484 77 KPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK--------------KFICL-QNSYHGE 139 (430)
Q Consensus 77 ~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~--------------~vl~~-~~~yhg~ 139 (430)
++++.+++.+.+.+ ++++++|++|+||++|++.++++++. +++ .|++. +++|+++
T Consensus 87 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~--------~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~ 158 (444)
T 3if2_A 87 AFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGG--------AFVNEHSQDKESKSVDKSILLPLTPEYIGY 158 (444)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSE--------EEECC-------CEEEEEEEESSSSCCGGG
T ss_pred HHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhC--------CCccccccccccccccceEEEeCCCCccch
Confidence 45555555555443 45678999999999999999998754 222 46554 8899887
Q ss_pred chhhhccCCCccchhhhhccCCCeeEeCCCC-----CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccC
Q psy14484 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPD-----SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCA 214 (430)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~ 214 (430)
......... +......+..++.+. .+.. |+++|++++++..+++++|+++. ++|+
T Consensus 159 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~------------d~~~l~~~l~~~~~~~~~v~i~~-p~np 218 (444)
T 3if2_A 159 SDVHVEGQH-------FAAVLPHIDEVTHDGEEGFFKYRV------------DFEALENLPALKEGRIGAICCSR-PTNP 218 (444)
T ss_dssp TTCCSSSCC-------EEECCCEEEEEEETTEEEEEEEEC------------CHHHHHTCHHHHTTCEEEEEEES-SCTT
T ss_pred hhcccccch-------hhccCceEEecccccccCccccCC------------CHHHHHHHHHhcCCCceEEEeCC-CCCC
Confidence 543211100 011111222232221 0111 78899888543235788888877 7888
Q ss_pred CCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cc--ccCCCCCceeeeecccCCCccccEEEEEcHHHHH
Q psy14484 215 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC--EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN 291 (430)
Q Consensus 215 ~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~--~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~ 291 (430)
+|. ..+.+.+++|.++|++||+++|+||+|+.+ ..+..+ .. ...+...++.+|||.+.+| +++|++++++++++
T Consensus 219 tG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G-~r~G~~~~~~~l~~ 295 (444)
T 3if2_A 219 TGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGMP-FPNIIYSDAHLNWDNNTILCFSLSKIGLPG-MRTGIIVADAKVIE 295 (444)
T ss_dssp TCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESTTTTCGG-GCCEEEECCHHHHH
T ss_pred CCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCCc-ccccccccccccCCCCEEEEechhhccCCC-CceEEEEECHHHHH
Confidence 885 566777999999999999999999999743 111111 11 1123334566899985557 79999999999988
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEE
Q psy14484 292 SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWA 365 (430)
Q Consensus 292 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~ 365 (430)
.+.. ..+..++..+++++.++.+.++..+ .....+.++++.+.+.+.|++. .........+..|.+++
T Consensus 296 ~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~ 369 (444)
T 3if2_A 296 AVSA------MNAVVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLW 369 (444)
T ss_dssp HHHH------HHHHHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEE
T ss_pred HHHH------HHHhccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEE
Confidence 7765 3344566777888877777665211 1124455666666777777653 33222112234577777
Q ss_pred EEEeecCCccchhHHHHHHHHHHHCCcEEeecC---------------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---------------NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---------------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+.+. .... . ...+++.|.++||.+.++. +++||+++. ++++|++++++|++++.++.
T Consensus 370 ~~~~-~~~~-~---~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~ 441 (444)
T 3if2_A 370 LWFK-DLPI-S---TLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELY 441 (444)
T ss_dssp EEET-TCSS-C---HHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred EEcC-CCCC-C---HHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence 7776 4111 1 3578889999999998741 479999886 99999999999999998764
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-26 Score=220.70 Aligned_cols=334 Identities=11% Similarity=0.070 Sum_probs=221.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
++..|+|+.++. ..+|+|.+++.+++..........+ ..+...++++.+++.++.+++++++++|++++
T Consensus 25 ~~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 25 DGWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVL 98 (406)
T ss_dssp SSCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHH
Confidence 357888876542 4689999999998876321111112 23567889999999998777899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIAR 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 185 (430)
+..+++++.... .+++.|++.+++|++.......+.. .....+..++.+ .+...
T Consensus 99 l~~~~~~l~~~~-----~~gd~vi~~~~~~~~~~~~~~~~~~---------~~g~~v~~v~~~~~~~~~----------- 153 (406)
T 3cai_A 99 LSLLAEASSSRA-----GLGYEVIVSRLDDEANIAPWLRAAH---------RYGAKVKWAEVDIETGEL----------- 153 (406)
T ss_dssp HHHHHHHTGGGG-----BTTCEEEEETTSCGGGTHHHHHHHH---------HHBCEEEEECCCTTTCCC-----------
T ss_pred HHHHHHHHhhcc-----CCCCEEEEcCCccHHHHHHHHHHHH---------hcCCeEEEEecCcccCCc-----------
Confidence 999888652100 1567899999998875332221100 001223445443 22221
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|+++|++.++ +++++|++++ ++|++|.+.+ +++|.++|+++|+++|+||+|+ ++... +....++ +|
T Consensus 154 -d~~~l~~~l~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~~--~d 219 (406)
T 3cai_A 154 -PTWQWESLIS---KSTRLVAVNS-ASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL--LDIRETD--AD 219 (406)
T ss_dssp -CGGGHHHHCC---TTEEEEEEES-BCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC--CCHHHHC--CS
T ss_pred -CHHHHHHHhC---CCceEEEEeC-CcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC--CCchhcC--CC
Confidence 7788888885 5789999999 9999998877 8999999999999999999997 33221 2222233 57
Q ss_pred eee--eecccCCCccccE-EEEEcHHHHHhhhccCCc-c--cccccCCCCCCHHHHHHHHHHHHHHhh------------
Q psy14484 266 FLC--LSKGITGGYLPLS-LVMTTDKIYNSIYYKNNI-N--IFLHSHSYSGNPLACCAALATLEIFNK------------ 327 (430)
Q Consensus 266 ~~~--~sK~l~gG~~~ig-~~~~~~~~~~~~~~~~~~-~--~~~~~~t~~~~~~~~~aa~~~l~~~~~------------ 327 (430)
+++ ++|.++ + ++| ++++++++.+.+...... . ........+.++.+++++.++++.+..
T Consensus 220 ~~~~s~~K~~g-~--~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 296 (406)
T 3cai_A 220 VVTVNAHAWGG-P--PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER 296 (406)
T ss_dssp EEEEEGGGGTS-C--SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred EEEeehhhhcC-C--CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 664 569664 3 389 999999888776541000 0 000011234567777677777776653
Q ss_pred -----cCHHHHHHHHHHHHHHHHHchhcCCCeeeEe---ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-
Q psy14484 328 -----DNILQRISQDMKKITKALTSLITHPKIINFR---QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG- 398 (430)
Q Consensus 328 -----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~- 398 (430)
++..++++++.+++.+.|+++ +.+.... ..+.++.+.+. . . . ..++.+.|.++||.+.++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~-~-~---~--~~~~~~~L~~~gi~v~~g~~ 366 (406)
T 3cai_A 297 LAVSMQSADAYLNRVFDYLMVSLRSL---PLVMLIGRPEAQIPVVSFAVH-K-V---P--ADRVVQRLADNGILAIANTG 366 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECCCCSSBCSEEEEEET-T-B---C--HHHHHHHHHHTTEECEECCS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcC---CCeEEcCCccccCCEEEEEEC-C-c---C--HHHHHHHHHHCCcEEecCCh
Confidence 234455667777777777654 3322111 13446666654 2 1 1 3578889999999988743
Q ss_pred -------------CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 399 -------------NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 399 -------------~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+++|++++..++++++++++++|++
T Consensus 367 ~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 367 SRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999875
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=224.41 Aligned_cols=343 Identities=10% Similarity=0.055 Sum_probs=217.4
Q ss_pred ECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCC-----CHHHHHHHHHHHhhcCCCCCeEEEcCCc
Q psy14484 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLT-----HKPVIKLSEKLSSLTQYKLGHCFYGSDG 103 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~-----~~~~~~l~~~l~~~~~~~~~~v~~~~sg 103 (430)
+.+|+++|||.++. +.-..+|.|.+++.+++...... ....+. .++.+.+++++.+.++..+++|++++|+
T Consensus 52 ~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~ 128 (432)
T 3ei9_A 52 KYPDAQVISLGIGD---TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128 (432)
T ss_dssp HCTTCCCEECSSCC---CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCH
T ss_pred cCCCCCeEEccCCC---CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCCh
Confidence 34678999998873 23347899999999998864321 111222 2344444444443346677899999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHH
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (430)
++++..+ ..+.. +++.|++.+++|+++............+... .....+...++.+.....
T Consensus 129 ~~al~~l-~~l~~--------~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~--------- 189 (432)
T 3ei9_A 129 KCDISRL-QVMFG--------SNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-VQKYGNIEYMRCTPENGF--------- 189 (432)
T ss_dssp HHHHHHH-HHHHC--------TTCCEEEEESCCTHHHHHHHHHTCSCCEETT-TTEETTCEEEECCGGGTT---------
T ss_pred HHHHHHH-HHHcC--------CCCEEEEeCCCCHHHHHHHHHcCCccccccc-ccccCceEEeccCcccCC---------
Confidence 9999874 44333 6788999999999886554433321111100 000012234433311000
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC---
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA--- 260 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~--- 260 (430)
..++++ ..++++++++. ++|++| ..++.+.+++|.++|++||+++|+||+|+++...+....+...
T Consensus 190 ----~~~l~~-----~~~~~~v~l~~-p~NPtG-~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 258 (432)
T 3ei9_A 190 ----FPDLST-----VGRTDIIFFCS-PNNPTG-AAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA 258 (432)
T ss_dssp ----SCCGGG-----CCCCSEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTG
T ss_pred ----cCChhh-----CCCCCEEEEeC-CCCCCC-CCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCC
Confidence 011221 13556666667 788888 5567788999999999999999999999977554432222211
Q ss_pred -CCCCceeeeecccC-CCccccEEEEEcHHH--------HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-H-h-h
Q psy14484 261 -EIWPDFLCLSKGIT-GGYLPLSLVMTTDKI--------YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-F-N-K 327 (430)
Q Consensus 261 -~~~~d~~~~sK~l~-gG~~~ig~~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-~-~-~ 327 (430)
+....+.+|||.++ .| +|+|++++++++ .+.+.. .....+++.+++++.++.+++.. . + .
T Consensus 259 ~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (432)
T 3ei9_A 259 EEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNR------IICTCFNGASNISQAGALACLTPEGLEAM 331 (432)
T ss_dssp GGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHH------HHHHSCCCSCHHHHHHHHHHSSHHHHHHH
T ss_pred CCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHH------HhccccCCCCHHHHHHHHHHHhcccHHHH
Confidence 12233558999998 57 899999999887 555543 22334456788888888887742 1 1 2
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-------C
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------G 398 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-------~ 398 (430)
++..++++++.+++.+.|+++ .. .... ..|.++++.+. .. . ..++++.|+++ ||.+.|+ .
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~---~~~~~~~~~~~~~~~~-~~----~--~~~~~~~ll~~~gv~v~~g~~f~~~~~ 400 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GY---DVYGGKNAPYVWVHFP-NQ----S--SWDVFAEILEKTHVVTTPGSGFGPGGE 400 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TC---CEEECSSSSEEEEECT-TS----C--HHHHHHHHHHHHCEECEEGGGGCGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHC-Cc---eecCCCcceEEEEECC-CC----C--HHHHHHHHHHHCCEEEeCchHhCCCCC
Confidence 445667777888888888765 22 2223 35666666654 21 1 25677777665 9999874 3
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+++|+++ ..++++|++++++|++--
T Consensus 401 ~~iRis~--~~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 401 GFVRVSA--FGHRENILEACRRFKQLY 425 (432)
T ss_dssp TEEEEEC--CSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEe--cCCHHHHHHHHHHHHHHh
Confidence 7899974 669999999999998754
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=224.73 Aligned_cols=344 Identities=10% Similarity=0.010 Sum_probs=218.5
Q ss_pred CCCEEEecccccccccCCC--CCHHHHHHHHH-HHhhccc--cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEE--cCC
Q psy14484 32 SGKRYLDAISSWWVNLFGH--SNSYINKALKN-QLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSD 102 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~--~~s 102 (430)
+|..++||..|......|+ .+|.+.+++.+ .+..... +....+..++++.+++.+.+..+ ..+++|++ |+|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 4677899998865344443 46899999998 7653211 11112223444555555533221 24689999 999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-C-CCCCCCCCCCh
Q psy14484 103 GASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-P-DSRNINKGNSA 180 (430)
Q Consensus 103 gteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ 180 (430)
|++|++.+++++.... +++.|++.+++|+++.......+ .....++. + ..+..
T Consensus 107 ~~~a~~~~~~~~~~~~------~gd~Vl~~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~------ 161 (412)
T 1yaa_A 107 GTGALHISAKFFSKFF------PDKLVYLSKPTWANHMAIFENQG-------------LKTATYPYWANETKSL------ 161 (412)
T ss_dssp HHHHHHHHHHHHHHHC------TTCCEEEEESCCTTHHHHHHTTT-------------CCEEEEECEETTTTEE------
T ss_pred hHhHHHHHHHHHHHhC------CCCEEEEeCCCCccHHHHHHHcC-------------ceEEEEeeecCCCCcc------
Confidence 9999999976655432 56789999999998754433322 22233433 1 11221
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcc---ccccc
Q psy14484 181 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG---KFFAC 257 (430)
Q Consensus 181 ~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g---~~~~~ 257 (430)
|+++|++.+++.+....++++.. ++|++| ..++.+.+++|.++|++||+++|+||+|.++.+.+ ....+
T Consensus 162 ------d~~~l~~~l~~~~~~~~~~~~~~-p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 233 (412)
T 1yaa_A 162 ------DLNGFLNAIQKAPEGSIFVLHSC-AHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAV 233 (412)
T ss_dssp ------CHHHHHHHHHHSCTTCEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHH
T ss_pred ------CHHHHHHHHHhCCCCCEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHH
Confidence 78999999986433355666566 788888 56678889999999999999999999999886543 21122
Q ss_pred -ccCCCCC----c--eeeeecccCC-CccccEEEE--E-----cHH----HHHhhhccCCcccccccCCCCCCHHHHHHH
Q psy14484 258 -EHAEIWP----D--FLCLSKGITG-GYLPLSLVM--T-----TDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAA 318 (430)
Q Consensus 258 -~~~~~~~----d--~~~~sK~l~g-G~~~ig~~~--~-----~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa 318 (430)
......+ + +.++||.++. | +|+|+++ + +++ +++.+.. .....+.+++++++.++
T Consensus 234 ~~~~~~~~~~~~~i~~~s~sK~~~~~G-lriG~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~~~~~a~ 306 (412)
T 1yaa_A 234 RLGVEKLSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAK------IIRSEVSNPPAYGAKIV 306 (412)
T ss_dssp HHHHHHTTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHH------HHHTTTSSCCHHHHHHH
T ss_pred HHHHhcCCCCcceEEEeccCCCCCCcC-CcceEEEEEecCCCCCHHHHHHHHHHHHH------HHhhccCCCChHHHHHH
Confidence 1111123 2 4478999987 7 8999998 7 565 6665543 12233445578888888
Q ss_pred HHHHHHHh--------hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC
Q psy14484 319 LATLEIFN--------KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 390 (430)
Q Consensus 319 ~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 390 (430)
.++|+... .++..++++++.+++.+.|+++.....+....+.+.++.+.-. + ...+.+.+.++
T Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~ 377 (412)
T 1yaa_A 307 AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGL-T--------PQMVKRLEETH 377 (412)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCC-C--------HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCC-C--------HHHHHHHHHhC
Confidence 88876431 2345566777778888888765210012122333444433211 1 13454455578
Q ss_pred CcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 391 ELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 391 Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||.+.+ .+||+++. .+++++++++++|+++++.+
T Consensus 378 gi~v~~---~~Ris~~~-~~~~~i~~~~~~l~~~~~~~ 411 (412)
T 1yaa_A 378 AVYLVA---SGRASIAG-LNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp CEECCT---TSEEEGGG-CCTTTHHHHHHHHHHHHHHC
T ss_pred CEEecc---CcEEEEcc-CCHhHHHHHHHHHHHHHHhh
Confidence 999876 47998874 59999999999999988753
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=217.91 Aligned_cols=340 Identities=10% Similarity=0.059 Sum_probs=227.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhc-ccccc----CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL-EHVML----SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+|..|+|+.+ .|+.+|+|.+++.+++... ..... .....+...++++.+++.++.+++++++++||+++
T Consensus 27 ~~~~yld~~~------~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCC------cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 5778999754 3567899999999998753 11110 01123667899999999998777899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
++.+++.++.... ++. +++++|++++.+|+.......... + .. ........++.
T Consensus 101 l~~al~~~~~~~~-~~~-~gd~vii~~~~~~~~~~~~~~~~~----~-~~-~~g~~~~~v~~------------------ 154 (416)
T 1qz9_A 101 LFKVLSAALRVQA-TRS-PERRVIVTETSNFPTDLYIAEGLA----D-ML-QQGYTLRLVDS------------------ 154 (416)
T ss_dssp HHHHHHHHHHHHH-HHS-TTCCEEEEETTSCHHHHHHHHHHH----H-HH-CSSCEEEEESS------------------
T ss_pred HHHHHHhhccccc-ccC-CCCcEEEEcCCCCCchHHHHHHHH----H-Hh-cCCceEEEeCc------------------
Confidence 9999988763200 001 345566777778875433221000 0 00 00112233332
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 266 (430)
+++|+++++ +++++|++++ +++++|.+.+ +++|.++|++||+++|+||+|+ ++... .....+ .+|+
T Consensus 155 -~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~--~~~~~~--~~d~ 220 (416)
T 1qz9_A 155 -PEELPQAID---QDTAVVMLTH-VNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLHQA--GADY 220 (416)
T ss_dssp -GGGHHHHCS---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSE
T ss_pred -HHHHHHHhC---CCceEEEEec-cccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcC--CChhhc--CCCE
Confidence 356677774 4789999999 9999998877 9999999999999999999997 54332 122222 3687
Q ss_pred eee--ecccCCCcccc-EEEEEcHHHHHhhhccCCccc------------------ccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 267 LCL--SKGITGGYLPL-SLVMTTDKIYNSIYYKNNINI------------------FLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 267 ~~~--sK~l~gG~~~i-g~~~~~~~~~~~~~~~~~~~~------------------~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
+++ +|.+++| .++ |++++++++.+.+... ..+. .......+.++.+++++.++++.+
T Consensus 221 ~~~s~~K~l~~g-~~~~g~l~~~~~~~~~l~~~-~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 298 (416)
T 1qz9_A 221 AIGCTYKYLNGG-PGSQAFVWVSPQLCDLVPQP-LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 298 (416)
T ss_dssp EEECSSSTTCCC-TTCCCEEEECTTTTTTSCCS-CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred EEecCcccCCCC-CCCeEEEEECHHHHhccCCC-ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH
Confidence 766 4998777 577 9999999887665431 0000 000112245777777777888877
Q ss_pred hh---cCHHHHHHHHHHHHHHHHHch-h--cCCCeeeE--eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec
Q psy14484 326 NK---DNILQRISQDMKKITKALTSL-I--THPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI 397 (430)
Q Consensus 326 ~~---~~~~~~~~~~~~~l~~~l~~l-~--~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~ 397 (430)
.+ ++..++++++.+++.+.|+++ . ........ ...+.++++.+. + ...+.+.|.++||.+...
T Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--------~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 299 AQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-E--------GYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-T--------HHHHHHHHHTTTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC-C--------HHHHHHHHHhCCcEeccC
Confidence 54 345677888888888888765 3 22211111 013566666554 2 357899999999988754
Q ss_pred -CCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -GNTVYLMPP-YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|++++ +.++++++++++++|++++.+.
T Consensus 370 ~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 370 EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 589999987 6899999999999999998753
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=222.06 Aligned_cols=308 Identities=12% Similarity=0.040 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHhhc--CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC-CCCcEEEEE-cCCCCCcchhhhccCCCccc
Q psy14484 77 KPVIKLSEKLSSLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF-LNKKKFICL-QNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 77 ~~~~~l~~~l~~~~--~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~-~~~~~vl~~-~~~yhg~~~~~~~~~~~~~~ 152 (430)
++++.+++.+.+.+ +.++++|++|+|+++|++.++++++.. |+ .++..|++. +++||++.........
T Consensus 79 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~----gd~~~~~~vi~~~~p~~~~~~~~~~~~~~---- 150 (417)
T 3g7q_A 79 ALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGR----RADGSTKKVLFPLAPEYIGYADSGLEDDL---- 150 (417)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC--------CCBEEEESSCCCHHHHHC-----CC----
T ss_pred HHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCC----CccCCcceEEEeCCCccccchhhccchhh----
Confidence 44445555554433 456789999999999999999988641 10 011277776 8999987543322111
Q ss_pred hhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
+......+..++... .+.. |+++|+ + .+++++++++. ++|++| ..++.+.+++|.++
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~------------d~~~l~--~---~~~~~~v~~~~-p~NptG-~~~~~~~~~~l~~~ 208 (417)
T 3g7q_A 151 ---FVSARPNIELLPEGQFKYHV------------DFEHLH--I---GEETGMICVSR-PTNPTG-NVITDEELMKLDRL 208 (417)
T ss_dssp ---EEECCCEEEEEGGGEEEEEC------------CGGGCC--C---CTTEEEEEEES-SCTTTC-CCCCHHHHHHHHHH
T ss_pred ---hccccCcccccCCccccccc------------CHHHhc--c---ccCceEEEECC-CCCCCC-CccCHHHHHHHHHH
Confidence 000111111121110 0011 556666 3 35688888887 888898 55667779999999
Q ss_pred HHhcCCEEEEeccccCCCCccccc-cc--ccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFF-AC--EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~-~~--~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|++||+++|+||+|..+ ..+..+ .. ...+....+.+|||...+| +|+|++++++++++.+.. ..+..++
T Consensus 209 a~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G-~r~G~~~~~~~~~~~~~~------~~~~~~~ 280 (417)
T 3g7q_A 209 ANQHNIPLVIDNAYGVP-FPGIIFSEARPLWNPNIILCMSLSKLGLPG-SRCGIIIANDKTITAIAN------MNGIISL 280 (417)
T ss_dssp HHHTTCCEEEECTTCTT-TTCCBCSCCCCCCCTTEEEEEESGGGTCTT-SCCEEEECCHHHHHHHHH------HHHHHCC
T ss_pred HHHcCCEEEEeCCCccc-cccccccccccCCCCCEEEEEechhccCCC-cceEEEEeCHHHHHHHHH------hhcceee
Confidence 99999999999999743 221111 11 1112223366899964456 899999999999888765 3455667
Q ss_pred CCCHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHH
Q psy14484 309 SGNPLACCAALATLEIFN-----KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 382 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~-----~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~ 382 (430)
+++++++.++.+.++... .....++++++.+.+.+.|++. ...+.....+..|.++++.+. .... . ..+
T Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~-~~~~-~---~~~ 355 (417)
T 3g7q_A 281 APGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFK-DLPI-T---TEL 355 (417)
T ss_dssp CCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECT-TCSS-C---HHH
T ss_pred CCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcC-CCCC-C---HHH
Confidence 778888887777775211 0124445566667777777653 332222222445677777765 3111 1 357
Q ss_pred HHHHHHHCCcEEeec--------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 383 FFVAALKNELLLRPI--------------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 383 ~~~~l~~~Gv~~~~~--------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+++.|.++||.+.++ .+++||+++. ++++|++++++|++++.++.
T Consensus 356 l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 356 LYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp HHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHHH
Confidence 888999999999874 2489999874 99999999999999998753
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=217.70 Aligned_cols=319 Identities=9% Similarity=0.093 Sum_probs=209.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-e-EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-H-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~-v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.+|+|++++.+++.. +. .....+...++++++++.++...+ + +++++||++|++.+++.++. +++.
T Consensus 30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~--------~gd~ 97 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFT--------KKDK 97 (376)
T ss_dssp CCHHHHHHHTSCCCC--CS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCC--------TTCC
T ss_pred CcHHHHHHhcCCCCC--CC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccC--------CCCe
Confidence 367888888765421 11 111225667888999999875542 4 55589999999999998764 6678
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
|++.+++|+++...... .........++.+..+.. |+++|+++++ +++++++++
T Consensus 98 vi~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~~l~~~~~---~~~~~v~~~ 151 (376)
T 3f0h_A 98 VLVIDGGSFGHRFVQLC-----------EIHEIPYVALKLEHGKKL------------TKEKLYEYDN---QNFTGLLVN 151 (376)
T ss_dssp EEEEESSHHHHHHHHHH-----------HHTTCCEEEEECCTTCCC------------CHHHHHTTTT---SCCCEEEEE
T ss_pred EEEEeCChhhHHHHHHH-----------HHcCCceEEEeCCCCCCC------------CHHHHHHhhc---cCceEEEEe
Confidence 89888888875422111 011223345555433333 7888888663 578889999
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHH
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~ 288 (430)
+ ++|++|.+.+ +++|.++|++||+++|+||+|+..++. +..+.+++...+.+++|+++++ .++|+++++++
T Consensus 152 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~-~G~g~~~~~~~ 222 (376)
T 3f0h_A 152 V-DETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACP-PGISVIVLAPR 222 (376)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCC-SSCEEEEECHH
T ss_pred c-ccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCC-CceEEEEECHH
Confidence 8 9999998777 999999999999999999999854332 2333344433344566999865 57899999999
Q ss_pred HHHhhhccCCcccc------------cccCCCCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 289 IYNSIYYKNNINIF------------LHSHSYSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 289 ~~~~~~~~~~~~~~------------~~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
+.+.+... ....+ .....++.+..+++++.++++.+.+. ...++.+++.+++.+.|+++ +
T Consensus 223 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~ 298 (376)
T 3f0h_A 223 GVERVEKS-KVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL---P 298 (376)
T ss_dssp HHHHHHTC-CCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS---S
T ss_pred HHHHhhcC-CCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 88777641 11110 01123444555556666777766544 34455556666666666544 2
Q ss_pred Ce-eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 353 KI-INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 353 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.. ........++.+. . .+. . +.++.+.|.++ ||.+.++ ++++|++++..+|++++++++++|++++
T Consensus 299 ~~~~~~~~~~~~~~~~-~-~~~---~--~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l 371 (376)
T 3f0h_A 299 FELVSESPANGVTSVH-P-TTA---N--AYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQ 371 (376)
T ss_dssp EEECCSSBBTTEEEEE-E-SSS---C--HHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred CccCccccCceEEEEe-C-CCC---C--HHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 11 1111223333333 2 211 1 36789999988 9999875 3689999999999999999999999988
Q ss_pred HH
Q psy14484 426 NE 427 (430)
Q Consensus 426 ~~ 427 (430)
++
T Consensus 372 ~~ 373 (376)
T 3f0h_A 372 KR 373 (376)
T ss_dssp HT
T ss_pred Hh
Confidence 75
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=220.60 Aligned_cols=322 Identities=13% Similarity=0.123 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~v 129 (430)
.+|++++++.+++.. +. .....+...++++++++.++...+ ++++++||++|++.+++.+.. ++++|
T Consensus 34 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~--------~gd~v 101 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIG--HM--QKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLE--------PGDSF 101 (393)
T ss_dssp CCHHHHHHTTCCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCC--------TTCEE
T ss_pred CCHHHHHHhcccccC--cc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCC--------CCCEE
Confidence 478888888764321 11 011235667889999999875554 599999999999999998753 67788
Q ss_pred EEEcCCCCCcch-hhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 130 ICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 130 l~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
++..++|++... ...... ......++.+..... |+++|++++++ .++++|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~------------g~~~~~~~~~~~~~~------------d~~~l~~~i~~--~~~~~v~~~ 155 (393)
T 3kgw_A 102 LTGTNGIWGMRAAEIADRI------------GARVHQMIKKPGEHY------------TLQEVEEGLAQ--HKPVLLFLV 155 (393)
T ss_dssp EEEESSHHHHHHHHHHHHT------------TCEEEEEECCTTCCC------------CHHHHHHHHHH--HCCSEEEEE
T ss_pred EEEeCCchhHHHHHHHHHc------------CCceEEEeCCCCCCC------------CHHHHHHHHhh--CCCcEEEEe
Confidence 888888765421 111111 123344444432222 88999999974 267888999
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
+ ++|++|...+ +++|.++|++||+++|+||+|+ ++. ..+..+.+ .+|++++| |+++|+ .++|+++++
T Consensus 156 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g~--~~~~~~~~--~~d~~~~s~sK~~~~~-~g~g~~~~~ 224 (393)
T 3kgw_A 156 H-GESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LGG--VPIYMDQQ--GIDIMYSSSQKVLNAP-PGISLISFN 224 (393)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TTT--SCCCTTTT--TCCEEEEESSSTTCCC-SSCEEEEEC
T ss_pred c-cCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-ccC--cccchhhc--CCCEEEecCcccccCC-CceeEEEEC
Confidence 9 9999998777 8899999999999999999987 321 12222222 35776655 999776 579999999
Q ss_pred HHHHHhhhccCC-cccc----------------cccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHH
Q psy14484 287 DKIYNSIYYKNN-INIF----------------LHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 346 (430)
Q Consensus 287 ~~~~~~~~~~~~-~~~~----------------~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 346 (430)
+++++.+..... ...+ ....+++.+..+++++.++++.+.+ ++..++++++.+++.+.|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 304 (393)
T 3kgw_A 225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQ 304 (393)
T ss_dssp HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999887754100 0000 0112344577777777788876654 4567788888889999888
Q ss_pred chhcCCCee-e-EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeC-CCCCCHHHHHHH
Q psy14484 347 SLITHPKII-N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 417 (430)
Q Consensus 347 ~l~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~-~~~~t~e~i~~~ 417 (430)
++ ...... . ....+.++++.+. .+.. +.++.+.|+++ ||.+.++ ++++|+++ ++..++++++++
T Consensus 305 ~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~ 377 (393)
T 3kgw_A 305 EM-GLKFFVKDPEIRLPTITTVTVP-AGYN-----WRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRV 377 (393)
T ss_dssp HT-TCCBSSSSGGGBCSSEEEEECC-TTBC-----HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHH
T ss_pred Hc-CCeeccCChhhcCCeEEEEeCC-CCCC-----HHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHH
Confidence 76 332211 1 1223455566654 3211 36789999888 9999874 47999998 666799999999
Q ss_pred HHHHHHHHHHh
Q psy14484 418 TSAIFQTFNEV 428 (430)
Q Consensus 418 ~~~l~~~l~~~ 428 (430)
+++|+++++++
T Consensus 378 ~~~l~~~l~~~ 388 (393)
T 3kgw_A 378 AEALREALQHC 388 (393)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=216.13 Aligned_cols=332 Identities=15% Similarity=0.181 Sum_probs=223.7
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCC---CeEEEcCCchHHHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSDGASAVEVALK 112 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~v~~~~sgteA~~~al~ 112 (430)
++||..| +++ .+|+|++++.+++ .+.. ..+.++...++++.+++.++ .+ +++++++||++|++.+++
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~---~~~~-~~~~~~~~~~l~~~la~~~g-~~~~~~~v~~~~g~t~a~~~~~~ 74 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDS---CTWD-DDYNIGVVEQIRQQLTALAT-ASEGYTSVLLQGSGSYAVEAVLG 74 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCC---CTTS-HHHHTTTHHHHHHHHHHHHC-SSSSEEEEEEESCHHHHHHHHHH
T ss_pred cccccCC----CcC-CCHHHHHHHhhhh---cCCC-HHHHHHHHHHHHHHHHHHhC-CCCcCcEEEEecChHHHHHHHHH
Confidence 5677665 343 7899999988742 1110 00111456788888888886 33 479999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+++. +++.|+++++.||+....... .........++.+..... |+++|+
T Consensus 75 ~~~~--------~gd~vi~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~~l~ 123 (366)
T 1m32_A 75 SALG--------PQDKVLIVSNGAYGARMVEMA-----------GLMGIAHHAYDCGEVARP------------DVQAID 123 (366)
T ss_dssp HSCC--------TTCCEEEEESSHHHHHHHHHH-----------HHHTCCEEEEECCTTSCC------------CHHHHH
T ss_pred HhcC--------CCCeEEEEeCCCccHHHHHHH-----------HHhCCceEEEeCCCCCCC------------CHHHHH
Confidence 8753 456788888777764221111 011123344544332222 889999
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--ee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LS 270 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~s 270 (430)
+++++. .+++++++.. +++++|.+.+ +++|.++|++||+++|+||+|+ ++..+ +.+. ...+|+++ ++
T Consensus 124 ~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~--~~~~--~~~~di~~~s~~ 192 (366)
T 1m32_A 124 AILNAD-PTISHIAMVH-SETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP--MDIA--ALHIDYLISSAN 192 (366)
T ss_dssp HHHHHC-TTCCEEEEES-EETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCTT--TTTCSEEEEESS
T ss_pred HHHhcC-CCeEEEEEec-ccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcC--cccc--ccCccEEEecCc
Confidence 999863 2456666666 7788897777 9999999999999999999997 43332 1222 23467774 67
Q ss_pred cccCCCccccEEEEEcHHHHHhhhccCCccccc--------------ccCCCCCCHHHHHHHHHHHHHHhhc----CHHH
Q psy14484 271 KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL--------------HSHSYSGNPLACCAALATLEIFNKD----NILQ 332 (430)
Q Consensus 271 K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~~~~aa~~~l~~~~~~----~~~~ 332 (430)
|+++++ .++|++++++++++.+... ..++. ....++.++.+++++.++++.+... ...+
T Consensus 193 K~~~~~-~g~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 269 (366)
T 1m32_A 193 KCIQGV-PGFAFVIAREQKLAACKGH--SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQ 269 (366)
T ss_dssp STTCCC-SSEEEEEEEHHHHTTCTTC--CSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccCC-CceEEEEECHHHHHhhcCC--CCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHH
Confidence 998776 4789999999988766541 11110 0113567888888888888866443 3667
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----CCEEEEeCCC
Q psy14484 333 RISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GNTVYLMPPY 407 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----~~~lR~~~~~ 407 (430)
+++++.+++.+.|+++ ........ ...+.++++.+. +... .. +.++.+.|.++||.+.++ .+++|++++.
T Consensus 270 ~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~ 344 (366)
T 1m32_A 270 RYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSP-EDPQ-YR--FSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIG 344 (366)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC-CCTT-CC--HHHHHHHHHHTTEECEECCCSSSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHC-CCeeccCchhcCceEEEEEcC-ccCC-CC--HHHHHHHHHHCCEEEECCcCCCCCEEEEecCC
Confidence 7888888888888776 33322111 123557777765 3100 11 367999999999999875 3789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
.++++++++++++|++++.+
T Consensus 345 ~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 345 EVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp SCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988754
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=220.95 Aligned_cols=322 Identities=11% Similarity=0.072 Sum_probs=219.9
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCe-EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~v 129 (430)
.+|++.+++.+++. .+. .....+...++++++++.++...++ +++++||++|++.+++.+.. ++++|
T Consensus 24 ~~~~v~~a~~~~~~--~~~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~--------~gd~V 91 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI--GQY--DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIR--------PGDKV 91 (411)
T ss_dssp CCHHHHHHHTSCCC--CTT--CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCC--------TTCEE
T ss_pred CCHHHHHHhhcccc--ccc--cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcC--------CCCEE
Confidence 46888888776431 111 0111255678899999999766665 78889999999999998853 67899
Q ss_pred EEEcCCCCCcch-hhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 130 ICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 130 l~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
++.+++||+... ..... .......++.+..... |+++|++++++ .++++|+++
T Consensus 92 l~~~~~~~~~~~~~~~~~------------~g~~~~~v~~~~~~~~------------d~~~l~~~i~~--~~~~~v~~~ 145 (411)
T 3nnk_A 92 LVPVFGRFGHLLCEIARR------------CRAEVHTIEVPWGEVF------------TPDQVEDAVKR--IRPRLLLTV 145 (411)
T ss_dssp EEEECSHHHHHHHHHHHH------------TTCEEEEEECCTTCCC------------CHHHHHHHHHH--HCCSEEEEE
T ss_pred EEecCCchHHHHHHHHHH------------cCCeEEEEecCCCCCC------------CHHHHHHHHhh--CCCeEEEEe
Confidence 999999987421 11111 1123345555433332 88999999974 267889999
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~ 286 (430)
+ ++|++|.+.+ +++|.++|++||+++|+||+++ ++.. .+..... .+|+++ ++|+++++ .++|+++++
T Consensus 146 ~-~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~--~~~~~~~--~~d~~~~s~~K~l~~~-~g~g~~~~~ 214 (411)
T 3nnk_A 146 Q-GDTSTTMLQP----LAELGEICRRYDALFYTDATAS-LGGN--PLETDVW--GLDAVSAGMQKCLGGP-SGTSPITLS 214 (411)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-BTTB--CCCTTTT--TCSEEECCSTTTTCCC-SSEEEEEEC
T ss_pred C-CCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cCCc--ccchhcc--CCcEEEecCccccCCC-CceEEEEEC
Confidence 9 9999998877 8899999999999999999986 3221 1222223 356665 55887776 589999999
Q ss_pred HHHHHhhhccCCcccc------------------------------cccCCCCCCHHHHHHHHHHHHHHhhc---CHHHH
Q psy14484 287 DKIYNSIYYKNNINIF------------------------------LHSHSYSGNPLACCAALATLEIFNKD---NILQR 333 (430)
Q Consensus 287 ~~~~~~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~ 333 (430)
+++.+.+.......+. ......+.+..+++++.++++.+.+. +..++
T Consensus 215 ~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 294 (411)
T 3nnk_A 215 ARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIAR 294 (411)
T ss_dssp HHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9988776541000000 00122344677777777778765443 56677
Q ss_pred HHHHHHHHHHHHHchhcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeC-
Q psy14484 334 ISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP- 405 (430)
Q Consensus 334 ~~~~~~~l~~~l~~l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~- 405 (430)
++++.+++.+.|+++ ...... .....+.++.+.+. .+.. +.++.+.|+++ ||.+.++ ++++|+++
T Consensus 295 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~ 367 (411)
T 3nnk_A 295 HKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIP-QGIN-----GDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTM 367 (411)
T ss_dssp HHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECC-TTCC-----HHHHHHHHHHHHSEEEEECCGGGTTTEEEEECC
T ss_pred HHHHHHHHHHHHHHc-CCEeCCCcccccccEEEEECC-CCCC-----HHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCc
Confidence 888888998888876 222221 11224566777664 3211 36788888877 9999874 47999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++.++++++++++++|+++++++
T Consensus 368 ~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 368 GYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHHHHHHHHHHHc
Confidence 77789999999999999998764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=216.03 Aligned_cols=336 Identities=11% Similarity=0.048 Sum_probs=227.1
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
...|+|..+ .++.+|++++++.+++.. + ......+...++++.+++.++.+++++++++||++|+..+++
T Consensus 8 ~~~yl~~~~------~~~~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~ 77 (392)
T 2z9v_A 8 DPVITLTAG------PVNAYPEVLRGLGRTVLY--D--YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAA 77 (392)
T ss_dssp CCSEECSSS------CCCCCHHHHHHTTSCCCC--T--TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHH
T ss_pred CcceeecCC------CcCCCHHHHHHHhccccc--c--ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHH
Confidence 346777543 235789999998876543 1 101123456789999999998777899999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
++.. +++.|++.+++||+....... .........++.+..... |+++|+
T Consensus 78 ~~~~--------~gd~Vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~~l~ 126 (392)
T 2z9v_A 78 SLIS--------PDDVVLNLASGVYGKGFGYWA-----------KRYSPHLLEIEVPYNEAI------------DPQAVA 126 (392)
T ss_dssp HHCC--------TTCCEEEEESSHHHHHHHHHH-----------HHHCSCEEEEECCTTSCC------------CHHHHH
T ss_pred HhcC--------CCCEEEEecCCcccHHHHHHH-----------HHcCCceEEeeCCCCCCC------------CHHHHH
Confidence 8743 567899999999876311110 001123345554432222 889999
Q ss_pred HHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--ee
Q psy14484 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LS 270 (430)
Q Consensus 193 ~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~s 270 (430)
+++++. +++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+|+ ++.. .+.... ..+|+++ ++
T Consensus 127 ~~l~~~-~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~--~~~~~~--~~~d~~~~s~s 195 (392)
T 2z9v_A 127 DMLKAH-PEITVVSVCH-HDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGM--KTHPED--CKADIYVTGPN 195 (392)
T ss_dssp HHHHHC-TTCCEEEEES-EEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTB--SCCGGG--GTCSEEEECSS
T ss_pred HHHhcC-CCCcEEEEec-cCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCc--cccccc--ccceEEEecCc
Confidence 999652 3577888888 9999998877 8999999999999999999997 4322 122222 2467765 56
Q ss_pred cccCCCccccEEEEEcHHHHHhhhccCC-c-----------cc--ccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHH
Q psy14484 271 KGITGGYLPLSLVMTTDKIYNSIYYKNN-I-----------NI--FLHSHSYSGNPLACCAALATLEIFNK---DNILQR 333 (430)
Q Consensus 271 K~l~gG~~~ig~~~~~~~~~~~~~~~~~-~-----------~~--~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~ 333 (430)
|.++++ .++|++++++++++.+..... . .. .......+.+..+++++.++++.+.+ +...++
T Consensus 196 K~~~~~-~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~ 274 (392)
T 2z9v_A 196 KCLGAP-PGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWAR 274 (392)
T ss_dssp STTCCC-SCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccccCC-CceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 988775 467999999998776643000 0 00 00112234466666667777776543 345677
Q ss_pred HHHHHHHHHHHHHchhcCCCee-e-EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeC
Q psy14484 334 ISQDMKKITKALTSLITHPKII-N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP 405 (430)
Q Consensus 334 ~~~~~~~l~~~l~~l~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~ 405 (430)
++++.+++.+.|+++ ...... . ....+.++.+.+. .+.. +.++.+.|.++ ||.+.++ .+.+|+++
T Consensus 275 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~ 347 (392)
T 2z9v_A 275 HALTAKAMRAGVTAM-GLSVWAASDSIASPTTTAVRTP-DGVD-----EKALRQAARARYGVVFSSGRGETLGKLTRIGH 347 (392)
T ss_dssp HHHHHHHHHHHHHHT-TCCBSSSSGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCEECEECCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHc-CCeeccCCccccCCceEEEECC-CCCC-----HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeC
Confidence 888888888888775 333221 1 0124566666664 3211 35789999988 9999875 47899996
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHh
Q psy14484 406 PY-ILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~-~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.. .++++++++++++|+++++++
T Consensus 348 ~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 348 MGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHHHHHHHHc
Confidence 44 889999999999999998764
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=217.04 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=205.9
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~~a 110 (430)
.+++||.++. +.++ .+|++.+++.+++..... ..++.....++++.+++.++ .++++|++++|+++|++.+
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~ 92 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDAL---RIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVM 92 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGG---GSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhh---hcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHH
Confidence 4688988874 4565 689999999988733211 12222235677777777776 6778999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++ ++.|++. ++||++.......+ .....++.+..+.. |+++
T Consensus 93 ~~~~-----------gd~Vl~~-p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~ 135 (335)
T 1uu1_A 93 MLMF-----------DRSVFFP-PTYSCYRIFAKAVG-------------AKFLEVPLTKDLRI------------PEVN 135 (335)
T ss_dssp HHHS-----------SEEEECS-SSCHHHHHHHHHHT-------------CEEEECCCCTTSCC------------CCCC
T ss_pred HHHh-----------CCcEEEC-CCcHHHHHHHHHcC-------------CeEEEeccCCCCCC------------CHHH
Confidence 8876 2578888 99998754332211 12223333221111 3343
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCCCCCceeee
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAEIWPDFLCL 269 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~~~~d~~~~ 269 (430)
| +++++|++.. ++|++|.+. +.+.+++|.+.| | ++|+||+|+++... .... .+..+....+.++
T Consensus 136 l--------~~~~~v~l~~-p~nptG~~~-~~~~l~~l~~~~---~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~ 200 (335)
T 1uu1_A 136 V--------GEGDVVFIPN-PNNPTGHVF-EREEIERILKTG---A-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTF 200 (335)
T ss_dssp C--------CTTEEEEEES-SCTTTCCCC-CHHHHHHHHHTT---C-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEES
T ss_pred c--------CCCCEEEEeC-CCCCCCCCC-CHHHHHHHHHhC---C-EEEEECcchhhcch-hHHHHhhhCCCEEEEecc
Confidence 3 2456666555 567888555 545555555544 8 89999999976432 2111 1222223445689
Q ss_pred ecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHc
Q psy14484 270 SKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKALTS 347 (430)
Q Consensus 270 sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~ 347 (430)
||.++ .| +|+|++++++++++.+.. ...+++.+++++.++.++|+..+ .++..++++++.+++.+.|++
T Consensus 201 sK~~g~~G-~r~G~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 271 (335)
T 1uu1_A 201 SKAFSLAA-QRVGYVVASEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE 271 (335)
T ss_dssp TTTTTCGG-GCCEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcc-cCeEEEEeCHHHHHHHHH--------hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 56 799999999999888765 22456788998888888887432 234566777788888888876
Q ss_pred hhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 348 LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 348 l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
+ ... ..+..|.++++.+. . .. ..++.+.|.++||.+.+..+++|++++ +++++++++++|+++
T Consensus 272 ~-g~~---~~~~~~~~~~~~~~-~----~~--~~~~~~~l~~~gi~v~~~~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 272 M-GYR---ITDSRGNFVFVFME-K----EE--KERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp H-TCC---BCCCCSSEEEEECC-T----HH--HHHHHHHHHHHTEEEEEETTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred C-CcE---EcCCCCeEEEEECC-C----CC--HHHHHHHHHHCCEEEEECCCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 5 222 12445677766655 2 11 357889999999999998889999875 578899999998754
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=226.12 Aligned_cols=349 Identities=12% Similarity=0.118 Sum_probs=232.5
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc----ccC--CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV----MLS--NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~----~~~--~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+..|+|. +.+|..++.+.+++.+++...... ... ....+..+++++++++.+++++++|++++|++++
T Consensus 67 ~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 4567763 457877888888888877554321 111 1223455678899999998888899999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
++.+++.+... | ..+++||+.++.||+..............+... ..+...+.+..+..
T Consensus 141 l~~~~~~~~~~----~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~----~~v~~~~~~~~~~~------------ 199 (465)
T 3e9k_A 141 LHLLMLSFFKP----T-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE----SMRMIKPREGEETL------------ 199 (465)
T ss_dssp HHHHHHHHCCC----C-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH----HEEEECCCTTCSSC------------
T ss_pred HHHHHHHhccc----c-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee----eeEEEecCCCCCcc------------
Confidence 99999887542 1 145679999999987543221110000000000 00112233322222
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 266 (430)
|+++|+++++++.+++++|++++ ++|++|.+.+ +++|.++|++||+++|+|++|+ .+... .....+ ..|+
T Consensus 200 d~~~l~~~i~~~~~~~~lv~~~~-~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~-~g~~~--~~~~~~--~~D~ 269 (465)
T 3e9k_A 200 RIEDILEVIEKEGDSIAVILFSG-VHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA-VGNVE--LYLHDW--GVDF 269 (465)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC--CCHHHH--TCCE
T ss_pred CHHHHHHHHHhcCCCeEEEEEeC-cccCcceeec----HHHHHHHHHHcCCEEEEEhhhh-cCCcC--Cchhhc--CCCE
Confidence 78999999986545799999999 9999998887 9999999999999999999987 43221 222222 3566
Q ss_pred ee--eecccCCCccccEEEEEcHHHHHhhhccCCcc--------ccccc------------CCCCCCHHHHHHHHHHHHH
Q psy14484 267 LC--LSKGITGGYLPLSLVMTTDKIYNSIYYKNNIN--------IFLHS------------HSYSGNPLACCAALATLEI 324 (430)
Q Consensus 267 ~~--~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~--------~~~~~------------~t~~~~~~~~~aa~~~l~~ 324 (430)
++ ++|.+.+|..++|++++++++.+.+.+. ..+ .+... ...+.+.+++++..++++.
T Consensus 270 ~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~ 348 (465)
T 3e9k_A 270 ACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPA-LVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI 348 (465)
T ss_dssp EEECSSSTTCCCTTCCCEEEECGGGTTTSCCS-SCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred EEECcccccccCCCceEEEEEcHHHHhhcCCc-ccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH
Confidence 64 5599965435689999999887655431 000 00000 0114567777777778876
Q ss_pred Hhh---cCHHHHHHHHHHHHHHHHHchh-c------CCCeee-----EeecceEEEEEEeecCCccchhHHHHHHHHHHH
Q psy14484 325 FNK---DNILQRISQDMKKITKALTSLI-T------HPKIIN-----FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK 389 (430)
Q Consensus 325 ~~~---~~~~~~~~~~~~~l~~~l~~l~-~------~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 389 (430)
+++ +++.++.+++.+++.+.|+++. . .+++.- ....|.++.+.+. .+ ...+.+.|.+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~-------~~~l~~~L~~ 420 (465)
T 3e9k_A 349 FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VP-------NKDVFQELEK 420 (465)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CT-------TCCHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CC-------HHHHHHHHHH
Confidence 654 4567778888888888887641 0 022221 1224788888765 32 1358889999
Q ss_pred CCcEEeec-CCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 390 NELLLRPI-GNTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 390 ~Gv~~~~~-~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+||.+... ++++||++ ++.++++++++++++|++++++
T Consensus 421 ~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 421 RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 99998765 48999999 8999999999999999998864
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=211.31 Aligned_cols=333 Identities=11% Similarity=-0.013 Sum_probs=220.6
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCC-----CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSN-----LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
|+|+.++ +..+|++.+++.+++.+........ ...+...++++++++.++.+++++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6776554 3468999999999887632111111 1235567899999999987778999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++...... +++.|++.++.|++......... ........++.+..... |+++
T Consensus 77 ~~~~~~~~~~----~gd~vi~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~~~------------d~~~ 130 (382)
T 4hvk_A 77 IIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQ----------KQGFEVEYIPVGKYGEV------------DVSF 130 (382)
T ss_dssp HHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHH----------HTTCEEEEECBCTTSCB------------CHHH
T ss_pred HHHhhhhhcC----CCCEEEECCCCcHHHHHHHHHHH----------hcCCEEEEeccCCCCCc------------CHHH
Confidence 9987631100 56789998888887643322210 01123345554433322 8899
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC-- 268 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~-- 268 (430)
|+++++ +++++|++++ ++|++|...+ +++|.++|++||+ +|+||+|+ ++.. .+..... .+|+++
T Consensus 131 l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~-~~~~--~~~~~~~--~~d~~~~s 196 (382)
T 4hvk_A 131 IDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS-VGQI--EVDVEKI--GADMLTIS 196 (382)
T ss_dssp HHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT-BTTB--CCCHHHH--TCSEEEEE
T ss_pred HHHHhc---cCceEEEEEC-CCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh-cCCC--CCCchhc--CCCEEEEe
Confidence 999885 5789999999 9999998877 9999999999999 99999986 3221 1122222 356665
Q ss_pred eecccCCCccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGITGGYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL 345 (430)
Q Consensus 269 ~sK~l~gG~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l 345 (430)
++|.++. .++|+++++++. .+...- .........+.+.+..++.++.++++.+.+ ++..++++++.+++.+.|
T Consensus 197 ~~K~~g~--~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 272 (382)
T 4hvk_A 197 SNDIYGP--KGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNV 272 (382)
T ss_dssp SGGGTSC--TTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC--CceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5596443 358999888764 121100 000000112334466777777777765443 456677777888888887
Q ss_pred HchhcCCCeeeEe----ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------
Q psy14484 346 TSLITHPKIINFR----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 397 (430)
Q Consensus 346 ~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------ 397 (430)
+++ +.+.... ..+.++.+.+. .. . ...+.+.|.++||.+.++
T Consensus 273 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (382)
T 4hvk_A 273 LKI---EESYLNGHPEKRLPNNVNVRFS-YI---E---GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEA 342 (382)
T ss_dssp TTS---TTEEECSCSSSBCTTEEEEEET-TC---C---HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHH
T ss_pred hcC---CCeEEeCCccccCCCEEEEEEC-CC---C---HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhc
Confidence 754 3322111 11345555554 21 1 357889999999998864
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|++++..++++++++++++|++++.++
T Consensus 343 ~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~ 373 (382)
T 4hvk_A 343 HGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp HTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998765
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=209.06 Aligned_cols=333 Identities=11% Similarity=0.004 Sum_probs=219.5
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCC-----CHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-----HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
|+|+.++ |+.+|+|++++.+++..........+. .+...++++.+++.++.+++++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6786654 467999999999988753111111121 24668899999999987777999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
++++..+... +++.|++.+++|++.......... .....+.++.+..... |+++
T Consensus 77 ~~~l~~~~~~----~gd~Vl~~~~~~~~~~~~~~~~~~----------~g~~~~~v~~~~~~~~------------d~~~ 130 (382)
T 4eb5_A 77 IIGYAMRNAR----KGKHILVSAVEHMSVINPAKFLQK----------QGFEVEYIPVGKYGEV------------DVSF 130 (382)
T ss_dssp HHHHHHHHGG----GCCEEEEETTCCHHHHHHHHHHTT----------TTCEEEEECBCTTSCB------------CHHH
T ss_pred HHHHHhhccC----CCCEEEECCCcchHHHHHHHHHHh----------CCcEEEEeccCCCCcc------------CHHH
Confidence 9988721100 567899999998876333221110 1122344544332222 7899
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC-- 268 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~-- 268 (430)
|+++++ +++++|++++ ++|++|...+ +++|.++|++||++ |+||+|+ ++... .....+ .+|+++
T Consensus 131 l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~--~~~~~~--~~di~~~s 196 (382)
T 4eb5_A 131 IDQKLR---DDTILVSVQH-ANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE--VDVEKI--GADMLTIS 196 (382)
T ss_dssp HHHHCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC--CCHHHH--TCSEEEEE
T ss_pred HHHHhc---CCCeEEEEec-cCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc--cCcccc--CCCEEEee
Confidence 998885 4688899998 9999998877 89999999999999 9999997 54321 122222 357665
Q ss_pred eecccCCCccccEEEEEcHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL 345 (430)
Q Consensus 269 ~sK~l~gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l 345 (430)
++|.++. .++|+++++++. +..+.. +... .......+.+...+.++.++++.+.+ +...++++++.+++.+.|
T Consensus 197 ~sK~~g~--~g~G~~~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 272 (382)
T 4eb5_A 197 SNDIYGP--KGVGALWIRKEAKLQPVIL-GGGQ-ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNV 272 (382)
T ss_dssp TGGGTCC--SSCEEEEEETTCCCCCSSC-SSCT-GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhcCC--CceEEEEEccccccCceec-CCCc-cccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5696442 248999988763 211111 0000 00112234466666666677776543 345566777777787777
Q ss_pred HchhcCCCeeeEee----cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------
Q psy14484 346 TSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 397 (430)
Q Consensus 346 ~~l~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------ 397 (430)
+++ +.+..... .+.++.+.+. .. . ..++.+.|.++||.+.++
T Consensus 273 ~~~---~~~~~~~~~~~~~~~~~~~~~~-~~----~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 342 (382)
T 4eb5_A 273 LKI---EESYLNGHPEKRLPNNVNVRFS-YI----E--GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEA 342 (382)
T ss_dssp TTS---TTEEECSCSSSBCTTEEEEEET-TS----C--HHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHH
T ss_pred hhC---CCeEEeCCcccCCCCEEEEEeC-Cc----C--HHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhcc
Confidence 654 33222211 2556666654 21 1 357888898999998764
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+|++++..++++++++++++|++++.++
T Consensus 343 ~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 373 (382)
T 4eb5_A 343 HGTLLLTLGRYNTDEDVDRLLEVLPGVIERL 373 (382)
T ss_dssp TTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3689999998899999999999999988754
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=215.10 Aligned_cols=337 Identities=12% Similarity=0.104 Sum_probs=223.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEV 109 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~ 109 (430)
.+|+.|+|..+. ++ .+|++++++.+++.. +. .....+...++++.+++.++.+.+ ++++++||++|++.
T Consensus 16 ~~~~~~~~~~g~-----~~-~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~ 85 (393)
T 2huf_A 16 VTPNKLLMGPGP-----SN-APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEA 85 (393)
T ss_dssp CCCCCEECSSSC-----CC-CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred CCCCeEEecCCC-----CC-CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 456777664432 22 579999988776532 11 112345678999999999987665 89999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++++.. +++.|++.+++||+....... .......+.++.+..... |++
T Consensus 86 ~~~~~~~--------~gd~vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~ 134 (393)
T 2huf_A 86 TLCNLLE--------DGDVILIGHTGHWGDRSADMA-----------TRYGADVRVVKSKVGQSL------------SLD 134 (393)
T ss_dssp HHHHHCC--------TTCEEEEEESSHHHHHHHHHH-----------HHTTCEEEEEECCTTCCC------------CHH
T ss_pred HHHHHhC--------CCCEEEEECCCcchHHHHHHH-----------HHcCCeeEEEeCCCCCCC------------CHH
Confidence 9998743 567899999999874211110 001122344444332222 789
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~ 269 (430)
+|++++++. ++++|++++ ++|++|.+.+ +++|.++|++||+++|+||+++ ++.. ..... ...+|++++
T Consensus 135 ~l~~~i~~~--~~~~v~~~~-~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~ 202 (393)
T 2huf_A 135 EIRDALLIH--KPSVLFLTQ-GDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMD--RWEIDAMYT 202 (393)
T ss_dssp HHHHHHHHH--CCSEEEEES-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCSEEEC
T ss_pred HHHHHHhcc--CCcEEEEEc-cCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchh--hcCccEEEE
Confidence 999999741 567788888 8999998777 8999999999999999999986 4432 12222 234677754
Q ss_pred --ecccCCCccccEEEEEcHHHHHhhhccCC-ccccc---------------ccCCC-CCCHHHHHHHHHHHHHHhh---
Q psy14484 270 --SKGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFL---------------HSHSY-SGNPLACCAALATLEIFNK--- 327 (430)
Q Consensus 270 --sK~l~gG~~~ig~~~~~~~~~~~~~~~~~-~~~~~---------------~~~t~-~~~~~~~~aa~~~l~~~~~--- 327 (430)
+|+++|+ .++|++++++++++.+..... ..++. ...++ +.+..+++++.++++.+.+
T Consensus 203 s~sK~l~g~-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 203 GSQKVLGAP-PGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp CSSSTTCCC-SSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcccccC-CCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 5988764 356999999998887754100 01111 01122 3455666666667776543
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEe-ecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCE
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFR-QKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 400 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~ 400 (430)
++..++++++.+++.+.|+++ ......... ..+.++.+.+. .+.. +.++.+.|.++ ||.+.++ .++
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~L~~~~gi~v~~g~~~~~~~~ 354 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA-GFELYADPKDRLSTVTTIKVP-QGVD-----WLKAAQYAMKTYLVEISGGLGPTAGQV 354 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCEECBCCCGGGTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCeeccCccccCCcEEEEEcC-CCCC-----HHHHHHHHHHhCCEEEecCcccccCCE
Confidence 345677888888888888776 333221111 12346666654 3211 35788888865 9999874 378
Q ss_pred EEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 401 VYLMP-PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|+++ ++..+++++++++++|+++++++
T Consensus 355 ~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~ 383 (393)
T 2huf_A 355 FRIGLMGQNATTERVDRVLQVFQEAVAAV 383 (393)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcccCcCCHHHHHHHHHHHHHHHHHc
Confidence 99999 55568999999999999998764
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=213.11 Aligned_cols=319 Identities=13% Similarity=0.016 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
.+|++++++.+++.. + ......+...++++.+++.++.+++++++++||++|++.+++.+.. ++++|+
T Consensus 12 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~--------~gd~vl 79 (352)
T 1iug_A 12 LHPKALEALARPQLH--H--RTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------PGERVL 79 (352)
T ss_dssp CCHHHHHHHHSCCCC--T--TSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------TTCEEE
T ss_pred CCHHHHHHhccCCCC--c--cCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccC--------CCCeEE
Confidence 579999998876542 1 1111224567899999999987777999999999999999998753 567899
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
+.+++|++....... .........++.+..... |+++|++ +++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~~l~~------~~~~~v~~~~- 129 (352)
T 1iug_A 80 VPVYGKFSERFYEIA-----------LEAGLVVERLDYPYGDTP------------RPEDVAK------EGYAGLLLVH- 129 (352)
T ss_dssp EEECSHHHHHHHHHH-----------HHTTCEEEEEECCTTCCC------------CTTTSCC------SSCSEEEEES-
T ss_pred EEeCCchhHHHHHHH-----------HHcCCceEEEeCCCCCCC------------CHHHHhc------cCCcEEEEEE-
Confidence 999999886411110 001122344444332211 4555544 3467788888
Q ss_pred cccCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEEEEc
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTT 286 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~ 286 (430)
++|++|.+.+ +++|.++|++| |+++|+||+|+ ++.. .+....+ .+|+++ ++|++.++ .++|+++++
T Consensus 130 ~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~ 199 (352)
T 1iug_A 130 SETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCP-PGLGFVALS 199 (352)
T ss_dssp EETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCC-SCEEEEEEC
T ss_pred ecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCc--ceecccc--CeeEEEecCcccccCC-CceeEEEEC
Confidence 9999998877 99999999999 99999999996 4332 1222222 367665 55977765 468999999
Q ss_pred HHHHHhhhcc------C-Ccccc-cccCCCCCCHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHchhcCCCeee
Q psy14484 287 DKIYNSIYYK------N-NINIF-LHSHSYSGNPLACCAALATLEIFNKD--NILQRISQDMKKITKALTSLITHPKIIN 356 (430)
Q Consensus 287 ~~~~~~~~~~------~-~~~~~-~~~~t~~~~~~~~~aa~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 356 (430)
+++++.+... . ..... ....+++.+..++.++.++++.+++. +..++++++.+++.+.|+++ .......
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 278 (352)
T 1iug_A 200 PRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPK 278 (352)
T ss_dssp HHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCS
T ss_pred HHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccccc
Confidence 9876542100 0 00000 01223455777777777888876543 45667777888888888765 2221111
Q ss_pred EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 357 FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 357 ~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
...+.++++.+. .+.. +.++.+.|.++||.+.++ .+++|++++..++++++++++++|++++.+++
T Consensus 279 -~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 349 (352)
T 1iug_A 279 -RFSPAVAAFYLP-EGVP-----YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 349 (352)
T ss_dssp -SBCTTCEEEECC-TTCC-----HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -ccCCeEEEEEcC-CCCC-----HHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHhc
Confidence 024667777665 3211 367899999999999875 37899999988999999999999999998764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=217.68 Aligned_cols=330 Identities=10% Similarity=0.034 Sum_probs=218.8
Q ss_pred cCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEE-EcCCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 47 LFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCF-YGSDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 47 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~-~~~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
.++.+++.+.+++.+++.+...........+...++++++++.++...+.++ +++||++|++.+++.+.. +
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~--------~ 85 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIE--------P 85 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCC--------T
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcC--------C
Confidence 3555554555555555544221111112235678899999999987777665 889999999999997743 6
Q ss_pred CcEEEEEcCCCCCcchh-hhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEE
Q psy14484 126 KKKFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAA 204 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 204 (430)
++.|++.+++||+.... ..... ......++.+..... |+++|++++++ +++++
T Consensus 86 gd~Vl~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~------------d~~~l~~~i~~--~~~~~ 139 (416)
T 3isl_A 86 EDDVLIPIYGRFGYLLTEIAERY------------GANVHMLECEWGTVF------------DPEDIIREIKK--VKPKI 139 (416)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHT------------TCEEEEEECCTTCCC------------CHHHHHHHHHH--HCCSE
T ss_pred CCEEEEecCCcccHHHHHHHHhc------------CCeeEEEecCCCCCC------------CHHHHHHHHhh--CCCcE
Confidence 78999999999873211 11111 123345555433322 88999999974 25688
Q ss_pred EEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCccccEE
Q psy14484 205 IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSL 282 (430)
Q Consensus 205 vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~ 282 (430)
|++++ ++|++|...+ +++|.++|++||+++|+||+|+ ++.. ..... ...+|++++ +|++.++ .++|+
T Consensus 140 v~~~~-~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~l~g~-~g~g~ 208 (416)
T 3isl_A 140 VAMVH-GETSTGRIHP----LKAIGEACRTEDALFIVDAVAT-IGGC--EVKVD--EWKIDAAIGGTQKCLSVP-SGMAP 208 (416)
T ss_dssp EEEES-EETTTTEECC----CHHHHHHHHHTTCEEEEECTTT-TTTS--CCCTT--TTTCSEEECCSSSTTCCC-SSEEE
T ss_pred EEEEc-cCCCCceecC----HHHHHHHHHHcCCEEEEECCcc-ccCC--Ccchh--hcCCCEEEecCccccCCC-CCeEE
Confidence 88888 9999998877 9999999999999999999987 3322 11222 234677754 5887776 57999
Q ss_pred EEEcHHHHHhhhccC-------------------Ccc-------------cccccCCCCCCHHHHHHHHHHHHHHhh---
Q psy14484 283 VMTTDKIYNSIYYKN-------------------NIN-------------IFLHSHSYSGNPLACCAALATLEIFNK--- 327 (430)
Q Consensus 283 ~~~~~~~~~~~~~~~-------------------~~~-------------~~~~~~t~~~~~~~~~aa~~~l~~~~~--- 327 (430)
+++++++++.+.... ... ........+.+..++.++.++++.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (416)
T 3isl_A 209 ITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGL 288 (416)
T ss_dssp EEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred EEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 999999887765300 000 000111224466777777777776544
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCE
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNT 400 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~ 400 (430)
++..++++++.+++.+.|+++ ........ ...+.++.+.+. .+.. +.++.+.|.++ ||.+.++ +++
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l~~~L~~~~gi~v~~g~~~~~~~~ 361 (416)
T 3isl_A 289 ETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCVEIP-GGID-----GESVRDMLLAQFGIEIASSFGPLAGKI 361 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCEECBCCCSTTTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEEeCC-CCCC-----HHHHHHHHHHhCCEEEecCCCCCCCCE
Confidence 356777888888888888875 33222111 122566667664 3211 36789999887 9999864 479
Q ss_pred EEEeCCCCCCHHH-HHHHHHHHHHHHHHh
Q psy14484 401 VYLMPPYILNKNE-IQHMTSAIFQTFNEV 428 (430)
Q Consensus 401 lR~~~~~~~t~e~-i~~~~~~l~~~l~~~ 428 (430)
+|++++...++++ +++++++|++++.++
T Consensus 362 iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 362 WRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred EEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 9999977777766 999999999998764
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=215.21 Aligned_cols=358 Identities=9% Similarity=0.060 Sum_probs=212.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
.++..|||+.++. +.+|++++++.+++..........+ ..+...++++++++.++.+++++++++||++
T Consensus 16 ~~~~~~Ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~ 89 (432)
T 3a9z_A 16 PNRKVYMDYNATT------PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTE 89 (432)
T ss_dssp --CCEECBTTTCC------CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHH
T ss_pred CCCcEEeeCCccC------CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHH
Confidence 4677889876542 5789999999998876321111112 1234578999999999877789999999999
Q ss_pred HHHHHHHHHHHhhhh-cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhc----cCCCeeEeCCCC-CCCCCCCCC
Q psy14484 106 AVEVALKMSFHYWYN-KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTS----LLNKTYIITTPD-SRNINKGNS 179 (430)
Q Consensus 106 A~~~al~~~~~~~~~-~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~ 179 (430)
|++.+++.++..... ..+ +++.|+++.|+||++.........+......+.. ...++..++.+. +...
T Consensus 90 a~~~~~~~~~~~~~~~~~~-~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~----- 163 (432)
T 3a9z_A 90 SNNLVIHSTVRCFHEQQTL-QGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQV----- 163 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHH-C------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSC-----
T ss_pred HHHHHHHHHHhhhhhcccc-CCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCc-----
Confidence 999999987521000 000 4578999999999863221111111111111111 123445555442 2222
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC----------CEEEEeccccCCC
Q psy14484 180 ANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN----------IHLIADEIAVGCG 249 (430)
Q Consensus 180 ~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g----------i~li~DEv~~g~g 249 (430)
|+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|+++| +++|+||+|. ++
T Consensus 164 -------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~-~~ 227 (432)
T 3a9z_A 164 -------EVEDILAAVR---PTTCLVTIML-ANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQA-LG 227 (432)
T ss_dssp -------CHHHHHHTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTT-TT
T ss_pred -------CHHHHHHhcc---CCceEEEEEC-cccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhh-hC
Confidence 7889988885 4689999999 9999998887 899999999999 9999999995 54
Q ss_pred CcccccccccCCCCCceee--eecccCCCccccEEEEEcHHH-HHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHH
Q psy14484 250 RTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLVMTTDKI-YNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIF 325 (430)
Q Consensus 250 ~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~-~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~ 325 (430)
... .... ...+|+++ ++|.+ | .++|+++++++. ...+...- .........+++.++.+++++.++++.+
T Consensus 228 ~~~--~~~~--~~~~d~~~~s~~K~~--g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~ 300 (432)
T 3a9z_A 228 KRR--VDVE--DLGVDFLTIVGHKFY--G-PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV 300 (432)
T ss_dssp TSC--CCHH--HHCCSEEEEEGGGTT--C-CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH
T ss_pred Ccc--cChh--hcCCCEEEEehhHhc--C-CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH
Confidence 321 1111 22467765 58975 3 469999999765 22222100 0000011223456777777777788765
Q ss_pred hh--cCHHHHHHHHHHHHHHHHHchhcCCCe--e---eEeecceEEEEEEeecCCccchhHHHHHHHHHH----HCCcEE
Q psy14484 326 NK--DNILQRISQDMKKITKALTSLITHPKI--I---NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL----KNELLL 394 (430)
Q Consensus 326 ~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~--~---~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~----~~Gv~~ 394 (430)
++ ++..++++++.+++.+.|+++...... . .....+.+..+.+. .... . ...+.+.+. +.|+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~i~~~~G~~~ 375 (432)
T 3a9z_A 301 SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQ-GSQL-R---GYMVLAQCQTLLASVGASC 375 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEEC-STTC-C---HHHHHHHCSSEECBSSCGG
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeC-CCCC-c---HHHHHHHhcCeEEeccccc
Confidence 43 456677888888888888775221111 0 01233556667666 4111 1 133444331 112211
Q ss_pred ee-------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 395 RP-------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 395 ~~-------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+ ..+++||+++..+|++++++++++|++++.++
T Consensus 376 ~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~ 428 (432)
T 3a9z_A 376 HSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQL 428 (432)
T ss_dssp GGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 23789999999999999999999999998764
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=214.06 Aligned_cols=320 Identities=11% Similarity=0.067 Sum_probs=216.4
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC--CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.+|+|++++.+++.. + ......+...++++++++.++.+ .+++++++||++|+..+++.++ + ++
T Consensus 11 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---------~-d~ 76 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--H--LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD---------R-GP 76 (353)
T ss_dssp CCHHHHGGGGSCCCC--T--TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS---------C-CC
T ss_pred CCHHHHHHHhccccc--c--cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc---------C-Cc
Confidence 578999988876543 1 10112245788999999999754 5789999999999999988663 4 67
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
|++.+++||++...... .........++.+..... |+++|++.++++ ++++|+++
T Consensus 77 vl~~~~~~~~~~~~~~~-----------~~~g~~~~~v~~~~~~~~------------d~~~l~~~l~~~--~~~~v~~~ 131 (353)
T 2yrr_A 77 VLVLVNGAFSQRVAEMA-----------ALHGLDPEVLDFPPGEPV------------DPEAVARALKRR--RYRMVALV 131 (353)
T ss_dssp EEEEECSHHHHHHHHHH-----------HHTTCCEEEEECCTTSCC------------CHHHHHHHHHHS--CCSEEEEE
T ss_pred EEEEcCCCchHHHHHHH-----------HHcCCceEEEeCCCCCCC------------CHHHHHHHHHhC--CCCEEEEE
Confidence 89989888875111000 011223345555432222 889999999742 56788888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~~~~~ 286 (430)
+ ++|++|...+ +++|.++|++||+++|+||+|+ ++... .....+ .+|++++ +|.++++ .++|+++++
T Consensus 132 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~~-~~~~~--~~~~~~--~~d~~~~s~~K~~~~~-~g~G~~~~~ 200 (353)
T 2yrr_A 132 H-GETSTGVLNP----AEAIGALAKEAGALFFLDAVTT-LGMLP--FSMRAM--GVDYAFTGSQKCLSAP-PGLAPIAAS 200 (353)
T ss_dssp S-EETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHHHH--TCSEEECCTTSTTCCC-SSCEEEEEC
T ss_pred c-cCCCcceecC----HHHHHHHHHHcCCeEEEEcCcc-ccccc--cccccc--CceEEEecCcccccCC-CceEEEEEC
Confidence 8 9999998877 8999999999999999999995 65432 222222 3577764 5988765 368999999
Q ss_pred HHHHHhhhc-cCCc-------ccc-cccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 287 DKIYNSIYY-KNNI-------NIF-LHSHSYSGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 287 ~~~~~~~~~-~~~~-------~~~-~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
+++++.+.. .+.. ... .....++.+..++.++.++++.+.+. +..++++++.+++.+.|+++ .....
T Consensus 201 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 279 (353)
T 2yrr_A 201 LEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPY 279 (353)
T ss_dssp HHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEES
T ss_pred HHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 998876641 0000 000 01123345677777777778766433 45677788888888888765 32221
Q ss_pred eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHH-HHHHHHHHHHHH
Q psy14484 355 INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQ-HMTSAIFQTFNE 427 (430)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~-~~~~~l~~~l~~ 427 (430)
......+.++++.+. .+.. +.++.+.|.++||.+.++ ++.+|++++...++++++ +++++|++++++
T Consensus 280 ~~~~~~~~~~~~~~~-~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 280 PKASPLPTVLVVRPP-EGVD-----ADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp CSSSBCTTEEEEECC-TTCC-----HHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred cCccCCCeEEEEECC-CCCC-----HHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 111113555566654 3211 367999999999999875 378999998888999999 999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=212.98 Aligned_cols=325 Identities=13% Similarity=0.114 Sum_probs=205.7
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
..++||.++ ..++.+|++++++.+++.. + .......+...++++++++.++ ...++++++||++|++.++++
T Consensus 7 ~~~id~~~~----~~~~~~~~v~~a~~~~~~~--~-~~~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSD----NIAGASPEVAQALVKHSSG--Q-AGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCG----GGCCCCHHHHHHHHHTTSS--C-CCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccC----CccCCCHHHHHHHHhhccC--c-ccccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHH
Confidence 468899876 3457899999999987532 1 1223346778899999999997 444599999999999999998
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcchhh--hccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETLGA--LAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
++. +++.|++.+++| +..... ..... .......++.+ +.. .|+++|
T Consensus 79 ~~~--------~gd~vi~~~~~~-~~~~~~~~~~~~~----------~g~~~~~v~~~-~~~------------~d~~~l 126 (356)
T 1v72_A 79 MTP--------PWGNIYCHPASH-INNDECGAPEFFS----------NGAKLMTVDGP-AAK------------LDIVRL 126 (356)
T ss_dssp SCC--------TTEEEEECTTSH-HHHSSTTHHHHHT----------TSCEEEECCCG-GGC------------CCHHHH
T ss_pred hcC--------CCCEEEEcCccc-hhhhhchHHHHHh----------CCcEEEEecCC-CCe------------EcHHHH
Confidence 653 456777766544 332211 11110 01122333322 111 178999
Q ss_pred HH-HHHhC----CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC--cccccccccCC--C
Q psy14484 192 EI-LLKKN----HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR--TGKFFACEHAE--I 262 (430)
Q Consensus 192 e~-~l~~~----~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~--~g~~~~~~~~~--~ 262 (430)
++ ++++. ..++++|++++ +++ +| ..++.+.+++|.++|++||+++|+||+|..+.. .|. .....+ .
T Consensus 127 ~~~~i~~~~~~~~~~~~~v~~~~-~~~-tG-~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~ 201 (356)
T 1v72_A 127 RERTREKVGDVHTTQPACVSITQ-ATE-VG-SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--SPAEMTWKA 201 (356)
T ss_dssp HHHTTSSTTCTTSCEEEEEEEES-SCT-TS-CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--CTTTTTGGG
T ss_pred HHHhhhcchhhccCCceEEEEEc-CCC-CC-ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--CHHHhhhhh
Confidence 98 88631 12689999998 765 77 567889999999999999999999999863211 111 111111 1
Q ss_pred CCceee--eecccCCCccccE--EEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHHH
Q psy14484 263 WPDFLC--LSKGITGGYLPLS--LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRIS 335 (430)
Q Consensus 263 ~~d~~~--~sK~l~gG~~~ig--~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~~ 335 (430)
..|+++ ++|. | .|+| ++++++++++.+.. .+ .+.++.... +..++.++++.++++ +..++.+
T Consensus 202 ~~d~~~~s~sK~---g-~~~G~g~~~~~~~~~~~~~~---~~--~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 270 (356)
T 1v72_A 202 GVDALSFGATKN---G-VLAAEAIVLFNTSLATEMSY---RR--KRAGHLSSK--MRFLSAQIDAYLTDDLWLRNARKAN 270 (356)
T ss_dssp TCCEEEECCGGG---T-CSSCEEEEESSGGGHHHHHH---HH--HHTTCCCSS--THHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred cCCEEEEecccC---C-CcCccEEEEECHHHHhhHHH---Hh--hccCchhhh--HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345554 6687 3 3666 77778888776543 00 011222211 122233344444332 2345667
Q ss_pred HHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCH
Q psy14484 336 QDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNK 411 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~ 411 (430)
++.+++.+.|+++ +++... +..+.++++.+. .++++.|.++||.+.++ ++++|+++++.+++
T Consensus 271 ~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~ 336 (356)
T 1v72_A 271 AAAQRLAQGLEGL---GGVEVLGGTEANILFCRLD-----------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTA 336 (356)
T ss_dssp HHHHHHHHHHTTC---TTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCH
T ss_pred HHHHHHHHHHhhC---CCcEEccCCCccEEEEEcC-----------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCH
Confidence 7777777777654 333222 334555555544 35888899999999864 47899999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14484 412 NEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~~ 428 (430)
+++++++++|++++++.
T Consensus 337 ~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 337 EDVDHLLNQVRLAADRT 353 (356)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887653
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=217.33 Aligned_cols=344 Identities=10% Similarity=0.022 Sum_probs=208.3
Q ss_pred CCCE-EEecccccccccCCCCCHHHHHHHHHHHhhcc----ccccCCCCCHHHHHHHHHHHhhc-CCC-----CCeEEE-
Q psy14484 32 SGKR-YLDAISSWWVNLFGHSNSYINKALKNQLNKLE----HVMLSNLTHKPVIKLSEKLSSLT-QYK-----LGHCFY- 99 (430)
Q Consensus 32 ~g~~-~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~-~~~-----~~~v~~- 99 (430)
|++. .+||..|... -..++|.+.+++.++..... .....+.......++++.+++.+ +.. +++|++
T Consensus 46 ~~~~~~i~l~~g~~~--d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~ 123 (448)
T 3meb_A 46 DTNPKKVNLGVGAYR--DESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASC 123 (448)
T ss_dssp CCCTTCEEESSCCCC--CTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCCCCeEEeeccccc--CCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEE
Confidence 4443 6888776321 22345555555555532221 11111112222344555555544 434 579999
Q ss_pred -cCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCC--CCCC
Q psy14484 100 -GSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDS--RNIN 175 (430)
Q Consensus 100 -~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 175 (430)
|+||++|++.+..+..... +++.|++.+++|+++....... ..........+++ +.. +..
T Consensus 124 ~t~ggt~al~l~~~~~~~~~------~gd~Vlv~~p~~~~~~~~~~~~---------~~~~G~~v~~~~~~~~~~~~~~- 187 (448)
T 3meb_A 124 QSLSGTGSLHIGFEFLHLWM------PKAEFYMPSTTWPNHYGIYDKV---------FNKLKVPYKEYTYLRKDGELEI- 187 (448)
T ss_dssp EESHHHHHHHHHHHHHHHHC------TTCCEEEESSCCTHHHHHHHHH---------HCTTTSCCEEECCBCTTSCSSB-
T ss_pred ECCcHHHHHHHHHHHHHHhC------CCCEEEECCCCCHhHHHHHHhh---------HHhCCCeEEEEeccccccCCCc-
Confidence 9999999998655443332 5678999999998774433300 0011123344544 221 222
Q ss_pred CCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--
Q psy14484 176 KGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK-- 253 (430)
Q Consensus 176 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~-- 253 (430)
|+++|++.+++.+.++.++++.. ++|++| ..++.+.+++|.++|++||+++|+||+|.++++.+.
T Consensus 188 -----------d~e~l~~~l~~~~~~~~~v~~~~-p~NPtG-~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 188 -----------DFSNTKKDIQSAPEKSIFLFHAC-AHNPSG-IDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp -----------CHHHHHHHHHHSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHH
T ss_pred -----------CHHHHHHHHHhCCCCcEEEEeCC-CCCCCC-cCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCccc
Confidence 88999999987545577777777 888888 557788899999999999999999999998876541
Q ss_pred -ccccccC-CCCCc---eeeeecccCC-CccccEEE--EE--------c-H----HHHHhhhccCCcccccccCCCCCCH
Q psy14484 254 -FFACEHA-EIWPD---FLCLSKGITG-GYLPLSLV--MT--------T-D----KIYNSIYYKNNINIFLHSHSYSGNP 312 (430)
Q Consensus 254 -~~~~~~~-~~~~d---~~~~sK~l~g-G~~~ig~~--~~--------~-~----~~~~~~~~~~~~~~~~~~~t~~~~~ 312 (430)
......+ +..++ +.+|||.++. | +|+|++ ++ + + ++.+.+.. .....+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G-~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~~~~~~ 327 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYG-ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL------QIRKTWSMSAI 327 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGG-GCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH------HHHTTTSSCCH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCcc-ccceeeeeeeccccccccCCHHHHHHHHHHHHH------HHhcccCCccH
Confidence 1122111 22344 4579999984 6 899998 66 4 4 45544443 22344555667
Q ss_pred HHHHHHHHHHHHHh--------hcCHHHHHHHHHHHHHHHHHchhcCCC------eeeEeecceEEEEEEeecCCccchh
Q psy14484 313 LACCAALATLEIFN--------KDNILQRISQDMKKITKALTSLITHPK------IINFRQKGMIWAFDVIIEDPEQIET 378 (430)
Q Consensus 313 ~~~~aa~~~l~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~ 378 (430)
+++.++.++|+..+ .+...++++++.+++.+.|+++ ..+. +....+.+.++.+.-. +
T Consensus 328 ~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~-~------- 398 (448)
T 3meb_A 328 HGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR-KTPGPGSKGTWDHILTAIGMFTFTGL-T------- 398 (448)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCSTTTCCCTHHHHCCSSEEECCC-C-------
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCcccccceeCCCceEEEecCC-C-------
Confidence 77777766664211 1344566777777787877765 2222 2223344444443211 1
Q ss_pred HHHHHHHHH-HHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 379 FSKKFFVAA-LKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 379 ~a~~~~~~l-~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++..+ .++||.+.|+.+ ||+++ ..++++|++++++|++++.+
T Consensus 399 --~~~~~~ll~~~gV~v~~G~g--Ris~a-~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 399 --PEHVDYLKEKWSIYLVKAGG--RMSMC-GLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp --HHHHHHHHHHHCEEECSGGG--EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCEEEeCCCc--EEEEe-cCCHHHHHHHHHHHHHHHHh
Confidence 2355555 567999998543 88775 44777799999999999875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=214.67 Aligned_cols=331 Identities=10% Similarity=-0.005 Sum_probs=211.9
Q ss_pred CCHHHHHHHHHHHhhcccccc-CCCC----CHHHHHHHHHHHhhcCCCC--CeE--EEcCCchHHHHHHHHHHHHhhhh-
Q psy14484 51 SNSYINKALKNQLNKLEHVML-SNLT----HKPVIKLSEKLSSLTQYKL--GHC--FYGSDGASAVEVALKMSFHYWYN- 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~-~~~~----~~~~~~l~~~l~~~~~~~~--~~v--~~~~sgteA~~~al~~~~~~~~~- 120 (430)
+++.+.+++.+++........ .... .....++++++++.++... +++ ++++||++|++.++++++.....
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 568888888777754322111 1111 2444667788898886543 577 99999999999999999875322
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
+| .+++.|++..++|+++...... ...+++.++.+..++. |+++|+++++ +
T Consensus 188 ~g-~~~d~Vi~~~~~~~~~~~~~~~-------------~G~~v~~v~~~~~~~~------------d~~~Le~~i~---~ 238 (514)
T 3mad_A 188 KG-ITAPEAVVPVSAHAAFDKAAQY-------------FGIKLVRTPLDADYRA------------DVAAMREAIT---P 238 (514)
T ss_dssp HC-CSSCEEEEETTSCTHHHHHHHH-------------HTCEEEEECBCTTSCB------------CHHHHHHHCC---T
T ss_pred cC-CCCCeEEEeCccchHHHHHHHH-------------cCCeeEEeeeCCCCCC------------CHHHHHHHhc---c
Confidence 22 2347899999888875333222 1223455555443333 8999999985 4
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC-----ccc---ccccccCCCCCceee--ee
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR-----TGK---FFACEHAEIWPDFLC--LS 270 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~-----~g~---~~~~~~~~~~~d~~~--~s 270 (430)
++++|++++ +++++|.+.+ +++|.++|++||++||+||+|+++.. .|. .+.....++ |+++ ++
T Consensus 239 ~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~ 311 (514)
T 3mad_A 239 NTVVVAGSA-PGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGV--TSVSADTH 311 (514)
T ss_dssp TEEEEEEET-TCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTT
T ss_pred CCEEEEEeC-CCCCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCC--cEEEECch
Confidence 789999999 9999998877 99999999999999999999987632 222 223333344 5554 55
Q ss_pred cccCCCccccEEEEEcHHHHHhhhcc---CCcccccccCCC--CCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHH
Q psy14484 271 KGITGGYLPLSLVMTTDKIYNSIYYK---NNINIFLHSHSY--SGNPLACCAALATLEIFNK---DNILQRISQDMKKIT 342 (430)
Q Consensus 271 K~l~gG~~~ig~~~~~~~~~~~~~~~---~~~~~~~~~~t~--~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~ 342 (430)
|.+.++ .++|+++++++........ ..........++ +.+.....+..++++.+.. ++..+++.++++++.
T Consensus 312 K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~ 390 (514)
T 3mad_A 312 KYGYGA-KGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLK 390 (514)
T ss_dssp TTTCCC-SSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCC-CCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 987776 6899999987665432210 000000001111 1122223334444444332 456777888888888
Q ss_pred HHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--CCEEEEeCC-CCCCHHHHHHHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--GNTVYLMPP-YILNKNEIQHMTS 419 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~~~lR~~~~-~~~t~e~i~~~~~ 419 (430)
+.|+++. .+........++.+... . . . +.++.+.|.++||.+... ++.+|++++ ...++++++++++
T Consensus 391 ~~L~~~~---g~~~~~~~~~~~~~~~~-~-~--~---~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~ 460 (514)
T 3mad_A 391 AGVRAIP---SLKILGDPLWVIAVASD-E-L--N---IYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLA 460 (514)
T ss_dssp HHHHTST---TCEESSCCSSEEEEECS-S-S--C---HHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHH
T ss_pred HHHhhCC---CeEEeCCCeEEEEEeCC-C-C--C---HHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHH
Confidence 8888753 22222122334444333 1 1 1 367999999999987433 478999987 4456799999999
Q ss_pred HHHHHHHHh
Q psy14484 420 AIFQTFNEV 428 (430)
Q Consensus 420 ~l~~~l~~~ 428 (430)
+|++++.++
T Consensus 461 ~L~~~l~~~ 469 (514)
T 3mad_A 461 DLQDAVAQV 469 (514)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=219.62 Aligned_cols=355 Identities=12% Similarity=0.106 Sum_probs=208.1
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
.|+.||||.++.+. |+|++++.+++.... ..+...+...++++++++.+ +.++++|++||++|++.|+
T Consensus 39 ~~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~---~~y~~~~~~~~l~~~la~~~--~~~~v~~t~~gt~A~~~al 106 (467)
T 2oqx_A 39 SEDVFIDLLTDSGT-------GAVTQSMQAAMMRGD---EAYSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYI 106 (467)
T ss_dssp GGGCSEECSCCSSC-------SCCCHHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHH--CCSEEEEEC--CCSHHHHH
T ss_pred CCCeeEecccCCCc-------HHHHHHHHHHhccCc---ceeccCchhHHHHHHHHHHh--CcCcEEEcCCcHHHHHHHH
Confidence 36789999877543 888899888765422 11234566788999999998 4579999999999999999
Q ss_pred HHHHHhh-hhcCCCCCcEEEEEcCCCCCcchhhhcc-CCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 112 KMSFHYW-YNKGFLNKKKFICLQNSYHGETLGALAV-TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 112 ~~~~~~~-~~~g~~~~~~vl~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++++..+ ..+|.++++.|++. .||+.+...... .+..... ......... ....|.... .|++
T Consensus 107 ~~~~~~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~------------~d~~ 170 (467)
T 2oqx_A 107 PVLIKKREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRN-VYIKEAFDT-GVRYDFKGN------------FDLE 170 (467)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEE-CBCTTTTCT-TSCCTTTTC------------BCHH
T ss_pred HHHhccccccCCCCccceEEec--ccccccchhhhhccCcceee-ccccccccC-CCCCCccCC------------cCHH
Confidence 9987631 11121111556654 578654322211 1111000 000000000 000011111 1889
Q ss_pred HHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----------CCCccccc-cc
Q psy14484 190 DLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CGRTGKFF-AC 257 (430)
Q Consensus 190 ~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g----------~g~~g~~~-~~ 257 (430)
+|+++++++. +++++|++++ ++|++|..+++.+++++|.++|++||++||+|++|.. .+..|... .+
T Consensus 171 ~Le~~i~~~~~~~~~~vi~~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~ 249 (467)
T 2oqx_A 171 GLERGIEEVGPNNVPYIVATI-TSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQI 249 (467)
T ss_dssp HHHHHHHHHCGGGCCCEEEES-SBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHH
T ss_pred HHHHHHHhcCCCceeEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHH
Confidence 9999997532 3689999999 9988755888999999999999999999999965532 12222211 11
Q ss_pred c--cCCCCCce--eeeecccCCCccccE-EEEEcHH-HHHhhhccCCccccc----ccCCCCCCHHHHHHHH-HHHHHHh
Q psy14484 258 E--HAEIWPDF--LCLSKGITGGYLPLS-LVMTTDK-IYNSIYYKNNINIFL----HSHSYSGNPLACCAAL-ATLEIFN 326 (430)
Q Consensus 258 ~--~~~~~~d~--~~~sK~l~gG~~~ig-~~~~~~~-~~~~~~~~~~~~~~~----~~~t~~~~~~~~~aa~-~~l~~~~ 326 (430)
. .. ..+|+ .+++|+++ .|+| +++++++ +++.+.. .+... ...+++.......+++ ..++...
T Consensus 250 ~~~~~-~~~d~~~~s~sK~~g---~~~Gg~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~ 322 (467)
T 2oqx_A 250 TRETY-KYADMLAMSAKKDAM---VPMGGLLCMKDDSFFDVYTE---CRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM 322 (467)
T ss_dssp HHHHG-GGCSEEEEESSSTTC---CSSCEEEEECSGGGHHHHHH---HHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTT
T ss_pred hhhhh-ccCCeEEEecccccC---CCCceEEEecChhHHHHHHH---HHHhhhccCCcccccchhhhHHHHHHHhhHhhh
Confidence 0 00 11344 46778775 3544 5566655 4333221 00010 1112232222222222 2222211
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeec--CCccchhH-HHHHHHHH-HHCCcEEeecC----
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE--DPEQIETF-SKKFFVAA-LKNELLLRPIG---- 398 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~-a~~~~~~l-~~~Gv~~~~~~---- 398 (430)
+++..++..++.+++.+.|+++ ..+.. +..+.++++.+. . .......+ +..+++.| .++||.+.+++
T Consensus 323 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~ 397 (467)
T 2oqx_A 323 NLDWLAYRIAQVQYLVDGLEEI-GVVCQ---QAGGHAAFVDAG-KLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLL 397 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCEE---EECSSCEEEEHH-HHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHC-CCeee---cCCceEEEEech-hhcccCCcccccHHHHHHHHHHhcCceecccccccc
Confidence 1235566677888888888876 44433 334556666653 2 11112222 46678888 88899988732
Q ss_pred --------------CEEEEeCCCC-CCHHHHHHHHHHHHHHHHH
Q psy14484 399 --------------NTVYLMPPYI-LNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 --------------~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~ 427 (430)
+.+||+++.. +++++|++++++|++++.+
T Consensus 398 ~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 398 GRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 6899999998 9999999999999999875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=215.95 Aligned_cols=341 Identities=10% Similarity=-0.002 Sum_probs=199.7
Q ss_pred EEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccc-----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcC
Q psy14484 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGS 101 (430)
Q Consensus 27 ~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~ 101 (430)
+..+.++.-|+|+.++ +..+|++++++.+++....... ......+...++++++++.++.+++++++++
T Consensus 14 ~~~~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 3466677889998764 2468999999999887531110 0012235567899999999987778999999
Q ss_pred CchHHHHHHHHHHHHhhhhcCCCCCc-EEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCCh
Q psy14484 102 DGASAVEVALKMSFHYWYNKGFLNKK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 180 (430)
Q Consensus 102 sgteA~~~al~~~~~~~~~~g~~~~~-~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (430)
||++|++.++++++.+... +++ .|++.++.|++.......+. ....+...++.+.+...
T Consensus 88 g~t~al~~~~~~l~~~~~~----~gd~~Vl~~~~~~~~~~~~~~~~~----------~~g~~~~~v~~~~~~~~------ 147 (400)
T 3vax_A 88 GATESNNIALLGLAPYGER----TGRRHIITSAIEHKAVLEPLEHLA----------GRGFEVDFLTPGPSGRI------ 147 (400)
T ss_dssp CHHHHHHHHHHTTHHHHHH----HTCCEEEEETTSCHHHHHHHHHHH----------TTTCEEEEECCCTTCCC------
T ss_pred CHHHHHHHHHHHHHHhhcc----CCCCEEEECccccHhHHHHHHHHH----------hcCCeEEEEccCCCCCc------
Confidence 9999999999987622101 456 88888877776533222210 01123345555433322
Q ss_pred hHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC
Q psy14484 181 NEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260 (430)
Q Consensus 181 ~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~ 260 (430)
|+++|+++++ +++++|++++ ++|++|...+ +++|.++|++||+++|+||+|+ ++... .+..
T Consensus 148 ------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~~----~~~~ 208 (400)
T 3vax_A 148 ------SVEGVMERLR---PDTLLVSLMH-VNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKVP----GDLT 208 (400)
T ss_dssp ------CHHHHHTTCC---TTEEEEECCS-BCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTSG----GGGG
T ss_pred ------CHHHHHHhcC---CCceEEEEEC-CCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCCC----cChh
Confidence 7899988885 5789999999 9999998877 8999999999999999999997 43221 1222
Q ss_pred CCCCceeeee--cccCCCccccEEEE-EcHH-HH---HhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHhh--cCH
Q psy14484 261 EIWPDFLCLS--KGITGGYLPLSLVM-TTDK-IY---NSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFNK--DNI 330 (430)
Q Consensus 261 ~~~~d~~~~s--K~l~gG~~~ig~~~-~~~~-~~---~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~ 330 (430)
.. +|++++| |. .|+ .++|+++ ++++ +. ..+...- ...........+.++.++.+..++++.+.+ ++.
T Consensus 209 ~~-~d~~~~s~~K~-~g~-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~ 285 (400)
T 3vax_A 209 TP-IDMISISGHKI-GAP-KGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQW 285 (400)
T ss_dssp SC-CSEEEEETGGG-TSC-SSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHH
T ss_pred hc-CcEEEEeHHHh-CCC-CceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHH
Confidence 33 7887655 84 333 4689888 8762 11 1111100 000000112334566777777777776543 456
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEee----cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQ----KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------- 397 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------- 397 (430)
.++++++.+++.+.|+ + +.+..... .+.++.+.+. .. . +..+.+.|. +||.+.++
T Consensus 286 ~~~~~~~~~~l~~~L~-~---~~~~~~~~~~~~~~~~~~~~~~-~~---~---~~~l~~~L~-~gi~v~~g~~~~~~~~~ 353 (400)
T 3vax_A 286 QVAAQDLRSRLLAGLA-S---TSFQVNGDQDHVVPHILNLSFE-DV---D---AEAFLVTLK-DLVAVATGSASTSASFT 353 (400)
T ss_dssp HHHHHHHHHHHHHHHT-T---TTCEECSCTTSBCTTEEEEECT-TC---C---HHHHHHHHH-HHHHHTTTTEEEEEEEC
T ss_pred HHHHHHHHHHHHHhhC-C---CCEEEeCCcccCCCCEEEEEeC-CC---C---HHHHHHHHh-cCcEEEecccccCCCCC
Confidence 6777778888888776 3 22221111 2346666554 21 1 356788888 88866552
Q ss_pred ---------------CCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 ---------------GNTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ---------------~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++||++ +..++++++++++++|++++++
T Consensus 354 ~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 354 PSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp CHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred ccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 38999999 8899999999999999988754
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=210.62 Aligned_cols=340 Identities=14% Similarity=0.115 Sum_probs=212.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
.|+.|+||.++.+...+ .+++.+++. ... ......+...++++.+++.+ +.+++++++||++|++.++
T Consensus 40 ~~~~ylD~~~~~~~~~~---~~~~~~a~~----~~~---~~y~~~~~~~~l~~~la~~~--~~~~~~~~~~gt~a~~~al 107 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNAM---SDKQWAGMM----MGD---EAYAGSENFYHLERTVQELF--GFKHIVPTHQGRGAENLLS 107 (456)
T ss_dssp GGGCSEECSCSSSCCCC---CHHHHHHHT----TCC---CCSSSCHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHH
T ss_pred cccceeeeccccCCccC---CHHHHHHhh----cch---hhcccChhHHHHHHHHHHHh--CCCcEEEeCCcHHHHHHHH
Confidence 56779999887544322 466666654 211 11234567789999999998 4568999999999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC----------CCCCCCCCChh
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD----------SRNINKGNSAN 181 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 181 (430)
+++.. +++ ++.+++||+.+.......+.. ...++... .+.
T Consensus 108 ~~l~~--------~gd--i~~~~~~~~~~~~~~~~~G~~------------~~~v~~~~~~~~~~~~~~~~~-------- 157 (456)
T 2ez2_A 108 QLAIK--------PGQ--YVAGNMYFTTTRYHQEKNGAV------------FVDIVRDEAHDAGLNIAFKGD-------- 157 (456)
T ss_dssp HHHCC--------TTC--EEEESSCCHHHHHHHHHTTCE------------EEECBCGGGGCTTCCCSCTTC--------
T ss_pred HHhCC--------CCC--EeccccccchhHHHHHHcCCE------------EEEecccccccccccccccCC--------
Confidence 88743 334 777889987754444333311 12222211 011
Q ss_pred HHHHHHHHHHHHHHHhCC-CCeEEEEEcccccc-CCCcccCChHHHHHHHHHHHhcCCEEEEeccccC----------CC
Q psy14484 182 EIARCAIFDLEILLKKNH-NKIAAIIIEPLVQC-AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG----------CG 249 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~-~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g----------~g 249 (430)
.|+++|++++++.+ ..+++|++++ ++| ++| ..++.+++++|.++|++||+++|+||+|+. +.
T Consensus 158 ----~d~~~l~~~i~~~t~~~~~~v~l~~-p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~ 231 (456)
T 2ez2_A 158 ----IDLKKLQKLIDEKGAENIAYICLAV-TVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQG 231 (456)
T ss_dssp ----BCHHHHHHHHHHHCGGGEEEEEEES-SBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTT
T ss_pred ----CCHHHHHHHHHhccccceeEEEEec-cCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccc
Confidence 17899999997542 3468888875 554 788 677889999999999999999999999984 33
Q ss_pred Ccccccc-c-ccCCCCCceeeee-cccCCCccccEEEEE-cHHHHHhhhccCCccccccc-CCCC-CCHHHHHH-HHHHH
Q psy14484 250 RTGKFFA-C-EHAEIWPDFLCLS-KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHS-HSYS-GNPLACCA-ALATL 322 (430)
Q Consensus 250 ~~g~~~~-~-~~~~~~~d~~~~s-K~l~gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~-~t~~-~~~~~~~a-a~~~l 322 (430)
+.|..+. + +..+..+|++++| |.+++.. +.|++++ ++++++.+.. .....++ .++. .+...+.+ +.+.+
T Consensus 232 ~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~a~~~~ 307 (456)
T 2ez2_A 232 FENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKE---LVVVYEGMPSYGGLAGRDMEAMAIGLR 307 (456)
T ss_dssp CTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHH---HHHHHTCCTTTTTCCHHHHHHHHHHHH
T ss_pred cCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHH---HHhhccCcccccCcchhHHHHHHHHHH
Confidence 4443211 0 0123347888775 5555431 4788888 5787766543 0000011 1222 23333333 44444
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeec--CCccchhH-HHHHHHHH-HHCCcEEeec-
Q psy14484 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE--DPEQIETF-SKKFFVAA-LKNELLLRPI- 397 (430)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~-a~~~~~~l-~~~Gv~~~~~- 397 (430)
+.++ +++.++.+++.+++.+.|+++ ..+.+. +..|.++++.+. . ......++ ...+++.| .++||.+.+.
T Consensus 308 ~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~--p~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g 382 (456)
T 2ez2_A 308 EAMQ-YEYIEHRVKQVRYLGDKLKAA-GVPIVE--PVGGHAVFLDAR-RFCEHLTQDEFPAQSLAASIYVETGVRSMERG 382 (456)
T ss_dssp HHTC-HHHHHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHH-HHTTTSCGGGCHHHHHHHHHHHHHSEECEEES
T ss_pred HHhH-HHHHHHHHHHHHHHHHHHhcC-CCcccc--CCCceEEEEEhH-HhcCCCChhhccHHHHHHHHHHhcCeeeeccc
Confidence 4332 356677777788888888764 333221 233566666553 2 11112333 45567777 5779875431
Q ss_pred -----------------CCEEEEeCCCC-CCHHHHHHHHHHHHHHHHHh
Q psy14484 398 -----------------GNTVYLMPPYI-LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -----------------~~~lR~~~~~~-~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+.+||+++.. ++++++++++++|++++++.
T Consensus 383 ~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 383 IISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp HHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTG
T ss_pred ccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 26899999987 89999999999999998753
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=209.71 Aligned_cols=322 Identities=12% Similarity=0.093 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~v 129 (430)
-+|++.+++.+.+.. + ...+......++++.+++.++.+.+ ++++++||++|++.+++++.. ++++|
T Consensus 29 ~~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~--------~gd~v 96 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--N--FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--------EGDRV 96 (396)
T ss_dssp CCHHHHHHTTSCCCC--T--TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------TTCEE
T ss_pred CCHHHHHHhcccccc--C--CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcC--------CCCeE
Confidence 467888887664321 1 1111224578899999999987777 899999999999999998753 56789
Q ss_pred EEEcCCCCCcch-hhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14484 130 ICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208 (430)
Q Consensus 130 l~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~e 208 (430)
++.+++|+++.. ...... ....+.++.+..... |+++|++++++. ++++|+++
T Consensus 97 l~~~~~~~~~~~~~~~~~~------------g~~~~~v~~~~~~~~------------d~~~l~~~l~~~--~~~~v~~~ 150 (396)
T 2ch1_A 97 LIAVNGIWAERAVEMSERY------------GADVRTIEGPPDRPF------------SLETLARAIELH--QPKCLFLT 150 (396)
T ss_dssp EEEESSHHHHHHHHHHHHT------------TCEEEEEECCTTSCC------------CHHHHHHHHHHH--CCSEEEEE
T ss_pred EEEcCCcccHHHHHHHHHc------------CCceEEecCCCCCCC------------CHHHHHHHHHhC--CCCEEEEE
Confidence 999999998631 111111 122344544432222 889999999742 56778888
Q ss_pred cccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 209 PLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 209 p~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
+ ++|++|.+.+ +++|.++|+++|+++|+||+|+ ++.. ..... ...+|++++| |.++++ .++|+++++
T Consensus 151 ~-~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~-~g~g~~~~~ 219 (396)
T 2ch1_A 151 H-GDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAP-PGITPISIS 219 (396)
T ss_dssp S-EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCC-SSCEEEEEC
T ss_pred C-CCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCC-CCeEEEEEC
Confidence 8 8899998777 8899999999999999999997 5432 12222 2346877655 988876 578999999
Q ss_pred HHHHHhhhccC-Cccccc----------------ccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHH
Q psy14484 287 DKIYNSIYYKN-NINIFL----------------HSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALT 346 (430)
Q Consensus 287 ~~~~~~~~~~~-~~~~~~----------------~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~ 346 (430)
+++++.+.... +.+.+. ....++.+..++.++.++|+.+.+ ++..++++++.+++.+.|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (396)
T 2ch1_A 220 PKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLG 299 (396)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 98877664310 000000 112234566777777788876533 3456777888888888888
Q ss_pred chhcCCCeeeE--eecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEeC-CCCCCHHHHHHH
Q psy14484 347 SLITHPKIINF--RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLMP-PYILNKNEIQHM 417 (430)
Q Consensus 347 ~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~~-~~~~t~e~i~~~ 417 (430)
++ ........ ...+.++.+.+. .+.. +.++.+.|.++ ||.+.++ ++++|+++ ++.+++++++++
T Consensus 300 ~~-g~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~ 372 (396)
T 2ch1_A 300 KM-GLDIFVKDPRHRLPTVTGIMIP-KGVD-----WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFY 372 (396)
T ss_dssp HH-TCCBSSCSGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred HC-CCeeccCCccccCCceEEEEcC-CCCC-----HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHH
Confidence 76 33322111 012346666654 3211 36788888876 9999874 47899998 567799999999
Q ss_pred HHHHHHHHHHh
Q psy14484 418 TSAIFQTFNEV 428 (430)
Q Consensus 418 ~~~l~~~l~~~ 428 (430)
+++|+++++++
T Consensus 373 ~~~l~~~l~~~ 383 (396)
T 2ch1_A 373 LYGFKESLKAT 383 (396)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-25 Score=212.84 Aligned_cols=331 Identities=11% Similarity=0.083 Sum_probs=213.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhh-ccc-cccCCC--CCH---HHHH-HHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEH-VMLSNL--THK---PVIK-LSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~~~~~--~~~---~~~~-l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
++++|+.++. +++ +|+|.+++.+++.+ ... +....+ ..+ ..++ .++++++.++.+. ..+++++|++
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~-~~i~~~sGt~ 96 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAW-ANVQPHSGSQ 96 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCc-ceEEecchHH
Confidence 4688988874 344 89999999998864 211 111111 222 2333 2358888886543 3355667889
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcch--hhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL--GALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANE 182 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 182 (430)
|++.+++++.. +++.|++.+++|+++.. ......+. .. .....+.+ +.+..
T Consensus 97 a~~~~~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~~g~-----~~-----~~~~~~~~~~~~~~-------- 150 (407)
T 2dkj_A 97 ANMAVYMALME--------PGDTLMGMDLAAGGHLTHGSRVNFSGK-----LY-----KVVSYGVRPDTELI-------- 150 (407)
T ss_dssp HHHHHHHHHCC--------TTCEEEEECGGGTCCGGGTCTTSHHHH-----HS-----EEEEECCCTTTSSC--------
T ss_pred HHHHHHHHhcC--------CCCEEEEecccccCccchHHHHHhcCc-----eE-----EEEecCCCcccCcc--------
Confidence 99999998843 56789999999987731 11111110 00 01122211 12222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC-CCCcccccccccC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG-CGRTGKFFACEHA 260 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g-~g~~g~~~~~~~~ 260 (430)
|+++|++++++. ++++|++ +| .++ ...+ +++|.++|++||+++|+||+|++ +...|.... ..
T Consensus 151 ----d~~~l~~~l~~~--~~~~v~~~~p-~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~ 214 (407)
T 2dkj_A 151 ----DLEEVRRLALEH--RPKVIVAGAS-AYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PL 214 (407)
T ss_dssp ----CHHHHHHHHHHH--CCSEEEECCS-SCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CT
T ss_pred ----CHHHHHHHHhhc--CCeEEEEecc-ccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--cc
Confidence 889999999742 4566666 66 442 3444 89999999999999999999984 432332111 11
Q ss_pred CCCCcee--eeecccCCCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHH
Q psy14484 261 EIWPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRI 334 (430)
Q Consensus 261 ~~~~d~~--~~sK~l~gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~ 334 (430)
. .+|++ +++|+++| .++|+++++ +++++.+... .....+.+.++..++++.++++.+.. ++..+++
T Consensus 215 ~-~~di~~~s~sK~l~g--~~~G~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 286 (407)
T 2dkj_A 215 P-YAHVVTSTTHKTLRG--PRGGLILSNDPELGKRIDKL-----IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLV 286 (407)
T ss_dssp T-TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred c-cccEEEEeccccCCC--CCceEEEECCHHHHHHHHhh-----hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 26777 78899986 478999999 7888776540 11223344566666666677776432 4567778
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEE
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYL 403 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~ 403 (430)
+++.+++.+.|+++ ..+.... +..|.++++.+. .... . ...+.+.|.++||.+.++ ++++|+
T Consensus 287 ~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~~~-~~~~--~--~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi 359 (407)
T 2dkj_A 287 VENAKRLAEELARR-GYRIVTG-GTDNHLFLVDLR-PKGL--T--GKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRI 359 (407)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECG-GGTC--C--HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHHHHHHHHHhC-CceeecC-CCCceEEEEECc-ccCC--C--HHHHHHHHHHcCceecCCcCccccccccCCCceee
Confidence 88888888888765 3222111 346788887776 3111 1 357888899999998873 357999
Q ss_pred eCCCC----CCHHHHHHHHHHHHHHHHH
Q psy14484 404 MPPYI----LNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 404 ~~~~~----~t~e~i~~~~~~l~~~l~~ 427 (430)
+++.. ++++++++++++|++++.+
T Consensus 360 s~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 360 GTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 88753 7999999999999998875
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=209.68 Aligned_cols=291 Identities=12% Similarity=0.093 Sum_probs=196.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++++++.++. +++++++||++|+..+++.+.. +++.|++.++.||+........
T Consensus 60 ~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~------ 123 (398)
T 2rfv_A 60 RLGNPTTDALEKKLAVLERG--EAGLATASGISAITTTLLTLCQ--------QGDHIVSASAIYGCTHAFLSHS------ 123 (398)
T ss_dssp TTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSSCHHHHHHHHTH------
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhC--------CCCEEEEcCCCcccHHHHHHHH------
Confidence 45678889999999999953 4778888899999999998753 5688999999998764332110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
..........++.+ |++++++.++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 124 ---~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~ 175 (398)
T 2rfv_A 124 ---MPKFGINVRFVDAA-----------------KPEEIRAAMR---PETKVVYIET-PANPTLSLVD----IETVAGIA 175 (398)
T ss_dssp ---HHHTTCEEEEECTT-----------------SHHHHHHHCC---TTEEEEEEES-SBTTTTBCCC----HHHHHHHH
T ss_pred ---HHHcCCEEEEeCCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCcccC----HHHHHHHH
Confidence 01111233444433 7889988885 4789999999 9999998876 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCcccc-EEEEEcHHHHH-hhhccCCcccccccC-CCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSH-SYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~i-g~~~~~~~~~~-~~~~~~~~~~~~~~~-t~~ 309 (430)
++||+++|+||+|+.+ ..+... .++....+.+++|.+++++.|+ |++++++++++ .+.. ..... +.+
T Consensus 176 ~~~~~~li~De~~~~~-~~~~~~---~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~ 245 (398)
T 2rfv_A 176 HQQGALLVVDNTFMSP-YCQQPL---QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFV------GLKDITGGC 245 (398)
T ss_dssp HHTTCEEEEECTTTCT-TTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------HHHHTTCCC
T ss_pred HHcCCEEEEECCCccc-ccCCch---hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHH------HHHhCCCCC
Confidence 9999999999999833 222221 1233233357889997733688 99999998876 4443 22333 456
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-----------hcCCCeee----EeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKIIN----FRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-----------~~~~~~~~----~~~~g~~~~~~~~~~~~~ 374 (430)
.+++++.++.++|+.+ +...++..++.+.+.+.|++. ...|.+.. .++.|.++.+++. +.
T Consensus 246 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~-~~-- 320 (398)
T 2rfv_A 246 MSPFNAWLTLRGVKTL--GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA-GG-- 320 (398)
T ss_dssp CCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET-TH--
T ss_pred CCHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEc-CC--
Confidence 6888888888877643 223445556666666666542 11222111 1246888888776 31
Q ss_pred cchhHHHHHHHHHHHCCcEEeec----------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRPI----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~~----------------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
...+..+.+.+...|+.+.++ .+.+|++++..+++++++.++++|+++
T Consensus 321 --~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 321 --LEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp --HHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 111344555554445543322 378999999999999999998888754
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-24 Score=209.98 Aligned_cols=353 Identities=14% Similarity=0.100 Sum_probs=209.5
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
.|+.||||.++++. |.|.+++.+++..... .+...+...++++++++.++ .++++||+||++|++.|+
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~---~y~~~~~~~~l~~~la~~~~--~~~v~~t~ggt~A~~~al 108 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDE---AYAGSRNYYDLKDKAKELFN--YDYIIPAHQGRGAENILF 108 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCC---CSSSCHHHHHHHHHHHHHHC--CCEEEEESSHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhccc---ccccCccHHHHHHHHHHHcC--CCcEEEcCCcHHHHHHHH
Confidence 46789999887543 7788888777654321 12345677899999999994 479999999999999999
Q ss_pred HHHHHhhhhcCCCCCc--EEEEEcCCCC-CcchhhhccCCCccchhhhhc-cCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKK--KFICLQNSYH-GETLGALAVTNIQSFKEIYTS-LLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~--~vl~~~~~yh-g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
++++.+.... ++. .||+. .+| +.+.......+.......... .... ...+.... .|
T Consensus 109 ~~~~~~~~~~---Gd~~~~viv~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~------------~d 168 (467)
T 1ax4_A 109 PVLLKYKQKE---GKAKNPVFIS--NFHFDTTAAHVELNGCKAINIVTEKAFDSE---TYDDWKGD------------FD 168 (467)
T ss_dssp HHHHHHHHHT---TCCSSCEEEE--SSCCHHHHHHHHHTTCEEEECBCGGGGCTT---SCCTTTTC------------BC
T ss_pred HHHHHhhccC---CCccceEEEe--ccccchhhHHHhccCCceeccccccccccc---ccCCcccc------------cC
Confidence 9987632111 333 15554 444 333333332321111000000 0000 00000111 27
Q ss_pred HHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC--C--------CCcccccc
Q psy14484 188 IFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG--C--------GRTGKFFA 256 (430)
Q Consensus 188 ~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g--~--------g~~g~~~~ 256 (430)
+++|++++++.. +++++|++++ ++|++|..+++.+++++|.++|++||++||+||++.. . +..+..
T Consensus 169 ~~~le~~i~~~~~~~~~~vi~~~-~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~-- 245 (467)
T 1ax4_A 169 IKKLKENIAQHGADNIVAIVSTV-TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNAT-- 245 (467)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCC--
T ss_pred HHHHHHHHHhcCCCCeeEEEEec-cccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCc--
Confidence 899999997542 3799999999 9999856888999999999999999999999998652 0 122211
Q ss_pred cccCC----CCCceee--eecccCCCccccEE-EEEc-H-HHHHhhhccCCcccccccCCCCCCHHHHHH-HHHHHHHHh
Q psy14484 257 CEHAE----IWPDFLC--LSKGITGGYLPLSL-VMTT-D-KIYNSIYYKNNINIFLHSHSYSGNPLACCA-ALATLEIFN 326 (430)
Q Consensus 257 ~~~~~----~~~d~~~--~sK~l~gG~~~ig~-~~~~-~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a-a~~~l~~~~ 326 (430)
..... ..+|+++ ++|.+ | .|+|+ ++.+ + ++++.+... ........++++.+....+ ...+++.+.
T Consensus 246 ~~~~~~~~~~~~d~~~~s~sK~~--g-~~~Gg~~~~~d~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ 320 (467)
T 1ax4_A 246 IKEVIFDMYKYADALTMSAKKDP--L-LNIGGLVAIRDNEEIFTLARQR--CVPMEGFVTYGGLAGRDMAAMVQGLEEGT 320 (467)
T ss_dssp HHHHHHHHGGGCSEEEEETTSTT--C-CSSCEEEEESSCHHHHHHHHHH--HHHHTCSTTTTTCCHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccceEEEeccccC--C-CCcceEEEeCCHHHHHHHHHhh--ccccccccccCCccchHHHHHHHHHHHhh
Confidence 00000 1256664 45655 3 46655 4556 5 777665430 0000112244444433332 223455432
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeec---CCccchhHHHHHHHHH-HHCCcEEeec-----
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE---DPEQIETFSKKFFVAA-LKNELLLRPI----- 397 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~a~~~~~~l-~~~Gv~~~~~----- 397 (430)
+++..++..++.+++.+.|++. ..+... +..|.++++... . ......-....+++.| .++||.+.+.
T Consensus 321 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~ 396 (467)
T 1ax4_A 321 EEEYLHYRIGQVKYLGDRLREA-GIPIQY--PTGGHAVFVDCK-KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLL 396 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEST-TTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhC-CCCccc--CCCceEEEEehh-hhccccccCCCCHHHHHHHHHHhcCceeeecCcccc
Confidence 2234555556778888888763 333221 233555555511 0 0000000136788888 8889998772
Q ss_pred ------C-------CEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ------G-------NTVYLMPP-YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ------~-------~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+ +.+||+++ ..+|++++++++++|+++++++
T Consensus 397 ~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 397 GRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp CBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 2 68999999 4589999999999999888753
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-24 Score=204.68 Aligned_cols=323 Identities=12% Similarity=0.077 Sum_probs=216.1
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
+.|+||.++... ++ |++++++.+++.... ....+...++++.++++++ .+++++++||++|++.+++.
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-----y~~~~~~~~l~~~la~~~~--~~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-----YLLGPELEGFEAEFAAYCE--TDHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-----CSSSHHHHHHHHHHHHHTT--SSEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-----CCCchhHHHHHHHHHHHHC--CCeEEEecCHHHHHHHHHHH
Confidence 579999887543 33 899999999886532 2234677899999999995 34788999999999999988
Q ss_pred H-HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHH
Q psy14484 114 S-FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 114 ~-~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l 191 (430)
+ .. +++.|++.+++|++....... .+ .....++.+. .+.. |+++|
T Consensus 98 ~~~~--------~gd~vl~~~~~~~~~~~~~~~-~g------------~~~~~~~~~~~~~~~------------d~~~l 144 (399)
T 2oga_A 98 LGIG--------PGDEVIVPSHTYIASWLAVSA-TG------------ATPVPVEPHEDHPTL------------DPLLV 144 (399)
T ss_dssp TTCC--------TTCEEEEESSSCTHHHHHHHH-TT------------CEEEEECBCSSSSSB------------CHHHH
T ss_pred hCCC--------CcCEEEECCCccHHHHHHHHH-CC------------CEEEEEecCCCCCCc------------CHHHH
Confidence 7 32 567899999999885433222 11 1223444332 1222 78999
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee-
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS- 270 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s- 270 (430)
+++++ +++++|+++ +++|...+ +++|.++|+++|+++|+||+|+ ++.... ....+..+|++++|
T Consensus 145 ~~~i~---~~~~~v~~~----n~tG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~~~di~~~S~ 209 (399)
T 2oga_A 145 EKAIT---PRTRALLPV----HLYGHPAD----MDALRELADRHGLHIVEDAAQA-HGARYR---GRRIGAGSSVAAFSF 209 (399)
T ss_dssp HHHCC---TTEEEECCB----CGGGCCCC----HHHHHHHHHHHTCEECEECTTC-TTCEET---TEETTCTTCEEEEEC
T ss_pred HHhcC---CCCeEEEEe----CCcCCccC----HHHHHHHHHHcCCEEEEECccc-ccCccC---CeecccccCEEEEeC
Confidence 98885 467777643 35676666 9999999999999999999997 322111 11123336888775
Q ss_pred ---cccCC-CccccEEEEEc-HHHHHhhhc---cCCccccc---ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q psy14484 271 ---KGITG-GYLPLSLVMTT-DKIYNSIYY---KNNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMK 339 (430)
Q Consensus 271 ---K~l~g-G~~~ig~~~~~-~~~~~~~~~---~~~~~~~~---~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~ 339 (430)
|.+++ | ++|+++.+ +++.+.+.. .+....+. .+.++..+++.++++.++++.++ .+.++.+++.+
T Consensus 210 ~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~ 285 (399)
T 2oga_A 210 YPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAA 285 (399)
T ss_dssp CTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHH
T ss_pred CCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 99987 4 78998886 787665543 01000000 12234567888888777777553 35666777777
Q ss_pred HHHHHHHchhcCCCeeeEeecce--EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-------------------
Q psy14484 340 KITKALTSLITHPKIINFRQKGM--IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG------------------- 398 (430)
Q Consensus 340 ~l~~~l~~l~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~------------------- 398 (430)
++.+.|+++...... ..+..+. ++.+.+. .. . ..++.+.|.++||.+.+..
T Consensus 286 ~l~~~L~~~~g~~~~-~~~~~~~~~~~~~~~~-~~---~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 357 (399)
T 2oga_A 286 EYLSGLAGLPGIGLP-VTAPDTDPVWHLFTVR-TE---R---RDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGS 357 (399)
T ss_dssp HHHHHTTTCTTCBCC-CCCTTEECCCSSEEEE-CS---S---HHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTS
T ss_pred HHHHHhccCCCcccc-CCCCCCcceeEEEEEE-CC---C---HHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCC
Confidence 888877765222111 1111122 2223333 21 1 3678999999999887532
Q ss_pred ---------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 ---------NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ---------~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+|++++..+|++|+++++++|+++++++
T Consensus 358 ~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 358 LPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999998765
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=199.34 Aligned_cols=332 Identities=12% Similarity=0.095 Sum_probs=211.2
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKM 113 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~ 113 (430)
.+++||.++. +.+ .+|++++++.+.... ...++..+...++++.+++.++ .+++++++||++|+..++++
T Consensus 3 ~~~i~~~~~~--~~~--p~~~~~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~~~~~ 72 (347)
T 1jg8_A 3 HMMIDLRSDT--VTK--PTEEMRKAMAQAEVG----DDVYGEDPTINELERLAAETFG--KEAALFVPSGTMGNQVSIMA 72 (347)
T ss_dssp --CEECSCGG--GCC--CCHHHHHHHHTCCCC----CGGGTCCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHH
T ss_pred ceEEEecccc--CCC--CCHHHHHHHhcCCCC----CcccCCChHHHHHHHHHHHHhC--CceEEEecCcHHHHHHHHHH
Confidence 4678998873 333 678888888654211 1123456677899999999984 46889999999999999887
Q ss_pred HHHhhhhcCCCCCcEEEEEcCCCCCcch-h-hhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 114 SFHYWYNKGFLNKKKFICLQNSYHGETL-G-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 114 ~~~~~~~~g~~~~~~vl~~~~~yhg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+.. +++.|++.+++|..... . .....+ .....+ .+.+... |+++|
T Consensus 73 ~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~~g------------~~~~~v-~~~~~~~------------d~~~l 119 (347)
T 1jg8_A 73 HTQ--------RGDEVILEADSHIFWYEVGAMAVLSG------------VMPHPV-PGKNGAM------------DPDDV 119 (347)
T ss_dssp HCC--------TTCEEEEETTCHHHHSSTTHHHHHTC------------CEEEEE-CEETTEE------------CHHHH
T ss_pred hcC--------CCCEEEEcCcchhhhccccchhhccC------------eEEEEe-cCCCCcc------------CHHHH
Confidence 643 56788888887643211 0 111111 112223 2111111 78999
Q ss_pred HHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC---CcccccccccCCCCCc
Q psy14484 192 EILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG---RTGKFFACEHAEIWPD 265 (430)
Q Consensus 192 e~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g---~~g~~~~~~~~~~~~d 265 (430)
++++++. ..++++|++++ ++|++|....+.+.+++|.++|++||+++|+||+|. ++ ..+. .........|
T Consensus 120 ~~~i~~~~~~~~~~~~v~~~~-~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~-~~~~~~~~~--~~~~~~~~~d 195 (347)
T 1jg8_A 120 RKAIRPRNIHFPRTSLIAIEN-THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI-FNASIASGV--PVKEYAGYAD 195 (347)
T ss_dssp HHHSCCSCTTSCCEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH-HHHHHHHCC--CHHHHHHTCS
T ss_pred HHHhccccccccCceEEEEec-cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh-hcchhhcCC--ChHHhccccc
Confidence 9988631 12689999998 999883366777889999999999999999999874 21 1111 1111111223
Q ss_pred --eeeeecccCCCccccE-EEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q psy14484 266 --FLCLSKGITGGYLPLS-LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKIT 342 (430)
Q Consensus 266 --~~~~sK~l~gG~~~ig-~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~ 342 (430)
++++||++++ ++| +++.++++++.+.. .+. ..+++...+.+.++++..+|+.. .+..++..++.+++.
T Consensus 196 ~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~ 266 (347)
T 1jg8_A 196 SVMFCLSKGLCA---PVGSVVVGDRDFIERARK---ARK-MLGGGMRQAGVLAAAGIIALTKM--VDRLKEDHENARFLA 266 (347)
T ss_dssp EEEEESSSTTCC---SSCEEEEECHHHHHHHHH---HHH-HHTCCCSSTHHHHHHHHHHHHHS--STTHHHHHHHHHHHH
T ss_pred EEEEecccccCC---CceEEEEcCHHHHHHHHH---HHH-HcCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3468999874 467 45678877765532 000 12333333455555555666532 222344445677888
Q ss_pred HHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 343 KALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 343 ~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+.|+++ ..... ..+..+.++++.+. .... . +.++++.|.++||.+.+.+ +.+|++++..++++++++++++|
T Consensus 267 ~~L~~~-~~~~~-~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l 339 (347)
T 1jg8_A 267 LKLKEI-GYSVN-PEDVKTNMVILRTD-NLKV-N---AHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIF 339 (347)
T ss_dssp HHHHHH-TCBCC-GGGCCSSEEEEECT-TSSS-C---HHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHhc-Cceec-cCCCcceEEEEEcc-cccC-C---HHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 888766 32211 12345667766664 3111 1 3678999999999998864 78999998899999999999999
Q ss_pred HHHHHHh
Q psy14484 422 FQTFNEV 428 (430)
Q Consensus 422 ~~~l~~~ 428 (430)
++++.++
T Consensus 340 ~~~l~~~ 346 (347)
T 1jg8_A 340 EKLFRKF 346 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-23 Score=199.17 Aligned_cols=287 Identities=11% Similarity=0.091 Sum_probs=196.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..++++...++++.++++++.. +.+++++|++|++.+++.+.. +++.|++.++.||+........
T Consensus 47 ~~~~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~~~--------~g~~vl~~~~~~~~~~~~~~~~----- 111 (386)
T 1cs1_A 47 SRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFLK--------PGDLLVAPHDCYGGSYRLFDSL----- 111 (386)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHHHH-----
T ss_pred eCCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHhC--------CCCEEEEecCCcHhHHHHHHHH-----
Confidence 3566788899999999999644 444557779999999998743 5678999999998743211000
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
......+...++.+ |+++++++++ +++++|++++ ++|++|.+.+ +++|.++
T Consensus 112 ----~~~~g~~~~~~~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l 162 (386)
T 1cs1_A 112 ----AKRGCYRVLFVDQG-----------------DEQALRAALA---EKPKLVLVES-PSNPLLRVVD----IAKICHL 162 (386)
T ss_dssp ----HTTTSCEEEEECTT-----------------CHHHHHHHHH---TCCSEEEEEC-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHhcCCEEEEeCCC-----------------CHHHHHHhhc---cCCcEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 01111223344432 7899999997 4678899999 9999998876 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcH-HHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTD-KIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~-~~~~~~~~~~~~~~~~~~~t 307 (430)
|+++|+++|+||+|+++... .. . .+ .+|++ +++|.++++..++ |++++++ ++++.+.. ..+..+
T Consensus 163 ~~~~~~~li~De~~~~~~~~-~~--~-~~--~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~------~~~~~~ 230 (386)
T 1cs1_A 163 AREVGAVSVVDNTFLSPALQ-NP--L-AL--GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIG 230 (386)
T ss_dssp HHHTTCEEEEECTTTCTTTC-CG--G-GG--TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHT
T ss_pred HHHcCCEEEEECCCcccccC-Cc--c-cc--CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH------HHHhcC
Confidence 99999999999999866432 11 1 12 35555 7889998754566 8999986 78777654 223334
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
...+++++.++.++++.+ +...++..++.+.+.+.|+++.. .+.+. ..++.|.++.+.+. +.
T Consensus 231 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 307 (386)
T 1cs1_A 231 VTGGAFDSYLLLRGLRTL--VPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-GD 307 (386)
T ss_dssp CBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-SC
T ss_pred CCCCHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC-CC
Confidence 556888777766666533 22345566666677676655311 11111 12345888888876 42
Q ss_pred CccchhHHHHHHHHHHHCCcEEee---c----------------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~Gv~~~~---~----------------------------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
...+.+.|.++||.+.. + .+.+|++++...++++++.+.++|
T Consensus 308 -------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al 380 (386)
T 1cs1_A 308 -------EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGF 380 (386)
T ss_dssp -------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHH
Confidence 24577788888998863 1 378999999988888888777777
Q ss_pred HHH
Q psy14484 422 FQT 424 (430)
Q Consensus 422 ~~~ 424 (430)
+++
T Consensus 381 ~~~ 383 (386)
T 1cs1_A 381 RAA 383 (386)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=218.77 Aligned_cols=346 Identities=12% Similarity=0.013 Sum_probs=208.2
Q ss_pred cccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC----CC-CCeEEEcCCchHHHHHHHHHHHHh
Q psy14484 43 WWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ----YK-LGHCFYGSDGASAVEVALKMSFHY 117 (430)
Q Consensus 43 ~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~-~~~v~~~~sgteA~~~al~~~~~~ 117 (430)
.+....++.+|++++++.+++....+.....+..+.++.+++.+.+..+ .. +++|++|+||++|+..+++.+...
T Consensus 108 l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 108 YCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhh
Confidence 3344556678889888888776533332334455677788888865522 12 368999999999999999874221
Q ss_pred hhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC----CCCCCCCCChhHHHHHHHHHHHH
Q psy14484 118 WYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD----SRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 118 ~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
... .+++.|++.+++|+++........ .....++++. .+.. |+++|++
T Consensus 188 ~l~---~~gd~Viv~~p~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~~~------------d~~~l~~ 239 (533)
T 3f6t_A 188 HLL---KKGDKIAINEPIFTPYLRIPELKD-------------YELVEVDLHSYEKNDWEI------------EPNEIEK 239 (533)
T ss_dssp TSS---CTTCEEEEESSCCHHHHTSGGGGG-------------SEEEEECCCEETTTTSEE------------CHHHHHH
T ss_pred hcc---CCcCEEEEcCCCcHHHHHHHHHcC-------------CeEEEEEecCCcccCCCC------------CHHHHHH
Confidence 000 156789999999987643322211 1223444321 1222 7889998
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH-hcCCEEEEeccccCCCCcccccccccCCCCCceeeeecc
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN-NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 272 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~-~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~ 272 (430)
+++ +++++|+++. ++|++| ...+.+.+++|.++|+ +||+++|+||+|.++...+........+....+.+|||.
T Consensus 240 ~l~---~~~k~v~l~~-p~NPtG-~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~ 314 (533)
T 3f6t_A 240 LKD---PSIKALIVVN-PTNPTS-KEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKL 314 (533)
T ss_dssp HSC---TTEEEEEEES-SCTTTC-BCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHH
T ss_pred HhC---CCCeEEEEeC-CCCCCc-cccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCccc
Confidence 874 5788888877 888888 4567778999999999 689999999999987653322111112233456689999
Q ss_pred cC-CCccccEEEEEcHH-----HHHhhhcc-------------C-------------CcccccccCCCCCCHHHHHHHH-
Q psy14484 273 IT-GGYLPLSLVMTTDK-----IYNSIYYK-------------N-------------NINIFLHSHSYSGNPLACCAAL- 319 (430)
Q Consensus 273 l~-gG~~~ig~~~~~~~-----~~~~~~~~-------------~-------------~~~~~~~~~t~~~~~~~~~aa~- 319 (430)
++ .| +|+|+++++++ +++.+.+. . ..+......+.+.+++++.++.
T Consensus 315 ~g~~G-~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~ 393 (533)
T 3f6t_A 315 FGCTG-WRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEAL 393 (533)
T ss_dssp HTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHH
T ss_pred CCCcc-cceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 97 46 89999999876 43332100 0 0011223344555666665521
Q ss_pred HHHHHHh-------h----cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCC--ccchh--------
Q psy14484 320 ATLEIFN-------K----DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP--EQIET-------- 378 (430)
Q Consensus 320 ~~l~~~~-------~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~-------- 378 (430)
.++..+. . +...++++++.+.+.+.|. + +.....+..|.+.++.+. .-. ....+
T Consensus 394 ~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~---~~~~~~~~~g~~~~~~l~-~~~~~~~g~~~~~~~~~~ 468 (533)
T 3f6t_A 394 FSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A---PKDETDTNTHYYSLIDIY-RLAEKIYGKEFRDYLTNN 468 (533)
T ss_dssp HHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C---CCCCSTTBCCSEEEEEHH-HHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C---CccccCCCceEEEEEehH-hhhhhccchHHHHHhhcc
Confidence 1223221 1 2234455556666666664 2 221111233444444443 100 00000
Q ss_pred -HHHHHHHHH-HHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 379 -FSKKFFVAA-LKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 379 -~a~~~~~~l-~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
...+++..+ .++||.+.|+ .+++|++++ .++++++++++++|.+++.+.
T Consensus 469 ~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 469 FEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp CCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHH
Confidence 023455554 4779998874 368999874 368999999999999998764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=209.00 Aligned_cols=331 Identities=13% Similarity=0.086 Sum_probs=215.4
Q ss_pred CCHHHHHHHHHHHhhccc-----cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHH-HhhhhcC
Q psy14484 51 SNSYINKALKNQLNKLEH-----VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSF-HYWYNKG 122 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~-~~~~~~g 122 (430)
-++++++++.+.+..... +....+..++++++++.+.+..+ .++++|++|+|+++|+..++++++ .
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------ 180 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN------ 180 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS------
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC------
Confidence 466788777777766321 11112233566677777765543 567899999999999999999875 3
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---C
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---H 199 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~ 199 (430)
+++.|++.+++|+++.......+. ....++.+...... .|+++|++++++. .
T Consensus 181 --~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~----------~d~~~l~~~l~~~~~~~ 235 (500)
T 3tcm_A 181 --EKDGILVPIPQYPLYSASIALHGG-------------ALVPYYLNESTGWG----------LETSDVKKQLEDARSRG 235 (500)
T ss_dssp --TTEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBTTTTSB----------CCHHHHHHHHHHHHHTT
T ss_pred --CCCEEEEeCCCcHhHHHHHHHcCC-------------EEEEEecccccCCC----------CCHHHHHHHHHHHHhcC
Confidence 568899999999877554433222 22333333211100 1889999999753 1
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--cccc----ccCCC---CCc-ee--
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFAC----EHAEI---WPD-FL-- 267 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~~----~~~~~---~~d-~~-- 267 (430)
.++++|++.. ++|++| ...+.+.+++|.++|++||+++|+||+|.++.+.+. ...+ ..++. ..+ ++
T Consensus 236 ~~~k~ivl~~-p~NPtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~ 313 (500)
T 3tcm_A 236 INVRALVVIN-PGNPTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQ 313 (500)
T ss_dssp CEEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEE
T ss_pred CCceEEEEEC-CCCCCc-ccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEe
Confidence 2577777777 788888 566778899999999999999999999997654321 1111 11211 122 33
Q ss_pred eeeccc-C-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-hcCH
Q psy14484 268 CLSKGI-T-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDNI 330 (430)
Q Consensus 268 ~~sK~l-~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~-----------~~~-~~~~ 330 (430)
+|||++ + .| +|+|++++ ++++++.+.. ....+++.+.+++.++..+++ ..+ .+..
T Consensus 314 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 385 (500)
T 3tcm_A 314 SVSKGYYGECG-KRGGYFEITGFSAPVREQIYK-------IASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGI 385 (500)
T ss_dssp ESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHH-------HHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHH
T ss_pred cCCccCCCCCc-cceEEEEEeCCCHHHHHHHHH-------HHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHH
Confidence 789998 4 36 79999998 8888887765 123455667777777766664 111 2345
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCcc--------chhHHHHHH-HHHHHCCcEEeec---
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQ--------IETFSKKFF-VAALKNELLLRPI--- 397 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~--------~~~~a~~~~-~~l~~~Gv~~~~~--- 397 (430)
.++++++.+++.+.|+++ +++....++|.++.+ .+. ..... ..+ ...++ +.|.+.||.+.|+
T Consensus 386 ~~~l~~~~~~l~~~L~~~---~g~~~~~~~g~~~~~~~~~-lp~~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pg~~f 460 (500)
T 3tcm_A 386 LASLARRAKALEHAFNKL---EGITCNEAEGAMYVFPQIC-LPQKAIEAAKAANKAP-DAFYALRLLESTGIVVVPGSGF 460 (500)
T ss_dssp HHHHHHHHHHHHHHHHTS---TTEECCCCCBTTEECCEEC-CCHHHHHHHHHHTSCH-HHHHHHHHHHHHCEECEESTTT
T ss_pred HHHHHHHHHHHHHHHhcC---CCcEEecCCeEEEEeeeec-CchhhHHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCccc
Confidence 566777777888887765 455545556665554 232 11000 000 12233 4556779999874
Q ss_pred -----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 -----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 -----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
...+|++++ ++++++++++++|+++++++.
T Consensus 461 ~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 461 GQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHEAFM 495 (500)
T ss_dssp CCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHH
Confidence 146899877 899999999999999988654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-23 Score=204.25 Aligned_cols=352 Identities=10% Similarity=0.093 Sum_probs=212.9
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCC----CCHHHHHHHHHHHhhcCCCC-CeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL----THKPVIKLSEKLSSLTQYKL-GHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~-~~v~~~~sgteA 106 (430)
.+..|+|+..+ +..+|.+.+++.....+.. ..... ......+++++++++++.+. +.++|++||++|
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~--~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a 170 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQS--MDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQS 170 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCC--TTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhccc--ccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHH
Confidence 44566665543 2346777777765443211 11111 12344566778999987544 789999999999
Q ss_pred HHHHHHHHHHhhh---------hcCCCC--Cc-EEEEEcCCCCCcchhhhccCCCccchhhhhccCC-CeeEeCCCCCCC
Q psy14484 107 VEVALKMSFHYWY---------NKGFLN--KK-KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLN-KTYIITTPDSRN 173 (430)
Q Consensus 107 ~~~al~~~~~~~~---------~~g~~~--~~-~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 173 (430)
+..++++++.+.. ..|.+. ++ .|++ +...|.+...+....+. .. .++.++.+..++
T Consensus 171 ~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~-s~~~h~s~~~~~~~~g~----------g~~~v~~v~~~~~~~ 239 (497)
T 2qma_A 171 NQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVC-SKKSHFTVQKSASWMGL----------GEKAVMTVDANADGT 239 (497)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEE-ETTSCTHHHHHHHHTTS----------CGGGEEEECBCTTSS
T ss_pred HHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEE-CCCchHHHHHHHHHcCC----------CcccEEEEecCCCCc
Confidence 9999999865322 123221 24 4554 44455443332222211 01 234555543333
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
. |+++|++++++. ...+.+|+++. +++++|.+.| +++|.++|++||+++|+|++|+++..
T Consensus 240 ~------------d~~~L~~~i~~~~~~~~~~~~vv~~~-~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~ 302 (497)
T 2qma_A 240 M------------DITKLDEVIAQAKAEGLIPFAIVGTA-GTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALI 302 (497)
T ss_dssp B------------CGGGHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGG
T ss_pred C------------CHHHHHHHHHHHHHCCCcceEEEEcC-CCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHH
Confidence 3 778888888753 11245777777 7888898777 99999999999999999999997654
Q ss_pred cccccccccCCC-CCceeee--ecccCCCccccEEEEEcHHH-HHhhhccCCccccc-ccCCCCCCHHH----------H
Q psy14484 251 TGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFL-HSHSYSGNPLA----------C 315 (430)
Q Consensus 251 ~g~~~~~~~~~~-~~d~~~~--sK~l~gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~-~~~t~~~~~~~----------~ 315 (430)
... +.....++ .+|++++ +|.++++ .++|+++++++. ++.+.. ...+. ...+..+++.. .
T Consensus 303 ~~~-~~~~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~~~~~~~~~~~---~~~yl~~~~~~~~~~~~~~~~~~r~~~a 377 (497)
T 2qma_A 303 LSS-HKSRLKGVERAHSISVDFHKLFYQT-ISCGALLVNDKSNFKFLLH---HADYLNREHDELPNLVDKSIATTKRFDA 377 (497)
T ss_dssp GST-TGGGGTTGGGCSEEEEETTTTTCCC-SSCEEEEESCGGGGGGGCC-----------------------CCSCCCTH
T ss_pred hCc-chHhhcCcccCCEEEEcchhccCCC-cceEEEEEeCHHHHHHhcC---CchhcCCccccCCCccccCCCCCCchhH
Confidence 333 22223355 6788876 7988877 589999987543 443322 00111 01110111111 1
Q ss_pred HHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 316 CAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 316 ~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
.+..++++.+.. ++..++..++++++.+.|+++ +.+.- .++.+.++.|.+. +.......+..++.+.|.++|
T Consensus 378 l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~---~~~~~~~~~~~~~v~f~~~-~~~~~~~~l~~~l~~~l~~~G 453 (497)
T 2qma_A 378 LKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN---DQFELLAEPSLSTVLFRAT-HETADLDELNKALRLEALTRG 453 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC---TTEEECSCCSSSEEEEEEC-CSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC---CCeEEEcCCCceEEEEEEc-CCccCHHHHHHHHHHHHHhCC
Confidence 123344554432 245566777888888888765 33221 1345667777776 422111223456788899999
Q ss_pred cEEeec----C-CEEEEeC-CCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 392 LLLRPI----G-NTVYLMP-PYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 392 v~~~~~----~-~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+.+. + .++||++ +..+|++++++++++|++++.++
T Consensus 454 ~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 454 IAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp SCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 887642 2 5799997 88999999999999999998764
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=209.49 Aligned_cols=333 Identities=10% Similarity=0.020 Sum_probs=213.5
Q ss_pred CCCHHHHHHHHHHHhhccccccCC-C----CCHHHHHHHHHHHhhcCCC--CCeEEEcCCchHHHHHHHHHHHHhhhhc-
Q psy14484 50 HSNSYINKALKNQLNKLEHVMLSN-L----THKPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWYNK- 121 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~~~~~~~~~-~----~~~~~~~l~~~l~~~~~~~--~~~v~~~~sgteA~~~al~~~~~~~~~~- 121 (430)
++++.+.+++.+++.......... . ......+++++++++++.+ .+.+++++||++|+..++++++.+...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 356899999999887643221111 1 1245567888899998765 6789999999999999999998754322
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
|. .++.|++..++|..+... .... ..+.+.++.+. .++. |+++|+++++ +
T Consensus 155 g~-~~~~Vi~~~~~h~~~~~~-~~~~------------G~~~~~v~~~~~~~~~------------d~~~l~~~i~---~ 205 (497)
T 3mc6_A 155 GI-TEPEIIAPVTAHAGFDKA-AYYF------------GMKLRHVELDPTTYQV------------DLGKVKKFIN---K 205 (497)
T ss_dssp CC-SSCEEEEETTSCHHHHHH-HHHS------------CCEEEEECBCTTTCSB------------CTTTTGGGCC---S
T ss_pred CC-CCceEEEeCCccHHHHHH-HHHc------------CCeEEEEecCcccCcC------------CHHHHHHHHh---h
Confidence 22 245777777666543222 2212 22334555443 2222 7788888885 4
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc-------cc--ccccccCCCCCceeeee-
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT-------GK--FFACEHAEIWPDFLCLS- 270 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~-------g~--~~~~~~~~~~~d~~~~s- 270 (430)
++++|+++. +++++|.+.+ +++|.++|++||+++|+||+|+++.+. |. .+.....+ .|+++++
T Consensus 206 ~~~~v~~~~-p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g--~d~~~~s~ 278 (497)
T 3mc6_A 206 NTVLLVGSA-PNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPG--VTSISCDT 278 (497)
T ss_dssp SEEEEEEET-TCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTT--CCEEEEET
T ss_pred CCEEEEEEC-CCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCC--CcEEEECc
Confidence 689999998 9999998877 889999999999999999999854321 11 12222333 4666555
Q ss_pred -cccCCCccccEEEEEcHHHHHhhhcc---CCcccccccCCCCC--CHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHH
Q psy14484 271 -KGITGGYLPLSLVMTTDKIYNSIYYK---NNINIFLHSHSYSG--NPLACCAALATLEIFNK---DNILQRISQDMKKI 341 (430)
Q Consensus 271 -K~l~gG~~~ig~~~~~~~~~~~~~~~---~~~~~~~~~~t~~~--~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l 341 (430)
|.+.++ .++|+++++++.+...... ..........++.+ .....++..++++.+.. .+..++..++.+++
T Consensus 279 ~K~l~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l 357 (497)
T 3mc6_A 279 HKYGFAP-KGSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKF 357 (497)
T ss_dssp TTTTCCC-SSCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCC-CCceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 877666 6899999987665433210 00000000111111 12223344445554443 34556677788888
Q ss_pred HHHHHc-hhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHH
Q psy14484 342 TKALTS-LITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 342 ~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~ 418 (430)
++.|++ +.....+ ..+.+.++.+... . . . +.++.+.|.++||.+.... ..+|++++ .++++++++++
T Consensus 358 ~~~L~~~~~g~~~~--~~~~~~~v~~~~~-~-~---~--~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~ 427 (497)
T 3mc6_A 358 KKYIQENIPDLDIM--GNPRYSVISFSSK-T-L---N--IHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEIC 427 (497)
T ss_dssp HHHHHHSCTTCEEC--SCCCSSEEEEECT-T-T---T--HHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHH
T ss_pred HHHHHhcCCCEEEe--cCCCeeEEEEeCC-C-C---C--HHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHH
Confidence 888876 3332221 1345566666443 2 1 1 3679999999999887653 57899988 78999999999
Q ss_pred HHHHHHHHHhh
Q psy14484 419 SAIFQTFNEVI 429 (430)
Q Consensus 419 ~~l~~~l~~~~ 429 (430)
++|++++.++.
T Consensus 428 ~~L~~~l~~~~ 438 (497)
T 3mc6_A 428 DILRTTVQELK 438 (497)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999987653
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=202.92 Aligned_cols=339 Identities=10% Similarity=0.015 Sum_probs=204.9
Q ss_pred EEEecccccccccCCCC--CHHHHHHHHHHHhh-cccccc-CCCCCHHHHHHHHHHHhhcC--CCCCeEEE--cCCchHH
Q psy14484 35 RYLDAISSWWVNLFGHS--NSYINKALKNQLNK-LEHVML-SNLTHKPVIKLSEKLSSLTQ--YKLGHCFY--GSDGASA 106 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~l~~~l~~~~~--~~~~~v~~--~~sgteA 106 (430)
.++||..|......++. .|.+.+++.+.... ....+. ..+..++++.+++.+.+..+ .++++|++ |+||++|
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~a 108 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGS 108 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHH
Confidence 37888877432333432 24677777776543 111111 12223455556565554332 23789977 9999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 184 (430)
+..++++++... .+++.|++.+|+|+++.......+ .....++.. ..+..
T Consensus 109 l~~~~~~l~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~---------- 160 (401)
T 7aat_A 109 LRVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAG-------------LQLQAYRYYDPKTCSL---------- 160 (401)
T ss_dssp HHHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTT-------------CEEEEEECEETTTTEE----------
T ss_pred HHHHHHHHHHhc-----cCCCEEEEcCCCchhHHHHHHHcC-------------CeeEeeeeeccccCcc----------
Confidence 999998776321 156889999999998754433322 122333332 11222
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---cccccc-C
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACEH-A 260 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~~~-~ 260 (430)
|++.+++.+++.+++++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|.+++..+. ...... .
T Consensus 161 --d~~~l~~~l~~~~~~~~~v~i~~-p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~ 236 (401)
T 7aat_A 161 --DFTGAMEDISKIPEKSIILLHAC-AHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI 236 (401)
T ss_dssp --CHHHHHHHHTTSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred --CHHHHHHHHHhCCCCcEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHH
Confidence 77888888876556778888888 899999 567788899999999999999999999998866442 111111 1
Q ss_pred CCCCc---eeeeecccCC-CccccEEEEE---cHHH----HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH--H--
Q psy14484 261 EIWPD---FLCLSKGITG-GYLPLSLVMT---TDKI----YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI--F-- 325 (430)
Q Consensus 261 ~~~~d---~~~~sK~l~g-G~~~ig~~~~---~~~~----~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~--~-- 325 (430)
+..++ +.+|||.++. | +|+|++++ +++. ...+.. .....+.+.+..++.++...++. +
T Consensus 237 ~~~~~~i~~~S~sK~~~~~G-~RiG~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 309 (401)
T 7aat_A 237 EQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQLKI------LIRPMYSNPPMNGARIASLILNTPELRK 309 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred hcCCcEEEEecCCccccccc-CceEEEEEEeCCHHHHHHHHHHHHH------HHHhccCCCChHHHHHHHHHhCCHHHHH
Confidence 22233 3579999984 6 89999886 5553 233322 12223334445555555444421 0
Q ss_pred ---h-hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEE
Q psy14484 326 ---N-KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTV 401 (430)
Q Consensus 326 ---~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~l 401 (430)
+ .+...++++++.+++.+.|+++...+.+....+.+.++.+.-. + ...+...+.++||.+.++ +
T Consensus 310 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~ll~~~gi~v~~~---~ 377 (401)
T 7aat_A 310 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL-K--------PEQVERLTKEFSIYMTKD---G 377 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCC-C--------HHHHHHHHHHHCEECCTT---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCC-C--------HHHHHHHHHhCCEeccCC---C
Confidence 1 1334566777777888888765211122223344555444211 1 133433446779998754 5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
|++++.. ++++|++++++|++++
T Consensus 378 Ris~~~~-~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 378 RISVAGV-ASSNVGYLAHAIHQVT 400 (401)
T ss_dssp EEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred eEEeccC-ChhhHHHHHHHHHHHh
Confidence 8988754 4455999999998875
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=205.74 Aligned_cols=332 Identities=10% Similarity=0.061 Sum_probs=206.9
Q ss_pred CEEEecccccccccCC-CCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc-CCC-----CCeEE--EcCCch
Q psy14484 34 KRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT-QYK-----LGHCF--YGSDGA 104 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~-----~~~v~--~~~sgt 104 (430)
..++||..|. +++ .++|.+.+++.++....... +.......++++.+++.+ +.. .++|. .+++|+
T Consensus 41 ~~~i~l~~g~---~~d~~~~~~v~~a~~~a~~~~~~~---y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ 114 (409)
T 4eu1_A 41 KRKVNLSIGV---YRDDADQPFVLECVKQATLGTNMD---YAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGT 114 (409)
T ss_dssp SSCEECCCSS---CCCTTSCCCCCHHHHTCCCCSCCC---CCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHH
T ss_pred cCceeeeeeE---EECCCCCEeecHHHHhcCcccccc---CCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccch
Confidence 4688988763 323 35778888888772221111 112222234444444433 222 56774 499999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANE 182 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 182 (430)
+|++.+..++.... .+++.|++.+|+|+++.......+ .....++.. +.+..
T Consensus 115 ga~~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~-------- 168 (409)
T 4eu1_A 115 GALRIGGDLLNRFV-----ANCNRIYGPDVGYPNHESIFAKAG-------------MELTPYSYYDPATKGL-------- 168 (409)
T ss_dssp HHHHHHHHHGGGTS-----SSCCEEEEESSCCTHHHHHHHHTT-------------CEEEEECCEETTTTEE--------
T ss_pred HHHHHHHHHHHHhc-----CCCCEEEEeCCCcHhHHHHHHHcC-------------CeEEEEEeecCcCCcC--------
Confidence 99998876554332 145899999999987744433322 122334431 11222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---cccc-c
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFAC-E 258 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~-~ 258 (430)
|+++|++.+++++++.+++++.. ++|++| ..++.+.+++|.++|++||+++|+||+|.++.+.+. .... .
T Consensus 169 ----d~~~l~~~l~~~~~~~~~i~~~~-p~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 242 (409)
T 4eu1_A 169 ----NLAGMLECLDKAPEGSVILVHAC-AHNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRH 242 (409)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred ----cHHHHHHHHHhCCCCcEEEEECC-CCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHH
Confidence 88999999986545566777666 778888 566778899999999999999999999998876541 1121 1
Q ss_pred cCCCCCcee---eeecccC-CCccccEEE---EEcHH----HHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH--
Q psy14484 259 HAEIWPDFL---CLSKGIT-GGYLPLSLV---MTTDK----IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF-- 325 (430)
Q Consensus 259 ~~~~~~d~~---~~sK~l~-gG~~~ig~~---~~~~~----~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~-- 325 (430)
..+..++++ +|||.++ .| +|+|++ +.+++ +.+.+.. .....+++.+++++.++.++|+..
T Consensus 243 ~~~~~~~~i~~~S~SK~~g~~G-~riG~~~~v~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (409)
T 4eu1_A 243 LVDMVPNLIVAQSFSKNFGLYG-HRCGALHISTASAEEAKRLVSQLAL------LIRPMYNNPPLYGAWVVSSILKDPQL 315 (409)
T ss_dssp HHTTSSCCEEEEECTTTSSCGG-GCCEEEEEECSSHHHHHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHCHHH
T ss_pred HHhhCCcEEEEecCcccccCcc-CCceEEEEEeCCHHHHHHHHHHHHH------HHhhhcCCCChHHHHHHHHHhCCHHH
Confidence 123344543 7999998 46 899996 45666 5444433 223445566778887777777621
Q ss_pred -----h-hcCHHHHHHHHHHHHHHHHHchhcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec
Q psy14484 326 -----N-KDNILQRISQDMKKITKALTSLITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI 397 (430)
Q Consensus 326 -----~-~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~ 397 (430)
+ .+...++++++.+++.+.|+++ ..+. +....+.|.++.+.-. . .+++..++ ++||.+.|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------~----~~~~~~ll~~~gv~v~p~ 384 (409)
T 4eu1_A 316 TALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQVGMMAYTGL------T----REQVELLRSEYHIYMTLN 384 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHSCSSEEECCC------C----HHHHHHHHHHHCEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecCCceEEEEeCC------C----HHHHHHHHHcCCEEEcCC
Confidence 1 2345567777788888888765 2121 2223344555444211 1 23455555 569999876
Q ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 398 GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 398 ~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+ ||+++ ..+++++++++++|++++
T Consensus 385 ~---Ri~~~-~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 G---RAAVS-GLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp C---EEEGG-GCCTTTHHHHHHHHHHHH
T ss_pred C---EEEEE-ecCHhhHHHHHHHHHHHh
Confidence 3 78776 456677999999998875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=203.05 Aligned_cols=319 Identities=10% Similarity=0.055 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHHhhccccccCCCC--CHHHHHHHHHHHhhcCC----CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLT--HKPVIKLSEKLSSLTQY----KLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~----~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
-+|++.+++.+.... + +.+ .....++++.+++.+.. +++++++++||++|++.+++.+... . .
T Consensus 16 ~~~~v~~a~~~~~~~--~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~----~-~ 84 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG--H----TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS----K-A 84 (385)
T ss_dssp CCHHHHHTTSCCCCC--T----TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT----T-C
T ss_pred chHHHHHHHhccccc--c----CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc----C-C
Confidence 357777776654321 1 111 12345566667766642 3579999999999999999987510 0 0
Q ss_pred CCcEEEEE-cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 125 NKKKFICL-QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 125 ~~~~vl~~-~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++.|+++ .+.||.+....... .......++. +..... |+++|++++++ .++
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~------------~g~~~~~v~~~~~~~~~------------d~~~l~~~l~~--~~~ 138 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRS------------YGAQVDVVRPLKIGESV------------PLELITEKLSQ--NSY 138 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHH------------TTCEEEEECCSSTTSCC------------CHHHHHHHHHH--SCC
T ss_pred CCCeEEEEcCCcchHHHHHHHHH------------cCCceEEEecCCCCCCC------------CHHHHHHHHhc--CCC
Confidence 45677777 45666542111111 1123345555 332222 88999999974 357
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCcc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYL 278 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~ 278 (430)
++|++++ ++|++|.+.+ +++|.++|++| |+++|+||+|+ ++.. .+.+. ...+|+++ ++|.++|+ .
T Consensus 139 ~~v~~~~-~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~-~ 207 (385)
T 2bkw_A 139 GAVTVTH-VDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAP-A 207 (385)
T ss_dssp SEEEEES-EETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCC-S
T ss_pred CEEEEEc-cCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCc--ccccc--ccCceEEEecCccccccC-C
Confidence 7888899 9999998877 99999999999 99999999997 4322 12222 23467765 46988765 4
Q ss_pred ccEEEEEcHHHHH-hhhc-----c---C--------Cccccccc--C-CCCCCHHHHHHHHHHHHHHhh---cCHHHHHH
Q psy14484 279 PLSLVMTTDKIYN-SIYY-----K---N--------NINIFLHS--H-SYSGNPLACCAALATLEIFNK---DNILQRIS 335 (430)
Q Consensus 279 ~ig~~~~~~~~~~-~~~~-----~---~--------~~~~~~~~--~-t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~ 335 (430)
++|++++++++++ .+.. . + ....+..+ . ..+.++.++.++.++++.+.+ +...++++
T Consensus 208 G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 287 (385)
T 2bkw_A 208 GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHR 287 (385)
T ss_dssp CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 6799999988776 4420 0 0 00001111 1 134677777777778876543 34567778
Q ss_pred HHHHHHHHHH-HchhcCCCeeeEe---ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEe-
Q psy14484 336 QDMKKITKAL-TSLITHPKIINFR---QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLM- 404 (430)
Q Consensus 336 ~~~~~l~~~l-~~l~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~- 404 (430)
++.+++.+.| +++ ......... ..+.++++.+. + ..++.+.|.++||.+.++ .+++|++
T Consensus 288 ~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~ 357 (385)
T 2bkw_A 288 EMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA-D--------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGH 357 (385)
T ss_dssp HHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS-C--------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECC
T ss_pred HHHHHHHHHHHHhc-CceecccCcccccCCceEEEecC-C--------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEc
Confidence 8888898888 765 222111000 24667777665 3 357889999999999874 3689998
Q ss_pred CC---CCCCHHHHHHHHHHHHHHHHH
Q psy14484 405 PP---YILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 405 ~~---~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++ +.++++++++++++|++++++
T Consensus 358 ~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 358 MGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp CGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred cccccccCCHHHHHHHHHHHHHHHHh
Confidence 54 357999999999999988754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=197.34 Aligned_cols=307 Identities=12% Similarity=0.044 Sum_probs=200.4
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 46 NLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 46 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
..++|.+|+..+++.+ ....+. ......+...++++.+++.++ .+++++++||++|++.+++.+.. +
T Consensus 28 ~~~~~~~~~~~~~~~~--~~~~~~-y~~~~~~~~~~l~~~la~~~g--~~~~~~~~~gt~a~~~al~~l~~--------~ 94 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA--TGEGYV-YARQKDPTAKALEERLKALEG--ALEAVVLASGQAATFAALLALLR--------P 94 (412)
T ss_dssp SBCCCSSHHHHHHHHH--HCCSCS-BTTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCC--------T
T ss_pred ceeecCChHHHHHHhc--cccCcC-cCCCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------C
Confidence 3577887766655443 222221 223455788999999999995 45899999999999999997743 5
Q ss_pred CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
++.|++.++.|++.......... ....+..+++. |+++|+++++ +++++|
T Consensus 95 gd~vi~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~------------------~~~~l~~~i~---~~~~~v 144 (412)
T 2cb1_A 95 GDEVVAAKGLFGQTIGLFGQVLS---------LMGVTVRYVDP------------------EPEAVREALS---AKTRAV 144 (412)
T ss_dssp TCEEEEETTCCHHHHHHHHHTTT---------TTTCEEEEECS------------------SHHHHHHHCC---TTEEEE
T ss_pred CCEEEEeCCCchhHHHHHHHHHH---------HcCCEEEEECC------------------CHHHHHHHhc---cCCeEE
Confidence 67899999988764322111000 01122233322 4688888885 578999
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEE
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLV 283 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~ 283 (430)
++++ ++|++|.+.+ +++|.++|++||+++|+||+|++++.... .....+|+++ ++|.++++..++|++
T Consensus 145 ~~~~-~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~~-----~~~~~~di~~~S~~K~~~~~~~~~G~~ 214 (412)
T 2cb1_A 145 FVET-VANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALCR-----PLAWGAHVVVESLTKWASGHGSVLGGA 214 (412)
T ss_dssp EEES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSCC-----GGGGTCSEEEEETTTTTTCSSCCCCEE
T ss_pred EEeC-CCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccCC-----ccccCCeEEEECCcccccCCCCcEEEE
Confidence 9999 9999998877 99999999999999999999985522211 1223578775 779998743689988
Q ss_pred EEcH-H---------------------------HHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHH
Q psy14484 284 MTTD-K---------------------------IYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFNKDNILQRI 334 (430)
Q Consensus 284 ~~~~-~---------------------------~~~~~~~~~~~~~~~-~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~ 334 (430)
++.+ + +.+.++. .. .......++..++.+...++.+ +...++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~------~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~ 286 (412)
T 2cb1_A 215 VLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRT------LGLSLCGMALSPFNAYLLFQGLETV--ALRVARM 286 (412)
T ss_dssp EEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHH------HHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHH
T ss_pred EEeccccccccccccccccccccchhhccchHHHHHHHHH------HHHHhcCCCCChHHhHHHHcCCchH--HHHHHHH
Confidence 7654 2 2222222 11 1112234566665555555433 2334555
Q ss_pred HHHHHHHHHHHHchhcCCCee--e-------------EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--
Q psy14484 335 SQDMKKITKALTSLITHPKII--N-------------FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~--~-------------~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
.++.+++.+.|.+......+. . .++.|.++.|.+. + ...+.+.|.+.|+.+ ..
T Consensus 287 ~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~-~--------~~~~~~~l~~~~i~~-~~s~ 356 (412)
T 2cb1_A 287 SETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLG-D--------LERASRFLGAIRLLK-AANL 356 (412)
T ss_dssp HHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECS-S--------HHHHHHHHHHCSSEE-CSCC
T ss_pred HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeC-C--------HHHHHHHHHhCCeee-eccc
Confidence 677888888887642222110 0 0245777777663 2 245666677778876 22
Q ss_pred -----------------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 398 -----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 398 -----------------------------~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.+.+|++++..+++++|+.++++|++
T Consensus 357 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 357 GDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 36899999999999999999988864
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=198.13 Aligned_cols=283 Identities=13% Similarity=0.103 Sum_probs=196.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++++ .+++++++||++|++.+++.+.. ++++|++..+.|++........
T Consensus 62 r~~~~~~~~l~~~la~~~g--~~~~~~~~sGt~A~~~al~~~~~--------~gd~Vi~~~~~y~~~~~~~~~~------ 125 (392)
T 3qhx_A 62 RTGNPTRTALEAALAAVED--AAFGRAFSSGMAAADCALRAMLR--------PGDHVVIPDDAYGGTFRLIDKV------ 125 (392)
T ss_dssp TTCCHHHHHHHHHHHHHTT--CSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHHHT------
T ss_pred CCCChHHHHHHHHHHHHhC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEeCCCcchHHHHHHHH------
Confidence 4567888999999999985 45899999999999999997743 5688999999998753322111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
+.....++.+++.+ |+++++++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 126 ---~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~la 177 (392)
T 3qhx_A 126 ---FTGWNVEYTPVALA-----------------DLDAVRAAIR---PTTRLIWVET-PTNPLLSIAD----IAGIAQLG 177 (392)
T ss_dssp ---GGGGTCEEEEECTT-----------------CHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred ---HHhcCcEEEEeCCC-----------------CHHHHHHhhC---CCCeEEEEEC-CCCCCcEEec----HHHHHHHH
Confidence 11122334455443 7899999885 5799999999 9999998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCc-cccEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~-~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
++||+++|+||+|+.. .. ....+..+|+++ ++|.+++++ .++|+++.+ +++.+.+.. ..+..+.
T Consensus 178 ~~~g~~li~D~~~~~~-~~-----~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~------~~~~~g~ 245 (392)
T 3qhx_A 178 ADSSAKVLVDNTFASP-AL-----QQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAF------LQNGAGA 245 (392)
T ss_dssp HHHTCEEEEECTTTCT-TT-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHHHHCC
T ss_pred HHcCCEEEEECCCccc-cc-----CChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHH------HHHhcCC
Confidence 9999999999999732 21 122244578776 889998743 578999997 577776654 2333456
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeE------------------eecceEEEEEEee
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVII 370 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~ 370 (430)
..+++.+.++...++.+. ...++..++.+++.+.|++. +.+..+ ++.|.++++++.
T Consensus 246 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~~~~l~~~L~~~---~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~- 319 (392)
T 3qhx_A 246 VPGPFDAYLTMRGLKTLV--LRMQRHSENAAAVAEFLAEH---PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMR- 319 (392)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET-
T ss_pred CCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcC---CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeC-
Confidence 677887777766665432 23455566666777777643 222211 556889999997
Q ss_pred cCCccchhHHHHHHHHHHHCCcEEe----------e---------------cCCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 371 EDPEQIETFSKKFFVAALKNELLLR----------P---------------IGNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 371 ~~~~~~~~~a~~~~~~l~~~Gv~~~----------~---------------~~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+. ..+..+.+.|...|+.+. | ..+.+||+++...+++.++.+.++|
T Consensus 320 ~~~----~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 320 AGR----TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp TCH----HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CcH----HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 421 124567777665554332 2 1357999988877777776666554
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-23 Score=202.60 Aligned_cols=331 Identities=13% Similarity=0.095 Sum_probs=211.5
Q ss_pred CCCCCHHHHHHHHHHHhhccccc---cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC-
Q psy14484 48 FGHSNSYINKALKNQLNKLEHVM---LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF- 123 (430)
Q Consensus 48 lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~- 123 (430)
.+|.+|++.+++.+....++.+. ...+..+...++++++++.++.+. .+++++||++|+..|+++++.+...+|.
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~~~~~~~~~~Gd~ 153 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGILIIRAYHEDRGEG 153 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34677999888876522111000 001112567889999999986442 4668899999999999888765444554
Q ss_pred CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 124 ~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++++|++.+ .+|+....+....+ .+++.++.+.++.. |+++|+++++ ++++
T Consensus 154 ~~r~~Vlv~~-~~h~~~~~~~~~~G------------~~vv~v~~~~~~~~------------d~~~L~~~i~---~~t~ 205 (474)
T 1wyu_B 154 RTRRVVLVPD-SAHGSNPATASMAG------------YQVREIPSGPEGEV------------DLEALKRELG---PHVA 205 (474)
T ss_dssp TTCCEEEEET-TSCTHHHHHHHHTT------------CEEEEECBCTTSSB------------CHHHHHHHCS---TTEE
T ss_pred cCCCEEEEeC-CcChhhHHHHHHCC------------CEEEEecCCCCCCc------------CHHHHHHhhC---CCce
Confidence 3556788776 55565444433222 23345554433322 8899999985 5688
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCC----Cc
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITG----GY 277 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~g----G~ 277 (430)
+|++++ ++ ++|.+. +.+++|.++|++||+++|+||+|... ..|.. ....+ .+|++++ +|.+++ |+
T Consensus 206 ~v~~~~-pn-~~G~~~---~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~~-~~~~~--g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 206 ALMLTN-PN-TLGLFE---RRILEISRLCKEAGVQLYYDGANLNA-IMGWA-RPGDM--GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp EEEECS-SC-TTSCCC---TTHHHHHHHHHHHTCEEEEEGGGGGG-TTTTC-CHHHH--TCSEEECCTTTTTCCCCTTSC
T ss_pred EEEEEC-CC-CCcccC---CCHHHHHHHHHHcCCEEEEeCchhhh-hccCC-CcccC--CCcEEEEeCccccccCCCCCC
Confidence 888887 75 578662 22999999999999999999999632 22211 11112 3788876 798753 23
Q ss_pred cccEEEEEcHHHHHhhhcc-----CC--------cccccccCCCCCCHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHH
Q psy14484 278 LPLSLVMTTDKIYNSIYYK-----NN--------INIFLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKI 341 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~-----~~--------~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~---~~~~~~~~~~l 341 (430)
.++|++++++++++.+... +. ........+++++++++.++.+.++.+..+.+ .+++.++++++
T Consensus 277 ~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l 356 (474)
T 1wyu_B 277 PGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYL 356 (474)
T ss_dssp CCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999887766410 00 00000112344678888888888875443333 66777888888
Q ss_pred HHHHHchhcCCCeeeEeecceE--EEEEEeecCCccchhHHHHHHHHHHHCCcEEee------cCCEEEEeCCCCCCHHH
Q psy14484 342 TKALTSLITHPKIINFRQKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRP------IGNTVYLMPPYILNKNE 413 (430)
Q Consensus 342 ~~~l~~l~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~------~~~~lR~~~~~~~t~e~ 413 (430)
.+.|+++ ...... +.+.+ +.+.+. .+. . +..++++|.++||.+.. ..+.+||+++..+++++
T Consensus 357 ~~~L~~~-g~~~~~---~~~~~~~~~~~~~-~~~--~---~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~ 426 (474)
T 1wyu_B 357 KELLKEK-GYRVPY---DGPSMHEFVAQPP-EGF--R---ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKET 426 (474)
T ss_dssp HHHHHHT-TCBCSS---CSSCCSCEEEBCS-TTC--C---HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHH
T ss_pred HHHHhhc-CcEecC---CCCcceEEEEEcC-CCC--C---HHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHH
Confidence 8888775 322211 11122 233332 111 1 36799999999997532 14689999998899999
Q ss_pred HHHHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQTFN 426 (430)
Q Consensus 414 i~~~~~~l~~~l~ 426 (430)
+++++++|++++.
T Consensus 427 id~~~~~L~~~~~ 439 (474)
T 1wyu_B 427 LEAFAEAMGALLK 439 (474)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=195.51 Aligned_cols=288 Identities=11% Similarity=0.021 Sum_probs=193.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++++. +++++++||++|+..+++.+.. ++++|++.++.||+..........
T Consensus 61 r~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~a~~~~l~~~~~--------~gd~vl~~~~~~~~~~~~~~~~~~---- 126 (398)
T 1gc0_A 61 RISNPTLNLLEARMASLEGG--EAGLALASGMGAITSTLWTLLR--------PGDEVLLGNTLYGCTFAFLHHGIG---- 126 (398)
T ss_dssp --CCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCSHHHHHHHHTGG----
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhc--------CCCEEEEeCCCchhHHHHHHHHHH----
Confidence 45778899999999999953 4778888899999999998753 567899999999886433211110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.......+++.. |+++++++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 127 -----~~g~~~~~~~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----l~~i~~l~ 176 (398)
T 1gc0_A 127 -----EFGVKLRHVDMA-----------------DLQALEAAMT---PATRVIYFES-PANPNMHMAD----IAGVAKIA 176 (398)
T ss_dssp -----GGTCEEEEECTT-----------------CHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred -----HcCCEEEEECCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCccccc----HHHHHHHH
Confidence 111223344332 7889998885 5789999999 9999998876 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCcccc-EEEEEcHHHHH-hhhccCCccccccc-CCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHS-HSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~i-g~~~~~~~~~~-~~~~~~~~~~~~~~-~t~~ 309 (430)
+++|+++|+||+|+.+ ..+... ..+....+.+++|.++++..|+ |+++++++.++ .+.. .... .+..
T Consensus 177 ~~~~~~li~D~~~~~~-~~~~~~---~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~------~~~~~~~~~ 246 (398)
T 1gc0_A 177 RKHGATVVVDNTYCTP-YLQRPL---ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQ------GLKDMTGAV 246 (398)
T ss_dssp GGGTCEEEEECTTTHH-HHCCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHT------HHHHHTCCC
T ss_pred HHcCCEEEEECCCccc-ccCCch---hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHH------HhhccCCCC
Confidence 9999999999999733 222211 2233334447889999744687 88999887655 3443 1222 3345
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCe------e----eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKI------I----NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~------~----~~~~~g~~~~~~~~~~~~~ 374 (430)
.+++.++++.++++.+ +...++..++.+.+.+.|++... ++.+ . ..++.|.++.+++. .+
T Consensus 247 ~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~-- 321 (398)
T 1gc0_A 247 LSPHDAALLMRGIKTL--NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK-GG-- 321 (398)
T ss_dssp CCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET-TH--
T ss_pred CCHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC-CC--
Confidence 6788777777777643 23445566667777777765311 1111 0 01356888888876 31
Q ss_pred cchhHHHHHHHHHHHCCcEEee---c----------------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRP---I----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~---~----------------------------~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.....+.+.+.|+.... + .+.+|++++...++++|+.+.++|++
T Consensus 322 -----~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 322 -----IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp -----HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 12344555566665432 1 27899999999999999999888876
Q ss_pred H
Q psy14484 424 T 424 (430)
Q Consensus 424 ~ 424 (430)
+
T Consensus 397 ~ 397 (398)
T 1gc0_A 397 S 397 (398)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-23 Score=198.61 Aligned_cols=307 Identities=14% Similarity=0.182 Sum_probs=198.6
Q ss_pred HHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEEEEc
Q psy14484 55 INKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFICLQ 133 (430)
Q Consensus 55 v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl~~~ 133 (430)
+.+++.+.+.... .+..+...++++.++++++ .+++++++||++|++.+++.+ .. ++++|++..
T Consensus 21 ~~~~~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~a~~~~~~~~~~~--------~gd~v~~~~ 85 (374)
T 3uwc_A 21 YLNDLREFIKTAD-----FTLGAELEKFEKRFAALHN--APHAIGVGTGTDALAMSFKMLNIG--------AGDEVITCA 85 (374)
T ss_dssp HHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHTT--CSEEEEESCHHHHHHHHHHHTTCC--------TTCEEEEES
T ss_pred HHHHHHHHHHcCC-----cccChhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCCC--------CCCEEEECC
Confidence 6666666655432 3456788899999999995 458999999999999999877 33 568899999
Q ss_pred CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccccc
Q psy14484 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQC 213 (430)
Q Consensus 134 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~ 213 (430)
++|++........+ .+...++.+..... |+++++++++ +++++|+ | . +
T Consensus 86 ~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~------------d~~~l~~~~~---~~~~~v~--~-~-n 133 (374)
T 3uwc_A 86 NTFIASVGAIVQAG-------------ATPVLVDSENGYVI------------DPEKIEAAIT---DKTKAIM--P-V-H 133 (374)
T ss_dssp SSCHHHHHHHHHTT-------------CEEEEECBCTTSSB------------CGGGTGGGCC---TTEEEEC--C-B-C
T ss_pred CccHHHHHHHHHcC-------------CEEEEEecCCCCCc------------CHHHHHHhCC---CCceEEE--E-e-C
Confidence 99988654332211 22334444322222 6788887775 4677776 4 4 4
Q ss_pred CCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCC-CccccEEEEEcH-
Q psy14484 214 AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMTTD- 287 (430)
Q Consensus 214 ~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~g-G~~~ig~~~~~~- 287 (430)
++|...+ +++|.++|++||+++|+||+|+.+.. +.....+..+|++++| |.+++ | ..|+++.++
T Consensus 134 ~~G~~~~----~~~i~~~~~~~~~~li~D~~~~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g--~~g~~~~~~~ 203 (374)
T 3uwc_A 134 YTGNIAD----MPALAKIAKKHNLHIVEDACQTILGR----INDKFVGSWGQFACFSLHPLKNLNVWS--DAGVIITHSD 203 (374)
T ss_dssp GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCE----ETTEETTSSSSEEEEECSSSSSSCCSS--CCEEEEESCH
T ss_pred CcCCcCC----HHHHHHHHHHcCCEEEEeCCCccCce----eCCeeccccccEEEEeCCCCCcCCccc--eeEEEEeCCH
Confidence 5676666 99999999999999999999983211 2223344457988877 99987 6 277777764
Q ss_pred HHHHhhhcc---CCccccc---ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-CCCeeeEe-e
Q psy14484 288 KIYNSIYYK---NNINIFL---HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFR-Q 359 (430)
Q Consensus 288 ~~~~~~~~~---~~~~~~~---~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~~~~-~ 359 (430)
++.+.+..- +....+. .+.++..+++.++.+...++.+ +++.++.+++.+++.+.|+++.. ........ .
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 281 (374)
T 3uwc_A 204 EYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGV 281 (374)
T ss_dssp HHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTE
T ss_pred HHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCC
Confidence 555444320 0000011 1223333555444444333322 34667778888888888877632 11111111 1
Q ss_pred cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC----------------------------CEEEEeCCCCCCH
Q psy14484 360 KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------NTVYLMPPYILNK 411 (430)
Q Consensus 360 ~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~----------------------------~~lR~~~~~~~t~ 411 (430)
...++.+.+. .. . ...+.+.|.++||.+.+.. +.+|++++..+|+
T Consensus 282 ~~~~~~~~~~-~~----~--~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~ 354 (374)
T 3uwc_A 282 YHVFHIYVLR-VK----Y--RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTE 354 (374)
T ss_dssp ECCCSSEEEE-ET----T--HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCH
T ss_pred ceeeEEEEEE-cC----C--HHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCH
Confidence 1222222222 11 1 3679999999999887653 6899999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQTFNE 427 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~ 427 (430)
+||++++++|++++++
T Consensus 355 edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 355 EEINYIIKKVREFYLE 370 (374)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998865
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=200.70 Aligned_cols=331 Identities=11% Similarity=0.055 Sum_probs=208.7
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHh-hccccc--cC-CCCCHHHHH----HHHHHHhhcCCCCCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLN-KLEHVM--LS-NLTHKPVIK----LSEKLSSLTQYKLGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~--~~-~~~~~~~~~----l~~~l~~~~~~~~~~v~~~~sgte 105 (430)
+.++|+.++ +++ +|++++++.+++. .....+ .. ....+...+ +++++++.++.+ ...+++++|++
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~-~~~i~~~sGt~ 96 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE-HANVQPHSGAQ 96 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEECCCSSHHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCC-ceEEEecCcHH
Confidence 457787554 333 8999999999875 322111 10 111222333 456899998644 23444567799
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhh--ccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL--AVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANE 182 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 182 (430)
|++.+++++.. +++.|++.+++|+.+..... ...+ .. .....++.. ..+..
T Consensus 97 a~~~a~~~~~~--------~gd~Vl~~~~~~~~~~~~~~~~~~~g-----~~-----~~~~~~~~~~~~~~~-------- 150 (405)
T 2vi8_A 97 ANMAVYFTVLE--------HGDTVLGMNLSHGGHLTHGSPVNFSG-----VQ-----YNFVAYGVDPETHVI-------- 150 (405)
T ss_dssp HHHHHHHHHCC--------TTCEEEEECGGGTCCTTTTCTTSHHH-----HH-----SEEEEECBCTTTCSB--------
T ss_pred HHHHHHHHhcC--------CCCEEEEecccccchhcccchhhhcc-----ce-----eEEEecccccccCCc--------
Confidence 99999998843 56788888887765422111 1111 00 011222221 22222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
|+++|++++++. ++++|+++| .+ .|...+ +++|.++|++||+++|+||+|+ ++..+... ....+
T Consensus 151 ----d~~~l~~~i~~~--~~~~v~~~~-~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~~~--~~~~~ 214 (405)
T 2vi8_A 151 ----DYDDVREKARLH--RPKLIVAAA-AA--YPRIID----FAKFREIADEVGAYLMVDMAHI-AGLVAAGL--HPNPV 214 (405)
T ss_dssp ----CHHHHHHHHHHH--CCSEEEECC-SS--CCSCCC----HHHHHHHHHHHTCEEEEECTTT-HHHHHTTS--SCCST
T ss_pred ----CHHHHHHHHHhc--CCeEEEEeC-CC--CCccCC----HHHHHHHHHHcCCEEEEEcccc-ccccccCc--CCCcc
Confidence 889999999742 456777765 32 232333 8999999999999999999998 44332211 11111
Q ss_pred -CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhh---cCHHHHHH
Q psy14484 263 -WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRIS 335 (430)
Q Consensus 263 -~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~~~~---~~~~~~~~ 335 (430)
.+|++ +++|+++|+ .. |++++++++++.+.. .....++++ ++..++++.++++.+.. ++..++++
T Consensus 215 ~~~di~~~s~sK~~~g~-~g-G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~ 286 (405)
T 2vi8_A 215 PYAHFVTTTTHKTLRGP-RG-GMILCQEQFAKQIDK------AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVV 286 (405)
T ss_dssp TTCSEEEEESSSTTCCC-SC-EEEEECHHHHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCEEEEeccccCCCC-CC-eEEEEcHHHHHHHHh------hhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 46776 788999864 23 999999888877654 111223333 56666666677776543 45677788
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEe
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLM 404 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~ 404 (430)
++.+++.+.|+++ ..+... ..+.+.++++.+. .... . ...+.+.|.++||.+.++ ++++|++
T Consensus 287 ~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~-~~~~--~--~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis 359 (405)
T 2vi8_A 287 DNAKRLASALQNE-GFTLVS-GGTDNHLLLVDLR-PQQL--T--GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIG 359 (405)
T ss_dssp HHHHHHHHHHHHT-TCEEGG-GSCSSSEEEEECG-GGTC--C--HHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEE
T ss_pred HHHHHHHHHHHhC-CCeEec-CCCCceEEEEEcc-CCCC--C--HHHHHHHHHHcCceeccCcCccccCCCCCCCceEEe
Confidence 8888888888775 322211 1235677777765 3111 1 356888898999998873 3589999
Q ss_pred CCC----CCCHHHHHHHHHHHHHHHHHh
Q psy14484 405 PPY----ILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 405 ~~~----~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++. .++++++++++++|++++.++
T Consensus 360 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 360 TAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred eeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 886 578999999999999988654
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=198.41 Aligned_cols=332 Identities=13% Similarity=0.080 Sum_probs=203.0
Q ss_pred EEEecccccccccCCC-CCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
+++|..++ +.+||. .+|.+.+++++++..... ....+...+...++++++++.++ .+..++++||++|+..++
T Consensus 4 ~~~~~~~~--~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~--~~~~i~~~~G~~a~~~al 79 (357)
T 3lws_A 4 RLRTSFQQ--TTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG--MDDAVFFPSGTMAQQVAL 79 (357)
T ss_dssp HHHHHHHT--CSEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHH
T ss_pred hhhhHHHh--hcccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC--CCcEEEecCcHHHHHHHH
Confidence 45552333 456666 478888888887775321 11112234667889999999985 356677799999999999
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
++++.. ++..+|+.++.+|.+....... ... .+...+++|...... |+++|
T Consensus 80 ~~~~~~-------gd~~~vi~~~~~~~~~~~~~~~---------~~~--~g~~~~~v~~~~~~~-----------d~~~l 130 (357)
T 3lws_A 80 RIWSDE-------TDNRTVAYHPLCHLEIHEQDGL---------KEL--HPIETILVGAADRLM-----------TLDEI 130 (357)
T ss_dssp HHHHHH-------HTCCEEEECTTCHHHHSSTTHH---------HHH--SSCEEEECSCTTSCC-----------CHHHH
T ss_pred HHHhhc-------CCCcEEEecccceeeeeccchh---------hhc--cCcEEEEecCCCCCc-----------CHHHH
Confidence 988763 3332555666666432210000 000 011222333211111 77887
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-----CCCCcccccccccCCCCCce
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-----GCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-----g~g~~g~~~~~~~~~~~~d~ 266 (430)
+++ .+ ++++++++ ++|++|...++.+.+++|.++|++||+++|+||+|. .+++....+. ...|+
T Consensus 131 ~~~----~~-~~~v~~~~-p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-----~~~d~ 199 (357)
T 3lws_A 131 KAL----PD-IACLLLEL-PQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-----GLFDS 199 (357)
T ss_dssp HTC----CS-CSEEEEES-SBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-----TTSSE
T ss_pred hcC----cC-cceEEEEc-ccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-----hcCCE
Confidence 765 22 67788888 777764477889999999999999999999999875 1122111111 12344
Q ss_pred --eeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q psy14484 267 --LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 344 (430)
Q Consensus 267 --~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~ 344 (430)
.++||++++. ..|++++++++++.+.. .+....+..+..++. ++++.++|+.. .+...+..++.+++.+.
T Consensus 200 ~~~s~sK~~~~~--~gg~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~~~~~~~l~~~ 271 (357)
T 3lws_A 200 IYISFYKGLGGI--AGAILAGPAAFCQTARI---WKRRYGGDLISLYPY-IVSADYYYELR--KDRMGQYYEQAKQLAEQ 271 (357)
T ss_dssp EEEESSSTTCCS--SCEEEEECHHHHHHHHH---HHHHTTCCCSCCHHH-HHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCC--ceEEEEcCHHHHHHHHH---HHHHhcCCcccchHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4899999653 23888999998877653 011111222333333 34444556542 22234456677788888
Q ss_pred HHchhcCCCeee--EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----CC--EEEEeCCC---CCCHHH
Q psy14484 345 LTSLITHPKIIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----GN--TVYLMPPY---ILNKNE 413 (430)
Q Consensus 345 l~~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----~~--~lR~~~~~---~~t~e~ 413 (430)
|+++ +.+.. .+..+.++++.+. ... ......+.+.|.++||.+.++ ++ .+|+++.. ..++++
T Consensus 272 L~~~---~g~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~ 344 (357)
T 3lws_A 272 FNAL---PGVHTTPEVPVSNMFHLHFD-GQA---ADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQT 344 (357)
T ss_dssp HHTS---TTEEEESSSCSSSEEEEEEE-SCH---HHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHH
T ss_pred HHhC---CCCeeccCCCcceEEEEEec-CCh---HHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHH
Confidence 8765 43332 2456777777776 421 111357888999999998875 23 78887663 358999
Q ss_pred HHHHHHHHHHHH
Q psy14484 414 IQHMTSAIFQTF 425 (430)
Q Consensus 414 i~~~~~~l~~~l 425 (430)
+++++++|.+++
T Consensus 345 l~~al~~l~~al 356 (357)
T 3lws_A 345 RDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=198.63 Aligned_cols=331 Identities=10% Similarity=0.066 Sum_probs=210.1
Q ss_pred CHHHHHHHHHHHhhcc-----ccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC
Q psy14484 52 NSYINKALKNQLNKLE-----HVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 123 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~ 123 (430)
+..+.+++.+.+.... .+....+..++++++++.+.+..+ +++++|++|+|+++|+..+++++... |.
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~----gd 178 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSG----GG 178 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCC----CG
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCC----CC
Confidence 4455566666666532 112223344677888888877653 46789999999999999999977541 11
Q ss_pred CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC--CCCCCCCChhHHHHHHHHHHHHHHHhCCC-
Q psy14484 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCAIFDLEILLKKNHN- 200 (430)
Q Consensus 124 ~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~le~~l~~~~~- 200 (430)
++++.|++..|+|+.+.......+. ....++.... +.. |+++|++++++...
T Consensus 179 ~~~d~Vlv~~p~y~~~~~~~~~~g~-------------~~v~~~~~~~~~~~~------------d~~~le~~l~~~~~~ 233 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSAVISELDA-------------IQVNYYLDEENCWAL------------NVNELRRAVQEAKDH 233 (498)
T ss_dssp GGSEEEEEEESCCTHHHHHHHHTTC-------------EEEEEECBGGGTTBC------------CHHHHHHHHHHHTTT
T ss_pred CCCCEEEEeCCCchhHHHHHHHcCC-------------EEEEeeccccccCCC------------CHHHHHHHHHhhhcc
Confidence 1135899999999877544333221 1222322211 111 88999999986421
Q ss_pred -CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc--cccccc----CC----CCCc---e
Q psy14484 201 -KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK--FFACEH----AE----IWPD---F 266 (430)
Q Consensus 201 -~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~--~~~~~~----~~----~~~d---~ 266 (430)
+++++++.. ++|++| ...+.+.+++|.++|++||+++|+||+|..+.+.+. ...+.. .+ -... +
T Consensus 234 ~~~k~i~l~n-p~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 311 (498)
T 3ihj_A 234 CDPKVLCIIN-PGNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASF 311 (498)
T ss_dssp SEEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEE
T ss_pred CCCeEEEEEC-CCCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEE
Confidence 477777777 888888 566778899999999999999999999997654332 111111 00 0111 3
Q ss_pred eeeecccC--CCccccEEEE---EcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH-----------HHh-hcC
Q psy14484 267 LCLSKGIT--GGYLPLSLVM---TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE-----------IFN-KDN 329 (430)
Q Consensus 267 ~~~sK~l~--gG~~~ig~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~-----------~~~-~~~ 329 (430)
.+|||.+. .| +|+|+++ .++++++.+.. ......+.+.+++.++.++++ .++ ...
T Consensus 312 ~S~SK~~~G~~G-~R~G~~~~~~~~~~l~~~l~~-------~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~ 383 (498)
T 3ihj_A 312 HSTSKGYMGECG-YRGGYMEVINLHPEIKGQLVK-------LLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKES 383 (498)
T ss_dssp EESSSSTTCCSS-SCCEEEEEESCCHHHHHHHHH-------HHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHH
T ss_pred eccccccccCcc-cceEEEEEecCCHHHHHHHHH-------HHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHH
Confidence 37899994 46 7999998 58888887765 122344566777766555542 111 133
Q ss_pred HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCcc--------chhHHHH--HHHHHHHCCcEEeec-
Q psy14484 330 ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQ--------IETFSKK--FFVAALKNELLLRPI- 397 (430)
Q Consensus 330 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~--------~~~~a~~--~~~~l~~~Gv~~~~~- 397 (430)
..++++++.+++.+.|+++ +++....++|.++.| .+. ..... .. .+. +.+.|.+.||.+.|+
T Consensus 384 ~~~~l~~~~~~l~~~L~~~---~g~~~~~p~gg~~~~~~l~-~p~~~~~~~~~~g~~--~~~~~~~~ll~~~gI~v~pG~ 457 (498)
T 3ihj_A 384 VLGNLAKKAKLTEDLFNQV---PGIHCNPLQGAMYAFPRIF-IPAKAVEAAQAHQMA--PDMFYCMKLLEETGICVVPGS 457 (498)
T ss_dssp HHHHHHHHHHHHHHHHHTS---TTEECCCCCBSSEECCEEC-CCHHHHHHHHHTTSC--HHHHHHHHHHHHHCBCCEEGG
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcEecCCCeEEEEEEecc-CchhhhHHHHhcCCC--cHHHHHHHHHHHCCEEEEeCc
Confidence 4566677777777777654 555555566666554 342 11000 00 122 344556789999874
Q ss_pred -------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 398 -------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 398 -------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
...+|+++ ..+++++++++++|++++.+..
T Consensus 458 ~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 458 GFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHINFL 494 (498)
T ss_dssp GTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHHHHH
Confidence 14789976 4899999999999999987653
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-22 Score=191.75 Aligned_cols=313 Identities=14% Similarity=0.139 Sum_probs=201.2
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHH-hhhhcCCCCCcEE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH-YWYNKGFLNKKKF 129 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~-~~~~~g~~~~~~v 129 (430)
-+|++++++.+++.... ..+.+...++++.+++.++. +++++++||++|++.+++++.. . .++++|
T Consensus 11 ~~~~v~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~~~~~~------~~gd~V 77 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ-----LTQGKRSLLFEEALCEFLGV--KHALVFNSATSALLTLYRNFSEFS------ADRNEI 77 (375)
T ss_dssp CCHHHHHHHHHHHTSSC-----CSSSHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHSSCCC------TTSCEE
T ss_pred CCHHHHHHHHHHHHcCc-----ccCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHhcccC------CCCCEE
Confidence 58999999999886532 22356778999999999953 4999999999999999998731 1 156789
Q ss_pred EEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Q psy14484 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209 (430)
Q Consensus 130 l~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 209 (430)
++.+++|++........+ .....++.+.... .|+++|++.++ +++++|++..
T Consensus 78 l~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~------------~d~~~l~~~i~---~~~~~v~~~~ 129 (375)
T 2fnu_A 78 ITTPISFVATANMLLESG-------------YTPVFAGIKNDGN------------IDELALEKLIN---ERTKAIVSVD 129 (375)
T ss_dssp EECSSSCTHHHHHHHHTT-------------CEEEECCBCTTSS------------BCGGGSGGGCC---TTEEEEEEEC
T ss_pred EECCCccHhHHHHHHHCC-------------CEEEEeccCCCCC------------CCHHHHHhhcC---cCceEEEEeC
Confidence 999999988754333211 1223333322111 16788887774 4677776655
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc--eeeee--cccCCCccccEEEEE
Q psy14484 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD--FLCLS--KGITGGYLPLSLVMT 285 (430)
Q Consensus 210 ~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d--~~~~s--K~l~gG~~~ig~~~~ 285 (430)
+ +|...+ +++|.++|++||+++|+||+|+ ++..... ...+..+| +.++| |.++.| +|++++
T Consensus 130 -~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~-~~~~~~~---~~~~~~~~i~~~s~s~~K~~~~g---~g~~~~ 194 (375)
T 2fnu_A 130 -Y---AGKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSEYQN---KKVGGFALASVFSFHAIKPITTA---EGGAVV 194 (375)
T ss_dssp -G---GGCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCEETT---EETTSSSSEEEEECCTTSSSCCS---SCEEEE
T ss_pred -C---cCCccC----HHHHHHHHHHcCCEEEEECccc-cCCeECC---eeccccCCeEEEeCCCCCCcccc---CceEEE
Confidence 4 676766 8999999999999999999997 3322111 11222234 45788 988653 677777
Q ss_pred c--HHHHHhhhccCCcc-------cc---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCC
Q psy14484 286 T--DKIYNSIYYKNNIN-------IF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPK 353 (430)
Q Consensus 286 ~--~~~~~~~~~~~~~~-------~~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 353 (430)
+ +++.+.+....... .+ ..+.++..+++.++++...++.+ ++..++.+++.+++.+.|+++ +.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~---~~ 269 (375)
T 2fnu_A 195 TNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN---PY 269 (375)
T ss_dssp ESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC---SS
T ss_pred eCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---CC
Confidence 3 66766554310000 00 01122344566555444443322 345677778888888888765 32
Q ss_pred eeeEe------ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c----------------------CCEE
Q psy14484 354 IINFR------QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----------------------GNTV 401 (430)
Q Consensus 354 ~~~~~------~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~----------------------~~~l 401 (430)
+.... ..+.++.+.+. ..... . +..+.+.|.++||.+.. . .+.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~--~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l 345 (375)
T 2fnu_A 270 FTPLHPLLKDKSSNHLYPILMH-QKFFT-C--KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEI 345 (375)
T ss_dssp EEESGGGCSSCCCCSCEEEEEC-GGGGG-G--HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEE
T ss_pred ccccCCCCCCCcceEEEEEEeC-ccccc-h--HHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEE
Confidence 22111 12334455555 31100 1 46789999999998872 1 1579
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++++..++++++++++++|+++++++
T Consensus 346 Ri~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 346 SLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.8e-22 Score=191.41 Aligned_cols=311 Identities=14% Similarity=0.084 Sum_probs=205.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl 130 (430)
+|++++++.+++.... ....+...++++.+++.++ .+++++++||++|++.+++++ .. +++.|+
T Consensus 19 ~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~~~~~~~gt~al~~~~~~~~~~--------~gd~Vl 83 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW-----ITTGPKNQELEAAFCRLTG--NQYAVAVSSATAGMHIALMALGIG--------EGDEVI 83 (393)
T ss_dssp CHHHHHHHHHHHHHTC-----CSSSHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTCC--------TTCEEE
T ss_pred CHHHHHHHHHHHhcCC-----cCCChHHHHHHHHHHHHhC--CCcEEEecChHHHHHHHHHHcCCC--------CCCEEE
Confidence 5889999998887632 2345777899999999994 458999999999999999987 32 567899
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 209 (430)
+.+++|++....... .+ .+...++.+.. +.. |+++|+++++ +++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~-~g------------~~~~~v~~~~~~~~~------------d~~~l~~~l~---~~~~~v~~~~ 135 (393)
T 1mdo_A 84 TPSMTWVSTLNMIVL-LG------------ANPVMVDVDRDTLMV------------TPEHIEAAIT---PQTKAIIPVH 135 (393)
T ss_dssp EESSSCHHHHHHHHH-TT------------CEEEEECBCTTTCCB------------CHHHHHHHCC---TTEEEECCBC
T ss_pred eCCCccHhHHHHHHH-CC------------CEEEEEeccCCcCCC------------CHHHHHHhcC---CCceEEEEeC
Confidence 999999876433222 11 22334443321 112 7899998885 4678887655
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee----cccCCCccccEEEE
Q psy14484 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVM 284 (430)
Q Consensus 210 ~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~ 284 (430)
++|...+ +++|.++|+++|+++|+||+|+ |+...+.. ++. +|++++| |.+++| ++|+++
T Consensus 136 ----~~G~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~ 199 (393)
T 1mdo_A 136 ----YAGAPAD----LDAIYALGERYGIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVV 199 (393)
T ss_dssp ----GGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEE
T ss_pred ----CCCCcCC----HHHHHHHHHHcCCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEE
Confidence 3565555 9999999999999999999998 33233321 222 7888766 888775 689999
Q ss_pred Ec-HHHHHhhhccCCcc-------------ccc-----ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q psy14484 285 TT-DKIYNSIYYKNNIN-------------IFL-----HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 345 (430)
Q Consensus 285 ~~-~~~~~~~~~~~~~~-------------~~~-----~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l 345 (430)
.+ +++.+.+....... +.. .+..+..+++.++++...++.+ ++..++.+++.+++.+.|
T Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L 277 (393)
T 1mdo_A 200 TDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAM 277 (393)
T ss_dssp ESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 86 77776654310000 000 0111234666666665555533 345666777888888888
Q ss_pred HchhcCCCe--e--eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec------------------------
Q psy14484 346 TSLITHPKI--I--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI------------------------ 397 (430)
Q Consensus 346 ~~l~~~~~~--~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------------------------ 397 (430)
+++. .... . ..+..+.++++.+. ....... ..++.+.|.++||.+.++
T Consensus 278 ~~~~-~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~--~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (393)
T 1mdo_A 278 ADLP-FQPLSLPSWEHIHAWHLFIIRVD-EARCGIT--RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEW 353 (393)
T ss_dssp HTSS-CEECCCCSSCEECCCSCEEEECC-HHHHSSC--HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHH
T ss_pred hcCC-cccccCCCCCCCceeEEEEEEec-ccccccC--HHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHH
Confidence 7652 1111 1 12233456666665 3000001 367999999999988763
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
...+|++++..+|++|+++++++|++++..
T Consensus 354 ~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 354 NSERICSLPLFPDMTESDFDRVITALHQIAGQ 385 (393)
T ss_dssp HHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred HHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence 127999999889999999999999988753
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=197.73 Aligned_cols=286 Identities=14% Similarity=0.079 Sum_probs=192.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
...+..+++++.++++++. +++++++||++|+..+++.+.. +++.|++.++.|+++......
T Consensus 59 ~~~~~~~~l~~~ia~~~g~--~~~i~~~~g~~ai~~~~~~l~~--------~gd~Vl~~~~~y~~~~~~~~~-------- 120 (404)
T 1e5e_A 59 LGNPTVSNLEGKIAFLEKT--EACVATSSGMGAIAATVLTILK--------AGDHLISDECLYGCTHALFEH-------- 120 (404)
T ss_dssp TCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESCCCHHHHHHHHT--------
T ss_pred CcChHHHHHHHHHHHHhCC--CcEEEeCChHHHHHHHHHHHhC--------CCCEEEEeCCCchhHHHHHHH--------
Confidence 4467788999999999953 5888899999999999987753 567899999999875331000
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
.......+...++.. |+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|+
T Consensus 121 -~~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~t~~v~l~~-p~NptG~v~~----l~~i~~la~ 174 (404)
T 1e5e_A 121 -ALTKFGIQVDFINTA-----------------IPGEVKKHMK---PNTKIVYFET-PANPTLKIID----MERVCKDAH 174 (404)
T ss_dssp -HHHHTTCEEEEECTT-----------------STTHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHH
T ss_pred -HHHHcCCEEEEECCC-----------------CHHHHHHhcC---CCCcEEEEEC-CCCCCCcccC----HHHHHHHHH
Confidence 011112233444432 5678888885 5789999999 9999998776 999999999
Q ss_pred h-cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEcHHHHH-hhhccCCcccccccC-C
Q psy14484 234 N-YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTTDKIYN-SIYYKNNINIFLHSH-S 307 (430)
Q Consensus 234 ~-~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~~~~~~-~~~~~~~~~~~~~~~-t 307 (430)
+ +|+++|+||+|+.+... ... + ++ .|++ ++||.+++...++ |++++++++++ .+.. ..... +
T Consensus 175 ~~~~~~li~De~~~~~~~~-~~~--~-~~--~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~------~~~~~~g 242 (404)
T 1e5e_A 175 SQEGVLVIADNTFCSPMIT-NPV--D-FG--VDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV------GIKDITG 242 (404)
T ss_dssp TSTTCEEEEECTTTCTTTC-CGG--G-GT--CSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT------CCCCCCC
T ss_pred hhcCCEEEEECCCchhhhC-Ccc--c-cC--CEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHH------HHHhCCC
Confidence 9 99999999999866432 121 1 23 4555 6889998744787 99999998877 6664 11222 3
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----------cCCCeee----EeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----------THPKIIN----FRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----------~~~~~~~----~~~~g~~~~~~~~~~~ 372 (430)
...+++.+.++.++++.+ +...++..++.+.+.+.+++.. ..|.+.. .++.|.++.|++. +.
T Consensus 243 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~-~~ 319 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTL--NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK-SG 319 (404)
T ss_dssp CCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET-TH
T ss_pred CCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC-CC
Confidence 456788777777777533 1233344555555555554321 1122111 2345889988776 31
Q ss_pred CccchhHHHHHHHHHHHCCcEEeec-------------------------------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAALKNELLLRPI-------------------------------GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~Gv~~~~~-------------------------------~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.....+.+.+.||++... .+.+|++++. |++++++++|
T Consensus 320 -------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l 388 (404)
T 1e5e_A 320 -------FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADF 388 (404)
T ss_dssp -------HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHH
Confidence 123445566668743320 3689999886 8899999999
Q ss_pred HHHHHHhh
Q psy14484 422 FQTFNEVI 429 (430)
Q Consensus 422 ~~~l~~~~ 429 (430)
++++..++
T Consensus 389 ~~al~~~~ 396 (404)
T 1e5e_A 389 KQGLDALL 396 (404)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=195.67 Aligned_cols=310 Identities=15% Similarity=0.138 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFIC 131 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl~ 131 (430)
|++.+++.+.+....+ ....+...++++.+++.++ .+++++++||++|++.+++++ .. +++.|++
T Consensus 36 ~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~--~~~~i~~~~gt~al~~~l~~~~~~--------~gd~vl~ 101 (391)
T 3dr4_A 36 GNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCG--VKHAIACNNGTTALHLALVAMGIG--------PGDEVIV 101 (391)
T ss_dssp SSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHHHTCC--------TTCEEEE
T ss_pred HHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCCC--------CcCEEEE
Confidence 5677887777655221 1256788899999999995 458999999999999999987 32 5678999
Q ss_pred EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 132 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
.+++|++........+ .....++.+ +.+.. |+++|+++++ +++++|++
T Consensus 102 ~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------d~~~l~~~~~---~~~~~v~~--- 150 (391)
T 3dr4_A 102 PSLTYIASANSVTYCG-------------ATPVLVDNDPRTFNL------------DAAKLEALIT---PRTKAIMP--- 150 (391)
T ss_dssp ESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCSB------------CGGGSGGGCC---TTEEEECC---
T ss_pred CCCchHHHHHHHHHCC-------------CEEEEEecCccccCc------------CHHHHHHhcC---CCceEEEE---
Confidence 9999998754433322 222344433 22222 6778887774 46777763
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEc
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT 286 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~ 286 (430)
. +++|...+ +++|.++|+++|+++|+||+|+ +|... .-...+..+|+.++| |++++| +.|+++.+
T Consensus 151 ~-n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~ 219 (391)
T 3dr4_A 151 V-HLYGQICD----MDPILEVARRHNLLVIEDAAEA-VGATY---RGKKSGSLGDCATFSFFGNAIITTG--EGGMITTN 219 (391)
T ss_dssp B-CGGGCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECBTTSSSCCB--SCEEEEES
T ss_pred E-CCCCChhh----HHHHHHHHHHcCCEEEEECccc-ccceE---CCeeecccCCEEEEECCCCCcCCcC--CeEEEEEC
Confidence 2 35676666 9999999999999999999997 22211 111223335777777 999775 57888776
Q ss_pred H-HHHHhhhc---cCCc--cc---ccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee-
Q psy14484 287 D-KIYNSIYY---KNNI--NI---FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN- 356 (430)
Q Consensus 287 ~-~~~~~~~~---~~~~--~~---~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~- 356 (430)
+ .+.+.+.. .+.. .. ...+..+..+++.++++...++.+ ++..++.+++.+++++.|+++ .......
T Consensus 220 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 296 (391)
T 3dr4_A 220 DDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL-GNRVTKPH 296 (391)
T ss_dssp CHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG-TTSEECCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CccccCcC
Confidence 4 45544432 0000 00 001122444555555544444432 346778888888999999876 3322211
Q ss_pred ----EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-------------------------CEEEEeCCC
Q psy14484 357 ----FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------------NTVYLMPPY 407 (430)
Q Consensus 357 ----~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-------------------------~~lR~~~~~ 407 (430)
....+.++.+.+. .... .. ..++.+.|.++||.+.++. ..+|+.++.
T Consensus 297 ~~~~~~~~~~~~~i~~~-~~~~-~~--~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~ 372 (391)
T 3dr4_A 297 VALTGRHVFWMYTVRLG-EGLS-TT--RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHA 372 (391)
T ss_dssp CCTTSCCCCSSEEEEEC-SSCS-SC--HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCT
T ss_pred CCCCCcceeEEEEEEEC-Cccc-hh--HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCC
Confidence 1122334455555 3111 11 3679999999999887642 478999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l 425 (430)
.+|++||++++++|++++
T Consensus 373 ~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 373 GLTEADIDRVIAALDQVL 390 (391)
T ss_dssp TCCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999998653
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=194.75 Aligned_cols=341 Identities=12% Similarity=0.029 Sum_probs=207.5
Q ss_pred CEEEecccccccccCCC--CCHHHHHHHHHHH-hhc-c-ccccCCCCCHHHHHHHHHHHhhcC--CCCC--eEEEcCCch
Q psy14484 34 KRYLDAISSWWVNLFGH--SNSYINKALKNQL-NKL-E-HVMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGSDGA 104 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~--~~~~--~v~~~~sgt 104 (430)
..+|||..|.....-|. ..+.|++|.. .+ +.. . .+....+..++++.+++++.+... ...+ ++++|+||+
T Consensus 29 ~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~ 107 (405)
T 3k7y_A 29 EEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGT 107 (405)
T ss_dssp SSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHH
T ss_pred cCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchH
Confidence 35688876642222232 3577778766 43 222 1 122234445666777777755432 1234 369999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CC-CCCCCCCCChhH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PD-SRNINKGNSANE 182 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 182 (430)
+|+..+++++.... + +.|++.+|+|.++.......+. ..+.++. +. .+..
T Consensus 108 ~al~~~~~~l~~~~------~-d~Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-------- 159 (405)
T 3k7y_A 108 GAIFVLLEFLKMLN------V-ETLYVTNPPYINHVNMIESRGF-------------NLKYINFFDYNLIDI-------- 159 (405)
T ss_dssp HHHHHHHHHHHTTT------C-CEEEEESSCCHHHHHHHHTTTC-------------EEEEECCEETTTTEE--------
T ss_pred HHHHHHHHHHHhcC------C-CEEEEeCCCCHhHHHHHHHcCC-------------eEEEEeccccccCCc--------
Confidence 99999998877532 5 8999999999987544433222 2233333 11 1222
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---ccccc-
Q psy14484 183 IARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFACE- 258 (430)
Q Consensus 183 ~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~~- 258 (430)
|+++|++.+++.+ +.+++++.+-.+|++| ..++.+.+++|.++|++|++++|+||+|.+|...+. .....
T Consensus 160 ----d~~~l~~~l~~~~-~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~ 233 (405)
T 3k7y_A 160 ----NYDLFLNDLRNIP-NGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRK 233 (405)
T ss_dssp ----CHHHHHHHHHHSC-SSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHH
T ss_pred ----CHHHHHHHHHhCC-CCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHH
Confidence 8899999997642 3455666540589999 678889999999999999999999999998864321 11111
Q ss_pred cCCCCCc---eeeeecccC-CCccccEEEEE---cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHH------
Q psy14484 259 HAEIWPD---FLCLSKGIT-GGYLPLSLVMT---TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF------ 325 (430)
Q Consensus 259 ~~~~~~d---~~~~sK~l~-gG~~~ig~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~------ 325 (430)
.....+. +-+|||.++ .| +|+|++++ ++++++.+.. .-.........+.+.+++.++.++|+.-
T Consensus 234 ~~~~~~~~i~~~S~SK~~~l~G-lRiG~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 310 (405)
T 3k7y_A 234 FEEKNIAFSVCQSFSKNMSLYG-ERAGALHIVCKNQEEKKIVFN--NLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNW 310 (405)
T ss_dssp HHTTTCCEEEEEECTTTSCCTT-TTEEEEEEECSSHHHHHHHHH--HHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhcCCcEEEEeeCCccCCCcc-ccceEEEEEeCCHHHHHHHHH--HHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHH
Confidence 1112223 337999988 57 89999864 5665544421 0000111122234566666666655421
Q ss_pred h--hcCHHHHHHHHHHHHHHHHH----chhcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC
Q psy14484 326 N--KDNILQRISQDMKKITKALT----SLITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG 398 (430)
Q Consensus 326 ~--~~~~~~~~~~~~~~l~~~l~----~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~ 398 (430)
. -....++++++.+.+.+.|+ ++ ..+ .+....++|.|+.+.-. + . +++++|.++||.+.|++
T Consensus 311 ~~~l~~~~~~~~~~R~~l~~~L~~~~~~~-g~~~~~~~~~p~gg~f~~~~l-~-----~----~~~~~L~~~gV~v~p~~ 379 (405)
T 3k7y_A 311 IKELSQLSQRITNNRILFFNKLETYQKKY-NLNYDWNVYKKQRGLFSFVPL-L-----A----KIAEHLKTHHIYIINNG 379 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGG-TCCCCGGGGSSCCSSEEECGG-G-----G----GGTTTTTTTTEECCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc-CCCCCCccccCCceEEEecCC-C-----H----HHHHHHHHCCEeecCCC
Confidence 0 02234456777777777777 55 222 12334456665544211 1 1 23455677899999875
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
||+++ ..++++|++++++|++++++
T Consensus 380 ---Ris~a-~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 380 ---RINVS-GITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ---EEEGG-GCCTTHHHHHHHHHHHHHHC
T ss_pred ---eEEEe-ccCHHHHHHHHHHHHHHHhh
Confidence 88654 45788999999999998864
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=195.72 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~ 131 (430)
+|++.+++.+.+.. ...+..+...++++++++.++ .+..++++||++|+..++++++.. ++..+|+
T Consensus 28 ~p~v~~ai~~~~~~-----~~~~~~~~~~~l~~~la~~~~--~~~~i~~~~g~~a~~~a~~~~~~~-------g~~~vvi 93 (359)
T 3pj0_A 28 LTEALQNIDDNLES-----DIYGNGAVIEDFETKIAKILG--KQSAVFFPSGTMAQQIALRIWADR-------KENRRVA 93 (359)
T ss_dssp HHHHTTTSCTTCBC-----CBTTBSHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHHHH-------HTCCEEE
T ss_pred CHHHHHHHHhhccc-----CcccCCHHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHHHhc-------CCCcEEE
Confidence 57777777763221 123456788899999999984 455577799999999999988763 4444666
Q ss_pred EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 132 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
.++.+|.+........ .........++.+ +... |+++|+++ . +++++|++++ +
T Consensus 94 ~~~~~~~~~~~~~~~~---------~~~g~~~~~v~~~-~~~~------------d~~~l~~~-~---~~~~~v~~~~-p 146 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLK---------ELQQITPLLLGTA-NQLL------------TIDDIKSL-R---EPVSSVLIEL-P 146 (359)
T ss_dssp ECTTCHHHHSSTTHHH---------HHHCCEEEECSCT-TSCC------------CHHHHHTC-S---SCCSEEEEES-S
T ss_pred EeccceeeehhcchHH---------HhcCceEEecCCc-CCCc------------CHHHHHhc-c---CCceEEEEEe-c
Confidence 6666654322110000 0001122233321 1111 78888876 2 4678888888 7
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcHHH
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDKI 289 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~ 289 (430)
+|++|...++.+.+++|.++|++||+++|+||+|..+................|++ ++||+++++ .. |++++++++
T Consensus 147 ~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~-~g-g~~~~~~~l 224 (359)
T 3pj0_A 147 QREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI-AG-AILAGNDDF 224 (359)
T ss_dssp BGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS-SC-EEEEECHHH
T ss_pred ccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCc-ce-EEEECCHHH
Confidence 77764477888999999999999999999999875221000000010111234555 788988765 23 778889998
Q ss_pred HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee--EeecceEEEEE
Q psy14484 290 YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN--FRQKGMIWAFD 367 (430)
Q Consensus 290 ~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~~g~~~~~~ 367 (430)
++.+.. .+....+.++..++.+ +++..+++.. .+..++..++.+++.+.|+++ +.+.. .+..+.++++.
T Consensus 225 ~~~~~~---~~~~~~~~~~~~~~~~-~a~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~ 295 (359)
T 3pj0_A 225 VQEAKI---WKRRYGGDLISLYPYI-LSADYYFEKR--IGKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVY 295 (359)
T ss_dssp HHHHHH---HHHHTTCCCSCCHHHH-HHHHHHHHHH--GGGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEE
T ss_pred HHHHHH---HHHHhCCCcchhHHHH-HHHHHHHHHH--HHHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEE
Confidence 887653 0111112333333433 3344555533 244555677788888888765 33332 23456666666
Q ss_pred EeecCCccchhHHHHHHHHHHHCCcEEeecC-------CEEEEeCCC---CCCHHHHHHHHHHHHHH
Q psy14484 368 VIIEDPEQIETFSKKFFVAALKNELLLRPIG-------NTVYLMPPY---ILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 368 ~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-------~~lR~~~~~---~~t~e~i~~~~~~l~~~ 424 (430)
+. ... ......+.+.|.++||.+.++. .++|+++.. ..+.+++++++++|.++
T Consensus 296 ~~-~~~---~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 296 FE-NSA---DEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp ES-SCH---HHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred ec-Ccc---chhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 65 321 1114678899999999998752 467886643 35899999999998875
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=189.63 Aligned_cols=312 Identities=8% Similarity=0.019 Sum_probs=203.7
Q ss_pred CCHHHHHHHHHHHhhccccccCCCC--CHHHHHHHHHHHhhcCC-CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLT--HKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~ 127 (430)
-+|++.+++.+.+..........+. .+...++++.+++.++. +.+++++++||++|+..+++.+.. +
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~--------~-- 84 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVE--------K-- 84 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCS--------S--
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccC--------C--
Confidence 4789998888877653211111111 24567888899998865 356899999999999999997753 3
Q ss_pred EEEEEcCCCCCcchh-hhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q psy14484 128 KFICLQNSYHGETLG-ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206 (430)
Q Consensus 128 ~vl~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 206 (430)
.+++....+++.... ... ....+...++.+..+.. |+++|+ + .+++++|+
T Consensus 85 ~~i~~~~~~~~~~~~~~~~------------~~g~~~~~v~~~~~~~~------------d~~~l~--~---~~~~~~v~ 135 (362)
T 3ffr_A 85 KSFHCVNGSFSKRFYEFAG------------ELGREAYKEEAAFGKGF------------YPADIT--V---PADAEIIC 135 (362)
T ss_dssp EEEEEECSHHHHHHHHHHH------------HTTCEEEEEECCTTCCC------------CGGGCC--C---CTTCCEEE
T ss_pred cEEEEcCcHHHHHHHHHHH------------HhCCCeEEEecCCCCCC------------CHHHHh--c---cCCccEEE
Confidence 555555544442211 111 11123344544433322 667776 2 45788888
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhc-CCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCccccEEE
Q psy14484 207 IEPLVQCAGGMIMYDSIYLKLVREICNNY-NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLPLSLV 283 (430)
Q Consensus 207 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~-gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ig~~ 283 (430)
+++ ++|++|.+.+ +++|.++|++| |+++|+|++|+ ++... ... .. .|+++ ++|.++++ ..+|++
T Consensus 136 ~~~-~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~-~~~~~--~~~--~~--~d~~~~s~~K~~~~~-~G~g~~ 202 (362)
T 3ffr_A 136 LTH-NETSSGVSMP----VEDINTFRDKNKDALIFVDAVSS-LPYPK--FDW--TK--IDSVFFSVQKCFGLP-AGLGVW 202 (362)
T ss_dssp EES-EETTTTEECC----HHHHTTSGGGSTTSEEEEECTTT-TTSSC--CCT--TS--CSEEEEETTSTTCCC-SCCEEE
T ss_pred EEc-CCCCcceeCC----HHHHHHHHHhCCCCEEEEecccc-cCCcc--cCh--hH--CcEEEEecccccCCC-CceEEE
Confidence 888 9999998877 99999999999 99999999987 32211 111 11 57765 45999854 357889
Q ss_pred EEcHHHHHhhhcc---CCccccc------------ccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHH
Q psy14484 284 MTTDKIYNSIYYK---NNINIFL------------HSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKAL 345 (430)
Q Consensus 284 ~~~~~~~~~~~~~---~~~~~~~------------~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l 345 (430)
++++++.+.+... +...+.. ....++.+..++.++.++++.+.. ++..++.+++.+++.+.|
T Consensus 203 ~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (362)
T 3ffr_A 203 ILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYI 282 (362)
T ss_dssp EEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 9999887765530 0000000 011345566777777777775543 345566777777888887
Q ss_pred HchhcCCCeeeEe-----ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHH
Q psy14484 346 TSLITHPKIINFR-----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQ 415 (430)
Q Consensus 346 ~~l~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~ 415 (430)
+++ +++.... ..+.++++.+. . . +.++.+.|.++||.+.++ ++++|++++..+++++++
T Consensus 283 ~~~---~g~~~~~~~~~~~~~~~~~~~~~-~----~---~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~ 351 (362)
T 3ffr_A 283 ESS---KVFSFGVEDAKLRSMTTIVANTT-M----L---PGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVH 351 (362)
T ss_dssp HHC---SSEEESSSCGGGBCSSEEEEEES-S----C---HHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHH
T ss_pred HHc---cCceeccCChhhcCCceEEEecC-C----C---HHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHH
Confidence 755 3322111 23455666665 3 1 467999999999999874 478999999999999999
Q ss_pred HHHHHHHHHH
Q psy14484 416 HMTSAIFQTF 425 (430)
Q Consensus 416 ~~~~~l~~~l 425 (430)
+++++|++++
T Consensus 352 ~l~~~l~~~~ 361 (362)
T 3ffr_A 352 KLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998753
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=194.01 Aligned_cols=313 Identities=15% Similarity=0.118 Sum_probs=197.4
Q ss_pred cCCCCCHHH----HHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhc
Q psy14484 47 LFGHSNSYI----NKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNK 121 (430)
Q Consensus 47 ~lG~~~p~v----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~ 121 (430)
.+++++|.+ .+++.+.+.... .+..+...++++.+++.++ .+++++++||++|++.+++.+ ..
T Consensus 7 ~l~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~--~~~~i~~~sgt~al~~~l~~l~~~----- 74 (373)
T 3frk_A 7 SFKPMHDEIEYEIKFKFEEIYKRNW-----FILGDEDKKFEQEFADYCN--VNYCIGCGNGLDALHLILKGYDIG----- 74 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC-----CSSSHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHTTCC-----
T ss_pred CCCcccCCCCHHHHHHHHHHHHCCC-----ccCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcCCC-----
Confidence 345555544 445544444321 3456788899999999994 459999999999999999977 32
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
+++.|++..++|++........+ .+..+++.+ +.+.. |+++|+++++ +
T Consensus 75 ---~gd~Vi~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------d~~~l~~~l~---~ 123 (373)
T 3frk_A 75 ---FGDEVIVPSNTFIATALAVSYTG-------------AKPIFVEPDIRTYNI------------DPSLIESAIT---E 123 (373)
T ss_dssp ---TTCEEEEETTSCTHHHHHHHHHS-------------CEEEEECEETTTTEE------------CGGGTGGGCC---T
T ss_pred ---CcCEEEECCCCcHHHHHHHHHcC-------------CEEEEEeccccccCc------------CHHHHHHhcC---C
Confidence 56789999999987643322211 122334332 21221 6788887775 4
Q ss_pred CeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCC-
Q psy14484 201 KIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITG- 275 (430)
Q Consensus 201 ~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~g- 275 (430)
++++|+ + . +++|...+ +++|.++|+++|+++|+||+|+ +|.. +.....+..+|++++| |.+++
T Consensus 124 ~~~~v~--~-~-n~~G~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~---~~~~~~~~~~d~~~~S~~~~K~l~~~ 191 (373)
T 3frk_A 124 KTKAII--A-V-HLYGQPAD----MDEIKRIAKKYNLKLIEDAAQA-HGSL---YKGMKVGSLGDAAGFSFYPAKNLGSL 191 (373)
T ss_dssp TEEEEE--E-E-CCTTCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCS
T ss_pred CCeEEE--E-E-CCCcCccc----HHHHHHHHHHcCCEEEEECCcc-cCCE---ECCEeccccccEEEEeCcCCCccCcc
Confidence 677777 3 3 45776666 9999999999999999999997 3221 2223344457888877 99987
Q ss_pred CccccEEEEEcH-HHHHhhhc---cCCccc---ccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch
Q psy14484 276 GYLPLSLVMTTD-KIYNSIYY---KNNINI---FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 276 G~~~ig~~~~~~-~~~~~~~~---~~~~~~---~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l 348 (430)
| ..|+++.+. ++.+.+.. .+.... ...+.++..+++.++.+...++.+ ++..++.+++.+++.+.|+++
T Consensus 192 g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 267 (373)
T 3frk_A 192 G--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNP 267 (373)
T ss_dssp S--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCT
T ss_pred c--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC
Confidence 5 367777764 45544432 111000 111234444666555555444432 346677778888888887765
Q ss_pred h-cCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC----------------------------C
Q psy14484 349 I-THPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG----------------------------N 399 (430)
Q Consensus 349 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~----------------------------~ 399 (430)
. ..+.... .....++.+.+. .. . ...+.+.|.++||.+.+.. .
T Consensus 268 ~~~~~~~~~-~~~~~~~~~~~~-~~---~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (373)
T 3frk_A 268 NVIIPVEAD-YAKHVWYTFVIR-SE---K---RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANE 339 (373)
T ss_dssp TEECCCCCT-TEECCCSSEEEE-ES---S---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHH
T ss_pred ceEeccCCC-CCceeeEEEEEE-eC---C---HHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhC
Confidence 2 1111100 011222222222 11 1 3679999999999887421 5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+|++++..+|++||++++++|+++..
T Consensus 340 ~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 340 ILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 799999999999999999999987643
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=186.66 Aligned_cols=316 Identities=13% Similarity=0.151 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl 130 (430)
.|++++++.+++.... ...+..+...++++.+++.++. ++.++++||++|++.+++.+ .. +++.|+
T Consensus 16 ~~~~~~a~~~~l~~~~---~~~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~al~~~l~~l~~~--------~gd~Vi 82 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQ---WWRMGGDEVNSFEREFAAHHGA--AHALAVTNGTHALELALQVMGVG--------PGTEVI 82 (388)
T ss_dssp CHHHHHHHHHHHHTSC---CBTTTCSHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHHHTTCC--------TTCEEE
T ss_pred CHHHHHHHHHHHHcCC---eeecCCHHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHcCCC--------CcCEEE
Confidence 3899999999887632 1234456778999999999963 35555666799999999987 32 567899
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep 209 (430)
+.+++||+........+ .....++.+.. +.. |+++|+++++ +++++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~~------------d~~~l~~~i~---~~~~~v~--~ 132 (388)
T 1b9h_A 83 VPAFTFISSSQAAQRLG-------------AVTVPVDVDAATYNL------------DPEAVAAAVT---PRTKVIM--P 132 (388)
T ss_dssp EESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCCB------------CHHHHHHHCC---TTEEEEC--C
T ss_pred ECCCccHHHHHHHHHcC-------------CEEEEEecCCCcCCC------------CHHHHHHhcC---cCceEEE--E
Confidence 99999998754332211 22334443321 222 7899999885 4677776 5
Q ss_pred ccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc
Q psy14484 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT 286 (430)
Q Consensus 210 ~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~ 286 (430)
.+ ++|.+.+ +++|.++|++||+++|+||+|+ |....|.. +..++ ..++.+|| |.++|| ++|+++++
T Consensus 133 -~n-~tG~~~~----l~~i~~la~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g~--~~G~~~~~ 201 (388)
T 1b9h_A 133 -VH-MAGLMAD----MDALAKISADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTAG--EGGAVVFP 201 (388)
T ss_dssp -BC-GGGCCCC----HHHHHHHHHHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCSS--SCEEEEEC
T ss_pred -eC-CccCcCC----HHHHHHHHHHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccCC--CeEEEEEC
Confidence 44 4676766 9999999999999999999998 33222221 22222 23455666 677664 68999988
Q ss_pred HH-H--HHhhhc---cCCc---ccc---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 287 DK-I--YNSIYY---KNNI---NIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 287 ~~-~--~~~~~~---~~~~---~~~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
++ + .+.+.. .+.. ..+ ..+.++..+++.++++.+.++.++ +..++.+++.+++.+.|+++......
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~~~~~~~ 279 (388)
T 1b9h_A 202 DGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAIDGVVPQ 279 (388)
T ss_dssp TTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTSTTCEEC
T ss_pred CHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCCCcccc
Confidence 75 5 454421 0000 001 012223346665555545554332 35666777788888888765222111
Q ss_pred ee----EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC--------------------------------
Q psy14484 355 IN----FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-------------------------------- 398 (430)
Q Consensus 355 ~~----~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-------------------------------- 398 (430)
.. .+..+.++++.+. ... ......+.+.|.++||.+.++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (388)
T 1b9h_A 280 GGDVRADRNSHYMAMFRIP-GLT---EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAI 355 (388)
T ss_dssp CCCTTCCBCCCSEEEEECT-TCC---HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHH
T ss_pred CCCcCCCccceEEEEEEeC-CcC---cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHH
Confidence 10 0123567777665 311 0014679999999999987531
Q ss_pred --CEEEEeCCCCC-CHHHHHHHHHHHHHHHHH
Q psy14484 399 --NTVYLMPPYIL-NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 --~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~ 427 (430)
..+|++++..+ |++||+.+++.|++++++
T Consensus 356 ~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 356 SSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 25899999999 999999999999998765
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=188.77 Aligned_cols=307 Identities=12% Similarity=0.051 Sum_probs=195.1
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 46 NLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 46 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
..+.+.+++..+++.+. .... .....+.++...++++.++++++. +++++++||++|+..+++.+.. +
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~-~~y~~~~~~~~~~l~~~la~~~g~--~~~i~~~sG~~ai~~~~~~~~~--------~ 97 (389)
T 3acz_A 30 STFCFDSTQQGADLFMG-KGEG-HIYSRLGNPTVEQFEEMVCSIEGA--AGSAAFGSGMGAISSSTLAFLQ--------K 97 (389)
T ss_dssp SBBCCSSHHHHHHHHTT-CSSC-CCBTTTCCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHTTTCC--------T
T ss_pred CceecCChHHHHHhhcC-CCCC-cccCCCCChHHHHHHHHHHHHhCC--CeEEEeCCHHHHHHHHHHHHhC--------C
Confidence 44566666544433221 1111 122356678889999999999953 4788888999999999987643 5
Q ss_pred CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
+++|++.++.||+....... .......+..+++.. |+++++++++ +++++|
T Consensus 98 gd~vl~~~~~y~~~~~~~~~---------~~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~~~~v 148 (389)
T 3acz_A 98 GDHLIAGDTLYGCTVSLFTH---------WLPRFGIEVDLIDTS-----------------DVEKVKAAWK---PNTKMV 148 (389)
T ss_dssp TCEEEEESSCCHHHHHHHHH---------HHHHTTCEEEEECTT-----------------CHHHHHHTCC---TTEEEE
T ss_pred CCEEEEeCCCchHHHHHHHH---------HHHHcCCEEEEECCC-----------------CHHHHHHhcC---CCCeEE
Confidence 67899999999875332110 001112233444432 7888888885 578999
Q ss_pred EEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EE
Q psy14484 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SL 282 (430)
Q Consensus 206 i~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~ 282 (430)
++++ ++|++|.+.+ +++|.++|+++|+++|+||+|+++. .+.. .+..+|++ +++|.++++..++ |+
T Consensus 149 ~~~~-~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~~-~~~~-----~~~~~di~~~S~sK~~~~~~~~~~G~ 217 (389)
T 3acz_A 149 YLES-PANPTCKVSD----IKGIAVVCHERGARLVVDATFTSPC-FLKP-----LELGADIALHSVSKYINGHGDVIGGV 217 (389)
T ss_dssp EEES-SCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCTT-TCCG-----GGTTCSEEEEETTTTTTCSSCCCCEE
T ss_pred EEEC-CCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcccc-ccCc-----cccCCeEEEECChhhccCCCCceeEE
Confidence 9999 9999998887 9999999999999999999998542 1222 12457877 6889998854687 99
Q ss_pred EEEcH-HHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-----------hc
Q psy14484 283 VMTTD-KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-----------IT 350 (430)
Q Consensus 283 ~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-----------~~ 350 (430)
+++++ ++++.+.. .....+...++..+.++...|+.+. ...++..+..+.+.+.|++. ..
T Consensus 218 v~~~~~~~~~~l~~------~~~~~g~~~~~~~~~~~~~~l~~l~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~ 289 (389)
T 3acz_A 218 SSAKTAEDIATIKF------YRKDAGSLMAPMDAFLCARGMKTLP--IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLES 289 (389)
T ss_dssp EEESSHHHHHHHHH------HHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTT
T ss_pred EEECcHHHHHHHHH------HHHhcCCCCCHHHHHHHHcCccHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCC
Confidence 99998 88877654 1111222346776666666665331 22344445555565655442 11
Q ss_pred CCCee----eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee---c--------------------------
Q psy14484 351 HPKII----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP---I-------------------------- 397 (430)
Q Consensus 351 ~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~---~-------------------------- 397 (430)
+|.+. ..++.|.++.+++. . .....+.+.+.|+.+.. +
T Consensus 290 ~~~~~~~~~~~~g~g~~~~~~l~-~--------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g 360 (389)
T 3acz_A 290 FPGHDIAKKQMTGYGSTFLFEMK-S--------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQG 360 (389)
T ss_dssp STTHHHHHHHCSSCCSEEEEEES-S--------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHT
T ss_pred CccHHHHHhhCCCCCeEEEEEEC-C--------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcC
Confidence 11111 11345788888876 3 13455556666776544 1
Q ss_pred --CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 398 --GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 398 --~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+.+|++++...+++.++.+.++|
T Consensus 361 ~~~~~iRlsvg~~~~~~li~~l~~al 386 (389)
T 3acz_A 361 ITPELVRISVGIENVDDIIADLKQAL 386 (389)
T ss_dssp CCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCcCeEEEEeccCCHHHHHHHHHHHH
Confidence 368999988765444444444333
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=188.90 Aligned_cols=279 Identities=14% Similarity=0.047 Sum_probs=182.9
Q ss_pred HHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccC
Q psy14484 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 160 (430)
Q Consensus 81 ~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
++++.+++.++. ++.++++||++|+..+++.+.. +++.|++.+++||+......... ....
T Consensus 2 ~l~~~la~~~g~--~~~i~~~sG~~a~~~~~~~~~~--------~g~~v~~~~~~~~~~~~~~~~~~---------~~~g 62 (331)
T 1pff_A 2 ALEGKIAKLEHA--EACAATASGMGAIAASVWTFLK--------AGDHLISDDCLYGCTHALFEHQL---------RKFG 62 (331)
T ss_dssp HHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESCCCHHHHHHHHTHH---------HHTT
T ss_pred hHHHHHHHHhCC--CeEEEeCChHHHHHHHHHHhcC--------CCCEEEEcCCCcchHHHHHHHHH---------HhcC
Confidence 577888888864 3666777789999999997643 56789999999987643321100 0011
Q ss_pred CCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHh-cCCEE
Q psy14484 161 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNN-YNIHL 239 (430)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~-~gi~l 239 (430)
.+...++.. |++++++.++ +++++|++++ ++|++|.+.+ +++|.++|++ +|+++
T Consensus 63 ~~~~~~~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~nptG~~~~----~~~i~~~~~~~~~~~l 117 (331)
T 1pff_A 63 VEVDFIDMA-----------------VPGNIEKHLK---PNTRIVYFET-PANPTLKVID----IEDAVKQARKQKDILV 117 (331)
T ss_dssp CEEEEECTT-----------------STTHHHHTCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHTTSSSCEE
T ss_pred CEEEEeCCC-----------------CHHHHHHhhc---CCCeEEEEEC-CCCCcCcccC----HHHHHHHHhhhcCCEE
Confidence 222344332 6678888775 5789999999 9999998887 9999999999 99999
Q ss_pred EEeccccCCCCcccccccccCCCCCceeeeecccCCCccc-cEEEEEcH-HHHHhhhccCCccccccc-CCCCCCHHHHH
Q psy14484 240 IADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLP-LSLVMTTD-KIYNSIYYKNNINIFLHS-HSYSGNPLACC 316 (430)
Q Consensus 240 i~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~-ig~~~~~~-~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~ 316 (430)
|+||+|+.+ .... .. .++....+.+++|.++++..| +|++++++ ++.+.+.. .... .+...+++++.
T Consensus 118 i~D~a~~~~-~~~~--~~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~ 187 (331)
T 1pff_A 118 IVDNTFASP-ILTN--PL-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ------GIKDITGAIISPHDAW 187 (331)
T ss_dssp EEECTTTHH-HHCC--GG-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT------CCCCCCCCCCCHHHHH
T ss_pred EEECCCccc-ccCC--hh-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH------HHHhhcCCCCCHHHHH
Confidence 999999722 1111 11 223323334688999874367 78999998 88887765 2233 34566777777
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-----------hcCCCee----eEeecceEEEEEEeecCCccchhHHH
Q psy14484 317 AALATLEIFNKDNILQRISQDMKKITKALTSL-----------ITHPKII----NFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 317 aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-----------~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
++.++++.+. ...+...+..+.+.+.+++. ...+.+. ..++.+.++.+.+. + ..
T Consensus 188 ~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~ 256 (331)
T 1pff_A 188 LITRGTLTLD--MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G--------LE 256 (331)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S--------HH
T ss_pred HHHcCcchHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C--------HH
Confidence 6666666432 12233333444444444321 1112111 11346778777665 2 24
Q ss_pred HHHHHHHHCCcEEeec-------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 382 KFFVAALKNELLLRPI-------------------------------GNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 382 ~~~~~l~~~Gv~~~~~-------------------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
.+.+.|.++||.+... .+.+|++++..+++++++.++++|+++
T Consensus 257 ~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 257 KAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 5777888889965321 378999999999999999999988754
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-22 Score=190.88 Aligned_cols=293 Identities=12% Similarity=0.087 Sum_probs=189.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+..+...+++++++++.+ .+++++++||++|+..+++.++. +++.||+.++.|++.......
T Consensus 76 ~r~~~p~~~~l~~~la~~~g--~~~~~~~~sG~~Ai~~al~~l~~--------~Gd~Vi~~~~~y~~~~~~~~~------ 139 (414)
T 3ndn_A 76 SRYGNPTVSVFEERLRLIEG--APAAFATASGMAAVFTSLGALLG--------AGDRLVAARSLFGSCFVVCSE------ 139 (414)
T ss_dssp TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCC--------TTCEEEEESCCCHHHHHHHHT------
T ss_pred CCCCChHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEcCCccchHHHHHHH------
Confidence 35678899999999999984 57899999999999999987754 568899999999985332211
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.+.....+..+++.. |+++|+++++ +++++|++++ ++|++|.+.+ +++|.++
T Consensus 140 ---~~~~~g~~~~~v~~~-----------------d~~~l~~ai~---~~t~~v~le~-p~NptG~~~~----l~~i~~l 191 (414)
T 3ndn_A 140 ---ILPRWGVQTVFVDGD-----------------DLSQWERALS---VPTQAVFFET-PSNPMQSLVD----IAAVTEL 191 (414)
T ss_dssp ---HHHHTTCEEEEECTT-----------------CHHHHHHHTS---SCCSEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ---HHHHcCcEEEEeCCC-----------------CHHHHHHhcC---CCCeEEEEEC-CCCCCCcccc----HHHHHHH
Confidence 011122344455543 7899999885 4688999999 9999998876 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCC-CccccEEEEEcHHHHH-hhhccCCcccccccCCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTTDKIYN-SIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~g-G~~~ig~~~~~~~~~~-~~~~~~~~~~~~~~~t~~ 309 (430)
|+++|+++|+||+|+ ++..+.....+....+.+++|.+++ |.+++|+++++++.+. .+.. . ...++. .
T Consensus 192 a~~~g~~livDe~~~----~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~---~-~~~~g~--~ 261 (414)
T 3ndn_A 192 AHAAGAKVVLDNVFA----TPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---L-MRHTGP--A 261 (414)
T ss_dssp HHHTTCEEEEECTTT----HHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH---H-HHHHCC--C
T ss_pred HHHcCCEEEEECCCc----ccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH---H-HHHcCC--C
Confidence 999999999999986 2211111233444445568899988 4368999999987765 4432 0 001222 2
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCe----------eeEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKI----------INFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~----------~~~~~~g~~~~~~~~~~~~~ 374 (430)
.++..+..+...++.+. ...++..++.+++.+.|++... +|.+ ...++.|.++++++. .+..
T Consensus 262 ~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~-~~~~ 338 (414)
T 3ndn_A 262 MSAFNAWVLLKGLETLA--IRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALD-CPED 338 (414)
T ss_dssp CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEEC-SCGG
T ss_pred CCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEc-CCcc
Confidence 35665555544444332 2345556666777777764311 1111 112457899999997 4200
Q ss_pred cchhHHHHHHHHHHHCCcEEee----------------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRP----------------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~----------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.....+.+|.+.|...++.+.. .++.+|+++.. |+++.+++.|+++|
T Consensus 339 ~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al 413 (414)
T 3ndn_A 339 VAKQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL 413 (414)
T ss_dssp GHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 0011246777777655433321 13689998775 44566666666654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-20 Score=182.56 Aligned_cols=315 Identities=11% Similarity=0.097 Sum_probs=201.4
Q ss_pred cccCCCCCHHHHHHHHHHHhhccccccCCCC-CHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC
Q psy14484 45 VNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF 123 (430)
Q Consensus 45 ~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~ 123 (430)
...++ .+|++.+++.+.+.... +.. .+...++++.+++.++ .+++++++||++|++.+++++.
T Consensus 25 ~p~~~-~p~~~~~a~~~~~~~~~-----y~~~~~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~l~~l~-------- 88 (424)
T 2po3_A 25 RPNRI-DRARLYERLDRALDSQW-----LSNGGPLVREFEERVAGLAG--VRHAVATCNATAGLQLLAHAAG-------- 88 (424)
T ss_dssp CCCCC-CHHHHHHHHHHHHHHTC-----CSSSCHHHHHHHHHHHHHHT--SSEEEEESCHHHHHHHHHHHHT--------
T ss_pred CCCCC-ChHHHHHHHHHHHhcCC-----cccCCHHHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHcC--------
Confidence 34455 35789999988876521 122 4777899999999994 4799999999999999999873
Q ss_pred CCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 124 ~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
.++.|++.+++|+++....... + .....++.+. .+.. |+++|++.++ +++
T Consensus 89 -~gd~Vlv~~~~~~~~~~~~~~~-G------------~~~~~v~~~~~~~~~------------d~~~l~~~i~---~~~ 139 (424)
T 2po3_A 89 -LTGEVIMPSMTFAATPHALRWI-G------------LTPVFADIDPDTGNL------------DPDQVAAAVT---PRT 139 (424)
T ss_dssp -CCSEEEEESSSCTHHHHHHHHT-T------------CEEEEECBCTTTSSB------------CHHHHGGGCC---TTE
T ss_pred -CCCEEEECCCccHHHHHHHHHc-C------------CEEEEEecCCCcCCc------------CHHHHHHhhC---cCC
Confidence 2478999999999875432221 1 1223444332 1222 7888888775 467
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee----cccCCCc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITGGY 277 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~ 277 (430)
++|++.+ ++|...+ +++|.++|+++|+++|+||+|+ |+.+.+.. .+..+|++++| |.+++
T Consensus 140 ~~v~~~~----~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-- 204 (424)
T 2po3_A 140 SAVVGVH----LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-- 204 (424)
T ss_dssp EEEEEEC----GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC--
T ss_pred cEEEEEC----CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC--
Confidence 7777643 3565544 9999999999999999999998 66544422 12225666554 77876
Q ss_pred cccEEEEEc-HHHHHhhhcc---CCcccc---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc
Q psy14484 278 LPLSLVMTT-DKIYNSIYYK---NNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 278 ~~ig~~~~~-~~~~~~~~~~---~~~~~~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 350 (430)
.++|+++++ +++++.+... +..... ..+.++..+++.++++...++.+ +.+.++.+++.+++.+.|+++
T Consensus 205 ~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~~-- 280 (424)
T 2po3_A 205 FEGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF--PEVIDRNRRNHAAYREHLADL-- 280 (424)
T ss_dssp SSCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCSC--
T ss_pred CCCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC--
Confidence 489999998 7877665430 000000 01112233455555555444433 235666677777777777654
Q ss_pred CCCeeeEe-ecc-----eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-C-------------------------
Q psy14484 351 HPKIINFR-QKG-----MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-G------------------------- 398 (430)
Q Consensus 351 ~~~~~~~~-~~g-----~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~------------------------- 398 (430)
+.+.... ..| .++.+.+. +...... ..++.+.|.++||.+.+. .
T Consensus 281 -~g~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~ 356 (424)
T 2po3_A 281 -PGVLVADHDRHGLNNHQYVIVEID-EATTGIH--RDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAA 356 (424)
T ss_dssp -TTEEECCGGGGSCCCCCCEEEEEC-HHHHSSC--HHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHT
T ss_pred -CCccccCCCCCCccccEEEEEEEC-Cccchhh--HHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhc
Confidence 3332221 222 33445444 2000001 357888999999998762 1
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
..+|+.++..++++++++++++|++++.+
T Consensus 357 ~~l~l~~~~~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 357 RVLSLPTGTAIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp TEEEECCSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 12777777999999999999999998764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=183.63 Aligned_cols=305 Identities=15% Similarity=0.136 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
|++.+++.+.+... .....+...++++.+++.++ .+++++++||++|++.|++.+.. .+++.|++.
T Consensus 16 ~~v~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--~~~~~~~~sGt~al~~al~~~~~-------~~gd~Vi~~ 81 (367)
T 3nyt_A 16 DKIDAGIQRVLRHG-----QYILGPEVTELEDRLADFVG--AKYCISCANGTDALQIVQMALGV-------GPGDEVITP 81 (367)
T ss_dssp HHHHHHHHHHHHHC-----CCSSCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHhcC-----CccCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhCC-------CCcCEEEEC
Confidence 34555555554432 13456778899999999995 45899999999999999998732 156789999
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
.++|++........+ ....+++.+.. +.. |+++|+++++ +++++|+.+
T Consensus 82 ~~~~~~~~~~~~~~G-------------~~~~~~~~~~~~~~~------------d~~~l~~~i~---~~~~~v~~~--- 130 (367)
T 3nyt_A 82 GFTYVATAETVALLG-------------AKPVYVDIDPRTYNL------------DPQLLEAAIT---PRTKAIIPV--- 130 (367)
T ss_dssp SSSCTHHHHHHHHTT-------------CEEEEECBCTTTCSB------------CGGGTGGGCC---TTEEEECCB---
T ss_pred CCccHHHHHHHHHcC-------------CEEEEEecCCccCCc------------CHHHHHHhcC---cCCcEEEee---
Confidence 999987654433322 22234444322 222 6788888774 578888733
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee----cccCC-CccccEEEEE
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS----KGITG-GYLPLSLVMT 285 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s----K~l~g-G~~~ig~~~~ 285 (430)
+++|...+ +++|.++|+++|+++|+||+|+ |....+. ..+...|++++| |.+++ | . .|+++.
T Consensus 131 -~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g-~-gg~~~~ 198 (367)
T 3nyt_A 131 -SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYG-D-GGAIFT 198 (367)
T ss_dssp -CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS-C-CEEEEE
T ss_pred -CCccChhh----HHHHHHHHHHcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcC-c-eeEEEe
Confidence 34565555 9999999999999999999997 3322222 122223888877 99988 6 3 777877
Q ss_pred c-HHHHHhhhc---cCCcccc---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-cCCCeeeE
Q psy14484 286 T-DKIYNSIYY---KNNINIF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINF 357 (430)
Q Consensus 286 ~-~~~~~~~~~---~~~~~~~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~ 357 (430)
+ +++.+.+.. .+....+ ..+.++..+++.++++.+.++.+ +++.++.+++.+++++.|+++. ..+....
T Consensus 199 ~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~- 275 (367)
T 3nyt_A 199 NDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEV- 275 (367)
T ss_dssp SCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCT-
T ss_pred CCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCC-
Confidence 4 667655543 0100000 11346677888888777777644 3466777888889999888762 1121111
Q ss_pred eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------------------------CCEEEEeCCCCCCHH
Q psy14484 358 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------------------------GNTVYLMPPYILNKN 412 (430)
Q Consensus 358 ~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------------------------~~~lR~~~~~~~t~e 412 (430)
.....+..+.+. .. . ...+.+.|.++||.+.+. ...+|+.++...|++
T Consensus 276 ~~~~~~~~~~~~-~~---~---~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~ 348 (367)
T 3nyt_A 276 NNISVYAQYTVR-MD---N---RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTA 348 (367)
T ss_dssp TEECCCSSEEEE-CS---S---HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHH
T ss_pred CCceeeEEEEEE-eC---C---HHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHH
Confidence 011112112222 11 1 367899999999977631 137899999999999
Q ss_pred HHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQT 424 (430)
Q Consensus 413 ~i~~~~~~l~~~ 424 (430)
|++.+++.|++.
T Consensus 349 ~i~~v~~~~~~~ 360 (367)
T 3nyt_A 349 SIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=193.50 Aligned_cols=322 Identities=11% Similarity=0.110 Sum_probs=186.5
Q ss_pred CCHHHHHHHHHHHhh-cc--cccc----CCCCCHHHHH-HHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 51 SNSYINKALKNQLNK-LE--HVML----SNLTHKPVIK-LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~--~~~~----~~~~~~~~~~-l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
.+|+|++++.+++.+ .. +... .....+..++ .++++++.++.+.+.++ +++|++|++.+++.+..
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~-~~sGs~a~~~a~~~~~~------ 114 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQ-PHSGSQANFAVYTALLQ------ 114 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeE-ecCcHHHHHHHHHHhcC------
Confidence 699999999988743 21 1110 0111233333 44788888875544444 56779999999988754
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++.|++.++.|+++......... .... ......+.+..... |+++|++++++. ++
T Consensus 115 --~gd~v~~~~~~~~~~~~~~~~~~~---~g~~-----~~~~~~~~~~~~~~------------d~~~l~~~i~~~--~~ 170 (420)
T 3gbx_A 115 --PGDTVLGMNLAQGGHLTHGSPVNF---SGKL-----YNIVPYGIDESGKI------------DYDEMAKLAKEH--KP 170 (420)
T ss_dssp --TTCEEEEEEEC------------C---HHHH-----SEEEEEEECTTCSC------------CHHHHHHHHHHH--CC
T ss_pred --CCCEEEecchhhcceeccchhhhh---cccc-----eeEEeccCCccCCc------------CHHHHHHHHHhc--CC
Confidence 667888888877653211111000 0000 01111222221212 889999999752 46
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceee--eecccCCCccc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLC--LSKGITGGYLP 279 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~~~ 279 (430)
++|++++ .++ |...+ +++|.++|++||+++|+||+|. |+.+.+.... ... .+|+++ +||+++| .+
T Consensus 171 ~~v~~~~-~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~-~~di~~~s~sK~~~g--~~ 238 (420)
T 3gbx_A 171 KMIIGGF-SAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPN--PVP-HAHVVTTTTHKTLAG--PR 238 (420)
T ss_dssp SEEEECC-TTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCC--STT-TSSEEEEESSGGGCS--CS
T ss_pred eEEEEec-Ccc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCc--ccc-cCCEEEeecccCCCC--CC
Confidence 6777744 333 33444 9999999999999999999975 4433332111 111 378886 6699974 35
Q ss_pred cEEEEEcH---HHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 280 LSLVMTTD---KIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 280 ig~~~~~~---~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
.|++++++ ++.+.+.. ..+.++++. +...++++..++..... ++..++++++.+++.+.|++. ...
T Consensus 239 gg~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 311 (420)
T 3gbx_A 239 GGLILAKGGDEELYKKLNS------AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR-GYK 311 (420)
T ss_dssp CEEEEESSCCHHHHHHHHH------HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE
T ss_pred ceEEEEcCCcHHHHHHhhh------hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-CCe
Confidence 68889887 77666654 122222322 33333333334432211 345677788888888888763 211
Q ss_pred CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee-------c----CCEEEEeCCCC----CCHHHHHHH
Q psy14484 353 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP-------I----GNTVYLMPPYI----LNKNEIQHM 417 (430)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~-------~----~~~lR~~~~~~----~t~e~i~~~ 417 (430)
.+ .....+.++++.+. .... . ...+.+.|.++||.+.+ + ...+||+++.. .++++++++
T Consensus 312 ~~-~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~ 385 (420)
T 3gbx_A 312 VV-SGGTENHLFLLDLV-DKNL-T---GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKEL 385 (420)
T ss_dssp EG-GGSCSSSEEEEECG-GGTC-C---HHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred ec-cCCCCCeEEEEEcC-CCCC-C---HHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHH
Confidence 11 11134666676665 3111 1 35678888889999887 2 24699998765 458999999
Q ss_pred HHHHHHHHHHh
Q psy14484 418 TSAIFQTFNEV 428 (430)
Q Consensus 418 ~~~l~~~l~~~ 428 (430)
+++|++++.+.
T Consensus 386 ~~~l~~~l~~~ 396 (420)
T 3gbx_A 386 AGWMCDVLDNI 396 (420)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCc
Confidence 99999988653
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=187.73 Aligned_cols=330 Identities=14% Similarity=0.112 Sum_probs=190.1
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhh-cccccc--CCC----CCHHHHHHH-HHHHhhcCCCCCeE-EEcCCchHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNK-LEHVML--SNL----THKPVIKLS-EKLSSLTQYKLGHC-FYGSDGASA 106 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~~~~--~~~----~~~~~~~l~-~~l~~~~~~~~~~v-~~~~sgteA 106 (430)
.+++.++ .+ +.+|+|++++.+++.. +..... ..+ ..+..++++ +.+++.++ .+.+ ++++||++|
T Consensus 34 ~i~l~~~--~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~v~~~~Gs~a 106 (425)
T 3ecd_A 34 QVELIAS--EN---IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN--AGHANVQPHSGAQA 106 (425)
T ss_dssp SEECCTT--CC---CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT--CSEEECCCSSHHHH
T ss_pred ceeeecc--cC---CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC--CCCceeecCchHHH
Confidence 4666554 22 2389999999988742 211100 001 112445555 67778874 4444 459999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcc-hhhhc-cCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET-LGALA-VTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEI 183 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 183 (430)
++.+++++.. +++.|++.+++|++.. ..... ..+. ......++.+ +.+..
T Consensus 107 ~~~al~~~~~--------~gd~Vi~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~~~~~~~~--------- 159 (425)
T 3ecd_A 107 NGAVMLALAK--------PGDTVLGMSLDAGGHLTHGAKPALSGK----------WFNALQYGVSRDTMLI--------- 159 (425)
T ss_dssp HHHHHHHHCC--------TTCEEEEECC----------------------------CEEEEECCCTTTSSC---------
T ss_pred HHHHHHHccC--------CCCEEEEcccccccceecchhhhhccc----------ceeeeecCCCcccCcc---------
Confidence 9999998743 6788999999998732 22111 1110 0011223322 11222
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCC
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEI 262 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~ 262 (430)
|+++|++++++. ++++|++++ .++ |...+ +++|.++|++||+++|+||+|. |+.+.+..... ..
T Consensus 160 ---d~~~l~~~i~~~--~~~~v~~~~-~~~--~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~- 224 (425)
T 3ecd_A 160 ---DYDQVEALAQQH--KPSLIIAGF-SAY--PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE- 224 (425)
T ss_dssp ---CHHHHHHHHHHH--CCSEEEEEC-SCC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-
T ss_pred ---CHHHHHHHHhhc--CCcEEEEcc-ccC--CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-
Confidence 889999999742 456677764 322 32333 8999999999999999999964 44333322111 11
Q ss_pred CCcee--eeecccCCCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-h--cCHHHHHHH
Q psy14484 263 WPDFL--CLSKGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-K--DNILQRISQ 336 (430)
Q Consensus 263 ~~d~~--~~sK~l~gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~--~~~~~~~~~ 336 (430)
.+|++ ++||+++| .++|+++++ +.+.+.+.. ....+.+.+.++...+++..++.... . +++.+++++
T Consensus 225 ~~di~~~s~sK~l~g--~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 297 (425)
T 3ecd_A 225 HAHVVTSTTHKTLRG--PRGGFVLTNDEEIAKKINS-----AVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLA 297 (425)
T ss_dssp TCSEEEEESSGGGCC--CSCEEEEESCHHHHHHHHH-----HHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cCcEEEecCCcccCC--CCcEEEEeCCHHHHHHHHh-----hhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 15666 56699955 478999998 566665543 01111122334444444444443322 2 356677888
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----ec-------CCEEEEeC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYLMP 405 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~-------~~~lR~~~ 405 (430)
+.+++.+.|++. ..... ...+.+.++++.+. .... . ...+.+.|.++||.+. |+ .+.+|+++
T Consensus 298 ~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~ 370 (425)
T 3ecd_A 298 NAQALGDVLKAG-GVDLV-TGGTDNHLLLVDLR-PKGL-K---GAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGT 370 (425)
T ss_dssp HHHHHHHHHHHT-TCEEG-GGSCSSSEEEEECG-GGTC-C---HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEES
T ss_pred HHHHHHHHHHhC-CCeec-cCCCCceEEEEEeC-CCCC-C---HHHHHHHHHHcCCEecccccCCCCCCCCCccceeccc
Confidence 888888888764 21111 11135667777665 3111 1 3568888889999998 32 14799986
Q ss_pred CCCC----CHHHHHHHHHHHHHHHHHh
Q psy14484 406 PYIL----NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 406 ~~~~----t~e~i~~~~~~l~~~l~~~ 428 (430)
+... +++++++++++|++++++.
T Consensus 371 ~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 371 PAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 5544 4999999999999998764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-20 Score=179.88 Aligned_cols=318 Identities=12% Similarity=0.137 Sum_probs=201.3
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~vl 130 (430)
+|++.+++.+.+... + . ....+...++++.+++.++ .+++++++||++|++.+++++ .. +++.|+
T Consensus 11 ~~~v~~a~~~~~~~~-~-~--~~~g~~~~~l~~~la~~~~--~~~v~~~~ggt~al~~~~~~l~~~--------~gd~Vl 76 (394)
T 1o69_A 11 GGNELKYIEEVFKSN-Y-I--APLGEFVNRFEQSVKDYSK--SENALALNSATAALHLALRVAGVK--------QDDIVL 76 (394)
T ss_dssp -CCHHHHHHHHHHHT-T-T--SCTTHHHHHHHHHHHHHHC--CSEEEEESCHHHHHHHHHHHTTCC--------TTCEEE
T ss_pred CHHHHHHHHHHHHcC-C-c--cCCChHHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHcCCC--------CCCEEE
Confidence 467888888887652 1 1 1112567899999999984 489999999999999999987 32 567899
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
+.+++|+++.......+ .....++.+..+.. |+++|++++++.++++++|++++
T Consensus 77 ~~~~~~~~~~~~~~~~g-------------~~~~~v~~~~~~~~------------d~~~l~~~i~~~~~~~~~v~~~~- 130 (394)
T 1o69_A 77 ASSFTFIASVAPICYLK-------------AKPVFIDCDETYNI------------DVDLLKLAIKECEKKPKALILTH- 130 (394)
T ss_dssp EESSSCGGGTHHHHHTT-------------CEEEEECBCTTSSB------------CHHHHHHHHHHCSSCCCEEEEEC-
T ss_pred ECCCccHHHHHHHHHcC-------------CEEEEEEeCCCCCc------------CHHHHHHHHhcccCCceEEEEEC-
Confidence 99999998754433311 22234444322222 78999999975322577777765
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc-
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT- 286 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~- 286 (430)
+ +|...+ +++|.++|+++|+++|+||+|+ |+...+.... .++ .+|+.+|| |.+++ .++|+++++
T Consensus 131 ~---~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~~~~s~s~~K~l~~--~~~G~~~~~~ 198 (394)
T 1o69_A 131 L---YGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNKALG--TFG-EFGVYSYNGNKIITT--SGGGMLIGKN 198 (394)
T ss_dssp G---GGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSS-SEEEEECCTTSSSCC--SSCEEEEESC
T ss_pred C---CCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCcccc--ccc-CcEEEEEeCCccCCC--CCceEEEECC
Confidence 3 454544 9999999999999999999998 6544332111 111 36788885 66765 479999995
Q ss_pred HHHHHhhhccCCcc-----cc---cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEe
Q psy14484 287 DKIYNSIYYKNNIN-----IF---LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR 358 (430)
Q Consensus 287 ~~~~~~~~~~~~~~-----~~---~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 358 (430)
+++++.+....... .+ ..+.++..+++.++.+...++.++ +..++.+++.+++.+.|+++ ........
T Consensus 199 ~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~--~~~~~~~~ 274 (394)
T 1o69_A 199 KEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY--FSFLDELE 274 (394)
T ss_dssp HHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT--EECCCCCT
T ss_pred HHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc--ccccCCCC
Confidence 78777665310000 00 001111235555555555455443 35677888888888888764 11111110
Q ss_pred -ecce--EEEEEEeecCC--------------c--cchhHHHHHHHHHHHCCcEEeecC---------------------
Q psy14484 359 -QKGM--IWAFDVIIEDP--------------E--QIETFSKKFFVAALKNELLLRPIG--------------------- 398 (430)
Q Consensus 359 -~~g~--~~~~~~~~~~~--------------~--~~~~~a~~~~~~l~~~Gv~~~~~~--------------------- 398 (430)
..+. ++.+.+. .+. . ........+.+.|.++||.++++.
T Consensus 275 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~ 353 (394)
T 1o69_A 275 NSRSNRWLSTALIN-FDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSE 353 (394)
T ss_dssp TEECCCSSEEEEES-CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHH
T ss_pred CCcceeEEEEEEec-chhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHH
Confidence 0122 3445544 210 0 000014679999999999887641
Q ss_pred ----CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 399 ----NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 399 ----~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
..+++..+..+|++|+++++++|++++.
T Consensus 354 ~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~ 385 (394)
T 1o69_A 354 LFFQKGICLPSGTAMSKDDVYEISKLILKSIK 385 (394)
T ss_dssp HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence 2455556777999999999999998764
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-21 Score=186.50 Aligned_cols=322 Identities=11% Similarity=0.080 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHHHhh-ccccc---cCCCCC----HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 51 SNSYINKALKNQLNK-LEHVM---LSNLTH----KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~~~~---~~~~~~----~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
.+|+|++++.+++.. +...+ ...... +....+++.+++.++.+.+++++ ++|++|++.+++++..
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~-~sGt~a~~~~~~~~~~------ 109 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQP-NSGSQANQGVYAALIN------ 109 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHSC------
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEe-ccHHHHHHHHHHHhcC------
Confidence 489999999988743 21111 111112 23334556888888765555655 5569999999998854
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++.|++.+++|+++......... .........++.+..+.. |+++|++++++ .++
T Consensus 110 --~gd~vl~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~------------d~~~l~~~i~~--~~~ 165 (417)
T 3n0l_A 110 --PGDKILGMDLSHGGHLTHGAKVSS--------SGKMYESCFYGVELDGRI------------DYEKVREIAKK--EKP 165 (417)
T ss_dssp --TTCEEEEECC------------------------CCSEEEEECCCTTSSC------------CHHHHHHHHHH--HCC
T ss_pred --CCCEEEecccccccccchhhhhhh--------hcceeeeEeccCCCCCCc------------CHHHHHHHHHh--cCC
Confidence 678899999999875321111000 000011122333322222 88999999974 245
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCccc
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLP 279 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ 279 (430)
++|++.+ .+ .|...+ +++|.++|++||+++|+||+|. |+...+... .. .. ..|++++| |+++| .+
T Consensus 166 ~~v~~~~-~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~-~~-~~-~~di~~~s~sK~l~g--~~ 233 (417)
T 3n0l_A 166 KLIVCGA-SA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHP-SP-FP-YAHVVSSTTHKTLRG--PR 233 (417)
T ss_dssp SEEEECC-SS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC-CC-TT-TCSEEEEESSTTTCS--CS
T ss_pred eEEEECC-cc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCC-Cc-cc-cceEEEeeCccccCC--CC
Confidence 6666654 33 376666 9999999999999999999974 322112110 00 01 35777655 99955 47
Q ss_pred cEEEEEc-HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCee
Q psy14484 280 LSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKII 355 (430)
Q Consensus 280 ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 355 (430)
+|+++++ +++.+.+... ..++.+.+.++..+++..+++..... +++.++++++.+++.+.|++. ......
T Consensus 234 ~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 307 (417)
T 3n0l_A 234 GGIIMTNDEELAKKINSA-----IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVS 307 (417)
T ss_dssp CEEEEESCHHHHHHHHHH-----HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG
T ss_pred eeEEEECCHHHHHHHhhh-----hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-Cceecc
Confidence 8999998 7887776540 11222333455555555555554321 355667777778888888763 221111
Q ss_pred eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----------CCEEEEeCCCC----CCHHHHHHHHHH
Q psy14484 356 NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----------GNTVYLMPPYI----LNKNEIQHMTSA 420 (430)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----------~~~lR~~~~~~----~t~e~i~~~~~~ 420 (430)
....+.++++.+. .... . ...+.+.|.++||.+.+. ...+|+.++.. ++++++++++++
T Consensus 308 -~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~ 381 (417)
T 3n0l_A 308 -DGTDNHLVLMSFL-DREF-S---GKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNY 381 (417)
T ss_dssp -GSCSSSEEEEECT-TSSS-C---HHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCCceEEEEEcc-cCCC-C---HHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHH
Confidence 1123445566654 3211 1 356788888999998742 25689876543 579999999999
Q ss_pred HHHHHHH
Q psy14484 421 IFQTFNE 427 (430)
Q Consensus 421 l~~~l~~ 427 (430)
|++++.+
T Consensus 382 l~~~l~~ 388 (417)
T 3n0l_A 382 IADILDD 388 (417)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999864
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=187.41 Aligned_cols=321 Identities=12% Similarity=0.084 Sum_probs=192.1
Q ss_pred CCHHHHHHHHHHHhh-cccccc---CCCCCH---HHHHHH-HHHHhhcCCCCCeEEE-cCCchHHHHHHHHHHHHhhhhc
Q psy14484 51 SNSYINKALKNQLNK-LEHVML---SNLTHK---PVIKLS-EKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~~~~~---~~~~~~---~~~~l~-~~l~~~~~~~~~~v~~-~~sgteA~~~al~~~~~~~~~~ 121 (430)
.+|+|++++.+++.+ +...+. ...... ..++++ +++++.++ .+.+.+ ++||++|++.++++++.
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g--~~~~~v~~~sGs~a~~~a~~~~~~----- 129 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG--AEFANVQPHSGAQANAAVLHALMS----- 129 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC--CCceEEEeCCHHHHHHHHHHHhcC-----
Confidence 489999999987753 221111 011122 335566 88988885 445555 89999999999998764
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHN 200 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 200 (430)
+++.|++.+++|+++........ .. .........+.+ ..+.. |+++|++++++.
T Consensus 130 ---~Gd~Vl~~~~~~~~~~~~~~~~~----~~----g~~~~~~~~~~~~~~~~~------------d~~~l~~~i~~~-- 184 (447)
T 3h7f_A 130 ---PGERLLGLDLANGGHLTHGMRLN----FS----GKLYENGFYGVDPATHLI------------DMDAVRATALEF-- 184 (447)
T ss_dssp ---TTCEEEEECGGGTCCGGGTCTTS----HH----HHSSEEEEECCCTTTCSC------------CHHHHHHHHHHH--
T ss_pred ---CCCEEEecCcccccccchhhhhh----hc----CCeeEEEEcCcCcccCCc------------CHHHHHHHHHhc--
Confidence 56789999999887422111100 00 000111222222 11122 889999998643
Q ss_pred CeEEEEE-ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCcee--eeecccCCC
Q psy14484 201 KIAAIII-EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFL--CLSKGITGG 276 (430)
Q Consensus 201 ~~~~vi~-ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG 276 (430)
+++++++ .| .+++++ ++++|.++|++||+++|+||+|. |+...|..... .. ..|++ ++||+++|
T Consensus 185 ~~~~i~~~~~-~~~~~~-------~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~G- 252 (447)
T 3h7f_A 185 RPKVIIAGWS-AYPRVL-------DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLGG- 252 (447)
T ss_dssp CCSEEEEECS-SCCSCC-------CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGCC-
T ss_pred CCeEEEEcCC-CCCCcc-------CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCCC-
Confidence 3445655 45 443322 39999999999999999999974 44333321111 11 24665 57899964
Q ss_pred ccccEEEEEcHHHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHch-hcC
Q psy14484 277 YLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL-ITH 351 (430)
Q Consensus 277 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l-~~~ 351 (430)
++.|++++++++.+.+.. .....++++ +...++++.+++..+.. ++..+++.++.+++.+.|++. ...
T Consensus 253 -~~gG~i~~~~~~~~~l~~------~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (447)
T 3h7f_A 253 -GRSGLIVGKQQYAKAINS------AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAK 325 (447)
T ss_dssp -CSCEEEEECGGGHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred -CCeEEEEECHHHHHHHhh------hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 688999999988777654 112223332 23334444445543322 345677888888888888764 111
Q ss_pred CCeeeEe--ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----ec-------CCEEEEeCCCC----CCHHHH
Q psy14484 352 PKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----PI-------GNTVYLMPPYI----LNKNEI 414 (430)
Q Consensus 352 ~~~~~~~--~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~~-------~~~lR~~~~~~----~t~e~i 414 (430)
+++..+. ..+.++.+++. .... . ...+.+.|.++||.+. +. ++.+|+.++.. ++++++
T Consensus 326 ~g~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei 400 (447)
T 3h7f_A 326 AGVSVVSGGTDVHLVLVDLR-DSPL-D---GQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEF 400 (447)
T ss_dssp TTCEEGGGSCSSSEEEEECT-TSSC-C---HHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHH
T ss_pred CCeEEecCCCCCCEEEEEcC-CCCC-C---HHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHH
Confidence 1222211 23455566654 3211 1 2456666777799887 32 36799987665 679999
Q ss_pred HHHHHHHHHHHHH
Q psy14484 415 QHMTSAIFQTFNE 427 (430)
Q Consensus 415 ~~~~~~l~~~l~~ 427 (430)
++++++|++++.+
T Consensus 401 ~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 401 TEVADIIATALAT 413 (447)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998864
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=186.05 Aligned_cols=326 Identities=12% Similarity=0.027 Sum_probs=196.0
Q ss_pred CCC-EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHH
Q psy14484 32 SGK-RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEV 109 (430)
Q Consensus 32 ~g~-~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~ 109 (430)
.|. .++|+..+-+. . .-+|++++++. .+ ..+.....++++.+++.++.. ++++++++||++|+..
T Consensus 25 ~g~~~v~~~~~~~~~--~-~~~~~v~~a~~----~~------~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~ 91 (374)
T 2aeu_A 25 KGRDALYDLSGLSGG--F-LIDEKDKALLN----TY------IGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILA 91 (374)
T ss_dssp TCGGGCEECSSCCCC--C-CCCHHHHHHHT----ST------THHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred cCccceeeecccCCC--C-CCCHHHHHHHH----Hh------cCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHH
Confidence 455 56676554211 1 13677777775 11 111334467777777788642 3789999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++.+ +++.|++.+++||++...... ..........+ . |++
T Consensus 92 ~~~~~----------~gd~Vl~~~~~y~~~~~~~~~----------~~~~g~~~~~v--~-----------------d~~ 132 (374)
T 2aeu_A 92 TILAL----------KPKKVIHYLPELPGHPSIERS----------CKIVNAKYFES--D-----------------KVG 132 (374)
T ss_dssp HHHHH----------CCSEEEEECSSSSCCTHHHHH----------HHHTTCEEEEE--S-----------------CHH
T ss_pred HHHhC----------CCCEEEEecCCCCccHHHHHH----------HHHcCcEEEEe--C-----------------CHH
Confidence 99866 246899999999986431100 00011122233 1 678
Q ss_pred HHHHHHHhCCCCeEE-EEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee-
Q psy14484 190 DLEILLKKNHNKIAA-IIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL- 267 (430)
Q Consensus 190 ~le~~l~~~~~~~~~-vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~- 267 (430)
+++++ + +++++ |++++ ++|++|. +...+++|.++|++||+++|+||+|..+ ..+...........+|++
T Consensus 133 ~l~~~-~---~~~~~~v~~~~-p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~-~~~~~~~~~~~~~~~di~~ 203 (374)
T 2aeu_A 133 EILNK-I---DKDTLVIITGS-TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGAR-VRLLFNQPPALKLGADLVV 203 (374)
T ss_dssp HHHTT-C---CTTEEEEEECB-CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHH-HHHHTTCCCHHHHTCSEEE
T ss_pred HHHhc-C---CCccEEEEEcc-CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccc-cccccccCCccccCCcEEE
Confidence 88776 3 46788 88888 8999883 4455999999999999999999988633 111110000111245766
Q ss_pred -eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----H
Q psy14484 268 -CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI----T 342 (430)
Q Consensus 268 -~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l----~ 342 (430)
++||.++| +++|++++++++++.+.. .....+.+.+++.+.++.++|+.+.. +..++..+..+.+ +
T Consensus 204 ~S~sK~l~g--~~~G~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~~~~ 274 (374)
T 2aeu_A 204 TSTDKLMEG--PRGGLLAGKKELVDKIYI------EGTKFGLEAQPPLLAGIYRALKNFNL-ERIRKAFERAKNFDLSKI 274 (374)
T ss_dssp EETTSSSSS--CSCEEEEEEHHHHHHHHH------HHHTTTCBCCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHCCCHHH
T ss_pred ecCcccccC--cceEEEEECHHHHHHHHH------hhccccCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHH
Confidence 58899875 699999999999887765 11112234578888888888875422 1223333333333 3
Q ss_pred HHHHc-hhcC---CCee-eEeecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeec------CCEEEEeCCC-CC
Q psy14484 343 KALTS-LITH---PKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPI------GNTVYLMPPY-IL 409 (430)
Q Consensus 343 ~~l~~-l~~~---~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~------~~~lR~~~~~-~~ 409 (430)
+.|.+ +... +++. ...+.|.++.+... .... ......+++..+ .++||.+.|+ .+++||+++. ..
T Consensus 275 ~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~-~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~ 352 (374)
T 2aeu_A 275 EKLNKELKAIDDNINIVYERTPTGFVIKRVYK-DDTI-NIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDA 352 (374)
T ss_dssp HHHHHHHTTTCTTEEEEEEECSSEEEEEEEES-SHHH-HHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGG
T ss_pred HHHHHhhhhhhhccCcceeeCCceEEEEeecc-cccc-cccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchH
Confidence 44432 2221 1222 23556666554322 1000 000012355444 5679999875 2479998864 23
Q ss_pred CHHHHHHHHHHHHHHHHHhh
Q psy14484 410 NKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~~ 429 (430)
++++++++++.|++++.++.
T Consensus 353 ~~~~l~~l~~~l~~~l~~~~ 372 (374)
T 2aeu_A 353 ERIDDNYIIKAIVESIKMAF 372 (374)
T ss_dssp GGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44458999999998888763
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=185.35 Aligned_cols=286 Identities=11% Similarity=0.037 Sum_probs=184.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+.++...++++.|+++.+ .+.+++++||++|++.++.++ . +++.|++.++.||+.........
T Consensus 62 ~r~~~p~~~~l~~~la~l~g--~~~~~~~~sG~~Ai~~~~~l~-~--------~gd~Vi~~~~~y~~~~~~~~~~~---- 126 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEG--GTRAFAFASGMAATSTVMELL-D--------AGSHVVAMDDLYGGTFRLFERVR---- 126 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTTS-C--------TTCEEEEESSCCHHHHHHHHHTH----
T ss_pred ccCCCHHHHHHHHHHHHHhC--CCCEEEecCHHHHHHHHHHHc-C--------CCCEEEEeCCCchHHHHHHHHhh----
Confidence 35677889999999999985 458888999999999854332 1 56789999999986543322210
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
+.....+..+++.. |+++++++++ +++++|++|+ ++|++|.+.+ +++|.++
T Consensus 127 ----~~~~g~~~~~v~~~-----------------d~~~l~~~i~---~~~~~v~~e~-~~np~G~~~~----l~~i~~l 177 (400)
T 3nmy_A 127 ----RRTAGLDFSFVDLT-----------------DPAAFKAAIR---ADTKMVWIET-PTNPMLKLVD----IAAIAVI 177 (400)
T ss_dssp ----HHHHCCEEEEECTT-----------------SHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HhhcCeEEEEECCC-----------------CHHHHHHHhc---cCCCEEEEEC-CCCCCCeeec----HHHHHHH
Confidence 11112333455443 7899999885 5789999999 9999998877 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEE--EEE-cHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL--VMT-TDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~--~~~-~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|++||+++|+||+|+.. .......++..+.+.+++|.++|++.++|+ ++. ++++.+.+.. .....+.
T Consensus 178 a~~~g~~livDe~~~~~----~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~------~~~~~g~ 247 (400)
T 3nmy_A 178 ARKHGLLTVVDNTFASP----MLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF------LQNSIGG 247 (400)
T ss_dssp HHHTTCEEEEECTTTHH----HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH------HHHHHCC
T ss_pred HHHcCCEEEEECCCccc----ccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH------HHHhcCC
Confidence 99999999999998621 111111224434445688999985456655 443 5677766654 2233445
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeE------------------eecceEEEEEEee
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF------------------RQKGMIWAFDVII 370 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~ 370 (430)
..+++.+..+...++.+. ...++..++++++.+.|++. |.+..+ ++.|.+++|++.
T Consensus 248 ~~~~~~a~~~l~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~- 321 (400)
T 3nmy_A 248 VQGPFDSFLALRGLKTLP--LRMRAHCENALALAQWLETH---PAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK- 321 (400)
T ss_dssp BCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTC---TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET-
T ss_pred CCCHHHHHHHHHhHhHHH--HHHHHHHHHHHHHHHHHHcC---CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC-
Confidence 567777666666555432 23455566666776766543 433333 677999999997
Q ss_pred cCCccchhHHHHHHHHHHHCC----------cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 371 EDPEQIETFSKKFFVAALKNE----------LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 371 ~~~~~~~~~a~~~~~~l~~~G----------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
.+ .+.+..+.+.+.-.+ ++..| ..+.+|+++.....++.++.+.++|
T Consensus 322 ~~----~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al 396 (400)
T 3nmy_A 322 GG----FDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERAL 396 (400)
T ss_dssp TH----HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred Cc----HHHHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHH
Confidence 42 112356666654322 12211 1368999988766655555544444
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.3e-20 Score=183.94 Aligned_cols=320 Identities=10% Similarity=0.061 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhh----hcCCC--CCcEEEEEcCCCCCcchhhhccCCCc
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY----NKGFL--NKKKFICLQNSYHGETLGALAVTNIQ 150 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~----~~g~~--~~~~vl~~~~~yhg~~~~~~~~~~~~ 150 (430)
....+++++++++++.+.+.++|++|||+|+..|+++++.+.. ..|.. ++..|++.+ ..|.+...+....+..
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~-~~h~s~~~~~~~~g~g 226 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSK-ECHYSIQKGAAFLGLG 226 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET-TSCTHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC-CccHHHHHHHHHcCCC
Confidence 4456788899999986677999999999999999999875321 12210 122455544 4455443333222210
Q ss_pred cchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHHH
Q psy14484 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKL 227 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~ 227 (430)
..+++.++.+..++. |+++|++++++. +.++++|+++. +++++|.+.| +++
T Consensus 227 ---------~~~v~~v~~~~~~~~------------d~~~L~~~i~~~~~~g~~~~~Vv~~~-~~n~tG~i~~----l~~ 280 (515)
T 2jis_A 227 ---------TDSVRVVKADERGKM------------VPEDLERQIGMAEAEGAVPFLVSATS-GTTVLGAFDP----LEA 280 (515)
T ss_dssp ---------GGGEEEECBCTTSCB------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SCTTTCCBCC----HHH
T ss_pred ---------CCcEEEEecCCCCcC------------CHHHHHHHHHHHHhCCCCcEEEEEeC-CCCCCCCccC----HHH
Confidence 013345555433333 889999999752 22588899988 8899998887 999
Q ss_pred HHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeee--ecccCCCccccEEEEEcHH--HHHhhhc---c---
Q psy14484 228 VREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK--IYNSIYY---K--- 296 (430)
Q Consensus 228 l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~--sK~l~gG~~~ig~~~~~~~--~~~~~~~---~--- 296 (430)
|.++|+++|+++|+|++|+++......+.....++ .+|++++ +|.++++ .++|+++++++ +++.... +
T Consensus 281 I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~~~~~~~~yl~ 359 (515)
T 2jis_A 281 IADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKRCHGSQASYLF 359 (515)
T ss_dssp HHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHHHHCC------
T ss_pred HHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCC-CCeeEEEEeChHHHHHHHhcCCchhcc
Confidence 99999999999999999987654333222223344 6798887 6988766 57999999876 6543211 0
Q ss_pred CCcc--c-ccccCCC------CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEE
Q psy14484 297 NNIN--I-FLHSHSY------SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFD 367 (430)
Q Consensus 297 ~~~~--~-~~~~~t~------~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~ 367 (430)
+... . .....++ ....+.+.+++.++....-++..++..++++++.+.|+++.++..+. ++....+.|.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~--~~~~~~v~f~ 437 (515)
T 2jis_A 360 QQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVM--EPEFVNVCFW 437 (515)
T ss_dssp ---CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS--CCSSSEEEEE
T ss_pred CCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeC--CCCeeEEEEE
Confidence 0000 0 0000111 11234444444444321123456677788888888887652221111 1223344554
Q ss_pred EeecCC-c---cchhH-------HHHHHHHHHHCCcEEee----c--CCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 368 VIIEDP-E---QIETF-------SKKFFVAALKNELLLRP----I--GNTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 368 ~~~~~~-~---~~~~~-------a~~~~~~l~~~Gv~~~~----~--~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.. +.. . ...++ +..+.+.|.+.|+.+.. . .+++|+++ +..+|+++|++++++|++++.+
T Consensus 438 ~~-p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 438 FV-PPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp EC-CGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred Ee-CccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 43 210 0 01111 22467788888976532 1 25899999 8999999999999999988764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-21 Score=185.14 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=187.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...+++++++++++. ++.++++||++|+..+++.+.. +++.||+.++.|++.......
T Consensus 110 r~~~~~~~~l~~~lA~l~g~--~~~v~~~sG~~Ai~~al~~l~~--------~Gd~Vi~~~~~y~~~~~~~~~------- 172 (445)
T 1qgn_A 110 RYGNPTTVVLEEKISALEGA--ESTLLMASGMCASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIET------- 172 (445)
T ss_dssp GGCCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHHSC--------SSCEEEEETTSCHHHHHHHHH-------
T ss_pred CCCChHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHHhC--------CCCEEEEcCCCchhHHHHHHH-------
Confidence 45678889999999999963 4667778888999999997653 567899999888764321110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe-EEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI-AAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.......++.+++.. |+++|++++++ ++ ++|++++ ++|++|.+.+ +++|.++
T Consensus 173 --~~~~~G~~v~~v~~~-----------------d~~~l~~ai~~---~tv~lV~le~-p~NptG~v~d----l~~I~~l 225 (445)
T 1qgn_A 173 --ILPKMGITATVIDPA-----------------DVGALELALNQ---KKVNLFFTES-PTNPFLRCVD----IELVSKL 225 (445)
T ss_dssp --TGGGGTCEEEEECSS-----------------CHHHHHHHHHH---SCEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHHcCCEEEEeCCC-----------------CHHHHHHHhcc---CCCCEEEEeC-CCCCCCcccC----HHHHHHH
Confidence 011112333455432 78999999973 45 8999999 9999998877 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCCc-cccEEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG~-~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|+++|+++|+||+|+.. ... ......+|+++ ++|.++|+. .++|++++++++++.+.. .......
T Consensus 226 a~~~g~~livD~a~~~~-~~~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~------~~~~~g~ 293 (445)
T 1qgn_A 226 CHEKGALVCIDGTFATP-LNQ-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN------LHHILGG 293 (445)
T ss_dssp HHHTTCEEEEECTTTCT-TTC-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH------HHHHHCC
T ss_pred HHHcCCEEEEECCCccc-ccC-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHH------HHHHhCC
Confidence 99999999999999732 111 12344578875 779998742 369999999998877654 1111111
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..+++.+..+...++.+. ...++..++.+++.+.|++... .|.+. ..++.|.++.|++. .+
T Consensus 294 ~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~-~~- 369 (445)
T 1qgn_A 294 ALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD-GD- 369 (445)
T ss_dssp CCCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES-SC-
T ss_pred CCCHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC-CC-
Confidence 235655554444454332 1234445556677777765411 11110 11346889999887 42
Q ss_pred ccchhHHHHHHHHHHHCCcEEe----------e------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALKNELLLR----------P------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~Gv~~~----------~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...+..+.+.|...++.++ | ..+.+|+++. .||++.+++.|++++
T Consensus 370 ---~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al 442 (445)
T 1qgn_A 370 ---LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQAL 442 (445)
T ss_dssp ---HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHH
Confidence 1113456666542222111 0 0268999877 468999999999998
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
.++
T Consensus 443 ~~~ 445 (445)
T 1qgn_A 443 DSI 445 (445)
T ss_dssp HHC
T ss_pred hhC
Confidence 753
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-20 Score=183.99 Aligned_cols=321 Identities=11% Similarity=0.054 Sum_probs=193.6
Q ss_pred HHHHHHHHHHhhcCCC--CCeEEEcCCchHHHHHHHHHHHHhhh----hcCCCC-Cc-EEEEEcCCCCCcchhhhccCCC
Q psy14484 78 PVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYWY----NKGFLN-KK-KFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~--~~~v~~~~sgteA~~~al~~~~~~~~----~~g~~~-~~-~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
...++.++++++++.+ .+.++|++|||+|+..|+++++.... ..|... ++ .|++.+ ..|.....+....+.
T Consensus 133 le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~-~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 133 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSE-QSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEET-TSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECC-cchHHHHHHHHHcCC
Confidence 3456668889998766 67899999999999999999875321 112100 13 455544 444443222221110
Q ss_pred ccchhhhhccCC-CeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHH
Q psy14484 150 QSFKEIYTSLLN-KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYL 225 (430)
Q Consensus 150 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l 225 (430)
.. .++.++.+..++. |+++|++++++. +.++++|+++. +++++|.+.+ +
T Consensus 212 ----------g~~~v~~v~~~~~~~~------------d~~~L~~~i~~~~~~g~~~~~V~~~~-~~~~tG~i~~----l 264 (504)
T 2okj_A 212 ----------GTDNVILIKCNERGKI------------IPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----I 264 (504)
T ss_dssp ----------CGGGEEEECBCTTSCB------------CHHHHHHHHHHHHHTTCEEEEEEECB-SCSSSCCBCC----H
T ss_pred ----------CcccEEEEecCCCCCC------------CHHHHHHHHHHHHHCCCCceEEEEeC-CCCCCCCcCC----H
Confidence 11 3345555433333 889999999752 22588888888 8889998877 9
Q ss_pred HHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcH-HHHHhhhccCCccc
Q psy14484 226 KLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTD-KIYNSIYYKNNINI 301 (430)
Q Consensus 226 ~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~-~~~~~~~~~~~~~~ 301 (430)
++|.++|++||+++|+|++|+++......+.....++ .+|+++++ |.++++ .++|++++++ ++++..... ....
T Consensus 265 ~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~~~~-~~~~ 342 (504)
T 2okj_A 265 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM-CAGY 342 (504)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC-CCSS
T ss_pred HHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHHhcC-CCcc
Confidence 9999999999999999999986643222111222333 57888876 888766 5899999986 455432110 0000
Q ss_pred cccc----------------CCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEE
Q psy14484 302 FLHS----------------HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365 (430)
Q Consensus 302 ~~~~----------------~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~ 365 (430)
+... .+...+.+.+.++++++..-.-++..++..++++++.+.|+++..+..+....+...++.
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~ 422 (504)
T 2okj_A 343 LFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVC 422 (504)
T ss_dssp SCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEE
T ss_pred ccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEE
Confidence 0000 011123555555555443211134556677788888888876422211111024455556
Q ss_pred EEEeecCCc----cc-------hhHHHHHHHHHHHCCcE-Eee--c-C--CEEEEeCC-CCCCHHHHHHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPE----QI-------ETFSKKFFVAALKNELL-LRP--I-G--NTVYLMPP-YILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 366 ~~~~~~~~~----~~-------~~~a~~~~~~l~~~Gv~-~~~--~-~--~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~ 427 (430)
|... +... .. ......+.+.|.++|++ +.+ . + +++|+++. ..+|+++|++++++|++++++
T Consensus 423 f~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 423 FWYI-PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEC-CGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEe-CccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 6553 2110 00 01135788889999964 332 1 2 47999985 889999999999999998877
Q ss_pred hh
Q psy14484 428 VI 429 (430)
Q Consensus 428 ~~ 429 (430)
++
T Consensus 502 ~~ 503 (504)
T 2okj_A 502 LH 503 (504)
T ss_dssp --
T ss_pred Hh
Confidence 64
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=183.26 Aligned_cols=335 Identities=8% Similarity=-0.044 Sum_probs=202.3
Q ss_pred CCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcCCCCCe-----EEEcCCchHHHHHHHHHHHHhhhh---
Q psy14484 50 HSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGH-----CFYGSDGASAVEVALKMSFHYWYN--- 120 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~-----v~~~~sgteA~~~al~~~~~~~~~--- 120 (430)
+.+|.+.+++.+++...... ...........+++++++++++.+.+. +++++||+||+..++.+++...+.
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688988888876542111 111122245678888899999766554 999999999999999887652211
Q ss_pred -cCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 121 -KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 121 -~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
.|.+ .++.||+.+ +|.......... ..+.+.++.+. .+.. |+++|+++++
T Consensus 133 ~~G~~~~~~~vi~~~--~h~~~~~~~~~~------------G~~v~~v~~~~~~~~~------------d~~~l~~~i~- 185 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP--VQICWHKFARYW------------DVELREIPMRPGQLFM------------DPKRMIEACD- 185 (452)
T ss_dssp HTTCCCSCCEEEESS--CCHHHHHHHHHT------------TCEEEECCCBTTBCSC------------CHHHHHHHCC-
T ss_pred hcCCCCCCcEEEECC--CcHHHHHHHHHc------------CceEEEEecCCCCCeE------------CHHHHHHHHh-
Confidence 2211 134666654 664433222211 22334444432 2232 8899999985
Q ss_pred CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCEEEEeccccCCCC---ccc-ccccccCCCCCcee
Q psy14484 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR---TGK-FFACEHAEIWPDFL 267 (430)
Q Consensus 198 ~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------gi~li~DEv~~g~g~---~g~-~~~~~~~~~~~d~~ 267 (430)
+++++|++.. +++++|.+.+ +++|.++|+++ |+++|+|++|.++.. .+. .+.+.. ...|.+
T Consensus 186 --~~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~~~d~~ 256 (452)
T 2dgk_A 186 --ENTIGVVPTF-GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRL--PRVKSI 256 (452)
T ss_dssp --TTEEEEECBB-SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTS--TTEEEE
T ss_pred --hCCEEEEEEc-CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCC--CCCcEE
Confidence 4678888887 8888998877 99999999996 999999999986532 111 111111 135766
Q ss_pred eee--cccCCCccccEEEEEcHH-HH-Hhhhcc-CCcc----cccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHH
Q psy14484 268 CLS--KGITGGYLPLSLVMTTDK-IY-NSIYYK-NNIN----IFLHSHSYSGNPLACCAALATLEIFNK---DNILQRIS 335 (430)
Q Consensus 268 ~~s--K~l~gG~~~ig~~~~~~~-~~-~~~~~~-~~~~----~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~ 335 (430)
+++ |.+.+| +++|+++++++ +. +.+... .... .+....+..+ ....+..++++.+.. ++..++..
T Consensus 257 ~~~~hK~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~aal~~lg~~g~~~~~~~~~ 333 (452)
T 2dgk_A 257 SASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPA--GQVIAQYYEFLRLGREGYTKVQNASY 333 (452)
T ss_dssp EEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECcccccCCC-CCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChh--HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 665 865555 68999999754 33 333210 0000 0000111111 122233334443322 34456667
Q ss_pred HHHHHHHHHHHchhcCCCeeeE-e----ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c----CCEEE
Q psy14484 336 QDMKKITKALTSLITHPKIINF-R----QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----GNTVY 402 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~-~----~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~----~~~lR 402 (430)
++++++.+.|+++ +.+.-+ + ....++.|.+. ........ ..++.+.|.++|+.+.. . ..++|
T Consensus 334 ~~a~~l~~~L~~~---~~~~~~~~~~~~~~~~~v~f~~~-~~~~~~~~-~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lR 408 (452)
T 2dgk_A 334 QVAAYLADEIAKL---GPYEFICTGRPDEGIPAVCFKLK-DGEDPGYT-LYDLSERLRLRGWQVPAFTLGGEATDIVVMR 408 (452)
T ss_dssp HHHHHHHHHHHTT---SSEEEEEECCTTTBSSEEEEEEC-TTCCCSCC-HHHHHHHHHHTTCBCCEEECSTTCTTCEEEE
T ss_pred HHHHHHHHHHHhC---CCeEEecCCCCCCCeEEEEEEec-CcccccCC-HHHHHHHHHhcCCeeeeeeCCcccCCeEEEE
Confidence 7788888888765 332222 2 35567777766 42100000 25789999999996432 2 24899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+++...+|+++++++++.|++++.++
T Consensus 409 is~~~~~t~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 409 IMCRRGFEMDFAELLLEDYKASLKYL 434 (452)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=190.97 Aligned_cols=288 Identities=13% Similarity=0.167 Sum_probs=184.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
....+...++++++++.++ .+++++++||++|+..++++ .. +++.||+.++.|+++.......
T Consensus 129 ~~g~~~~~~l~~~la~~~g--~~~~i~~~sGt~al~~~l~~-~~--------~Gd~Vi~~~~~y~~~~~~~~~~------ 191 (464)
T 1ibj_A 129 RSGNPTRDALESLLAKLDK--ADRAFCFTSGMAALSAVTHL-IK--------NGEEIVAGDDVYGGSDRLLSQV------ 191 (464)
T ss_dssp TTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHTT-SC--------TTCEEEEESSCCHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHH-hC--------CCCEEEEECCCchhHHHHHHHH------
Confidence 3456788999999999985 45888899999999887752 21 5678999999998763211000
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......+...++.. |+++|+++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 192 ---~~~~G~~v~~v~~~-----------------d~~~l~~~i~---~~tk~v~l~~-p~NptG~v~~----l~~i~~la 243 (464)
T 1ibj_A 192 ---VPRSGVVVKRVNTT-----------------KLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKISEMA 243 (464)
T ss_dssp ---SGGGTCEEEEECTT-----------------SHHHHHHHCC---SSEEEEEECS-SCTTTCCCCC----HHHHHHHH
T ss_pred ---HHHcCCEEEEeCCC-----------------CHHHHHHHhc---cCceEEEEeC-CCCCCCEeec----HHHHHHHH
Confidence 00112233444432 7889998885 5789999999 9999998876 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC--CccccEEEEEcH-HHHHhhhccCCcccccccCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG--GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g--G~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t 307 (430)
++||+++|+||+|.. +.... ..+ ..+|++ +++|.+++ | +++|++++++ ++.+.+.. ......
T Consensus 244 ~~~gi~livDea~~~-g~~~~--~~~---~~~div~~S~sK~~~g~~G-l~~G~l~~~~~~l~~~l~~------~~~~~g 310 (464)
T 1ibj_A 244 HAQGALVLVDNSIMS-PVLSR--PLE---LGADIVMHSATKFIAGHSD-VMAGVLAVKGEKLAKEVYF------LQNSEG 310 (464)
T ss_dssp HTTTCEEEEECTTTC-TTTCC--GGG---TTCSEEEEETTTTTTCSSC-CCCEEEEECSHHHHHHHHH------HHHHTT
T ss_pred HHcCCEEEEECCCcc-cccCC--hhh---cCCEEEEECCcccccCCCC-CcEEEEEEChHHHHHHHHH------HHHhcC
Confidence 999999999999973 21111 112 345766 58899986 5 6889999984 77776654 111123
Q ss_pred CCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHH-------HchhcCCCee----eEeecceEEEEEEeecCCc
Q psy14484 308 YSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKAL-------TSLITHPKII----NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l-------~~l~~~~~~~----~~~~~g~~~~~~~~~~~~~ 374 (430)
...+++++.++.++|+.+.. +...+.+....+++.+.- +.|..+|.+. ..++.|.++++++. +
T Consensus 311 ~~~~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~--- 386 (464)
T 1ibj_A 311 SGLAPFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S--- 386 (464)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C---
T ss_pred CCCCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-C---
Confidence 34467777776666653211 111222233333332210 1122223221 12245778888765 3
Q ss_pred cchhHHHHHHHHHHHCCcEEeec----------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRPI----------------------------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~~----------------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+..+.+.|...|+.+..+ .+.+|++++. |++++++++|++++.
T Consensus 387 --~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~ 460 (464)
T 1ibj_A 387 --VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK 460 (464)
T ss_dssp --HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh
Confidence 111345777776566554322 2579999886 899999999999987
Q ss_pred Hh
Q psy14484 427 EV 428 (430)
Q Consensus 427 ~~ 428 (430)
++
T Consensus 461 ~~ 462 (464)
T 1ibj_A 461 TF 462 (464)
T ss_dssp SC
T ss_pred hc
Confidence 53
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-21 Score=183.34 Aligned_cols=286 Identities=14% Similarity=0.135 Sum_probs=184.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+.++...++++.++++++.. +.++++||++|+..+++ +.. +++.|++.++.|++........
T Consensus 63 r~~~p~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l~~--------~gd~Vl~~~~~y~~~~~~~~~~------ 125 (403)
T 3cog_A 63 RSGNPTRNCLEKAVAALDGAK--YCLAFASGLAATVTITH-LLK--------AGDQIICMDDVYGGTNRYFRQV------ 125 (403)
T ss_dssp ---CHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-TSC--------TTCEEEEESSCCHHHHHHHHHT------
T ss_pred CCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-HhC--------CCCEEEEeCCCcchHHHHHHHH------
Confidence 466788889999999999633 56666778899999988 532 5678999999998753221110
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.+++.. |+++++++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 126 ---~~~~G~~v~~v~~~-----------------d~~~l~~~i~---~~t~~v~~~~-p~nptG~~~~----l~~i~~la 177 (403)
T 3cog_A 126 ---ASEFGLKISFVDCS-----------------KIKLLEAAIT---PETKLVWIET-PTNPTQKVID----IEGCAHIV 177 (403)
T ss_dssp ---GGGGTCEEEEECTT-----------------SHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred ---HHHcCCEEEEECCC-----------------CHHHHHHhcC---cCCeEEEEEC-CCCCCCeeeC----HHHHHHHH
Confidence 01112233444432 6788888885 5789999999 9999998887 99999999
Q ss_pred HhcC-CEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCC
Q psy14484 233 NNYN-IHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 233 ~~~g-i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t 307 (430)
+++| +++|+||+|+.+.. ... .+..+|++ +++|.++| |..++|+++++ +++.+.+.. .....+
T Consensus 178 ~~~g~~~livD~~~~~~~~-~~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~------~~~~~g 245 (403)
T 3cog_A 178 HKHGDIILVVDNTFMSPYF-QRP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF------LQNSLG 245 (403)
T ss_dssp TSSSCCEEEEECTTTCTTT-CCT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH------HHHHHC
T ss_pred HHcCCCEEEEECCCccccc-CCc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH------HHHhcC
Confidence 9999 99999999985432 111 12356777 67899986 43468999995 787776654 222233
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHc-----------hhcCCCee----eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTS-----------LITHPKII----NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-----------l~~~~~~~----~~~~~g~~~~~~~~~~~ 372 (430)
...+++.+.++...++.+. ...++..++...+.+.+++ |..+|.+. ..++.|.++.|.+. ..
T Consensus 246 ~~~~~~~~~~~~~~l~~l~--~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~-~~ 322 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLH--VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIK-GT 322 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-SC
T ss_pred CCCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEec-CC
Confidence 4557777776666665332 1233334444444444432 12223221 12345888888876 42
Q ss_pred CccchhHHHHHHHHHHHCCcEEee-----------------------------c--CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAALKNELLLRP-----------------------------I--GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~~~Gv~~~~-----------------------------~--~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
. ....+.+.+.|+.... + .+.+|++++...++++|+.+.++|
T Consensus 323 ----~---~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al 395 (403)
T 3cog_A 323 ----L---QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQAL 395 (403)
T ss_dssp ----H---HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred ----H---HHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHH
Confidence 1 2344455566764321 1 368999999988877777777777
Q ss_pred HHHH
Q psy14484 422 FQTF 425 (430)
Q Consensus 422 ~~~l 425 (430)
++++
T Consensus 396 ~~~~ 399 (403)
T 3cog_A 396 KAAH 399 (403)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 6543
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=181.86 Aligned_cols=287 Identities=14% Similarity=0.141 Sum_probs=185.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++++. +++++++||++|++.+++ +.. +++.|++..+.||+........
T Consensus 51 ~~~~~~~~~lr~~la~~~g~--~~~i~~~sGt~a~~~al~-~~~--------~gd~Vi~~~~~y~~~~~~~~~~------ 113 (393)
T 1n8p_A 51 RSQNPNRENLERAVAALENA--QYGLAFSSGSATTATILQ-SLP--------QGSHAVSIGDVYGGTHRYFTKV------ 113 (393)
T ss_dssp TTCCHHHHHHHHHHHHHTTC--SEEEEESCHHHHHHHHHH-TSC--------SSCEEEEESSCCHHHHHHHHHT------
T ss_pred cCCChhHHHHHHHHHHHhCC--CcEEEECChHHHHHHHHH-HcC--------CCCEEEEeCCCchHHHHHHHHH------
Confidence 45667888999999999953 367778888999999999 543 5678999999988643211000
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
......++.+++.+ | ++|+++++ +++++|++++ ++|++|.+.+ +++|.++|
T Consensus 114 ---~~~~G~~v~~v~~~-----------------d-~~l~~~i~---~~t~lv~~~~-~~nptG~~~~----l~~i~~la 164 (393)
T 1n8p_A 114 ---ANAHGVETSFTNDL-----------------L-NDLPQLIK---ENTKLVWIET-PTNPTLKVTD----IQKVADLI 164 (393)
T ss_dssp ---STTTCSCCEEESSH-----------------H-HHHHHHSC---SSEEEEEECS-SCTTTCCCCC----HHHHHHHH
T ss_pred ---HHHcCcEEEEeCCC-----------------h-HHHHHhcc---cCceEEEEEC-CCCCcceecC----HHHHHHHH
Confidence 01112233444432 7 88888885 5789999999 9999998887 99999999
Q ss_pred Hhc----CCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCcccc-EEEEEc-HHHHHhhhccCCcccccc
Q psy14484 233 NNY----NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPL-SLVMTT-DKIYNSIYYKNNINIFLH 304 (430)
Q Consensus 233 ~~~----gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~i-g~~~~~-~~~~~~~~~~~~~~~~~~ 304 (430)
+++ |+++|+||+|+.+.. .... ...+|++ +++|.++++++++ |+++++ +++++.+.. ...
T Consensus 165 ~~~~~~~~~~livD~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~------~~~ 232 (393)
T 1n8p_A 165 KKHAAGQDVILVVDNTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF------LQN 232 (393)
T ss_dssp HHHTTTTTCEEEEECTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH------HHH
T ss_pred HHhCCCCCCEEEEeCCcccccc-CCHH-----HcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHH------HHH
Confidence 999 999999999985432 2221 1236766 6789998743788 888885 777777654 111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc------CCCee----------eEee-c-ceEEEE
Q psy14484 305 SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT------HPKII----------NFRQ-K-GMIWAF 366 (430)
Q Consensus 305 ~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~------~~~~~----------~~~~-~-g~~~~~ 366 (430)
......++..+.++..+++.+. ...++..++.+.+.+.|++... .|.+. ..++ . |.++.+
T Consensus 233 ~~g~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~ 310 (393)
T 1n8p_A 233 AIGAIPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISF 310 (393)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEE
T ss_pred hcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEE
Confidence 1112335665555555554331 2234445556666666654311 12111 0123 4 778888
Q ss_pred EEeecCCccchhHHHHHHHHHHHCCcEEe----------e---c---------------CCEEEEeCCCCCCHHHHHHHH
Q psy14484 367 DVIIEDPEQIETFSKKFFVAALKNELLLR----------P---I---------------GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 367 ~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----------~---~---------------~~~lR~~~~~~~t~e~i~~~~ 418 (430)
.+. .+ ...+..+...+...++.++ | . .+.+|++++...++++++.+.
T Consensus 311 ~l~-~~----~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~ 385 (393)
T 1n8p_A 311 RIK-GG----AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIK 385 (393)
T ss_dssp EES-SC----HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHH
T ss_pred EeC-Cc----HHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHH
Confidence 887 42 1113556666543332211 1 0 268999999999999999999
Q ss_pred HHHHHH
Q psy14484 419 SAIFQT 424 (430)
Q Consensus 419 ~~l~~~ 424 (430)
++|+++
T Consensus 386 ~al~~~ 391 (393)
T 1n8p_A 386 QALKQA 391 (393)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-20 Score=177.95 Aligned_cols=318 Identities=12% Similarity=0.131 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHhhcccc--ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcE
Q psy14484 52 NSYINKALKNQLNKLEHV--MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKK 128 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~ 128 (430)
+|++++++.+++...... ....+..+...++++.+++.++. +++++++||++|+..+++++ .. +++.
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~--~~~i~~~~gt~al~~~~~~~~~~--------~gd~ 84 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGV--PYCVPTTSGSTALMLALEALGIG--------EGDE 84 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTCC--------TTCE
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCC--------CcCE
Confidence 689999999998764321 11223345678999999999853 47888999999999999987 32 5678
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEE
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ 207 (430)
|++..++|++........+ .....++.+. ++.. |+++|+++++ +++++|++
T Consensus 85 Vl~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------d~~~l~~~i~---~~~~~v~~ 136 (418)
T 2c81_A 85 VIVPSLTWIATATAVLNVN-------------ALPVFVDVEADTYCI------------DPQLIKSAIT---DKTKAIIP 136 (418)
T ss_dssp EEEESSSCTHHHHHHHHTT-------------CEEEEECBCTTTCSB------------CHHHHGGGCC---TTEEEECC
T ss_pred EEECCCccHhHHHHHHHcC-------------CEEEEEecCCCCCCc------------CHHHHHHhhC---CCCeEEEE
Confidence 9999999988754333211 1223444332 2222 7888888885 46777775
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC-CcccccccccCCCCCceeee--ecccCCCccccEEEE
Q psy14484 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG-RTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVM 284 (430)
Q Consensus 208 ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g-~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~~~ 284 (430)
++ ++|...+ +++|.++|+++|+++|+||+|+.+. ..+... ...+ ..++.+| +|.+++| ++|+++
T Consensus 137 ~~----~~G~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g--~~g~~~ 203 (418)
T 2c81_A 137 VH----LFGSMAN----MDEINEIAQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG--EGGIIV 203 (418)
T ss_dssp BC----CTTCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS--SCEEEE
T ss_pred eC----CcCCccc----HHHHHHHHHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC--CeEEEE
Confidence 43 4676555 9999999999999999999998654 222211 1111 1344566 8999874 789999
Q ss_pred Ec-HHHHHhhhc---cCCcc---------cccc-c---C----CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy14484 285 TT-DKIYNSIYY---KNNIN---------IFLH-S---H----SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 343 (430)
Q Consensus 285 ~~-~~~~~~~~~---~~~~~---------~~~~-~---~----t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~ 343 (430)
++ +++.+.+.. .+... .+.. . . ....+++..+.+...++.+ ++..++.+++.+++.+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~ 281 (418)
T 2c81_A 204 TKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLND 281 (418)
T ss_dssp ESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 85 677665542 01000 0110 0 0 0012233222222223222 3455666777777777
Q ss_pred HHHchhcCCCeeeE-eecc----e--EEEEEEeecCC-ccchhHHHHHHHHHHHC-CcE---Eeec--------------
Q psy14484 344 ALTSLITHPKIINF-RQKG----M--IWAFDVIIEDP-EQIETFSKKFFVAALKN-ELL---LRPI-------------- 397 (430)
Q Consensus 344 ~l~~l~~~~~~~~~-~~~g----~--~~~~~~~~~~~-~~~~~~a~~~~~~l~~~-Gv~---~~~~-------------- 397 (430)
.|+++ +.+... ...+ . ++.+.+. +.. .... ..++.+.|.++ ||. +.++
T Consensus 282 ~L~~~---~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~ 355 (418)
T 2c81_A 282 ALSKI---DGIKVMKRPPQVSRQTYYGYVFRFD-PVKFGGLN--ADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWT 355 (418)
T ss_dssp HHTTS---TTEEECCCCTTEEECCCSEEEEEEC-GGGTTTCC--HHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGG
T ss_pred HhccC---CCcccCCCCCCCcccccEEEEEEEc-cccccccC--HHHHHHHHHHcCCCCcccccccccccccCchhcccc
Confidence 77654 332221 2222 2 2334444 200 0011 36799999999 999 7642
Q ss_pred -----------------C----------CEEEEeCCCCC-CHHHHHHHHHHHHHHHHHh
Q psy14484 398 -----------------G----------NTVYLMPPYIL-NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 -----------------~----------~~lR~~~~~~~-t~e~i~~~~~~l~~~l~~~ 428 (430)
+ +.+|++++..+ |++|++.++++|++++.++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 356 KNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp CTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 48999999999 9999999999999988753
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-20 Score=183.81 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=183.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...++++.++++++. +..++++||++|++.+++.+.. +++.|++..+.||+.......+.
T Consensus 54 ~~~~~~~~~l~~~la~~~g~--~~~v~~~sGt~A~~~~l~~~~~--------~gd~vi~~~~~~~~~~~~~~~~~----- 118 (421)
T 2ctz_A 54 RIMNPTVDVLEKRLAALEGG--KAALATASGHAAQFLALTTLAQ--------AGDNIVSTPNLYGGTFNQFKVTL----- 118 (421)
T ss_dssp TTBCHHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHCC--------TTCEEEECSCCCHHHHHHHHTHH-----
T ss_pred CCCChHHHHHHHHHHHHhCC--CceEEecCHHHHHHHHHHHHhC--------CCCEEEEeCCCchHHHHHHHHHH-----
Confidence 45667889999999999953 3567778889999999997743 66889999999998644321100
Q ss_pred hhhhhccCCCeeEe-CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYII-TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.....+..++ +.. |+++++++++ +++++|++++ ++|++|.+.+ +++|.++
T Consensus 119 ----~~~g~~~~~~~~~~-----------------d~~~l~~~i~---~~~~~v~~~~-~~n~~G~~~~----l~~i~~~ 169 (421)
T 2ctz_A 119 ----KRLGIEVRFTSREE-----------------RPEEFLALTD---EKTRAWWVES-IGNPALNIPD----LEALAQA 169 (421)
T ss_dssp ----HHTTCEEEECCTTC-----------------CHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHcCCEEEEECCCC-----------------CHHHHHHhhc---cCCeEEEEEC-CCCCCCcccC----HHHHHHH
Confidence 0111223344 322 7889998885 5789999999 9999998877 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCccccEEEEEcH---HH----HHhhhcc--CC--
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTD---KI----YNSIYYK--NN-- 298 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~---~~----~~~~~~~--~~-- 298 (430)
|++||+++|+||+|++++..+..+ +..+|++ +++|.+++...++|++++.+ ++ .+.+... +.
T Consensus 170 a~~~g~~livD~~~~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g 244 (421)
T 2ctz_A 170 AREKGVALIVDNTFGMGGYLLRPL-----AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHG 244 (421)
T ss_dssp HHHHTCEEEEECGGGGGGTSCCGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTT
T ss_pred HHHcCCEEEEECCcccccccCCcc-----ccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhh
Confidence 999999999999995465443322 3357888 67899997336888877741 22 1222210 00
Q ss_pred c--------------ccc--cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeE-----
Q psy14484 299 I--------------NIF--LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF----- 357 (430)
Q Consensus 299 ~--------------~~~--~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~----- 357 (430)
. ..+ ........+++.++++...++.+. ...++..++.+++.+.|++. |.+..+
T Consensus 245 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~---p~v~~v~~p~~ 319 (421)
T 2ctz_A 245 LRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ---PQVAWVNYPGL 319 (421)
T ss_dssp BCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC---TTEEEEECTTS
T ss_pred hhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC---CCeeEEECCCC
Confidence 0 000 011122456666666655555332 22444456777777777654 332222
Q ss_pred --------------eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----------e-----------------
Q psy14484 358 --------------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----------P----------------- 396 (430)
Q Consensus 358 --------------~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----------~----------------- 396 (430)
++.|.++.|++. .+ ...+..+.+.+...++.+. |
T Consensus 320 ~~~~~~~~~~~~~~~~~g~ivsf~l~-~~----~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g 394 (421)
T 2ctz_A 320 PHHPHHDRAQKYFKGKPGAVLTFGLK-GG----YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAG 394 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEET-TH----HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHT
T ss_pred CCCCCHHHHHHhccCCCceEEEEEeC-CC----HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcC
Confidence 467889999987 41 1113455555543332211 1
Q ss_pred -cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 397 -IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 397 -~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
..+.+|++++. ++++++++.|++++
T Consensus 395 ~~~~~vRlS~g~----e~~~~li~~l~~al 420 (421)
T 2ctz_A 395 VSPEMVRLSVGL----EHVEDLKAELKEAL 420 (421)
T ss_dssp CCTTEEEEECCS----SCHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCC----CCHHHHHHHHHHHh
Confidence 02689998775 46777777777664
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=187.70 Aligned_cols=352 Identities=12% Similarity=0.035 Sum_probs=201.4
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH-HhhcCC-----CCCeEEEcCCchHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQY-----KLGHCFYGSDGASAVEV 109 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~-----~~~~v~~~~sgteA~~~ 109 (430)
++||..| ..++.+|.+.+++.+.+.. ..+..+.+..++.+++++.+ .+.... ++++|++|+|+++|+..
T Consensus 106 ~i~l~~g----~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~ 180 (546)
T 2zy4_A 106 SLSYVRD----QLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAY 180 (546)
T ss_dssp HHHHHHH----TSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHH
T ss_pred hhecccC----CCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHH
Confidence 4555444 4467778888888877643 22222234456666766654 333211 34799999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC--CCCCCCCChhHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS--RNINKGNSANEIARCA 187 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d 187 (430)
+++++..... . .+++.|++.+|+|+++......... ....+.++.+.. +.. |
T Consensus 181 ~~~~l~~~~l-~--~~Gd~Vlv~~P~y~~~~~~~~~~~~-----------g~~~~~v~~~~~~~~~~------------d 234 (546)
T 2zy4_A 181 IFESLKLNGL-L--KAGDKVAIGMPVFTPYIEIPELAQY-----------ALEEVAINADPSLNWQY------------P 234 (546)
T ss_dssp HHHHHHHTTS-S--CTTCEEEEEESCCHHHHHHHHSTTS-----------CCEEEEEECBGGGTTBC------------C
T ss_pred HHHHhhhhhc-C--CCCCEEEEeCCCCccHHHHHHHcCC-----------CcEEEEEecCcccCCCC------------C
Confidence 9987521000 0 1567899999999987554322110 011223332211 111 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH--HhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC--NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~--~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
+++|++++. .+++++++.. ++|++| ...+.+.+++|.++| +++|+++|+||+|+++............+....
T Consensus 235 ~~~l~~~~~---~~~k~v~l~~-p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~ 309 (546)
T 2zy4_A 235 DSELDKLKD---PAIKIFFCVN-PSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLL 309 (546)
T ss_dssp HHHHGGGGS---TTEEEEEEES-SCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEE
T ss_pred HHHHHHhhC---CCCeEEEEEC-CCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEE
Confidence 788887663 5678777777 889998 556778899999999 889999999999998754221111111112223
Q ss_pred eeeeecccC-CCccccEEEEEcHH-HHHhhhccC-------------C----c-------------ccccccCCCCCCHH
Q psy14484 266 FLCLSKGIT-GGYLPLSLVMTTDK-IYNSIYYKN-------------N----I-------------NIFLHSHSYSGNPL 313 (430)
Q Consensus 266 ~~~~sK~l~-gG~~~ig~~~~~~~-~~~~~~~~~-------------~----~-------------~~~~~~~t~~~~~~ 313 (430)
+.+|||.++ .| +|+|+++++++ +++.+...- . + +......+.+.+.+
T Consensus 310 ~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~ 388 (546)
T 2zy4_A 310 VYSFSKYFGATG-WRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTP 388 (546)
T ss_dssp EEESTTTTTCGG-GCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHH
T ss_pred EEeCccccCCCC-cceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcH
Confidence 558999997 46 89999999875 666552100 0 0 00001122344555
Q ss_pred HHHHHH--HHHHHHhh-cCHHHHHHHHHHHHHHHH-HchhcCCCeeeEeecc-eEEEEEEeecCC--ccch---------
Q psy14484 314 ACCAAL--ATLEIFNK-DNILQRISQDMKKITKAL-TSLITHPKIINFRQKG-MIWAFDVIIEDP--EQIE--------- 377 (430)
Q Consensus 314 ~~~aa~--~~l~~~~~-~~~~~~~~~~~~~l~~~l-~~l~~~~~~~~~~~~g-~~~~~~~~~~~~--~~~~--------- 377 (430)
.+.++. +....+++ +.+.+.+++.-+.-++.+ +.+. .+. ....+.+ .++++.+. .-. ....
T Consensus 389 ~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~-~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~wl~~~ 465 (546)
T 2zy4_A 389 QQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-MPP-LRDENAVDYYTLIDLQ-DVTAKLYGEAFSEWAVKQ 465 (546)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSC-CCCTTBCCSEEEEEHH-HHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCc-ccCCCCeeEEEEEEHH-HhhcccccHHHHHHhhcc
Confidence 544321 11122322 333333333322222322 2222 221 1123344 44456543 100 0000
Q ss_pred -hHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 378 -TFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 378 -~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.....+.+.+.++||.+.|+ .+++|+++. ..+++++++++++|++++.+.
T Consensus 466 ~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 466 SSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp CCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHHHH
Confidence 01234667778889999985 258999876 568999999999999988754
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-19 Score=172.40 Aligned_cols=318 Identities=13% Similarity=0.098 Sum_probs=201.1
Q ss_pred cCCC--CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 47 LFGH--SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 47 ~lG~--~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
+++. -+|++.+++.+++.... .+..+...++++.+++.++. +++++++||++|++.+++.++.. ..++..
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~~--~~~i~~~sGt~a~~~al~~~~~~-~~~~~~ 78 (390)
T 3b8x_A 7 PLASSTWDDLEYKAIQSVLDSKM-----FTMGEYVKQYETQFAKTFGS--KYAVMVSSGSTANLLMIAALFFT-KKPRLK 78 (390)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTC-----CSSCHHHHHHHHHHHHHHTC--SEEEEESCHHHHHHHHHHHTTSS-SSCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHcCC-----CCCChHHHHHHHHHHHHHCC--CcEEEECCHHHHHHHHHHHHHhh-hhcCCC
Confidence 4443 36899999999887632 34467788999999999953 48899999999999999887310 001112
Q ss_pred CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 125 NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 125 ~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++.|++..++||+........+ .+..+++.+.. +.. |+++|+++++ ++++
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~------------d~~~l~~~i~---~~~~ 130 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYG-------------LRVKFVDIDINTLNI------------DIESLKEAVT---DSTK 130 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTT-------------CEEEEECBCTTTCSB------------CHHHHHHHCC---TTEE
T ss_pred CcCEEEECCCCcHHHHHHHHHcC-------------CEEEEEecCccccCc------------CHHHHHHHhC---cCCe
Confidence 56789999999988754433211 12234443321 222 7899999885 4677
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCc--cccE
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY--LPLS 281 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~--~~ig 281 (430)
+|++.+ +.|...+ +++|.++|+++|+++|+||+|+ ++... ....++..+|+.++||..+.++ ...|
T Consensus 131 ~v~~~~----~~g~~~~----~~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~g~~~~~~~~s~~~~k~~~~g~gG 198 (390)
T 3b8x_A 131 AILTVN----LLGNPNN----FDEINKIIGGRDIILLEDNCES-MGATF---NNKCAGTFGLMGTFSSFYSNHIATMEGG 198 (390)
T ss_dssp EEEEEC----GGGCCCC----HHHHHHHHTTSCCEEEEECTTC-TTCEE---TTEETTSSSSEEEEECCTTSSSCSSSCE
T ss_pred EEEEEC----CccChhh----HHHHHHHHHHcCCEEEEECcCc-ccCEE---CCcccccccceEEEEccCCCCCccCCce
Confidence 777633 2243444 9999999999999999999998 22211 1234566789999886433210 1347
Q ss_pred EEEEcH-HHHHhhhc---cCCccc-------------------cc---ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHH
Q psy14484 282 LVMTTD-KIYNSIYY---KNNINI-------------------FL---HSHSYSGNPLACCAALATLEIFNKDNILQRIS 335 (430)
Q Consensus 282 ~~~~~~-~~~~~~~~---~~~~~~-------------------~~---~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~ 335 (430)
++++++ ++.+.+.. .+..+. +. .+.++..+++.++++.+.|+.++ +..++.+
T Consensus 199 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~ 276 (390)
T 3b8x_A 199 CIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRR 276 (390)
T ss_dssp EEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHH
Confidence 788775 55543322 110000 00 12233366777777777776553 5677788
Q ss_pred HHHHHHHHHHHchhcCCCeeeEe--ecceE--EEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------C------
Q psy14484 336 QDMKKITKALTSLITHPKIINFR--QKGMI--WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------G------ 398 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~--~~g~~--~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~------ 398 (430)
++.+++.+.|+++ +.+.-.. ....+ +.+.+. .... .. ...+.+.|.++||.+.+. .
T Consensus 277 ~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~i~~~-~~~~-~~--~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~ 349 (390)
T 3b8x_A 277 KNAEYFLDKFKDH---PYLDVQQETGESSWFGFSFIIK-KDSG-VI--RKQLVENLNSAGIECRPIVTGNFLKNTDVLKY 349 (390)
T ss_dssp HHHHHHHHHHTTC---SSEEECCCCSBCCCCEEEEEEC-TTSC-CC--HHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTT
T ss_pred HHHHHHHHHhcCC---CCcccCCCCCCcccEEEEEEec-CcCc-cc--HHHHHHHHHHCCCCeeeecCCchhhcchhhhc
Confidence 8888888888764 2221111 12333 333443 2100 11 367889999999987641 1
Q ss_pred -----------------CEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 399 -----------------NTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 399 -----------------~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
+.+|++++..+|++|++.+++.|
T Consensus 350 ~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 350 FDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 25899999999999999999876
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=173.98 Aligned_cols=349 Identities=10% Similarity=-0.003 Sum_probs=205.0
Q ss_pred CCCEEEecccccccccCCCCC--HHHHHHHHHHHhhc-cc-cccCCCCCHHHHHHHHHHHhhcCCCCC--eEEEcCCchH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSN--SYINKALKNQLNKL-EH-VMLSNLTHKPVIKLSEKLSSLTQYKLG--HCFYGSDGAS 105 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~-~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~--~v~~~~sgte 105 (430)
|++..+|+.-|..-..-|..+ |.|++|.+..++.. .+ +....+..++.+.+++.+.... ...+ ...-|.|||.
T Consensus 42 d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~-~~~~~~~~~qt~ggtg 120 (420)
T 4h51_A 42 AKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNT-VELENLVAVQTLSGTG 120 (420)
T ss_dssp CCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC----CGGGEEEEEEEHHHH
T ss_pred CCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCC-ccccccceeeecCchH
Confidence 333457766654444555433 77888877666543 22 2222333344455555443221 1222 3455889999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-C-CCCCCCCCCChhHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-P-DSRNINKGNSANEI 183 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 183 (430)
|...++.++..... .+++.|++.+|+|..+.......+..+. ...++ + ....
T Consensus 121 a~~~a~~~l~~~~~----~pgd~V~ip~P~w~~y~~i~~~aG~~~V------------~~~~~~~~~~~~---------- 174 (420)
T 4h51_A 121 AVSLGAKLLTRVFD----AETTPIYLSDPTWPNHYGVVKAAGWKNI------------CTYAYYDPKTVS---------- 174 (420)
T ss_dssp HHHHHHHHHTTTSC----TTTSCEEEEESCCTHHHHHHHHTTCCCE------------EEEECEEGGGTE----------
T ss_pred HHHHHHHHHHHhcC----CCCCEEEEecCCchhHHHHHHHcCCeEE------------EeeccccccccC----------
Confidence 99998887765321 1567899999999877554444333211 11111 1 1011
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc---cccc-cc
Q psy14484 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK---FFAC-EH 259 (430)
Q Consensus 184 ~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~---~~~~-~~ 259 (430)
.|.+.+.+.+...++++.+++..+ .+|++| ..++.+.+++|.++|+++++++|.||+|.+|...+. .+.. ..
T Consensus 175 --~d~~~~~~~l~~~~~~~~vll~~~-p~NPtG-~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~ 250 (420)
T 4h51_A 175 --LNFEGMKKDILAAPDGSVFILHQC-AHNPTG-VDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLF 250 (420)
T ss_dssp --ECHHHHHHHHHHSCSSCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH
T ss_pred --CCHHHHHHHHhccCCCcEEEEeCC-CCCCCC-CCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhH
Confidence 166777777777667778888888 899999 778999999999999999999999999999865332 1111 11
Q ss_pred CCCCCc---eeeeecccCC-CccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHH--H----h--
Q psy14484 260 AEIWPD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEI--F----N-- 326 (430)
Q Consensus 260 ~~~~~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~--~----~-- 326 (430)
.+..+. +-+|||.++- | +|+|++.+..+..+....- ............+++..++.++...|.. + +
T Consensus 251 ~~~~~~~i~~~s~SK~~~~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~ 329 (420)
T 4h51_A 251 ARRGIEVLLAQSFSKNMGLYS-ERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAE 329 (420)
T ss_dssp HHTTCCCEEEEECTTTSCCGG-GCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HhhCceEEEEecccccccccc-CceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHH
Confidence 111222 3379998765 5 8999998865433321110 0000011223333444555555444431 1 1
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCC-eee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEe
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPK-IIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLM 404 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~ 404 (430)
.+...++++++++.+.+.|+++ ..+. +.. .+..|+|.+..+. .+.++.|.++||++.+++ ||+
T Consensus 330 ~~~m~~r~~~~R~~l~~~L~~~-g~~~~~~~i~~q~GmF~~~gls-----------~e~v~~L~e~~Vy~~~~g---Ris 394 (420)
T 4h51_A 330 LSAMAERIRTMRRTVYDELLRL-QTPGSWEHVINQIGMFSFLGLS-----------KAQCEYCQNHNIFITVSG---RAN 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCSSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHTTEECCTTC---EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCCCCeecCCCceEEecCcC-----------HHHHHHHHhCCEEEcCCC---EEE
Confidence 1234455666677777777665 2222 222 2345665443332 234567889999888765 887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++ ..++++|+.+.++|.++++++
T Consensus 395 ~A-gl~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 395 MA-GLTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp GG-GCCHHHHHHHHHHHHHHHC--
T ss_pred ec-cCCHHHHHHHHHHHHHHHHHh
Confidence 65 578999999999999998765
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-19 Score=176.68 Aligned_cols=333 Identities=9% Similarity=0.004 Sum_probs=202.0
Q ss_pred CCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcCCC--CCe---EEEcCCchHHHHHHHHHHHHhhhh----
Q psy14484 51 SNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYK--LGH---CFYGSDGASAVEVALKMSFHYWYN---- 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~--~~~---v~~~~sgteA~~~al~~~~~~~~~---- 120 (430)
.+|.+.+++.+.+...... .......+...+++++++++++.. +++ ..+++||++|+..++.+++.....
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 5789999988876542211 111112345567888899998765 333 346999999999998877653221
Q ss_pred cCCC-CCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 121 KGFL-NKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 121 ~g~~-~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
.|.+ .++.|++.++++. ......... ..+...++.+.. +.. |+++|+++++
T Consensus 148 ~G~~~~~~~vi~~~~~h~-s~~~~~~~~------------G~~~~~v~~~~~~~~~------------d~~~l~~~i~-- 200 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANVQV-CWEKFARYF------------EVELKEVKLSEGYYVM------------DPQQAVDMVD-- 200 (502)
T ss_dssp TTCCCSCCEEEEETTCCH-HHHHHHHHT------------TCEEEEECCBTTBCSC------------CHHHHHHHCC--
T ss_pred cCCCCCCcEEEEcCCchH-HHHHHHHHc------------CceeEEEecCCCcCcC------------CHHHHHHHHh--
Confidence 1322 2236666555543 322222211 223455554432 222 8899999886
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc------CCEEEEeccccCCCC---ccc-ccccccCCCCCceee
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY------NIHLIADEIAVGCGR---TGK-FFACEHAEIWPDFLC 268 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~------gi~li~DEv~~g~g~---~g~-~~~~~~~~~~~d~~~ 268 (430)
+++.+|++.. +++++|.+.+ +++|.++|+++ |+++|+|++|.++.. .+. .+.+. ....|.++
T Consensus 201 -~~t~~v~~~~-~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~--~~~~D~v~ 272 (502)
T 3hbx_A 201 -ENTICVAAIL-GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFR--LPLVKSIN 272 (502)
T ss_dssp -TTEEEEEEEB-SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTT--STTEEEEE
T ss_pred -hCCEEEEEec-CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccC--CCCceEEE
Confidence 4678888877 8888898887 99999999999 999999999986531 111 11111 11356665
Q ss_pred ee--cccCCCccccEEEEEcH-HHH-Hhhhcc-----CCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHH
Q psy14484 269 LS--KGITGGYLPLSLVMTTD-KIY-NSIYYK-----NNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQ 336 (430)
Q Consensus 269 ~s--K~l~gG~~~ig~~~~~~-~~~-~~~~~~-----~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~ 336 (430)
++ |.+.++ .++|+++.+. +.. +.+... +....+ ...++.......+..++++.+.. .+..++..+
T Consensus 273 ~s~hK~l~~p-~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~--~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~ 349 (502)
T 3hbx_A 273 VSGHKYGLVY-AGIGWVIWRNKEDLPEELIFHINYLGADQPTF--TLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRE 349 (502)
T ss_dssp EETTTTTCCC-SSCEEEEESSGGGSCGGGCEEECSSSSCEEEC--CSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECcccccCCC-CCeEEEEEeCHHHhhHHhccCcccccCCCCCc--cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 766555 5789888764 333 222110 000000 00111122233344445554433 344566677
Q ss_pred HHHHHHHHHHchhcCCCeeeEe--ecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------CCEEEEeCC
Q psy14484 337 DMKKITKALTSLITHPKIINFR--QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------GNTVYLMPP 406 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------~~~lR~~~~ 406 (430)
+++++.+.|+++ +.+..+. ....++.|.+. .+.... ...+.+.|.++|+++... ...+||++.
T Consensus 350 ~a~~l~~~L~~~---~~~~~~~~~~~~~~v~f~~~-~~~~~~---~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~ 422 (502)
T 3hbx_A 350 NMIVLREGLEKT---ERFNIVSKDEGVPLVAFSLK-DSSCHT---EFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIR 422 (502)
T ss_dssp HHHHHHHHHHTT---TCEEECSCSSSSSEEEEEES-SCSSCC---HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECC
T ss_pred HHHHHHHHHHhC---CCEEEEeCCCCceEEEEEec-CCCcCC---HHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeC
Confidence 788888888765 3222221 34567777776 422111 247999999999986432 147999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..+|+++++.+++.|++++.++
T Consensus 423 ~~~t~edid~li~~L~~~l~~l 444 (502)
T 3hbx_A 423 EDFSRTLAERLVIDIEKVMREL 444 (502)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-19 Score=176.46 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCch-HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgt-eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
+..++++++++++++.+.+ ++|++||| .++..++..++... +++.||+.++ .|..........
T Consensus 133 ~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~-~h~s~~~~~~~~-------- 196 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKY------GSNVVIYPYA-SHKSPIKAVSFV-------- 196 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECC-CCHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECC-CcHHHHHHHHHc--------
Confidence 4556788999999976655 99999999 46666777665421 3455666666 444432222211
Q ss_pred hhccCCCeeEeCC---CCCCCCCCCCChhHHHHHHHHHHHHHH-HhC-CCCeEEEEEccccccCCCcccCChHHHHHHHH
Q psy14484 156 YTSLLNKTYIITT---PDSRNINKGNSANEIARCAIFDLEILL-KKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230 (430)
Q Consensus 156 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~ 230 (430)
..+...++. +..+.. |+++|++++ +.. ..++.+|++.. .++++|.+.+ +++|.+
T Consensus 197 ----G~~~~~v~~~~~~~~~~~------------d~~~l~~~i~~~~~~~~~~~vv~~~-~nn~tG~i~~----l~~I~~ 255 (456)
T 2z67_A 197 ----GMNMRLVETVLDGDRVYV------------PVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDD----IVEIAK 255 (456)
T ss_dssp ----TCEEEEECCEEETTEEEC------------CHHHHHHHHHHHHHTTCCEEEEEES-SCCTTBCCCC----HHHHHH
T ss_pred ----CCCceEEEEeccCCCCCc------------CHHHHHHHHHHHhhCCCeEEEEEeC-CCCCCCCcCC----HHHHHH
Confidence 122233333 222222 889999999 421 13567776666 7778898887 999999
Q ss_pred HHHhcCCEEEEeccccCCCCccc-cccccc-CCCCCceeee--ecccCCCccccEEEEE-cHHHHHhhhccCCccccccc
Q psy14484 231 ICNNYNIHLIADEIAVGCGRTGK-FFACEH-AEIWPDFLCL--SKGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHS 305 (430)
Q Consensus 231 l~~~~gi~li~DEv~~g~g~~g~-~~~~~~-~~~~~d~~~~--sK~l~gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~ 305 (430)
+|+++|+++|+||+|.++.. |. ...... .+ .+|++++ +|.++++ .++|++++ ++++.+.+.+ ...+
T Consensus 256 la~~~g~~v~vD~A~~~~~~-g~~~~~~~~~~~-~~D~~~~s~hK~~~~p-~g~G~l~~~~~~~~~~l~~------~~~g 326 (456)
T 2z67_A 256 ICENYDIPHIINGAYAIQNN-YYLEKLKKAFKY-RVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL------SYPG 326 (456)
T ss_dssp HHHHHTCCEEEECTTTTTCH-HHHHHHHHHHTS-CCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT------TSCS
T ss_pred HHHHcCCcEEEECcchHHHH-HhhHHHHHhhCC-CCCEEEEcCCCCcCCC-CCeEEEEEcCHHHHhhcCc------CCCC
Confidence 99999999999999875532 21 111111 12 5787766 5876666 68999999 4677766643 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchh---cCCCeeeEeecceEEEEEEeecCCccchhH
Q psy14484 306 HSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLI---THPKIINFRQKGMIWAFDVIIEDPEQIETF 379 (430)
Q Consensus 306 ~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 379 (430)
...+++ ..+..+++..+.. ++..++..++.+++.+.|+++. ..... .+. .++.+.+. .+. .
T Consensus 327 -~~~~~~--~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~---~~~-~~v~~~~~-~~~--~--- 393 (456)
T 2z67_A 327 -RASATP--VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFL---DVE-SPIASCIS-VNS--D--- 393 (456)
T ss_dssp -CBCSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBC---CCC-CSSEEEEE-CSS--C---
T ss_pred -CCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEec---CCC-CeEEEEEe-ccc--H---
Confidence 112222 2233333433322 3456778888899999998763 32221 122 45555553 211 1
Q ss_pred HHHHHHHHHHCCc---EEe------------e-cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 380 SKKFFVAALKNEL---LLR------------P-IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 380 a~~~~~~l~~~Gv---~~~------------~-~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
...+.+.|.++|+ .+. . ..+++|++++..+|++++++++++|++++
T Consensus 394 ~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 394 PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2468888988875 333 1 13689999999999999999999998754
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=181.47 Aligned_cols=288 Identities=10% Similarity=0.041 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
.+.....++++.+++ ++.+ +.+++++|+++|+..++++++. +++.|++..++|++........+.
T Consensus 54 ~~~~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~--------~gd~Vlv~~~~h~s~~~~~~~~G~----- 118 (446)
T 2x3l_A 54 HPEEVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQ--------KKGDILMARNVHKSVLHALDISQQ----- 118 (446)
T ss_dssp SCSSHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTT--------SSSCEEECTTCCHHHHHHHHHHTC-----
T ss_pred CcchHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcC--------CCCEEEEecCccHHHHHHHHHcCC-----
Confidence 345567889999999 8754 6789999999999999998754 678899988888766443332221
Q ss_pred hhhhccCCCeeEeCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITT--PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
..++++. +..+.... ..|+++| +. ++++++++++ .++ +|.+.+ +++|.++
T Consensus 119 --------~~~~v~~~~~~~~~~~~--------~~d~~~l---~~---~~~~~v~~~~-~n~-~G~~~~----l~~I~~l 170 (446)
T 2x3l_A 119 --------EGHFIETHQSPLTNHYN--------KVNLSRL---NN---DGHKLVVLTY-PNY-YGETFN----VEEVIKS 170 (446)
T ss_dssp --------CEEECEEEECTTTSSEE--------EEEC-------------CCEEEEES-SCT-TSCCCC----HHHHHHH
T ss_pred --------eEEEEeCeeccccCcCC--------CCCHHHH---cC---CCceEEEEEC-CCC-CeEecC----HHHHHHH
Confidence 1122222 11100000 0144555 22 3566677666 544 787776 9999999
Q ss_pred HHhcCCEEEEeccccC-CCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHH--hhhccCCcccccccC
Q psy14484 232 CNNYNIHLIADEIAVG-CGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYN--SIYYKNNINIFLHSH 306 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g-~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~--~~~~~~~~~~~~~~~ 306 (430)
|++||+++|+||+|++ +...+.. .......+|+++.| |.++++ .++|++++++++++ .+.. ......
T Consensus 171 ~~~~~~~livDea~~~~~~f~~~~--~~~~~~g~Di~~~S~~K~l~~~-~g~g~l~~~~~~i~~~~~~~-----~~~~~~ 242 (446)
T 2x3l_A 171 LHQLNIPVLIDEAHGAHFGLQGFP--DSTLNYQADYVVQSFHKTLPAL-TMGSVLYIHKNAPYRENIIE-----YLSYFQ 242 (446)
T ss_dssp HHHTTCCEEEECTTCTTTTSTTSC--CCGGGGTCSEEEECHHHHSSSC-TTCEEEEEETTCTTHHHHHH-----HHHHHS
T ss_pred HHhcCCeEEEcchhhhhhccCCCC--CChHHcCCCEEEECCccccccc-cccEEEEEcCCcCCHHHHHH-----HHHHHc
Confidence 9999999999999985 2222221 12222346888766 988776 57899999887644 2221 011122
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHH
Q psy14484 307 SYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKF 383 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~ 383 (430)
+.+.+...+++..++++.++... +.++.+++.+++++. .+ ..+. ...+..+++.+. . . . +.++
T Consensus 243 ~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g~---~~~~--~~~~~~l~i~~~-~-~--~---~~~l 308 (446)
T 2x3l_A 243 TSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--GF---EMLQ--VDDPLKLLIKYE-G-F--T---GHDI 308 (446)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--TC---EEEE--CSSTTEEEEECT-T-S--C---HHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--CC---EECc--CCCCeEEEEEeC-C-c--C---HHHH
Confidence 33446665555555666665422 566677777776665 11 1111 112334445443 1 1 1 3578
Q ss_pred HHHHHHCCcEEe-ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 384 FVAALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 384 ~~~l~~~Gv~~~-~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+.|.++||.+. ++.+.+|++++..+|++++ +++++|++++++
T Consensus 309 ~~~L~~~GI~v~~~g~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 309 QNWFMNAHIYLELADDYQALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp HHHHHHTTEEESEECSSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred HHHHHHCCCEEEecCCCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 899999999998 5558899999999999999 999999988753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=172.18 Aligned_cols=318 Identities=11% Similarity=0.057 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhhcCCC--CCeEEEcCCchHHHHHHHHHHHHhh----hhcCCC--CCcEEEEEcCCCCCcchhhhccCC
Q psy14484 77 KPVIKLSEKLSSLTQYK--LGHCFYGSDGASAVEVALKMSFHYW----YNKGFL--NKKKFICLQNSYHGETLGALAVTN 148 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~--~~~v~~~~sgteA~~~al~~~~~~~----~~~g~~--~~~~vl~~~~~yhg~~~~~~~~~~ 148 (430)
....+++++++++++.. .+.++|++|||+|+..|+.+++... ...|.+ ++..|++ +...|.+...+....+
T Consensus 135 ~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~-s~~~H~s~~~~~~~~g 213 (511)
T 3vp6_A 135 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFT-SEQSHYSIKKAGAALG 213 (511)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEE-ETTSCTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEE-CCCchHHHHHHHHHcC
Confidence 45566777888888755 4589999999999999999887632 122311 2334444 4445544333332222
Q ss_pred CccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHH
Q psy14484 149 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYL 225 (430)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l 225 (430)
.. ......++.+..++. |+++|+++|++. +..+++|+++. +++++|.+.+ +
T Consensus 214 ~g---------~~~~~~v~~d~~~~~------------d~~~Le~~i~~~~~~g~~~~~vv~~~-~~~~~G~vd~----l 267 (511)
T 3vp6_A 214 FG---------TDNVILIKCNERGKI------------IPADFEAKILEAKQKGYVPFYVNATA-GTTVYGAFDP----I 267 (511)
T ss_dssp SC---------GGGEEEECBCTTSCB------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SCSSSCCBCC----H
T ss_pred CC---------CCcEEEeecCCCCcc------------CHHHHHHHHHHHHhcCCCcEEEEEec-CCCCCccccc----H
Confidence 10 002345554443333 899999999753 12378888888 8999998877 9
Q ss_pred HHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH-HHHhhhccCCccc
Q psy14484 226 KLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK-IYNSIYYKNNINI 301 (430)
Q Consensus 226 ~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~-~~~~~~~~~~~~~ 301 (430)
++|.++|++||+++|+|++|.+.......+.....++ ..|.++++ |.+++. ..+|+++++.+ +....... ....
T Consensus 268 ~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~~~-~~~y 345 (511)
T 3vp6_A 268 QEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCNQM-HASY 345 (511)
T ss_dssp HHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHHCC-CCTT
T ss_pred HHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHhcc-CCcc
Confidence 9999999999999999999985422111111112233 35777654 887765 46788888653 44332210 0000
Q ss_pred ccc----------------cCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecce
Q psy14484 302 FLH----------------SHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGM 362 (430)
Q Consensus 302 ~~~----------------~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~ 362 (430)
+.. ..+.....+. ..++++.+.. ++..++..++++++.+.|+++.++..+....+...
T Consensus 346 l~~~~~~~~~~~~~~~~~~~~~r~~~al~---~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~ 422 (511)
T 3vp6_A 346 LFQQDKHYDVSYDTGDKAIQCGRHVDIFK---FWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHT 422 (511)
T ss_dssp TCCSSCSSCGGGCCGGGSSCSSCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSS
T ss_pred ccCcccccccccCccCCCCCCCCchHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeE
Confidence 000 0011122333 3344443332 45567778888888888876522211111023445
Q ss_pred EEEEEEeecCCc----cc-------hhHHHHHHHHHHHCCcEEee----cC--CEEEEeC-CCCCCHHHHHHHHHHHHHH
Q psy14484 363 IWAFDVIIEDPE----QI-------ETFSKKFFVAALKNELLLRP----IG--NTVYLMP-PYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 363 ~~~~~~~~~~~~----~~-------~~~a~~~~~~l~~~Gv~~~~----~~--~~lR~~~-~~~~t~e~i~~~~~~l~~~ 424 (430)
++.|.+. +... .. .....++.+.|.++|+++.. .+ +.+|+++ +..+++++|+.+++.|++.
T Consensus 423 ~v~f~~~-p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~ 501 (511)
T 3vp6_A 423 NVCFWYI-PQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 501 (511)
T ss_dssp CEEEEEC-CGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEe-CccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 5566553 2110 00 01134688899999965432 12 3699998 7889999999999999887
Q ss_pred HHH
Q psy14484 425 FNE 427 (430)
Q Consensus 425 l~~ 427 (430)
-++
T Consensus 502 ~~~ 504 (511)
T 3vp6_A 502 GQD 504 (511)
T ss_dssp HC-
T ss_pred HHh
Confidence 544
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-18 Score=167.97 Aligned_cols=313 Identities=10% Similarity=0.008 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHhhcCCCC----------CeEEEcCCchHHHHHHHHHHHHhhhhc----CC-------CCCcEEEEEcCC
Q psy14484 77 KPVIKLSEKLSSLTQYKL----------GHCFYGSDGASAVEVALKMSFHYWYNK----GF-------LNKKKFICLQNS 135 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~----------~~v~~~~sgteA~~~al~~~~~~~~~~----g~-------~~~~~vl~~~~~ 135 (430)
+...++.++++++++.+. ...+|++|||+||..|+.+++.....+ |. .++. +|+.+..
T Consensus 118 ~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~-~v~~s~~ 196 (481)
T 4e1o_A 118 ELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL-VAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE-EEEEETT
T ss_pred HHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe-EEEEcCc
Confidence 455667778888876432 267999999999999999988643211 10 0233 4444555
Q ss_pred CCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccc
Q psy14484 136 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQ 212 (430)
Q Consensus 136 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~ 212 (430)
.|.+...+....+ ...+.++.+..++. |+++|+++|++. ...+.+|++.. ++
T Consensus 197 ~H~s~~~~~~~~g------------~~~~~v~~~~~~~~------------d~~~Le~~i~~~~~~g~~~~~vv~~~-~~ 251 (481)
T 4e1o_A 197 AHSSVEKAGLISL------------VKMKFLPVDDNFSL------------RGEALQKAIEEDKQRGLVPVFVCATL-GT 251 (481)
T ss_dssp SCHHHHHHHHHHT------------CEEEEECCCTTSCC------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SC
T ss_pred chHHHHHHHHhCC------------CceEEEEcCCCCcC------------CHHHHHHHHHHHHhCCCCcEEEEEec-CC
Confidence 5554333222222 23355555443333 899999999753 11266677777 77
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH-
Q psy14484 213 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK- 288 (430)
Q Consensus 213 ~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~- 288 (430)
+++|.+.| +++|.++|++||+++|+|++|.+.......+.....++ ..|.++++ |.++.. ..+|+++++++
T Consensus 252 t~~G~id~----l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~~~~~ 326 (481)
T 4e1o_A 252 TGVCAFDC----LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFWVKDKY 326 (481)
T ss_dssp TTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESBHH
T ss_pred CCCcCcCC----HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCC-CceEEEEEeCHH
Confidence 88898877 99999999999999999999985422222111111233 35777764 888765 46788888754
Q ss_pred HHH-hhhccCCccccc--------------ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCC
Q psy14484 289 IYN-SIYYKNNINIFL--------------HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPK 353 (430)
Q Consensus 289 ~~~-~~~~~~~~~~~~--------------~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 353 (430)
+.. .+.. ....+. ...+.....+.+.+++..+..-.-++..++..++++++.+.|+++..+..
T Consensus 327 ~l~~~~~~--~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~ 404 (481)
T 4e1o_A 327 KLQQTFSV--NPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEI 404 (481)
T ss_dssp HHHTTTCC--CCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEC
T ss_pred HHHHHhcC--CchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 322 2211 000000 00111112333333333332111134566777888888888876532222
Q ss_pred eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCc-EEeec---C-CEEEEeCC-CCCCHHHHHHHHHHHHHHHHH
Q psy14484 354 IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL-LLRPI---G-NTVYLMPP-YILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv-~~~~~---~-~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+ .+....++.+.+. .. .....++.++|.++|+ ++.+. + ..+|+++. ..+|+++|++++++|++++++
T Consensus 405 ~--~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 405 P--AKRHLGLVVFRLK-GP----NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp C--SCCCSSEEEEEES-SC----HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred e--cCCceeEEEEEeC-Cc----hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 1234456666665 31 2234678999998884 44442 2 57899866 445899999999999999988
Q ss_pred hh
Q psy14484 428 VI 429 (430)
Q Consensus 428 ~~ 429 (430)
++
T Consensus 478 l~ 479 (481)
T 4e1o_A 478 IL 479 (481)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-19 Score=172.10 Aligned_cols=291 Identities=11% Similarity=0.063 Sum_probs=184.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
..+..+..+++++.++++.+ .+.+++++||++|+..+++.+.. +++.||+.++.|++........
T Consensus 77 ~r~~~p~~~~le~~lA~l~g--~~~~i~~ssGt~Ai~~al~~l~~--------~Gd~Vi~~~~~y~~~~~~~~~~----- 141 (415)
T 2fq6_A 77 GRRGTLTHFSLQQAMCELEG--GAGCVLFPCGAAAVANSILAFIE--------QGDHVLMTNTAYEPSQDFCSKI----- 141 (415)
T ss_dssp TTTCCHHHHHHHHHHHHHHT--CSEEEEESSHHHHHHHHHHTTCC--------TTCEEEEETTSCHHHHHHHHHT-----
T ss_pred cCCCCchHHHHHHHHHHHhC--CCeEEEeCCHHHHHHHHHHHHhC--------CCCEEEEeCCCchHHHHHHHHH-----
Confidence 35677888999999999985 35677889999999999886543 5678999999888653221110
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
......++.+++.. |+++|+++++ +++++|+++. ++|++|.+.+ +++|.++
T Consensus 142 ----l~~~G~~v~~v~~~-----------------d~~~le~ai~---~~tklV~~e~-~~NptG~v~d----l~~I~~l 192 (415)
T 2fq6_A 142 ----LSKLGVTTSWFDPL-----------------IGADIVKHLQ---PNTKIVFLES-PGSITMEVHD----VPAIVAA 192 (415)
T ss_dssp ----GGGGTCEEEEECTT-----------------CGGGGGGGCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred ----HHHcCcEEEEECCC-----------------CHHHHHHhhc---cCCcEEEEEC-CCCCCCEeec----HHHHHHH
Confidence 11112233444332 6788888885 4689999999 9999998887 9999999
Q ss_pred HHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCc-cccEEEEEcHHHHHhhhccCCcccccccC
Q psy14484 232 CNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LPLSLVMTTDKIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 232 ~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~-~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (430)
|++ +|+++|+|++|+.. ...... ....|++ +++|.++++. ..+|++++++++++.+... ....+
T Consensus 193 a~~~~~g~~livD~a~a~~-~~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~-----~~~~G 261 (415)
T 2fq6_A 193 VRSVVPDAIIMIDNTWAAG-VLFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN-----AYLMG 261 (415)
T ss_dssp HHHHCTTCEEEEECTTTTT-TSSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH-----HHHTT
T ss_pred HHhhcCCCEEEEECCCccc-ccCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHH-----HHhcC
Confidence 999 99999999998732 111111 2346777 5679998742 2368999988877766540 01111
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCeee----------EeecceEEEEEEeec
Q psy14484 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKIIN----------FRQKGMIWAFDVIIE 371 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~~----------~~~~g~~~~~~~~~~ 371 (430)
+ ..++..+..+...++.+. ...++..++...+.+.|++... +|.+.. ..+.|.++.|.+. .
T Consensus 262 ~-~~~~~~a~~~~~~l~~l~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~-g 337 (415)
T 2fq6_A 262 Q-MVDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK-K 337 (415)
T ss_dssp C-CCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-S
T ss_pred C-CCCHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC-C
Confidence 1 234554444444555332 2344455566667676655311 222110 1246788888887 4
Q ss_pred CCccchhHHHHHHHHHHHCCc----------EEe--e--------------cCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 372 DPEQIETFSKKFFVAALKNEL----------LLR--P--------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 372 ~~~~~~~~a~~~~~~l~~~Gv----------~~~--~--------------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
... ...+..+.+.+.-.++ ... | .++.+|++++...++++|+.+.++|++
T Consensus 338 ~~~--~~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 338 KLN--NEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CCC--HHHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCC--HHHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 200 1113445554432221 111 1 136899999999999999998888864
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=171.19 Aligned_cols=313 Identities=12% Similarity=0.054 Sum_probs=192.3
Q ss_pred CCHHHHHHHHHHHhhcc---cc---ccC--CCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCc-hHHHHHHHHHHHHhhhh
Q psy14484 51 SNSYINKALKNQLNKLE---HV---MLS--NLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDG-ASAVEVALKMSFHYWYN 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~---~~---~~~--~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sg-teA~~~al~~~~~~~~~ 120 (430)
.+|.|++++.+.+.... .. ... ....+..+++++++++.++.. ++++++++|+ ++|+..++..+...
T Consensus 14 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~--- 90 (360)
T 1w23_A 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTK--- 90 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCT---
T ss_pred CCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCC---
Confidence 57999999998875421 00 000 111235678999999999764 4589999998 99999998876531
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHH-HHHhC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEI-LLKKN 198 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~-~l~~~ 198 (430)
|+ +.+.|+....+|+ . ..... ... ..+.++.+. +.. .|+++|++ +++
T Consensus 91 -~~-~g~~vi~~~~~~~-~-~~~~~------------~~g-~~~~v~~~~~~~~------------~d~~~l~~~~i~-- 139 (360)
T 1w23_A 91 -GT-IGNYVLTGSWSEK-A-LKEAK------------LLG-ETHIAASTKANSY------------QSIPDFSEFQLN-- 139 (360)
T ss_dssp -TC-EEEEEECSHHHHH-H-HHHHH------------TTS-EEEEEEECGGGTS------------CSCCCGGGCCCC--
T ss_pred -CC-cccEEEecchhHH-H-HHHHH------------HhC-CeEEeecccccCc------------CCccchHhhccC--
Confidence 10 1223333222221 1 11111 112 223343321 111 15566666 553
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--eecccCCC
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--LSKGITGG 276 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~sK~l~gG 276 (430)
+++++|++++ ++|++|.+.+ +++++||+++|+||+|+.+... ..... . |+++ ++|.++..
T Consensus 140 -~~~k~v~~~~-~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~~---~~~~~--~--di~~~s~sK~~~~~ 201 (360)
T 1w23_A 140 -ENDAYLHITS-NNTIYGTQYQ---------NFPEINHAPLIADMSSDILSRP---LKVNQ--F--GMIYAGAQKNLGPS 201 (360)
T ss_dssp -TTEEEEEEES-EETTTTEECS---------SCCCCCSSCEEEECTTTTTSSC---CCGGG--C--SEEEEETTTTTSCT
T ss_pred -CCCCEEEEeC-CCCCcceecc---------cccccCCceEEEechhhcCCCC---cCccc--C--CEEEEEcccccCCC
Confidence 5788999888 9999997654 2334899999999999844321 11221 2 6665 55988742
Q ss_pred ccccEEEEEcHHHHHhhhccCCccccc-------ccCCC-CCCHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHH
Q psy14484 277 YLPLSLVMTTDKIYNSIYYKNNINIFL-------HSHSY-SGNPLACCAALATLEIFNK----DNILQRISQDMKKITKA 344 (430)
Q Consensus 277 ~~~ig~~~~~~~~~~~~~~~~~~~~~~-------~~~t~-~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~~~ 344 (430)
++|++++++++++.+... . .... ...++ +.+..++.++.++++.+.+ +...++++++.+++.+.
T Consensus 202 --G~G~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (360)
T 1w23_A 202 --GVTVVIVKKDLLNTKVEQ-V-PTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDT 277 (360)
T ss_dssp --TCEEEEEEHHHHCSCCTT-C-CGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --CcEEEEEcHHHHhhcccC-C-cchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 489999999887665431 0 0000 11222 3355666666677776543 23566777788888888
Q ss_pred HHchhcCCCeeeE--e-ec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHH
Q psy14484 345 LTSLITHPKIINF--R-QK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 345 l~~l~~~~~~~~~--~-~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~ 417 (430)
|+++.. ..... + .. +.++++.+. +. ..+.++.+.|.++||.+.++. +++|++++..+++++++++
T Consensus 278 L~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~ 349 (360)
T 1w23_A 278 IDESNG--FYVGHAEKGSRSLMNVTFNLR-NE-----ELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIAL 349 (360)
T ss_dssp HHTTTT--SSEESSCGGGBCSSEEEEECS-SH-----HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHH
T ss_pred HHHccC--cccccCCchhccCcEEEEEcC-CC-----ccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHH
Confidence 876521 11211 1 12 446777665 31 113578888999999987763 6899999999999999999
Q ss_pred HHHHHHHHHH
Q psy14484 418 TSAIFQTFNE 427 (430)
Q Consensus 418 ~~~l~~~l~~ 427 (430)
+++|++++.+
T Consensus 350 ~~~l~~~~~~ 359 (360)
T 1w23_A 350 RELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=171.00 Aligned_cols=315 Identities=8% Similarity=0.031 Sum_probs=194.1
Q ss_pred CCHHHHHHHHHHHhhcccc------ccCCC--CCHHHHHHHHHHHhhcCCCCC-e-EEEcCCchHHHHHHHHHHHHhhhh
Q psy14484 51 SNSYINKALKNQLNKLEHV------MLSNL--THKPVIKLSEKLSSLTQYKLG-H-CFYGSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~------~~~~~--~~~~~~~l~~~l~~~~~~~~~-~-v~~~~sgteA~~~al~~~~~~~~~ 120 (430)
.+|+|++++.+.+.+.... ....+ ..+..+++++.+++.++...+ + +++|+||++|+..+++.+..
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~---- 90 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK---- 90 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCC----
Confidence 6899999999887542110 01111 123567899999999986553 6 47789999999999987753
Q ss_pred cCCCCCcEEEEEcCCCCCcch-hhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 121 KGFLNKKKFICLQNSYHGETL-GALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
+++.|++.++.++++.. .... ... +...++.+. ..... .|+++++ +
T Consensus 91 ----~gd~vl~~~~~~~~~~~~~~~~------------~~g-~~~~v~~~~~~~~~~~----------~~~~~~~--i-- 139 (362)
T 2c0r_A 91 ----EGQTANYVMTGSWASKALKEAK------------LIG-DTHVAASSEASNYMTL----------PKLQEIQ--L-- 139 (362)
T ss_dssp ----TTCEEEEEECSHHHHHHHHHHH------------HHS-CEEEEEECGGGTTCSC----------CCGGGCC--C--
T ss_pred ----CCCeEEEEecCcHhHHHHHHHH------------HhC-CeEEEecccccccccC----------CCHHHcc--c--
Confidence 45677777665544311 1111 112 233443321 01100 0233332 3
Q ss_pred CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC
Q psy14484 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG 275 (430)
Q Consensus 198 ~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g 275 (430)
.+++++|++.+ ++|++|....+ +++| +|+++|+||+|+ ++.. ...+. .. |++ +++|.++.
T Consensus 140 -~~~t~~v~~~~-~~n~tG~~~~~---l~~i------~~~~vivD~a~~-~~~~--~~~~~--~~--d~~~~s~~K~~g~ 201 (362)
T 2c0r_A 140 -QDNAAYLHLTS-NETIEGAQFKA---FPDT------GSVPLIGDMSSD-ILSR--PFDLN--QF--GLVYAGAQKNLGP 201 (362)
T ss_dssp -CTTEEEEEEES-EETTTTEECSS---CCCC------TTSCEEEECTTT-TTSS--CCCGG--GC--SEEEEETTTTTCC
T ss_pred -CCCcCEEEEeC-CcCccceeccc---cccc------CCCEEEEEChhh-ccCC--ccchh--HC--cEEEEeccccccC
Confidence 35788888888 88999975332 4444 899999999997 4322 11121 12 655 56798864
Q ss_pred CccccEEEEEcHHHHHhhhccCCcccc-------cccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHH
Q psy14484 276 GYLPLSLVMTTDKIYNSIYYKNNINIF-------LHSHSYSGNPLACCAALATLEIFNK----DNILQRISQDMKKITKA 344 (430)
Q Consensus 276 G~~~ig~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~~~~l~~~ 344 (430)
..+|++++++++.+.+.. .....+ .....++.+..++.++.++|+.+.+ +...++.+++.+++.+.
T Consensus 202 --~G~G~l~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (362)
T 2c0r_A 202 --SGVTVVIVREDLVAESPK-HLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDA 278 (362)
T ss_dssp --SSCEEEEEEGGGSSSCCT-TSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred --cCcEEEEEcHHHHhhccc-cCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 238999999988766543 000000 0022345677777888888886544 34566777788888888
Q ss_pred HHchhcC-CCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHH
Q psy14484 345 LTSLITH-PKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTS 419 (430)
Q Consensus 345 l~~l~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~ 419 (430)
|+++... +..... ...+.++.+.+. .. ..+.++++.|.++||.+.++ .+.+|++++..+++++++++++
T Consensus 279 L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~ 352 (362)
T 2c0r_A 279 IDQSGGFYRGCVDVDSRSDMNITFRLA-SE-----ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQ 352 (362)
T ss_dssp HHTSTTSSEESSCGGGBCSSEEEEECS-CH-----HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHH
T ss_pred HHHcCCccccCCChHHcCCcEEEEEcC-Cc-----chHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 8765211 111110 112344555544 21 11467888999999987764 2579999998899999999999
Q ss_pred HHHHHHHH
Q psy14484 420 AIFQTFNE 427 (430)
Q Consensus 420 ~l~~~l~~ 427 (430)
+|++++.+
T Consensus 353 ~l~~~~~~ 360 (362)
T 2c0r_A 353 FMEHFKRS 360 (362)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-17 Score=165.03 Aligned_cols=314 Identities=11% Similarity=-0.000 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHhhcCCCC---------CeEEEcCCchHHHHHHHHHHHHhhhh-cCCC-C--------Cc-EEEEEcCCC
Q psy14484 77 KPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYN-KGFL-N--------KK-KFICLQNSY 136 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~---------~~v~~~~sgteA~~~al~~~~~~~~~-~g~~-~--------~~-~vl~~~~~y 136 (430)
....+++++++++++.+. ..+++|+|||+|+..|+.+++..... .+.. + ++ .|++.++.+
T Consensus 113 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h 192 (486)
T 1js3_A 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (486)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence 445567778888886543 36899999999999999887653111 0000 1 12 244555444
Q ss_pred CCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC---CCeEEEEEcccccc
Q psy14484 137 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH---NKIAAIIIEPLVQC 213 (430)
Q Consensus 137 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~ep~v~~ 213 (430)
+.. ..+... ...+.+.++.+..++. |+++|++++++.. ..+.+|++.. +++
T Consensus 193 ~s~-~~~~~~------------~G~~v~~v~~d~~~~~------------d~~~L~~~i~~~~~~g~~p~~vv~~~-~~n 246 (486)
T 1js3_A 193 SSV-ERAGLI------------GGVKLKAIPSDGKFAM------------RASALQEALERDKAAGLIPFFVVATL-GTT 246 (486)
T ss_dssp HHH-HHHHHH------------HTCEEEEECCCTTSCC------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SCT
T ss_pred HHH-HHHHHh------------CCCceEEeecCCCCCC------------CHHHHHHHHHHHHhCCCCceEEEEeC-CCC
Confidence 332 222211 1223455655433333 8999999997531 1234666666 778
Q ss_pred CCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeee--ecccCCCccccEEEEEcHH-H
Q psy14484 214 AGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCL--SKGITGGYLPLSLVMTTDK-I 289 (430)
Q Consensus 214 ~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~--sK~l~gG~~~ig~~~~~~~-~ 289 (430)
++|.+.+ +++|.++|++||+++|+|++|.++......+.....++ ..|.+++ +|.++.. +++|+++++++ .
T Consensus 247 ~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-~~~G~l~~~~~~~ 321 (486)
T 1js3_A 247 SCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTD 321 (486)
T ss_dssp TTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHH
T ss_pred CCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-cceEEEEEeCHHH
Confidence 8888877 99999999999999999999986432111111101122 3577765 4887765 58999999754 2
Q ss_pred -HHhhhcc-----CCc------ccccc---cCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 290 -YNSIYYK-----NNI------NIFLH---SHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 290 -~~~~~~~-----~~~------~~~~~---~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
.+.+... +.. ..... ..+.....+++.+++..+..-.-++..++..++++++.+.|+++ +.+
T Consensus 322 l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~---~~~ 398 (486)
T 1js3_A 322 LTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD---PRF 398 (486)
T ss_dssp HHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTE
T ss_pred HHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC---CCe
Confidence 3433210 000 00000 00111223333333333321111344566677788888888764 332
Q ss_pred eeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEE-eec----CCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 355 INF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL-RPI----GNTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 355 ~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~-~~~----~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.-. ++...++.|.+. .. .....++.+.|.++|+++ .+. ...+|+++ +..+|+++|++++++|++++.+
T Consensus 399 ~~~~~~~~~~v~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 399 EVCAEVTLGLVCFRLK-GS----DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp EECSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCceeEEEEEec-Ch----HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 221 244566666665 31 122367888898888653 322 25899986 5567999999999999999876
Q ss_pred hh
Q psy14484 428 VI 429 (430)
Q Consensus 428 ~~ 429 (430)
+.
T Consensus 474 ~~ 475 (486)
T 1js3_A 474 LL 475 (486)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=175.86 Aligned_cols=333 Identities=12% Similarity=0.029 Sum_probs=196.9
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhcc-cccc---CCCC----CHHHHHHHHHHHhhcCCCCCe---EEEcCCch
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVML---SNLT----HKPVIKLSEKLSSLTQYKLGH---CFYGSDGA 104 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~----~~~~~~l~~~l~~~~~~~~~~---v~~~~sgt 104 (430)
.|++.++- ...+|+|++++.+.+.+.. ..+. .+.. ....+.++++++++++.+.++ .++.+||+
T Consensus 46 ~i~L~a~e-----~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs 120 (483)
T 1rv3_A 46 GLELIASE-----NFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS 120 (483)
T ss_dssp SEECCTTC-----CCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH
T ss_pred CeEEEcCC-----CCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH
Confidence 45665442 2358999999998776421 0111 0111 234456668899999876643 24445566
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC--C-CCCCCCCCCChh
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT--P-DSRNINKGNSAN 181 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 181 (430)
+|+.+++.++.. +++.|++.++.|.++..-...... ...+ + .......+++ + ..+..
T Consensus 121 ~an~~~~~all~--------pGD~Vl~~~~~~~~~~~~~~~~~~-~~v~--~--~G~~~~~v~~~~~~~~~~i------- 180 (483)
T 1rv3_A 121 PANFAVYTALVE--------PHGRIMGLDLPDGGHLTHGFMTDK-KKIS--A--TSIFFESMAYKVNPDTGYI------- 180 (483)
T ss_dssp HHHHHHHHHHTC--------TTCEEEEECGGGTCCGGGCCBCSS-CBCS--H--HHHHSEEEEECBCTTTCSB-------
T ss_pred HHHHHHHHHhcC--------CCCEEEEecCccCcCcchhhhhcc-cCcc--c--ccceEEEEECccccCCCcC-------
Confidence 999988887754 678899999887766321111000 0000 0 0000123333 2 22222
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCccc-cccccc
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGK-FFACEH 259 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~-~~~~~~ 259 (430)
|+++|++++++ .++++|++ . .++++ .+.+ +++|.++|+++|++||+|++|. |+...|. ...+.
T Consensus 181 -----D~d~le~~i~~--~~tklIi~-~-~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~- 245 (483)
T 1rv3_A 181 -----DYDRLEENARL--FHPKLIIA-G-TSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE- 245 (483)
T ss_dssp -----CHHHHHHHHHH--HCCSEEEE-C-CSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-
T ss_pred -----CHHHHHHHHhh--cCCcEEEE-e-CCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-
Confidence 88999999974 25677777 5 55555 4555 9999999999999999999986 3211111 01111
Q ss_pred CCCCCceee--eecccCCCccccEEEEEcHHH---------------HHhhhccCCcccccccC-CCCCCHHHHHHHHHH
Q psy14484 260 AEIWPDFLC--LSKGITGGYLPLSLVMTTDKI---------------YNSIYYKNNINIFLHSH-SYSGNPLACCAALAT 321 (430)
Q Consensus 260 ~~~~~d~~~--~sK~l~gG~~~ig~~~~~~~~---------------~~~~~~~~~~~~~~~~~-t~~~~~~~~~aa~~~ 321 (430)
..|+++ ++|+++| ++.|++++++++ .+.+.. ..... .-+.+...+++..++
T Consensus 246 ---~~div~~s~~K~l~G--prgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~------~~~~~~~g~~~~~~iaal~~A 314 (483)
T 1rv3_A 246 ---HCHVVTTTTHKTLRG--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINS------AVFPGLQGGPHNHAIAGVAVA 314 (483)
T ss_dssp ---TCSEEEEESSGGGCC--CSCEEEEEECSBCC-------CCBCCHHHHHHH------HHTTTTCCSCCHHHHHHHHHH
T ss_pred ---CCcEEEecCcccCCC--CCceEEEEcchhhhhccccCcchhhHHHHHhhh------hcCCcccCCccHHHHHHHHHH
Confidence 357775 4599965 578999998752 222221 00111 112234444444556
Q ss_pred HHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe--
Q psy14484 322 LEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR-- 395 (430)
Q Consensus 322 l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~-- 395 (430)
++.+.. ++..+++.++.+++.+.|+++ ....+. .+. ..+..+.+. .... . ...+.+.|.+.||.+.
T Consensus 315 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~--~~~~~~~~~v~~~-~~g~-~---~~~~~~~L~~~gI~v~~~ 386 (483)
T 1rv3_A 315 LKQAMTPEFKEYQRQVVANCRALSAALVEL-GYKIVT--GGSDNHLILVDLR-SKGT-D---GGRAEKVLEACSIACNKN 386 (483)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGG--GSCSSSEEEEEGG-GGTC-C---HHHHHHHHHHTTEECEEE
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHhc-CCEecc--CCCCCceEEEecc-CCCC-C---HHHHHHHHHhCCcEEecC
Confidence 665532 345667778888888888765 222111 111 234445554 2111 1 2567788888999988
Q ss_pred --ec------CCEEEEeCCCCCC----HHHHHHHHHHHHHHHHH
Q psy14484 396 --PI------GNTVYLMPPYILN----KNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 396 --~~------~~~lR~~~~~~~t----~e~i~~~~~~l~~~l~~ 427 (430)
|+ .+.+||+++..++ ++++++++++|++++..
T Consensus 387 ~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 387 TCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 54 2589999887666 99999999999998865
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=168.42 Aligned_cols=298 Identities=8% Similarity=-0.031 Sum_probs=181.0
Q ss_pred CCHHHHHHHHHHHhhcc---ccccCCCCCHHHHHHHHHHHhhcCCCCCeEEE---cCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 51 SNSYINKALKNQLNKLE---HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~---~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
++++|.+++.+...... ......+.....+++++.+++.++. +...+ ++||++|+..+++.++.
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~--~~~~~~i~~~sGt~Ai~~al~al~~-------- 105 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA--EAGLVRPQIISGTHAISTALFGILR-------- 105 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC--SEECCBTTSCSHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC--CcccccceeeCHHHHHHHHHHHhCC--------
Confidence 45677777776422111 1122345567788999999999953 33332 56999999999987654
Q ss_pred CCcEEEEEc-CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 125 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 125 ~~~~vl~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++.|++.+ +.|. .+.....+++. ++..+.....+...++.+.+... |+++|+++++ ++++
T Consensus 106 ~Gd~Vl~~~~~~y~-~~~~~~~l~g~--~~~~~~~~G~~~~~v~~~~~~~~------------d~e~l~~~l~---~~tk 167 (431)
T 3ht4_A 106 PGDELLYITGKPYD-TLEEIVGVRGK--GVGSFKEYNIGYNAVPLTEGGLV------------DFEAVAAAIH---SNTK 167 (431)
T ss_dssp TTCEEEECSSSCCT-THHHHTTSSSC--SSSCSGGGTCEEEECCBCTTSSB------------CHHHHHHHCC---TTEE
T ss_pred CCCEEEEeCCCCch-hHHHHHhhccc--ccchHHHcCCEEEEeCCCCCCCc------------CHHHHHhhcC---CCCe
Confidence 567888887 5554 44444433321 22223333444455554333222 8899999985 5788
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCc-ccc
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGY-LPL 280 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~-~~i 280 (430)
+|++++..+|++| ...+.+.+++|.++|++ +|+++|+||+|+.+........ .+....+.+++|.++||+ .+.
T Consensus 168 ~V~i~~sp~np~~-~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~~G 243 (431)
T 3ht4_A 168 MIGIQRSKGYATR-PSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCH---VGADLMAGSLIKNPGGGIVKTG 243 (431)
T ss_dssp EEEEECSCTTSSS-CCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGG---TTCSEEEEETTSGGGTTTCSSC
T ss_pred EEEEECCCCCCCC-CcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCccc---cCCeEEEcCccccCCCCCCCce
Confidence 9988842666666 56677889999999999 9999999999987654333221 233333446889998743 456
Q ss_pred EEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc--CCCeeeEe
Q psy14484 281 SLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPKIINFR 358 (430)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~ 358 (430)
|++++++++++.+... ......+.+.+..+..+.++...++.+ +...++..+++.++.+.|+++.. .|. ...+
T Consensus 244 G~v~~~~~li~~l~~~--~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~ 318 (431)
T 3ht4_A 244 GYIVGKEQYVEACAYR--LTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAP 318 (431)
T ss_dssp EEEEECHHHHHHHHHH--HSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSC
T ss_pred EEEEecHHHHHHHHHH--hccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCC
Confidence 8899999988776540 000111222222111122334444433 34566777888888888887621 111 1234
Q ss_pred ecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 359 QKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 359 ~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
+.+.++.+.+. + ...+.++++.|.+..
T Consensus 319 ~~~li~~i~l~-~-----~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 319 RTDLIQSVQFD-D-----KDRMIAFCQAIQYAS 345 (431)
T ss_dssp CSSSCCEEECC-C-----HHHHHHHHHHHHHTS
T ss_pred CccEEEEEEeC-C-----HHHHHHHHHHHHhcC
Confidence 45567777776 3 112467888888763
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=163.07 Aligned_cols=315 Identities=10% Similarity=0.011 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhhcCCCC---------CeEEEcCCchHHHHHHHHHHHHhhhhc----CCC------CCcEEEEEcCCCC
Q psy14484 77 KPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNK----GFL------NKKKFICLQNSYH 137 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~---------~~v~~~~sgteA~~~al~~~~~~~~~~----g~~------~~~~vl~~~~~yh 137 (430)
+...++.++++++++.+. ...+|++|||+||..|+.+++.....+ |.. ..+.+|+.+...|
T Consensus 113 ~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H 192 (475)
T 3k40_A 113 ELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAH 192 (475)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSC
T ss_pred HHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCch
Confidence 455566777888886442 268999999999999999987653211 100 0123444555555
Q ss_pred CcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccC
Q psy14484 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCA 214 (430)
Q Consensus 138 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~ 214 (430)
-+...+....+ ...+.++.+... . |+++|+++|++. ...+.+|++.. ..++
T Consensus 193 ~s~~~~~~~~g------------~~~~~v~~d~~~-~------------d~~~L~~~i~~~~~~~~~~~~v~~~~-~~t~ 246 (475)
T 3k40_A 193 SSVERAGLLGG------------VKLRSVQSENHR-M------------RGAALEKAIEQDVAEGLIPFYAVVTL-GTTN 246 (475)
T ss_dssp HHHHHHHHHHT------------CEEEEECCBTTB-C------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SCTT
T ss_pred HHHHHHHHHcC------------CceEEEECCCCC-c------------CHHHHHHHHHHHHHCCCccEEEEEEe-cCCC
Confidence 54333322222 233455554333 2 899999999754 12256677776 7788
Q ss_pred CCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHH-HH
Q psy14484 215 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDK-IY 290 (430)
Q Consensus 215 ~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~-~~ 290 (430)
+|.+.| +++|.++|++||+++|+|++|.+.......+.....++ ..|.++++ |.+++. ..+|+++++++ ..
T Consensus 247 ~G~~~~----l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~~~~~~~l 321 (475)
T 3k40_A 247 SCAFDY----LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVN-FDCSAMWLKDPSWV 321 (475)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESSGGGC
T ss_pred CcCcCC----HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCC-CceEEEEEeCHHHH
Confidence 898877 99999999999999999999975322211111111232 35877765 887765 46888888754 32
Q ss_pred -Hhhhcc-----CCc-c---cccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeE
Q psy14484 291 -NSIYYK-----NNI-N---IFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINF 357 (430)
Q Consensus 291 -~~~~~~-----~~~-~---~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 357 (430)
+.+... ... . .....+...+.+.......++|+.+.. ++..++..++++++.+.|+++..+..+ .
T Consensus 322 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~--~ 399 (475)
T 3k40_A 322 VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA--A 399 (475)
T ss_dssp ---------------------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES--S
T ss_pred HHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe--c
Confidence 222110 000 0 000000001111222334444544433 345667778888888888765222211 1
Q ss_pred eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEE-eec---C-CEEEEeCC-CCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 358 RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLL-RPI---G-NTVYLMPP-YILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 358 ~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~-~~~---~-~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+....++.|.+. .. .....++.++|.++|.+. .+. + ..+|+++. ..+|+++|++++++|+++.++++
T Consensus 400 ~~~~~iv~f~~~-~~----~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 400 EINMGLVCFRLK-GS----NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME 472 (475)
T ss_dssp CCBTTEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEeC-Cc----hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 234556666665 32 122467889999887643 332 2 57999865 44699999999999999998875
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=168.03 Aligned_cols=312 Identities=10% Similarity=0.057 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHhhccccccCCCC--CHHHHHHHHHHHhhcCCC-CCeEEE-cCCchHHHHHHHHHHHHhhhhcCCCCC
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLT--HKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYNKGFLNK 126 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~-~~~v~~-~~sgteA~~~al~~~~~~~~~~g~~~~ 126 (430)
.+|+|++++.+....... ....++ .+..+++++++++.++.+ .++|++ ++||++|++.+++.+.. ++
T Consensus 51 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~--------~g 121 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFG-TSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLID--------KR 121 (398)
T ss_dssp CCHHHHHGGGTTTTTTTT-SCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCS--------SC
T ss_pred CCHHHHHHHhhcCCCccC-cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcC--------CC
Confidence 578898888763111000 001121 235678999999999865 358998 99999999999998742 32
Q ss_pred cEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q psy14484 127 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206 (430)
Q Consensus 127 ~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 206 (430)
++.+...+|+.......... ++......++.++.... +. + + .+++++|+
T Consensus 122 --v~~v~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~g~~~------------~~-~----i---~~~~~~v~ 170 (398)
T 2fyf_A 122 --SLHLTYGEFSAKFASAVSKN---------PFVGEPIIITSDPGSAP------------EP-Q----T---DPSVDVIA 170 (398)
T ss_dssp --EEEEECSHHHHHHHHHHHHC---------TTSCCCEEEECCTTCCC------------CC-C----C---CTTCSEEE
T ss_pred --eEEEeCCHHHHHHHHHHHHh---------CCCCceEEEecCCCCCC------------Cc-c----c---cCCCCEEE
Confidence 23335566653211111000 01123344444421110 11 0 2 24677888
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeee--ecccCCCccccEEEE
Q psy14484 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL--SKGITGGYLPLSLVM 284 (430)
Q Consensus 207 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~--sK~l~gG~~~ig~~~ 284 (430)
+.. ++|++|.+.+ +++|.++ +|+++|+||+|+.+... .... .+|++++ +|.++++ .++|+++
T Consensus 171 ~~~-~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~-gg~g~l~ 234 (398)
T 2fyf_A 171 WAH-NETSTGVAVA----VRRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASD-GGLWLAI 234 (398)
T ss_dssp EES-EETTTTEECC----CCCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSC-SSEEEEE
T ss_pred EeC-cCCCcceecc----hHHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCC-CceEEEE
Confidence 888 8999997776 4444444 89999999999844321 1111 2677755 5998875 2589999
Q ss_pred EcHHHHHhhhcc---CCc-cccc----------ccCC-CCCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHH
Q psy14484 285 TTDKIYNSIYYK---NNI-NIFL----------HSHS-YSGNPLACCAALATLEIFNKD----NILQRISQDMKKITKAL 345 (430)
Q Consensus 285 ~~~~~~~~~~~~---~~~-~~~~----------~~~t-~~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l 345 (430)
+++++++.+... +.. .++. .+.+ .+.+..++.++.++|+.+.+. +..++.+++.+++.+.|
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L 314 (398)
T 2fyf_A 235 MSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWA 314 (398)
T ss_dssp ECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 999887765310 000 0000 0122 344566666777778765432 34566777788888888
Q ss_pred HchhcCCCeeeE---e-ecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHH
Q psy14484 346 TSLITHPKIINF---R-QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQ 415 (430)
Q Consensus 346 ~~l~~~~~~~~~---~-~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~ 415 (430)
+++ +++... + ..+. ++++.+. .+. . +.++.+.|.++||.+.++ ++++|++++..+++++++
T Consensus 315 ~~~---~g~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~ 385 (398)
T 2fyf_A 315 QER---PYTTPFVTDPGLRSQVVGTIDFV-DDV---D--AGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVS 385 (398)
T ss_dssp HHS---TTEEESCCSGGGBCSSEEEEEEC-TTS---C--HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHH
T ss_pred HHc---CCceeccCChhhcCCcEEEEECC-CCC---C--HHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHH
Confidence 765 222211 1 1334 7777775 321 1 367999999999999763 368999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy14484 416 HMTSAIFQTFNE 427 (430)
Q Consensus 416 ~~~~~l~~~l~~ 427 (430)
+++++|++++.+
T Consensus 386 ~~~~~l~~~l~~ 397 (398)
T 2fyf_A 386 ALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-18 Score=163.82 Aligned_cols=285 Identities=14% Similarity=0.111 Sum_probs=174.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.+..+...+++++++++.+ .+..++++||++|+..+++.+.. +++.|++.++.|++......
T Consensus 78 r~~~p~~~~le~~lA~l~g--~~~~v~~~sG~~Ai~~al~al~~--------~Gd~Vi~~~~~y~~~~~~~~-------- 139 (430)
T 3ri6_A 78 RSSNPTVEDLEQRLKNLTG--ALGVLALGSGMAAISTAILTLAR--------AGDSVVTTDRLFGHTLSLFQ-------- 139 (430)
T ss_dssp --CCHHHHHHHHHHHHHHT--CSEEEEESCHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHH--------
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEECCHHHHHHHHHHHHhC--------CCCEEEEcCCCchhHHHHHH--------
Confidence 5667888999999999994 45688888999999999987754 67889999999987533211
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
........+..+++.. |+++++++++ +++++|++|. ++|++|.+.+ +++|.++|
T Consensus 140 -~~~~~~G~~~~~v~~~-----------------d~~~l~~ai~---~~t~~v~~e~-p~NptG~~~d----l~~i~~la 193 (430)
T 3ri6_A 140 -KTLPSFGIEVRFVDVM-----------------DSLAVEHACD---ETTKLLFLET-ISNPQLQVAD----LEALSKVV 193 (430)
T ss_dssp -THHHHTTCEEEEECTT-----------------CHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred -HHHHHcCCEEEEeCCC-----------------CHHHHHHhhC---CCCeEEEEEC-CCCCCCeecC----HHHHHHHH
Confidence 0011122334455443 7889998885 5789999999 9999998877 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEE--cH-HH------------------HH
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT--TD-KI------------------YN 291 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~--~~-~~------------------~~ 291 (430)
+++|+++|+||+++ .+. .......+....+.+++|.++|+...+|.+++ .+ .+ ++
T Consensus 194 ~~~g~~livD~a~~-~~~---~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~ 269 (430)
T 3ri6_A 194 HAKGIPLVVDTTMT-PPY---LLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLY 269 (430)
T ss_dssp HTTTCCEEEECTTS-CTT---TCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHH
T ss_pred HHcCCEEEEECCCc-ccc---cCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHH
Confidence 99999999999987 221 11122234433444678999873234555544 22 22 11
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEe-------------
Q psy14484 292 SIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFR------------- 358 (430)
Q Consensus 292 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------------- 358 (430)
.+.. ..........++..+..+...++.+. ...++..++++++.+.|++. |.+..+.
T Consensus 270 ~~~~-----~~~~~~g~~~~~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~~---p~v~~V~~P~l~~~p~~~~~ 339 (430)
T 3ri6_A 270 KARK-----EVFQNLGPSLSPHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLSI---PQVKCVNHPSLPDSPFYAIA 339 (430)
T ss_dssp HHHH-----THHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC---TTCEEEECTTSTTSTTHHHH
T ss_pred HHHH-----HHHHhcCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhCC---CCccEEECCCCCCCccHHHH
Confidence 1111 00011111235555554444554432 23455566777777777643 3333221
Q ss_pred ----ecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----------------------------cCCEEEEeC
Q psy14484 359 ----QKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----------------------------IGNTVYLMP 405 (430)
Q Consensus 359 ----~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----------------------------~~~~lR~~~ 405 (430)
+.|. +++|++. + ...+.+|.+.+...++.+.. .++.+|+++
T Consensus 340 ~~~~g~Gg~~lsf~l~-~-----~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsv 413 (430)
T 3ri6_A 340 KRQFRYAGSILTFELE-S-----KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSV 413 (430)
T ss_dssp HHHCSSCCSEEEEECS-S-----HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEEC
T ss_pred HHhCCCCceEEEEEEC-C-----HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEe
Confidence 3366 8899886 3 11245677766543322211 136789987
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l 425 (430)
.. |+++.+++.|+++|
T Consensus 414 G~----E~~~dl~~dl~~al 429 (430)
T 3ri6_A 414 GI----EEIEDLKEDILQAL 429 (430)
T ss_dssp CS----SCHHHHHHHHHHHH
T ss_pred cc----CCHHHHHHHHHHhh
Confidence 64 44556666666654
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-17 Score=157.21 Aligned_cols=316 Identities=13% Similarity=0.045 Sum_probs=194.9
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH-HhhcCCCCCeEEEcCCchHHHHHHHHHH-HHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLTQYKLGHCFYGSDGASAVEVALKMS-FHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~v~~~~sgteA~~~al~~~-~~~~~~~g~~~~~~ 128 (430)
.+|++.+++.+.+..... ....+...++++.+ ++.++ ..+++++++||++|+..+++.+ .. +++.
T Consensus 14 ~~~~i~~a~~~~~~~~~~----~~~~~~~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~~--------~Gd~ 80 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIY----TNYGPINQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKRK--------KGKY 80 (377)
T ss_dssp CGGGGHHHHHHHHHHTCC----SSSCHHHHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSCT--------TCCE
T ss_pred CcHHHHHHHHHHHHcCCc----ccCCHHHHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCCC--------CcCE
Confidence 357889999998876431 11246678999999 99985 3678999999999999999876 33 6688
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEE
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIII 207 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ 207 (430)
||+.+++|+......... ....++++.+ +++.. |++++++++.....++++|+
T Consensus 81 Vi~~~~~~~~~~~~~~~~-------------G~~~~~v~~~~~~~~~------------d~~~l~~~i~~~~~~tk~v~- 134 (377)
T 3ju7_A 81 ALMPSFTFPATPLAAIWC-------------GLEPYFIDISIDDWYM------------DKTVLWDKIEELKEEVAIVV- 134 (377)
T ss_dssp EEEESSSCTHHHHHHHHT-------------TCEEEEECBCTTTCSB------------CHHHHHHHHHHHGGGEEEEC-
T ss_pred EEECCCCcHHHHHHHHHc-------------CCEEEEEecCCccCCc------------CHHHHHHHHhcCCCCceEEE-
Confidence 999999987654332221 1223444443 22222 88999998832111377776
Q ss_pred ccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC-CCCCceeeee----cccCCCccccEE
Q psy14484 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWPDFLCLS----KGITGGYLPLSL 282 (430)
Q Consensus 208 ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~-~~~~d~~~~s----K~l~gG~~~ig~ 282 (430)
| + +.+|...+ +++|.++|+ ||+++|+|++|+ +|.. +.-... +...|+.++| |.+++| ..|+
T Consensus 135 -~-~-~~~G~~~~----~~~i~~la~-~~~~vi~D~a~a-~g~~---~~~~~~g~~~~d~~~~S~~~~K~l~~g--~gG~ 200 (377)
T 3ju7_A 135 -P-Y-ATFGSWMN----LEEYEELEK-KGVPVVVDAAPG-FGLM---NGGMHYGQDFSGMIIYSFHATKPFGIG--EGGL 200 (377)
T ss_dssp -C-B-CGGGBCCC----CHHHHHHHH-TTCCBEEECTTC-TTCE---ETTEETTTTCSSEEEEECBTTSSSCCB--SCEE
T ss_pred -E-E-CCCCCccC----HHHHHHHHh-cCCEEEEECCCc-cCCe---ECCEeccCCCCcEEEEECCCCCcCCCC--CcEE
Confidence 3 3 34565655 899999999 999999999997 4321 111112 2224666554 888874 4667
Q ss_pred EEEc-HHHHHhhhc---cCCcc---cccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcC--CC
Q psy14484 283 VMTT-DKIYNSIYY---KNNIN---IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH--PK 353 (430)
Q Consensus 283 ~~~~-~~~~~~~~~---~~~~~---~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~--~~ 353 (430)
++.+ +++.+.+.. .+... ....+..+..+++.++.+...++.+ +...++.+++.+++.+.|+++... +.
T Consensus 201 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 278 (377)
T 3ju7_A 201 IYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGW 278 (377)
T ss_dssp EEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred EEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 7664 566554432 11000 0011223445566655565555533 345677778888888888776321 11
Q ss_pred eee--EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------------------------CCEEEEeC
Q psy14484 354 IIN--FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------GNTVYLMP 405 (430)
Q Consensus 354 ~~~--~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------------------------~~~lR~~~ 405 (430)
... ......++.+.+. +. . . .+.+.+.|.++||.+... ...+|+.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~-~~-~-~---~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~ 352 (377)
T 3ju7_A 279 QLQKTEAVIQQFMPILCP-EE-V-R---NKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPL 352 (377)
T ss_dssp BCCCCSCBCCSSEEEECC-TT-S-C---HHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECC
T ss_pred cCCCCCcceEEEEEEEeC-Ch-h-h---HHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCC
Confidence 111 0111122333333 21 1 1 367999999999977531 14789998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+...|++|++.+++.|++++..
T Consensus 353 ~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 353 WEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp CTTCCHHHHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHHHHHHHHHhc
Confidence 9899999999999999887653
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=161.51 Aligned_cols=325 Identities=9% Similarity=0.007 Sum_probs=197.0
Q ss_pred CCCCHHHHHHHHHHHhhccccccC----CC----CCHHHHHHHHHHHhhcCCCC-CeEEE-cCCchHHHHHHHHHHHHhh
Q psy14484 49 GHSNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYKL-GHCFY-GSDGASAVEVALKMSFHYW 118 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~~~~----~~----~~~~~~~l~~~l~~~~~~~~-~~v~~-~~sgteA~~~al~~~~~~~ 118 (430)
+.-+|+|.+++.+.+.+....+.+ .. .....++.++.++++++++. .+|+| ++|||+|++.+++.+....
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~ 101 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLK 101 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGS
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCC
Confidence 346899999999987643222111 11 12456788889999998654 47888 5899999999999776421
Q ss_pred hhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 119 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 119 ~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
+++++++...+.++....... .........++.+..... ++++++..+
T Consensus 102 ------~Gd~v~~~~~g~~~~~~~~~a-----------~~~G~~~~~~~~~~~~~~------------~~~~~~~~i--- 149 (377)
T 3e77_A 102 ------AGRCADYVVTGAWSAKAAEEA-----------KKFGTINIVHPKLGSYTK------------IPDPSTWNL--- 149 (377)
T ss_dssp ------TTCEEEECCCSHHHHHHHHHH-----------TTTSEEEECSCCCSSSCS------------CCCGGGCCC---
T ss_pred ------CCCeEEEEECCHHHHHHHHHH-----------HHhCCceEEeccCCCcCC------------CCChHHhcc---
Confidence 246676655555443111000 001111122233221111 233344334
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCC
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGG 276 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG 276 (430)
.+++++|.+.. +.+.+|.+.| + +|+++|+++++|.+|+ +|.. .+.++.++ ++++| |.+| .
T Consensus 150 ~~~t~lV~~~h-~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g~~--~id~~~~~----~~~~s~~K~~g-p 211 (377)
T 3e77_A 150 NPDASYVYYCA-NETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FLSK--PVDVSKFG----VIFAGAQKNVG-S 211 (377)
T ss_dssp CTTCSCEEEES-EETTTTEECS----S-----CCCCTTCCEEEECTTT-TTSS--CCCGGGCS----EEEEEGGGTTS-C
T ss_pred CCCccEEEEeC-ccCchheEch----h-----hhccCCCEEEEEcccc-cCCC--CCchhhcC----EEEEecccccC-C
Confidence 35667777766 6666798888 4 4889999999999997 5432 23344333 45555 8884 3
Q ss_pred ccccEEEEEcHHHHHhhhccCCcccc------cccCCC-CCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHH
Q psy14484 277 YLPLSLVMTTDKIYNSIYYKNNINIF------LHSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKAL 345 (430)
Q Consensus 277 ~~~ig~~~~~~~~~~~~~~~~~~~~~------~~~~t~-~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l 345 (430)
..+|++++++++.+.+.+. .+..+ ....++ +++..+..+..++|+.+.+. +..++.+++.+++++.|
T Consensus 212 -~G~g~l~~~~~~l~~~~~~-~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L 289 (377)
T 3e77_A 212 -AGVTVVIVRDDLLGFALRE-CPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEII 289 (377)
T ss_dssp -TTCEEEEEETTSCSCCCTT-SCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccEEEEEcHHHHhhccCC-CCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 4689999998876544320 00000 011222 34556666677788876543 45677788888888888
Q ss_pred HchhcCC-CeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHHHHH
Q psy14484 346 TSLITHP-KIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 346 ~~l~~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+++.... ..... ...+.++.|.++ .- ....++...+.+.+.++||.+.++. +.+|+++...+|++||+.+++.
T Consensus 290 ~~~~g~~~~~~~~~~rs~~ivsf~~~-~~-~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~a 367 (377)
T 3e77_A 290 DNSQGFYVCPVEPQNRSKMNIPFRIG-NA-KGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAF 367 (377)
T ss_dssp HTSTTSEECCSCGGGBCSSEEEEEES-ST-TCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred HhcCCceecCCCHHHcCCcEEEEEcC-CC-CCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHH
Confidence 8763221 11011 122445777776 31 1112222457788889999987652 5699999999999999999999
Q ss_pred HHHHHHH
Q psy14484 421 IFQTFNE 427 (430)
Q Consensus 421 l~~~l~~ 427 (430)
|++++++
T Consensus 368 l~~~~~~ 374 (377)
T 3e77_A 368 MKKFLEM 374 (377)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=167.14 Aligned_cols=254 Identities=8% Similarity=0.028 Sum_probs=159.4
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCc----EEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK----KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD 170 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~----~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (430)
++|++|+|+++|+..+++++.. +++ .|++.+|+|.++.......+. ....++.
T Consensus 92 ~~i~~t~G~~~al~~~~~~l~~--------~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~-- 148 (391)
T 3bwn_A 92 RYIVVGTGSTQLCQAAVHALSS--------LARSQPVSVVAAAPFYSTYVEETTYVRS-------------GMYKWEG-- 148 (391)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHH--------TSSSSSEEEEECSSCCTHHHHHHHTTCB-------------TTEEEEE--
T ss_pred CeEEEeCChHHHHHHHHHHhcC--------CCCCCcceEEEcCCCchhHHHHHHHcCC-------------eEEEecC--
Confidence 5899999999999999998875 455 899999999876443332211 1122222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCC
Q psy14484 171 SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGC 248 (430)
Q Consensus 171 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g--i~li~DEv~~g~ 248 (430)
|.+.++ ..+++++++.. ++|++|.+.. +|.+ ++++ +++|+||+|..
T Consensus 149 ----------------d~~~l~------~~~~k~v~l~~-p~NPtG~~~~------~l~~--~~~~~~~~ii~De~y~~- 196 (391)
T 3bwn_A 149 ----------------DAWGFD------KKGPYIELVTS-PNNPDGTIRE------TVVN--RPDDDEAKVIHDFAYYW- 196 (391)
T ss_dssp ----------------ESTTCC------CCSCEEEEEES-SCTTTCCCCC------CCC-------CCCEEEEECTTCS-
T ss_pred ----------------CHHHcC------CCCCEEEEECC-CCCCCchhHH------HHHH--HhhcCCCEEEEeCCCCC-
Confidence 112222 13567776666 7888887763 2333 2255 99999999962
Q ss_pred CCcccccccccCCCCCceeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
.. ...... ..+....+.+|||.++ .| +|+|++++ ++++++.+.. .....+++.+.+++.++.++|+...
T Consensus 197 ~~-~~~l~~-~~~~~i~~~S~SK~~g~~G-lRiG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~l~~~~ 267 (391)
T 3bwn_A 197 PH-YTPITR-RQDHDIMLFTFSKITGHAG-SRIGWALVKDKEVAKKMVE------YIIVNSIGVSKESQVRTAKILNVLK 267 (391)
T ss_dssp TT-TSCCCC-CBCCSEEEEEHHHHHSCGG-GCEEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred CC-CCcccc-CCCCeEEEEechhhcCCCc-cceEEEEecCHHHHHHHHH------HhcccccCCCHHHHHHHHHHHhCcc
Confidence 21 111111 1222223447899987 46 89999997 8888887765 2222345678888888888886432
Q ss_pred h--------cC----HHHHHHHHHHHHHHHHHchhcCCCeee--------------EeecceEEEEEEeecCCccchhHH
Q psy14484 327 K--------DN----ILQRISQDMKKITKALTSLITHPKIIN--------------FRQKGMIWAFDVIIEDPEQIETFS 380 (430)
Q Consensus 327 ~--------~~----~~~~~~~~~~~l~~~l~~l~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~a 380 (430)
. +. ..+.++++.+++.+.|+++ +.+.. .+..|.++++.+. +.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~-~~-------- 335 (391)
T 3bwn_A 268 ETCKSESESENFFKYGREMMKNRWEKLREVVKES---DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK-EE-------- 335 (391)
T ss_dssp HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC---SSEECCCCCCEEETTTTEEECCCCSEEEEEES-SS--------
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccCCCcceEEEecCC-cH--------
Confidence 1 23 3455566666666666654 22211 1233456666665 31
Q ss_pred HHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 381 KKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 381 ~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
..+.+.|.++||.+.|+ .+++||+++ .+++++++++++|+++++
T Consensus 336 ~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 23566777899999985 368999776 489999999999987764
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-19 Score=171.00 Aligned_cols=318 Identities=9% Similarity=-0.005 Sum_probs=188.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhh-ccc---cccCC-C---CCHHHHHHHHHHHhhcC--CCCCeEEEcC
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK-LEH---VMLSN-L---THKPVIKLSEKLSSLTQ--YKLGHCFYGS 101 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~---~~~~~-~---~~~~~~~l~~~l~~~~~--~~~~~v~~~~ 101 (430)
+.+.++||..+ ...++ .++.+++++.+.+.. ... +.... + ..++++.+++.+.+... .++++|++|+
T Consensus 54 ~~~~~i~l~~g--~~~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~ 130 (427)
T 2hox_A 54 IQGCSADVASG--DGLFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGV 130 (427)
T ss_dssp CTTCCEECCSC--CCGGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEES
T ss_pred CCCceEEecCc--CCCCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeC
Confidence 44566777665 23332 235666777765521 111 11111 2 23444555555544321 4678999999
Q ss_pred CchHHHHHHHHHH--------HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCC
Q psy14484 102 DGASAVEVALKMS--------FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRN 173 (430)
Q Consensus 102 sgteA~~~al~~~--------~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (430)
|+++|+..+++++ .. +++.|++.+|+|.++.......+.. . +. +.
T Consensus 131 G~~~al~~~~~~l~~~~~~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~g~~-~------------~~--~~---- 183 (427)
T 2hox_A 131 GVTQLIHGLVISLSPNMTATPDA--------PESKVVAHAPFYPVFREQTKYFDKK-G------------YV--WA---- 183 (427)
T ss_dssp HHHHHHHHHHHHHSCCTTTCTTS--------CCEEEEECSSCCHHHHHHHHHSCBT-T------------EE--EE----
T ss_pred CHHHHHHHHHHHHhhccccccCC--------CCCEEEEeCCCcccHHHHHHHcCCe-e------------ee--ec----
Confidence 9999999999887 43 5688999999998765443332211 0 11 11
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccc
Q psy14484 174 INKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253 (430)
Q Consensus 174 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~ 253 (430)
.|+++|+++++ .+++++++.. ++|++|.+.+ +. ++ ++..+.|+.+-+ ...+
T Consensus 184 ------------~d~~~l~~~~~---~~~k~v~l~~-p~NPtG~~~~--~~-------l~--~~~~i~d~~~~~--~~~s 234 (427)
T 2hox_A 184 ------------GNAANYVNVSN---PEQYIEMVTS-PNNPEGLLRH--AV-------IK--GCKSIYDMVYYW--PHYT 234 (427)
T ss_dssp ------------EEGGGGTTCSC---GGGEEEEEES-SCTTTCCCCC--CS-------ST--TCEEEEECTTCS--TTTS
T ss_pred ------------CCHHHHHHhhc---CCceEEEEcC-CCCCcccccH--HH-------Hc--CCCEEEeecccC--CCCC
Confidence 05567776664 3566777766 7888886665 32 22 456778876531 1101
Q ss_pred ccccccCCCCCceeeeecccC-CCccccEEEEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----
Q psy14484 254 FFACEHAEIWPDFLCLSKGIT-GGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN----- 326 (430)
Q Consensus 254 ~~~~~~~~~~~d~~~~sK~l~-gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~----- 326 (430)
...+. .+...-+.+|||.++ .| +|+|++++ ++++++.+.. .....+++.+.+++.++.++|+...
T Consensus 235 ~~~~~-~~~~i~~~S~SK~~g~~G-~RiG~~~~~~~~l~~~l~~------~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~ 306 (427)
T 2hox_A 235 PIKYK-ADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLN------YMTKNTEGTPRETQLRSLKVLKEVVAMVKT 306 (427)
T ss_dssp CCCSC-BCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccC-CCceEEEEeChhcCCCCC-ceEEEEEECCHHHHHHHHH------HHHhcCCCCCHHHHHHHHHHhhcchhhhcc
Confidence 11111 122222347899987 46 79999999 4888887765 2233445677888877777776431
Q ss_pred ----hcCH----HHHHHHHHHHHHHHHHchhcCCC-----------eee-EeecceEEEEEEeecCCccchhHHHHHHHH
Q psy14484 327 ----KDNI----LQRISQDMKKITKALTSLITHPK-----------IIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386 (430)
Q Consensus 327 ----~~~~----~~~~~~~~~~l~~~l~~l~~~~~-----------~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~ 386 (430)
.+++ .++++++.+++.+.|+++..... +.. .+..|+++++.+. .+ ..++++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~-~~-------~~~~~~~ 378 (427)
T 2hox_A 307 QKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCE-WE-------EDKDCYQ 378 (427)
T ss_dssp HTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEEC-SG-------GGCSHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECC-Cc-------HHHHHHH
Confidence 1233 35556666667676665411110 001 1222566666766 31 1346676
Q ss_pred HH-HCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 387 AL-KNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 387 l~-~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
|+ ++||.+.|+ .+++|+++. .+++++++++++|++++.
T Consensus 379 ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 379 TFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp HHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 65 789999985 368999776 489999999999998874
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=161.28 Aligned_cols=316 Identities=11% Similarity=0.053 Sum_probs=178.7
Q ss_pred CCHHHHHHHHHHHhh-ccccccC---CCC----CHHHHHHHHHHHhhcCCCCC---eEEEcCCchHHHHHHHHHHHHhhh
Q psy14484 51 SNSYINKALKNQLNK-LEHVMLS---NLT----HKPVIKLSEKLSSLTQYKLG---HCFYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~-~~~~~~~---~~~----~~~~~~l~~~l~~~~~~~~~---~v~~~~sgteA~~~al~~~~~~~~ 119 (430)
.+|+|++|+...+.+ +...+.. ... ..+....+++++++++...+ ..++++||++||..++..++.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~--- 142 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--- 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcC---
Confidence 479999998887643 2211110 111 23333455889999976654 245667999999999998764
Q ss_pred hcCCCCCcEEEEEcCCCCCcchh-------hhccCCCccchhhhhccCCCeeEeCCC---CCCCCCCCCChhHHHHHHHH
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLG-------ALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++.|++.++.|.++..- ....++ .....++++ ..+. .|++
T Consensus 143 -----pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g------------~~~~~~~~~vd~~~~~------------iD~d 193 (490)
T 2a7v_A 143 -----PHDRIMGLDLPDGGHLTHGYMSDVKRISATS------------IFFESMPYKLNPKTGL------------IDYN 193 (490)
T ss_dssp -----SCEECCC-------------------------------------------CCBCTTTCS------------BCHH
T ss_pred -----CCCEecccCccccccccchhhhcchhHHHcC------------CeEEEEecccccccCC------------cCHH
Confidence 678888888777554211 011111 001112222 1122 2899
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCccc-ccccccCCCCCcee
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGK-FFACEHAEIWPDFL 267 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~-~~~~~~~~~~~d~~ 267 (430)
+|++.+.++ ++++|++.. ..+ |...+ +++|.++|++||++||+|++|. |+...|. ...+. ..|++
T Consensus 194 ~le~~l~~~--~~klIi~~~-s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv 260 (490)
T 2a7v_A 194 QLALTARLF--RPRLIIAGT-SAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIV 260 (490)
T ss_dssp HHHHHHHHH--CCSEEEECC-SSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEE
T ss_pred HHHHHHhhc--CCcEEEEcC-CCC--CCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEE
Confidence 999998753 345666544 222 32334 9999999999999999999975 3211221 11111 24666
Q ss_pred --eeecccCCCccccEEEEEcHH---------------HHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHHHhh--
Q psy14484 268 --CLSKGITGGYLPLSLVMTTDK---------------IYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEIFNK-- 327 (430)
Q Consensus 268 --~~sK~l~gG~~~ig~~~~~~~---------------~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~~~l~~~~~-- 327 (430)
+++|+++| .+.|+++++++ +.+.+.. ....++.+ .++..+++..+++.....
T Consensus 261 ~~S~hK~l~G--p~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~------~~~~g~qggp~~~~iaAla~Al~~~~~~~ 332 (490)
T 2a7v_A 261 TTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPM 332 (490)
T ss_dssp EEESSGGGCS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHH
T ss_pred EECCcccCcc--ccchheeeccchhcccccccchhhHHHHHHHHH------HhcccCCCCchHHHHHHHHHHHHHHhhhh
Confidence 46699965 46788888764 3333332 11122222 234444444445554432
Q ss_pred -cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------
Q psy14484 328 -DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------- 397 (430)
Q Consensus 328 -~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------- 397 (430)
+++.+++.++++++.+.|++. .+..+.. .....++.+.+. .... . ..++.+.|.+.||.+...
T Consensus 333 ~~~~~~~~~~na~~L~~~L~~~-G~~v~~~-~t~t~lv~vdl~-~~g~-~---~~~~~~~L~~~GI~v~~~~~p~d~~p~ 405 (490)
T 2a7v_A 333 FREYSLQVLKNARAMADALLER-GYSLVSG-GTDNHLVLVDLR-PKGL-D---GARAERVLELVSITANKNTCPGDRSAI 405 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCEEGGG-SCSSSEEEEECT-TTTC-C---HHHHHHHHHHTTEECEEECCTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CcEEecC-CCCCeEEEEEeC-CCCC-C---HHHHHHHHHhCCeEEecCccCCCCCCC
Confidence 446677888999999999875 2221110 012245555554 3211 1 356788888999998741
Q ss_pred -CCEEEEeCC----CCCCHHHHHHHHHHHHHHHH
Q psy14484 398 -GNTVYLMPP----YILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 -~~~lR~~~~----~~~t~e~i~~~~~~l~~~l~ 426 (430)
+..+|+..+ ..++++|++++++.|.+++.
T Consensus 406 ~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 406 TPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp SCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 367999654 34689999999999998875
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=156.15 Aligned_cols=291 Identities=9% Similarity=0.040 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
+...+++++++++++.+.+++.+++|++.++++++.+++. . ++++|++.++.|+.+....... .
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~-~------~gd~Viv~~~~h~s~~~~~~~~---------a 171 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE-T------GRMGVLVSQGVHPEYRAVLRAY---------L 171 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH-H------TCCEEEEETTSCHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc-C------CCCEEEEcCccCHhHHHHHHHH---------H
Confidence 5678999999999976666778999999555554433322 1 5678888777665432111110 0
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
.....+++.++. ++... |+++ + .+++++|+++. + |++|.+.+ +++|.++|+++|
T Consensus 172 ~~~G~~v~~v~~-~~~~~------------d~~~----i---~~~t~~v~i~~-p-n~tG~~~~----l~~i~~la~~~g 225 (438)
T 1wyu_A 172 EAVGAKLLTLPL-EGGRT------------PLPE----V---GEEVGAVVVQN-P-NFLGALED----LGPFAEAAHGAG 225 (438)
T ss_dssp HHTTCEEEEECC-BTTBC------------CCCC----C---CTTEEEEEEES-S-CTTSBCCC----HHHHHHHHHHTT
T ss_pred HHCCCEEEEEcC-cCCcc------------CHHH----h---CCCeEEEEEEC-C-CCCeEEec----HHHHHHHHHHcC
Confidence 001122344443 11111 3333 3 35788999888 8 88898876 999999999999
Q ss_pred CEEEEecc-ccCCCCcccccccccCCCCCceeeee-cccC-----CCccccEEEEEcHHHHHhhhcc--C------Cccc
Q psy14484 237 IHLIADEI-AVGCGRTGKFFACEHAEIWPDFLCLS-KGIT-----GGYLPLSLVMTTDKIYNSIYYK--N------NINI 301 (430)
Q Consensus 237 i~li~DEv-~~g~g~~g~~~~~~~~~~~~d~~~~s-K~l~-----gG~~~ig~~~~~~~~~~~~~~~--~------~~~~ 301 (430)
+++|+|.. ++ ++..... .. ..+|++++| |.++ +| .++|++++++++.+.+... + ..+.
T Consensus 226 ~~vivd~d~~a-~g~~~~~---~~--~g~D~~~~s~kk~~~~~~~~G-p~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 298 (438)
T 1wyu_A 226 ALFVAVADPLS-LGVLKPP---GA--YGADIAVGDGQSLGLPMGFGG-PHFGFLATKKAFVRQLPGRLVSETVDVEGRRG 298 (438)
T ss_dssp CEEEEECCTTG-GGTBCCH---HH--HTCSEEEEECTTTTCCCGGGC-SCCEEEEECGGGGGGCCSCCEEEEEBTTSCEE
T ss_pred CEEEEEechhh-ccCcCCC---cc--CCCCEEEECCcccCCCccCCC-CCeeEEEEcHHHHHhCCCceeccccccCCCcc
Confidence 99996622 22 2211111 11 246888875 6532 24 4799999999887665320 0 0000
Q ss_pred c------------cccCCCCC---CHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE
Q psy14484 302 F------------LHSHSYSG---NPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMI 363 (430)
Q Consensus 302 ~------------~~~~t~~~---~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~ 363 (430)
+ ....|++. +.++..++...+..+.. ++..++.+++.+++.+.|+++. ++........+
T Consensus 299 ~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~ 375 (438)
T 1wyu_A 299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVRPFTPKPFF 375 (438)
T ss_dssp EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCEECSCSSBC
T ss_pred eeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEECCCCCeE
Confidence 0 01233332 22322222222443332 3455667778888888887652 22211111233
Q ss_pred EEEEEeecCCccchhHHHHHHHHHHHCCcEE--eec----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLL--RPI----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 364 ~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~--~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
..+.+. .+. . +.++++.|.++||.+ .++ .+.+|++++..+|++++++++++|++++
T Consensus 376 ~~~~~~-~~~--~---~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 376 NEFALA-LPK--D---PEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp SEEEEE-CSS--C---HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEEe-CCC--C---HHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 323333 211 1 367999999999998 443 4799999999999999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=146.67 Aligned_cols=315 Identities=9% Similarity=-0.032 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHhhccccccC----CC----CCHHHHHHHHHHHhhcCCC-CCeEEE-cCCchHHHHHHHHHHHHhhhh
Q psy14484 51 SNSYINKALKNQLNKLEHVMLS----NL----THKPVIKLSEKLSSLTQYK-LGHCFY-GSDGASAVEVALKMSFHYWYN 120 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~----~~----~~~~~~~l~~~l~~~~~~~-~~~v~~-~~sgteA~~~al~~~~~~~~~ 120 (430)
-+|+|.+++.+.+.+....+.+ .. .....++.++.+++++++. ..+|+| |+|||+|++.+++.+. .
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~--- 91 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-L--- 91 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-C---
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-C---
Confidence 4799999999877543211111 11 1256678888999999764 347888 9999999999998664 1
Q ss_pred cCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCC-CCCCChhHHHHHHHHHHHHHHHhCC
Q psy14484 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDLEILLKKNH 199 (430)
Q Consensus 121 ~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~~ 199 (430)
++...++.. +.+++..... ......++..++.+..... . +++. + ++
T Consensus 92 ----~~~~~~i~~-~~~~~~~~~~-----------a~~~G~~v~~~~~~~~g~~~~-----------~~~~-~--l~--- 138 (361)
T 3m5u_A 92 ----NGVCEYANT-GVWTKKAIKE-----------AQILGVNVKTVASSEESNFDH-----------IPRV-E--FS--- 138 (361)
T ss_dssp ----SSCEEEEEC-SHHHHHHHHH-----------HHHTTCCEEEEEECTTTTSCS-----------CCCC-C--CC---
T ss_pred ----CCeEEEEeC-CHHHHHHHHH-----------HHHcCCceEEEecccCcCCCc-----------CChh-h--cC---
Confidence 332222222 2333311100 0111234455554432210 0 2223 2 43
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 277 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~ 277 (430)
+++++|.+.. +.+.+|.+.+. +++ +|+++++|.+|+ +|.. .+.++ ..|++++| |.+| .
T Consensus 139 ~~t~lv~~~~-~e~~tG~~~~~---------i~~-~~~~~~vD~~q~-~g~~--~id~~----~~d~~~~s~~K~~g-p- 198 (361)
T 3m5u_A 139 DNADYAYICS-NNTIYGTQYQN---------YPK-TKTPLIVDASSD-FFSR--KVDFS----NIALFYGGVQKNAG-I- 198 (361)
T ss_dssp TTSSEEEEES-EETTTTEECSS---------CCC-CSSCEEEECGGG-TTSS--CCCCT----TEEEEEEETTTTSS-C-
T ss_pred CCCCEEEEeC-CCCCcceeCCc---------ccc-cCCEEEEEcccc-cCCC--CCCcc----cCCEEEEechhccC-C-
Confidence 4567777766 66667977662 344 499999999998 5432 12222 25788887 8884 2
Q ss_pred cccEEEEEcHHHHHhhhccCCcccc------cccCCC-CCCHHHHHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHH
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNINIF------LHSHSY-SGNPLACCAALATLEIFNKD----NILQRISQDMKKITKALT 346 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~~~------~~~~t~-~~~~~~~~aa~~~l~~~~~~----~~~~~~~~~~~~l~~~l~ 346 (430)
..+|++++++++.+.+.+...+..+ ....++ +++..+..+..++++++.+. +..++.+++.++++++|+
T Consensus 199 ~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~ 278 (361)
T 3m5u_A 199 SGLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID 278 (361)
T ss_dssp TTCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999987665430000000 012222 34566666777888877654 345677888888888887
Q ss_pred chhcC-CCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 347 SLITH-PKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 347 ~l~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
++... ...... .....++.|.++ +... . ...+...|.++||.+.++. +.+|+++...+|++||+.+++.|
T Consensus 279 ~~~g~~~~~~~~~~rs~~ivsf~~~-~~~~--~--~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al 353 (361)
T 3m5u_A 279 LSNGFYKGHADKKDRSLMNVSFNIA-KNKD--L--EPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFM 353 (361)
T ss_dssp TSTTSEEESSCGGGBCSSEEEEEES-SCTT--H--HHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HCCCeeeccCCHHHcCCeEEEEECC-Cchh--h--hHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHH
Confidence 76321 111111 112346667666 3111 1 1357788889999987652 56999999999999999999999
Q ss_pred HHHHHH
Q psy14484 422 FQTFNE 427 (430)
Q Consensus 422 ~~~l~~ 427 (430)
+++.++
T Consensus 354 ~~~~~~ 359 (361)
T 3m5u_A 354 KEFQGK 359 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-16 Score=147.80 Aligned_cols=293 Identities=8% Similarity=0.013 Sum_probs=171.7
Q ss_pred CCHHHHHHHHHHHh-h--ccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEE---cCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 51 SNSYINKALKNQLN-K--LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 51 ~~p~v~~a~~~~~~-~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~---~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
++++|.+++.+... . +.......+......++++.++++++ .+..++ ++||++|+..++..+..
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all~-------- 99 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK--TEAALVRPQIISGTHAISTVLFGILR-------- 99 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTSCSHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC--CCcEEEECCCccHHHHHHHHHHHhcC--------
Confidence 34677777776531 1 11112224556678899999999994 455555 89999999999987754
Q ss_pred CCcEEEEEc-CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 125 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 125 ~~~~vl~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++.|++.+ +.|.+..... ...+. ....+........+++...+... |+++++++++ ++++
T Consensus 100 ~GD~Vl~~~~~~y~~~~~~~-~~~g~--~~~~l~~~G~~~~~v~~~~~g~~------------d~e~l~~ai~---~~tk 161 (409)
T 3jzl_A 100 PDDELLYITGQPYDTLEEIV-GIRKQ--GQGSLKDFHIGYSSVPLLENGDV------------DFPRIAKKMT---PKTK 161 (409)
T ss_dssp TTCEEEECSSSCCTTHHHHH-TSSSS--SSSCTGGGTCEEEECCCCTTSCC------------CHHHHHHHCC---TTEE
T ss_pred CCCEEEEeCCCCcHhHHHHH-hcccc--hhhHHHHcCCEEEEeCCCCCCCc------------CHHHHHHhcc---CCCe
Confidence 567888887 7776653211 00000 00001111223344444322222 8899999885 4688
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC
Q psy14484 204 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 276 (430)
Q Consensus 204 ~vi~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG 276 (430)
+|++++. ++|++|.+.+ +++|.++|++ +|+++|+||+|..+...... .....|++ +++|.++|+
T Consensus 162 lV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p-----~~~g~Div~~S~sK~lgg~ 232 (409)
T 3jzl_A 162 MIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP-----PEVGADIIAGSLIKNPGGG 232 (409)
T ss_dssp EEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS-----GGGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc-----cccCCeEEEECccccCCcc
Confidence 8888752 4566676655 9999999999 99999999998743211111 12235666 678999875
Q ss_pred ccc-cEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCee
Q psy14484 277 YLP-LSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII 355 (430)
Q Consensus 277 ~~~-ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 355 (430)
..+ .|++++++++++.+... ......+.+.+..+..+.++...++.+ +...++..+++.++.+.|+++. .....
T Consensus 233 ~~~~GG~v~~~~~li~~l~~~--~~~~~~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g-~~v~p 307 (409)
T 3jzl_A 233 LAKTGGYIAGKEALVDLCGYR--LTTPGIGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFG-VEADP 307 (409)
T ss_dssp TCSSCEEEEECHHHHHHHHHH--HSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CEEES
T ss_pred CCceEEEEEeCHHHHHHHHHH--hccccccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCC-CcccC
Confidence 333 58899999998877640 000001111222221122333344332 3456667778888888888762 11100
Q ss_pred --eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 356 --NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 356 --~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
..+....++.+.+. + .+.+.++++.|.+..
T Consensus 308 ~~~~~~~~~i~~i~l~-~-----~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 308 VWDAPRTDLIQSVSFH-N-----KEKMVAFAQAIQAAS 339 (409)
T ss_dssp CTTSCCSSSCCEEECS-C-----HHHHHHHHHHHHHTS
T ss_pred CCCCCCccEEEEEEeC-C-----HHHHHHHHHHHHhcC
Confidence 11122336666665 3 222568899988774
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=156.09 Aligned_cols=327 Identities=9% Similarity=0.010 Sum_probs=189.4
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhcccccc--------CCCCCHHHHHHHHHHHhhcCCCC-CeEEE-cCCc
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML--------SNLTHKPVIKLSEKLSSLTQYKL-GHCFY-GSDG 103 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--------~~~~~~~~~~l~~~l~~~~~~~~-~~v~~-~~sg 103 (430)
+.|+|..+.. .-+|+|++++.+.+.+....+. ........++.++.+++++++.. .+|+| ++||
T Consensus 27 ~~yl~~agpt------~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGPA------MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSSC------CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCCC------CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 4677754431 2489999999877644221111 11123455788889999998643 47888 6999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChh
Q psy14484 104 ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSAN 181 (430)
Q Consensus 104 teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 181 (430)
|+|++.+++.+.. +++++++...+.+++...... .... ++..++.+ ......
T Consensus 101 T~a~n~ai~~l~~--------~gd~v~~~~~~~~~~~~~~~a-----------~~~G-~v~~v~~~~~~~G~~~------ 154 (386)
T 3qm2_A 101 RGQFAGVPLNLLG--------DKTTADYVDAGYWAASAIKEA-----------KKYC-APQIIDAKITVDGKRA------ 154 (386)
T ss_dssp THHHHHHHHHHCT--------TCCEEEEEESSHHHHHHHHHH-----------TTTS-EEEEEECEEEETTEEE------
T ss_pred hHHHHHHHHhccC--------CCCeEEEEeCCHHHHHHHHHH-----------HHhC-CeEEEecCcccCCCCC------
Confidence 9999999987653 445665555444443211111 0112 23444443 111100
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcc-cCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC
Q psy14484 182 EIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMI-MYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260 (430)
Q Consensus 182 ~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~-~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~ 260 (430)
+++++++.++ +++++|.+.. +.+.+|.+ .| +++|. +|+++++|.+|+ +|.. .+.++.+
T Consensus 155 -----~~~~~~~~l~---~~t~lV~~~h-~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~g~~--pidv~~~ 213 (386)
T 3qm2_A 155 -----VKPMREWQLS---DNAAYLHYCP-NETIDGIAIDE----TPDFG-----PEVVVTADFSST-ILSA--PLDVSRY 213 (386)
T ss_dssp -----ECCGGGCCCC---TTCSCEEECS-EETTTTEECCC----CCCCC-----TTCCEEEECTTT-TTSS--CCCGGGC
T ss_pred -----CchHHHhhcC---CCCcEEEEEC-CcCCcCEecCc----hhhhc-----CCCEEEEEcccc-cCCC--CCCcccc
Confidence 3445555553 5677787777 66777985 65 55553 799999999997 5432 2334433
Q ss_pred CCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccc------cccCCC-CCCHHHHHHHHHHHHHHhh----
Q psy14484 261 EIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIF------LHSHSY-SGNPLACCAALATLEIFNK---- 327 (430)
Q Consensus 261 ~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~------~~~~t~-~~~~~~~~aa~~~l~~~~~---- 327 (430)
+ ++++| |.+| . ..+|++++++++.+.+.+. .+..+ .....+ +.+..+..+..++++.+.+
T Consensus 214 ~----~~~~s~hK~lG-P-~G~g~l~v~~~~~~~~~~~-~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~ 286 (386)
T 3qm2_A 214 G----VIYAGAQKNIG-P-AGLTLVIVREDLLGKAHES-CPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGV 286 (386)
T ss_dssp S----EEEEETTTTTC-C-TTEEEEEEEGGGCSCCCTT-SCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHH
T ss_pred C----EEEEecccccC-C-CccEEEEECHHHHhhhccc-CCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 3 44455 8884 2 4699999999875443320 00000 001111 2344455555566665543
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcC--CCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEE
Q psy14484 328 DNILQRISQDMKKITKALTSLITH--PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVY 402 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR 402 (430)
++..++.+++.+++++.|+++ .. +..........++.|.++ +.. . ...+...|.++||.+..+. +.+|
T Consensus 287 ~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~-~~~---~--~~~~~~~L~~~gI~~~~g~~~~~~iR 359 (386)
T 3qm2_A 287 AAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLA-DNT---L--DKVFLEESFAAGLHALKGHRVVGGMR 359 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEES-SGG---G--HHHHHHHHHHTTEECCBCCTTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECC-Ccc---c--cHHHHHHHHHCCCEEeCCCCCcCeEE
Confidence 345677788888888888876 21 101111112346667665 311 1 1356777889999987652 4699
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++...+|++||+.+++.|+++.++
T Consensus 360 iS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 360 ASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=155.24 Aligned_cols=306 Identities=11% Similarity=0.015 Sum_probs=174.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 76 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
.....++++.++++++.+ ..+++++|+++|+.+++.+++. +++.||+..++|+......+..++.
T Consensus 172 ~~~i~e~e~~lA~~~gae-~~i~v~nGtt~an~~ai~al~~--------pGD~VLv~~~~H~S~~~~~~~l~Ga------ 236 (730)
T 1c4k_A 172 EGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALVS--------NGDLVLFDRNNHKSVYNSALAMAGG------ 236 (730)
T ss_dssp BTHHHHHHHHHHHHTTCS-EEEEESSHHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHTTTTCC------
T ss_pred hHHHHHHHHHHHHHHCCC-cEEEECCHHHHHHHHHHHHhcC--------CCCEEEEcCCchHHHHHHHHHHCCC------
Confidence 356789999999999643 3466667777999999988764 5678888877765443221222221
Q ss_pred hhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHH-----HHHHHhC-CC---C----eEEEEEccccccCCCcccCC
Q psy14484 156 YTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDL-----EILLKKN-HN---K----IAAIIIEPLVQCAGGMIMYD 221 (430)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~-~~---~----~~~vi~ep~v~~~~G~~~~~ 221 (430)
..++++.. +.+..... .|+++| ++++++. ++ . ..+++++| +.+|.+.+
T Consensus 237 ------~~v~v~~~~~~~~i~g~--------id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p---n~~G~v~d- 298 (730)
T 1c4k_A 237 ------RPVYLQTNRNPYGFIGG--------IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG---TYDGTIYN- 298 (730)
T ss_dssp ------EEEEECEEECTTCCEEE--------ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB---CTTSEEEC-
T ss_pred ------EEEEEeCCccccCccCC--------CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC---CCCCeecC-
Confidence 11122111 00000000 034444 8888643 10 1 23444455 35787777
Q ss_pred hHHHHHHHHHHHhcCCEEEEeccccC-CCCccc---cccc--ccCCCC-Cc-ee--eeecccCCCcccc-EEEEEcHHHH
Q psy14484 222 SIYLKLVREICNNYNIHLIADEIAVG-CGRTGK---FFAC--EHAEIW-PD-FL--CLSKGITGGYLPL-SLVMTTDKIY 290 (430)
Q Consensus 222 ~~~l~~l~~l~~~~gi~li~DEv~~g-~g~~g~---~~~~--~~~~~~-~d-~~--~~sK~l~gG~~~i-g~~~~~~~~~ 290 (430)
+++|.++|+++|+++|+||+|.+ +...+. ..+. +.++.. ++ ++ +++|+++| .+. |+++.+++.+
T Consensus 299 ---l~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g--~~~gg~I~v~~~~l 373 (730)
T 1c4k_A 299 ---AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAG--FSQTSQIHKKDSHI 373 (730)
T ss_dssp ---HHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSC--CTTCEEEEEECGGG
T ss_pred ---HHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCC--CCCEEEEEecchhh
Confidence 99999999999999999999863 111111 0111 122332 11 44 56798875 343 5565554322
Q ss_pred ---------HhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHc-hhcCCCeee-
Q psy14484 291 ---------NSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTS-LITHPKIIN- 356 (430)
Q Consensus 291 ---------~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~-l~~~~~~~~- 356 (430)
..+.. ......+.+++...+++..++++++.. .++.+++.++.+++++.|++ +..+..+..
T Consensus 374 ~g~~~~i~~~~~~~-----~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~ 448 (730)
T 1c4k_A 374 KGQLRYCDHKHFNN-----SFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPP 448 (730)
T ss_dssp TTSTTCCCHHHHHH-----HHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCS
T ss_pred cCcccccCHHHHHH-----HHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEcccc
Confidence 11111 001112234455555555556665433 45677888889999999976 322211100
Q ss_pred E--------------------------------e--ecce-E-----EEEEEeec--------CCccchhHHHHHHHHHH
Q psy14484 357 F--------------------------------R--QKGM-I-----WAFDVIIE--------DPEQIETFSKKFFVAAL 388 (430)
Q Consensus 357 ~--------------------------------~--~~g~-~-----~~~~~~~~--------~~~~~~~~a~~~~~~l~ 388 (430)
. . ..+. + +.+..+ . ...... +..+.+.|.
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~p-g~~~~~g~~~~~g~~--~~~l~~~L~ 525 (730)
T 1c4k_A 449 VVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTP-GINPETGDYEDFGVP--ATIVANYLR 525 (730)
T ss_dssp EETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECS-SEETTTTEECSSCCC--HHHHHHHHH
T ss_pred ccccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeC-CcccccccccccCCC--HHHHHHHHH
Confidence 0 0 0111 1 233331 1 000011 467899999
Q ss_pred HCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 389 KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 389 ~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++||.+...+ ..+|++++..+|+++++.++++|+++.++
T Consensus 526 e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 526 DHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp HTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999987754 78999999999999999999999988654
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-15 Score=143.53 Aligned_cols=293 Identities=11% Similarity=0.054 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHh---hccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEE---cCCchHHHHHHHHHHHHhhhhcCCCCC
Q psy14484 53 SYINKALKNQLN---KLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFLNK 126 (430)
Q Consensus 53 p~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~---~~sgteA~~~al~~~~~~~~~~g~~~~ 126 (430)
++|++++.+... .+.......+......++++.++++++ .+..++ ++||++|+..++..++. ++
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g--~e~alv~p~~~sGt~Ai~~al~all~--------pG 115 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFN--TESALVRPHFVNGTHALGAALFGNLR--------PG 115 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHHCC--------TT
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhC--CcceEEeCCCccHHHHHHHHHHHHhC--------CC
Confidence 567777665421 111111123455678899999999995 444455 89999999999887754 66
Q ss_pred cEEEEEc-CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEE
Q psy14484 127 KKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAI 205 (430)
Q Consensus 127 ~~vl~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 205 (430)
+.|++.+ +.|++..... ...... ....+.........++...+... |+++++++++++ +++++|
T Consensus 116 D~Vl~~~~~~y~~~~~~~-g~~~~~-~~~~l~~~G~~~~~v~~~~~g~~------------D~e~l~~~l~~~-~~tklV 180 (427)
T 3i16_A 116 NTMLSVCGEPYDTLHDVI-GITENS-NMGSLKEFGINYKQVDLKEDGKP------------NLEEIEKVLKED-ESITLV 180 (427)
T ss_dssp CEEEESSSSCCGGGHHHH-TCSCCC-SSCCTGGGTCEEEECCCCTTSSC------------CHHHHHHHHHTC-TTEEEE
T ss_pred CEEEEeCCCccHHHHHHH-hccccc-hHHHHHHcCCEEEEecCccCCCc------------CHHHHHHHhhCC-CCCEEE
Confidence 8888887 7777653221 000000 00001111223344444322222 889999999742 467888
Q ss_pred EEccc---cccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCc-
Q psy14484 206 IIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY- 277 (430)
Q Consensus 206 i~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~- 277 (430)
++++. ++|++|.+.+ +++|.++|++ +|+++|+||+|..+....... ....|++ +++|.++|+.
T Consensus 181 ~i~~s~~~p~nptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~lgg~g~ 251 (427)
T 3i16_A 181 HIQRSTGYGWRRALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT-----DVGADLIAGSLIKNIGGGIA 251 (427)
T ss_dssp EEECSCCSSSSCCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG-----GGTCSEEEEETTSGGGTTTC
T ss_pred EEEcCCCCCCCCcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc-----ccCCeEEEecCcccCCCCCC
Confidence 88762 3456666655 9999999999 999999999987442121111 1234655 6789998753
Q ss_pred cccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc--CCCe
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA-CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT--HPKI 354 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~ 354 (430)
...|++++++++++.+... ......+...+. .+. +..+...++.+ +...++..+++.++.+.|+++.. .|.
T Consensus 252 ~~gG~i~~~~~li~~l~~~--~~~~~~g~~~~~-~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~V~p~- 325 (427)
T 3i16_A 252 PTGGYLAGTKDCIEKTSYR--LTVPGIGGECGS-TFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFEVMPK- 325 (427)
T ss_dssp CSCEEEEECHHHHHHHHHH--HSCTTTGGGCCC-CTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC-
T ss_pred ceEEEEEECHHHHHHHHHh--cccCccCccCCc-cHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCeecCC-
Confidence 3468899999998877640 000001111111 011 22222333322 34566777788888888877621 111
Q ss_pred eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 355 INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
...+....++.+.+. + .+.+.+|++.|....
T Consensus 326 ~~~~~~~~i~~i~l~-~-----~~~~~~f~~~l~~~~ 356 (427)
T 3i16_A 326 YDEKRSDIIQSIKFN-D-----KDKLIEFCKGIQTGS 356 (427)
T ss_dssp TTSCCSSSCEEEECS-S-----HHHHHHHHHHHHHTC
T ss_pred CCCCCccEEEEEEEC-C-----HHHHHHHHHHHhhcC
Confidence 001122236677665 3 222568899988763
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-15 Score=155.98 Aligned_cols=310 Identities=8% Similarity=0.012 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
....++++.++++++.+ +.+++++|+++|+..++.+++. +++.|++..++|+..... +...+
T Consensus 205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~--------~GD~Vlv~~~~h~s~~~~-~~~~G-------- 266 (755)
T 2vyc_A 205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMT--------DNDVVVVDRNCHKSIEQG-LMLTG-------- 266 (755)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCC--------TTCEEEEESSCCHHHHHH-HHHHC--------
T ss_pred cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcC--------CCCEEEECCCchHHHHHH-HHHcC--------
Confidence 45567788888888633 3566777778999999998764 667888888776543322 22122
Q ss_pred hccCCCeeEeCCCCC-CCCCCCCChhHHHHHHHHHHHHHHHhCCCC-------e-EEEEEccccccCCCcccCChHHHHH
Q psy14484 157 TSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEILLKKNHNK-------I-AAIIIEPLVQCAGGMIMYDSIYLKL 227 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-------~-~~vi~ep~v~~~~G~~~~~~~~l~~ 227 (430)
...++++...+ +......+.+. .|+++|++++++++.. + .+++++| +.+|.+.+ +++
T Consensus 267 ----~~~v~v~~~~~~~g~~g~i~~~~---~d~e~le~~i~~~~~~k~~~~~~~klvil~~p---n~~G~v~d----l~~ 332 (755)
T 2vyc_A 267 ----AKPVYMVPSRNRYGIIGPIYPQE---MQPETLQKKISESPLTKDKAGQKPSYCVVTNC---TYDGVCYN----AKE 332 (755)
T ss_dssp ----CEEEEECCCBCTTSCBCCCCGGG---GSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS---CTTSEEEC----HHH
T ss_pred ----CEEEEEeCCCCccccccccCcCC---CCHHHHHHHHHhCccccccccCCCeEEEEECC---CCCceecC----HHH
Confidence 11223332211 00000000011 1678999999764221 1 3455555 45787777 999
Q ss_pred HHHHHHhcCCEEEEeccccCCCCccccc-cccc-CC--CC---Cc---eeeeecccCCCccc-cEEEEEcHH--HH--Hh
Q psy14484 228 VREICNNYNIHLIADEIAVGCGRTGKFF-ACEH-AE--IW---PD---FLCLSKGITGGYLP-LSLVMTTDK--IY--NS 292 (430)
Q Consensus 228 l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~-~~--~~---~d---~~~~sK~l~gG~~~-ig~~~~~~~--~~--~~ 292 (430)
|.++|++||+++|+||+|.+....+..+ .... .+ .. +. +.+++|+++| .+ .|+++++++ .. ..
T Consensus 333 I~~ia~~~~~~livDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g--~~~g~~i~~~~~~~~i~~~~ 410 (755)
T 2vyc_A 333 AQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA--LSQASYIHVREGRGAINFSR 410 (755)
T ss_dssp HHHHHTTTCSEEEEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSC--CTTCEEEEEECCBTCCCHHH
T ss_pred HHHHHHHcCCEEEEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccC--cCCeeeeeecCcccccCHHH
Confidence 9999999999999999997431111111 0111 22 11 11 2356798876 33 566767554 11 12
Q ss_pred hhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhc---------CCCee--eEe
Q psy14484 293 IYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLIT---------HPKII--NFR 358 (430)
Q Consensus 293 ~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~---------~~~~~--~~~ 358 (430)
+.. ......+.+++.+.+++..++++.+.. +++.++..++.++++++|+++.. +..+. .+.
T Consensus 411 ~~~-----~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~ 485 (755)
T 2vyc_A 411 FNQ-----AYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVT 485 (755)
T ss_dssp HHH-----HHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEE
T ss_pred HHH-----HHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcc
Confidence 221 011122334566666666667776643 35788888999999999987633 11100 010
Q ss_pred e---------------------------------------cc------eEEEEEEeecCCccc-----hhHHHHHHHHHH
Q psy14484 359 Q---------------------------------------KG------MIWAFDVIIEDPEQI-----ETFSKKFFVAAL 388 (430)
Q Consensus 359 ~---------------------------------------~g------~~~~~~~~~~~~~~~-----~~~a~~~~~~l~ 388 (430)
+ .| ..+.+... ....+. .--+..+.+.|.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~-~~~~~G~~~~~g~~~~~l~~~L~ 564 (755)
T 2vyc_A 486 DPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAP-GMGEDGELEETGVPAALVTAWLG 564 (755)
T ss_dssp CTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECS-CBCTTSSBCSSCCCHHHHHHHHH
T ss_pred ccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcC-CCCCCCCccccCCcHHHHHHHHH
Confidence 0 11 22333332 100000 000357888898
Q ss_pred HCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 389 KNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 389 ~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
++||.+...+ +.+|+.+++..|+++++.++++|.+..+
T Consensus 565 ~~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~ 603 (755)
T 2vyc_A 565 RHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKR 603 (755)
T ss_dssp TTTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHH
T ss_pred HCCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 8999887554 7899999999999999999999988764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-14 Score=140.77 Aligned_cols=294 Identities=11% Similarity=0.033 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHhhccc---cccCCCCCHHHHHHHHHHHhhcCCCCCeEEE---cCCchHHHHHHHHHHHHhhhhcCCC
Q psy14484 51 SNSYINKALKNQLNKLEH---VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFY---GSDGASAVEVALKMSFHYWYNKGFL 124 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~---~~sgteA~~~al~~~~~~~~~~g~~ 124 (430)
+.++|.+++.+....-.+ .....+.....+++++.++++++ .+..++ ++||++|+..++..+..
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~g--~e~alv~p~~~sGt~A~~~al~all~-------- 114 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIFN--TESAFVRPHFVNGTHAIGAALFGNLR-------- 114 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHT--CSEEEEETTCCSHHHHHHHHHHHTCC--------
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHhC--CCceEEeCCCCcHHHHHHHHHHHhcC--------
Confidence 346777777764321111 11123445667889999999994 455566 89999999999887754
Q ss_pred CCcEEEEEc-CCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeE
Q psy14484 125 NKKKFICLQ-NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIA 203 (430)
Q Consensus 125 ~~~~vl~~~-~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~ 203 (430)
+++.|++.+ +.|++..... ..... .+...+.........++. ++... |+++++++++++ ++++
T Consensus 115 pGD~Vl~~~~~~y~~~~~~~-g~~~~-~~~~~l~~~G~~~~~v~~-~~~~~------------d~e~l~~~i~~~-~~tk 178 (427)
T 3hvy_A 115 PNDTMMSICGMPYDTLHDII-GMDDS-KKVGSLREYGVKYKMVDL-KDGKV------------DINTVKEELKKD-DSIK 178 (427)
T ss_dssp TTCEEEECSSSCCGGGHHHH-TCCTT-CCSCCTGGGTCEEEECCC-BTTBC------------CHHHHHHHHHHC-TTEE
T ss_pred CCCEEEEeCCCCchhHHHHh-ccccc-hhhhHHHHcCCEEEEecC-CCCCc------------CHHHHHHHhhCC-CCCE
Confidence 678899888 7887653111 00000 000001111223334443 22222 889999999742 4688
Q ss_pred EEEEccc---cccCCCcccCChHHHHHHHHHHHh--cCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCC
Q psy14484 204 AIIIEPL---VQCAGGMIMYDSIYLKLVREICNN--YNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGG 276 (430)
Q Consensus 204 ~vi~ep~---v~~~~G~~~~~~~~l~~l~~l~~~--~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG 276 (430)
+|++++. ++|++|.+.+ +++|.++|++ +|+++|+||+|..+....... ....|++ +++|.++|+
T Consensus 179 lV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~lgg~ 249 (427)
T 3hvy_A 179 LIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT-----DVGADIIAGSLIKNIGGG 249 (427)
T ss_dssp EEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG-----GGTCSEEEEETTSGGGTT
T ss_pred EEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc-----ccCCeEEEECCccccccc
Confidence 8888762 3455565544 9999999999 899999999987442121111 1234655 678999875
Q ss_pred cc-ccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCee
Q psy14484 277 YL-PLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII 355 (430)
Q Consensus 277 ~~-~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 355 (430)
.. ..|++++++++++.+... ......+.+.+..+..+..+...++.+ +...++..+++.++.+.|+++. .....
T Consensus 250 g~~~GG~i~~~~~li~~l~~~--~~~~~~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g-~~V~p 324 (427)
T 3hvy_A 250 IATTGGYIAGKEEYVTQATFR--VTVPGIGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAG-FDVLP 324 (427)
T ss_dssp TCCSCEEEEECHHHHHHHHHH--HSCTTTGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CEEES
T ss_pred ccceEEEEEECHHHHHHHHHH--hhcCCcccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCC-CeecC
Confidence 32 357889999998877640 000001111111111122233333322 3456677778888888887762 11100
Q ss_pred --eEeecceEEEEEEeecCCccchhHHHHHHHHHHHC
Q psy14484 356 --NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN 390 (430)
Q Consensus 356 --~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 390 (430)
..+...+++.+.+. + .+.+.++++.|...
T Consensus 325 ~~~~~~~~li~~~~l~-~-----~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 325 KYNDKRTDIIQAIKFN-D-----EKKLIDFIKGIQTA 355 (427)
T ss_dssp CTTSCCSSSEEEEECS-S-----HHHHHHHHHHHHHT
T ss_pred CCCCCCceEEEEEeCC-C-----HHHHHHHHHHhccc
Confidence 11122236666665 3 22256788888775
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=123.30 Aligned_cols=287 Identities=12% Similarity=0.123 Sum_probs=170.5
Q ss_pred CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC---CCC
Q psy14484 95 GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT---PDS 171 (430)
Q Consensus 95 ~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 171 (430)
...+++|++|.++.+++.+++... .|+.++||+ +..-|-+..-++.+.+... ++++. ++.
T Consensus 135 ~~~flVnGsTgg~lamilaa~r~~----rpg~d~VIv-pRn~HKSv~kAliL~Gl~P------------v~V~p~~d~~~ 197 (501)
T 3hl2_A 135 ANCFVVPMATGMSLTLCFLTLRHK----RPKAKYIIW-PRIDQKSCFKSMITAGFEP------------VVIENVLEGDE 197 (501)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHH----CTTCCEEEE-ECCCCHHHHHHHHHTTCEE------------EEECEEEETTE
T ss_pred CcEEEECcHHHHHHHHHHHHcCcc----cCCCCEEEE-ecchHHHHHHHHHHcCCeE------------EEEeeeecccc
Confidence 358888899888888777766531 123356665 7888887766666555211 12211 111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCC
Q psy14484 172 RNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250 (430)
Q Consensus 172 ~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~ 250 (430)
.. .|++++|++|++++ +.+.+|+.++ ...-++...+ +++|.++|++||+++||||+|...-.
T Consensus 198 ~~------------id~e~le~aI~e~ga~~i~~V~~Tt-t~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~ 260 (501)
T 3hl2_A 198 LR------------TDLKAVEAKVQELGPDCILCIHSTT-SCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSS 260 (501)
T ss_dssp EE------------ECHHHHHHHHHHHCGGGEEEEEEEC-SCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCH
T ss_pred cC------------CCHHHHHHHHHhcCCCcEEEEEecC-CCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhh
Confidence 11 18899999999874 5677777766 4443444455 99999999999999999999864421
Q ss_pred cccccccccCCC-CCceeeee--cccCCCccccEE--EEE-cHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 251 TGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSL--VMT-TDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 251 ~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~--~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
....+..+.+.. ..|+++.| |.+- .|+|. ++. .+++++.+.. .+.++.++.|. +..+.++..
T Consensus 261 ~~~~lp~sA~~~GrAD~vVqS~HK~ll---vpIGG~ii~~~d~e~l~~~~~-------~yPGr~S~Sps--ldl~~tLL~ 328 (501)
T 3hl2_A 261 KCMHLIQQGARVGRIDAFVQSLDKNFM---VPVGGAIIAGFNDSFIQEISK-------MYPGRASASPS--LDVLITLLS 328 (501)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEHHHHHC---CCSSCEEEEESCHHHHHHHHH-------TSCSCBCSHHH--HHHHHHHHH
T ss_pred hhhhhHHHHHhcCCCcEEEecccccce---eecCceEEEeCCHHHHHHHHH-------hCCCCCCCcHH--HHHHHHHHH
Confidence 111111122223 37999888 5432 34432 333 4566666544 12233333333 323344433
Q ss_pred Hhh---cCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCc---EEee
Q psy14484 325 FNK---DNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL---LLRP 396 (430)
Q Consensus 325 ~~~---~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv---~~~~ 396 (430)
+.. .++.++..++.++|++.|+++ ..++ .+...+....-+++.+. ............|...|..++| -+.+
T Consensus 329 lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~-~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~ 407 (501)
T 3hl2_A 329 LGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLK-TLDEHRDKAVTQLGSMLFTRQVSGARVVP 407 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECT-TSCTTTSCHHHHHHHHHHHTTCCSCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecc-cccccccccHHHHHHHHHhcCCCcceeec
Confidence 333 345566778899999999888 3232 12233334444555554 3211111112456666766644 2322
Q ss_pred c----------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 397 I----------------------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 397 ~----------------------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
. ..++-+.....++++||+.++++|++++.++
T Consensus 408 ~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~ 461 (501)
T 3hl2_A 408 LGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAV 461 (501)
T ss_dssp TTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 1467788888899999999999999998754
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-13 Score=136.54 Aligned_cols=308 Identities=8% Similarity=0.038 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcCCc-hHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGSDG-ASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~sg-teA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
....++++.+++++ +.++.+|+++| +.||.+++.+++. +++.|++..++|... ..++..++..
T Consensus 195 g~i~eaE~~lA~~f--Ga~~a~~v~nGts~An~~ai~al~~--------pGD~VLv~r~~H~S~-~~~l~lsGa~----- 258 (715)
T 3n75_A 195 GPHKEAEQYIARVF--NADRSYMVTNGTSTANKIVGMYSAP--------AGSTILIDRNCHKSL-THLMMMSDVT----- 258 (715)
T ss_dssp THHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHHCC--------TTCEEEEESSCCHHH-HHHHHHSCCE-----
T ss_pred HHHHHHHHHHHHHh--CCCCceEECcHHHHHHHHHHHHhCC--------CCCEEEECCCccHHH-HHHHHHcCCE-----
Confidence 45667888999999 44666655555 6999988887764 667788776665433 3333333311
Q ss_pred hhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhCCCC--e-EEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 156 YTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKNHNK--I-AAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~--~-~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.++++... .+....+.+..++ |+++|+++++++++. + .+++++| +..|.+.+ +++|.++
T Consensus 259 -------pv~v~~~~~~~gi~~~i~~~~~---d~e~Le~~l~~~~~~k~p~~vivt~p---n~~G~v~d----l~~I~el 321 (715)
T 3n75_A 259 -------PIYFRPTRNAYGILGGIPQSEF---QHATIAKRVKETPNATWPVHAVITNS---TYDGLLYN----TDFIKKT 321 (715)
T ss_dssp -------EEEECCCBCTTCCBCCCCGGGG---SHHHHHHHHHHSTTCCSCSEEEEESS---CTTSEEEC----HHHHHHH
T ss_pred -------EEEEeccccccccccCcccccC---CHHHHHHHHhhCcCccCceEEEEECC---CCCCccCC----HHHHHHH
Confidence 12222111 1110000111111 689999999876422 1 3444444 67887777 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccc-cccC--CCCCcee-----eeecccCCCccccEEEEEcHHHH-HhhhccCCcccc
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFA-CEHA--EIWPDFL-----CLSKGITGGYLPLSLVMTTDKIY-NSIYYKNNINIF 302 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~-~~~~--~~~~d~~-----~~sK~l~gG~~~ig~~~~~~~~~-~~~~~~~~~~~~ 302 (430)
|++++ +|+||+|.+...-+..+. .... +..+|++ +++|++++- ...|++.++.++. +.+.. ..
T Consensus 322 a~~~~--livDEAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gl-tqgs~i~v~~~i~~~~~~~-----~~ 393 (715)
T 3n75_A 322 LDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF-SQASMIHVKGDVNEETFNE-----AY 393 (715)
T ss_dssp CCCSE--EEEECTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCC-TTCEEEEEESCCCHHHHHH-----HH
T ss_pred hCcCc--EEEccccccccccCCccccccccccCcCCCEEEEEEecccccccCC-CCeeEEEeCchhhHHHHHH-----HH
Confidence 98774 799999973311122111 1111 2225643 577998761 1346777765431 12221 11
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhc-CCC-----ee--eEe-------------
Q psy14484 303 LHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLIT-HPK-----II--NFR------------- 358 (430)
Q Consensus 303 ~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~-~~~-----~~--~~~------------- 358 (430)
....|.+++++.+++..+++++++ .+++.+++.++.+++++.|+++.. .+. +. .+.
T Consensus 394 ~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 473 (715)
T 3n75_A 394 MMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTW 473 (715)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCT
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccc
Confidence 123344567777777777887764 256789999999999999987732 100 00 000
Q ss_pred ------ecc------eEEEEEEeecCCccc----hh-HHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHH
Q psy14484 359 ------QKG------MIWAFDVIIEDPEQI----ET-FSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSA 420 (430)
Q Consensus 359 ------~~g------~~~~~~~~~~~~~~~----~~-~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~ 420 (430)
+.+ +=+.+... .-..+. .. .+..+.+.|.++||.+.-+ ...+-+.++...|+++++.++++
T Consensus 474 ~gf~~~~~~~~~~Dp~Kl~i~~~-~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 474 HGFKNIDNEHMYLDPIKVTLLTP-GMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp TCCTTCCSSSEEECTTEEEEECS-CBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHH
T ss_pred ccccccccCcccCCCeEEEEEcC-CCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 000 11122221 100000 00 0356788888899988765 46777888889999999999999
Q ss_pred HHHHHH
Q psy14484 421 IFQTFN 426 (430)
Q Consensus 421 l~~~l~ 426 (430)
|.+.-+
T Consensus 553 L~~~~~ 558 (715)
T 3n75_A 553 LTDFKR 558 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-11 Score=113.78 Aligned_cols=303 Identities=11% Similarity=0.061 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhhcCCCC-CeEEEcCCch-HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 78 PVIKLSEKLSSLTQYKL-GHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~-~~v~~~~sgt-eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
....+..++.+.++.+. ...++++|+| .++..++.+++... ++.+.||+. ..-|-+..-++.+.+..
T Consensus 99 ~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~-----~~~~~viv~-r~aHkSv~kAl~l~Gl~----- 167 (450)
T 3bc8_A 99 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKR-----PKAKYIIWP-RIDQKSCFKSMVTAGFE----- 167 (450)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHC-----TTCCEEEEE-CCCCHHHHHHHHHTTCE-----
T ss_pred HHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhh-----cCCCEEEEE-CCcHHHHHHHHHHcCCe-----
Confidence 34456666666665332 3458899998 44454555555421 123455554 56887766555555421
Q ss_pred hhccCCCeeEeCC---CCCCCCCCCCChhHHHHHHHHHHHHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 156 YTSLLNKTYIITT---PDSRNINKGNSANEIARCAIFDLEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 156 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.++++. ++..+. |+++|+++|++++ +.+++|++.| ....+|...+ +++|.++
T Consensus 168 -------p~~v~~~~~~~~~~i------------d~~~le~aI~~~~~~~~~~Vv~t~-t~~g~g~~dd----l~~Ia~i 223 (450)
T 3bc8_A 168 -------PVVIENVLEGDELRT------------DLKAVEAKIQELGPEHILCLHSTT-ACFAPRVPDR----LEELAVI 223 (450)
T ss_dssp -------EEEECCEEETTEEEC------------CHHHHHHHHHHHCGGGEEEEEEES-SCCTTBCCCC----HHHHHHH
T ss_pred -------eEEEEeeecCccCCc------------CHHHHHHHHHhcCCCCEEEEEEEC-CcCCCceecC----HHHHHHH
Confidence 122211 111121 8999999998875 5788888887 5555555666 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEE-cHHHHHhhhccCCcccccccCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMT-TDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~-~~~~~~~~~~~~~~~~~~~~~t 307 (430)
|++||+++||||+|.+..+....+..+.... ..|.+++| |.+..- ...+.+.. .++..+.+.. . +..+
T Consensus 224 a~~~gi~l~VD~A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~-~~~~~l~~rd~~~~~~~~~------~-~~g~ 295 (450)
T 3bc8_A 224 CANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISK------M-YPGR 295 (450)
T ss_dssp HHHHTCCEEEECTTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHH------H-SCSC
T ss_pred HHHCCCeEEEECCCchhhhhhHhHHHHHhcccCCCEEEECCccCCCch-hccEEEEecCHHHHHHHHH------H-hhcC
Confidence 9999999999999875422111111111111 46888887 655432 34456665 4555555443 1 1111
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHchh---cCCCeeeEeecceEEEEEEeecCCccchhHHH
Q psy14484 308 YSGNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLI---THPKIINFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~l~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
-+.+| ++. .+.++..+..+.+ .++..++.+++++.++++. ....+. .+..+.-..+.+. .-.........
T Consensus 296 ~s~Sp-sL~-l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~~~~~~l~-~~~~~~~~D~t 371 (450)
T 3bc8_A 296 ASASP-SLD-VLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPISLAMTLK-TIDGHHDKAVT 371 (450)
T ss_dssp BCSHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSSEEEEECT-TTSSSSSCHHH
T ss_pred CcccH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCCcceeecc-cccccccCCCc
Confidence 12233 222 2233322222333 3333667788888888774 322221 1111111222222 10000000013
Q ss_pred HHHHHHHHCC---cEEe-------------e---------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 382 KFFVAALKNE---LLLR-------------P---------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 382 ~~~~~l~~~G---v~~~-------------~---------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++.-.+...| .-+. . ....+-+..+...+++++++++++|+++..+
T Consensus 372 kl~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 372 QLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp HHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 4444454443 3322 1 1257788889899999999999999988653
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.9e-07 Score=88.43 Aligned_cols=296 Identities=12% Similarity=0.078 Sum_probs=157.0
Q ss_pred HHHHH-HHHHhhcCCCCCeE---EEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchh
Q psy14484 79 VIKLS-EKLSSLTQYKLGHC---FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKE 154 (430)
Q Consensus 79 ~~~l~-~~l~~~~~~~~~~v---~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~ 154 (430)
.+.|+ ++..++++++..+. +--.||+.||.++..++.. ++++|+.++-.--||..-.......+ .
T Consensus 101 iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~--------PGD~ilg~~l~~GGHltHg~~~~~~~---v 169 (490)
T 3ou5_A 101 IELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--------PHDRIMGLDLPDGGHLTHGYMSDVKR---I 169 (490)
T ss_dssp HHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---------CCCEECBC---------------------
T ss_pred HHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcC--------CCCEEEecccCCCCcccccccCCCcc---c
Confidence 33444 45567887666532 2235999999999988876 77889887765444421110000000 0
Q ss_pred hhhccCCCeeEeCCC---CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 155 IYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.+.. .....++++ ++... |.|++++...++ ++++||+-. +..--..+ +++++++
T Consensus 170 ~~sg--~~~~~~~Y~vd~~t~~I------------Dyd~~~~~A~~~--kPklIi~G~---SaY~r~id----~~~~reI 226 (490)
T 3ou5_A 170 SATS--IFFESMPYKLNPKTGLI------------DYNQLALTARLF--RPRLIIAGT---SAYARLID----YARMREV 226 (490)
T ss_dssp ------------CBCEETTTTEE------------CHHHHHHHHHHH--CCSEEEECC---SSCCSCCC----HHHHHHH
T ss_pred cccc--ccccccccccCCCCCcc------------cHHHHHHHHhhc--CCCeEEECC---ccCccccC----HHHHHHH
Confidence 0000 001122221 11111 888998888865 566777744 22222233 8999999
Q ss_pred HHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHH---------------HHHhh
Q psy14484 232 CNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK---------------IYNSI 293 (430)
Q Consensus 232 ~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~---------------~~~~~ 293 (430)
|++.|++|++|-+|. |+--.| .+... .. ..|++|.+ |.|.| -+-|.++++++ +.+.+
T Consensus 227 Ad~vGA~Lm~DmAHiaGLVA~g-~~psP-~~-~ADvVTtTTHKTLrG--PrGG~Il~~~~~~~~~~k~~~~~~~~~~kki 301 (490)
T 3ou5_A 227 CDEVKAHLLADMAHISGLVAAK-VIPSP-FK-HADIVTTTTHKTLRG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRI 301 (490)
T ss_dssp HHHHTCEEEEECGGGHHHHHTT-SSCCG-GG-TCSEEEEESSSTTCS--CSCEEEEEECSEEEECC--CCEEECCCHHHH
T ss_pred HhhcccEEEechhhhhhhhccc-ccCCc-cc-cceEEeccccccccC--CCceEEEeccccccccccccchhHHHHHHHH
Confidence 999999999998876 441111 11111 11 26888877 88877 47788888763 33333
Q ss_pred hccCCcccccccCCCCCC-HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEe
Q psy14484 294 YYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVI 369 (430)
Q Consensus 294 ~~~~~~~~~~~~~t~~~~-~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~ 369 (430)
.. ....+..++. .-.+++-..++..... .++.+++.++++.|.+.|.+. +++.+..-. ...++.+++.
T Consensus 302 n~------aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgT-dnHlvLvDl~ 373 (490)
T 3ou5_A 302 NF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER-GYSLVSGGT-DNHLVLVDLR 373 (490)
T ss_dssp HH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC-SSSEEEEECG
T ss_pred Hh------hcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCC-CceEEEEecc
Confidence 32 1111222222 2222222222332222 345566777888888888664 333332211 2234555665
Q ss_pred ecCCccchhHHHHHHHHHHHCCcEEee----c------CCEEEEeCCCC----CCHHHHHHHHHHHHHHHH
Q psy14484 370 IEDPEQIETFSKKFFVAALKNELLLRP----I------GNTVYLMPPYI----LNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 370 ~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~------~~~lR~~~~~~----~t~e~i~~~~~~l~~~l~ 426 (430)
+... . .....+.|.+.||.+.. . ...||+..+.. ..++|++++.+.|.+++.
T Consensus 374 -~~g~-t---G~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 374 -PKGL-D---GARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp -GGTC-C---HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -ccCC-C---HHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3111 1 24566677788998763 1 25789875543 478888888888877764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d2byla1 | 404 | c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu | 3e-77 | |
| d1sffa_ | 425 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 4e-76 | |
| d1vefa1 | 387 | c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a | 8e-74 | |
| d1z7da1 | 404 | c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla | 1e-69 | |
| d1s0aa_ | 429 | c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona | 9e-66 | |
| d2gsaa_ | 427 | c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase | 3e-61 | |
| d1zoda1 | 431 | c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P | 5e-54 | |
| d1ohwa_ | 461 | c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA | 2e-42 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 6e-27 | |
| d1ax4a_ | 465 | c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas | 5e-23 | |
| d1c7ga_ | 456 | c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi | 7e-08 |
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 243 bits (621), Expect = 3e-77
Identities = 105/416 (25%), Positives = 182/416 (43%), Gaps = 40/416 (9%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ + K + L DV G++Y D +SS GH + I ALK+Q++KL S
Sbjct: 25 VALERGKGIY---LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT--SRA 79
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--KKKFICL 132
+ V+ E+ + + G A E A K++ + Y + K K +
Sbjct: 80 FYNNVLGEYEEYITKLFNYHKVLPMNT-GVEAGETACKLARKWGYTVKGIQKYKAKIVFA 138
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
++ G TL A++ + + + + + II D + LE
Sbjct: 139 AGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYND-----------------LPALE 181
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L+ +AA ++EP +Q G+++ D YL VRE+C + + IADEI G RTG
Sbjct: 182 RALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG 238
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
++ A ++ + PD + L K ++GG P+S V+ D I +I H +Y GNP
Sbjct: 239 RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNP 292
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
L C A+A LE+ ++N+ + + + L L + R KG++ A I
Sbjct: 293 LGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNA----IVI 347
Query: 373 PEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
E + + K + N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 348 KETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Score = 241 bits (615), Expect = 4e-76
Identities = 109/426 (25%), Positives = 185/426 (43%), Gaps = 30/426 (7%)
Query: 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 70
+ + +N + DV G+ YLD V GH + + A++ QL KL H
Sbjct: 20 QIHPIFADRAENCR---VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC 76
Query: 71 LSNLTHKPVIKLSEKLS-SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
L ++P ++L E ++ + + G+ AVE A+K++ +
Sbjct: 77 FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGT 130
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
I +YHG T LA+T + L+ +E A
Sbjct: 131 IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI----SEDDAIASI 186
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
IAAI+IEP VQ GG +++ +R +C+ + I LIADE+ G G
Sbjct: 187 HRIFKNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAG 245
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTG FA E + PD +K I GG+ PL+ V ++ +++ +Y+
Sbjct: 246 RTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAP------GGLGGTYA 298
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDV 368
GNP+AC AAL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A +
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE- 357
Query: 369 IIEDPEQIETFSK---KFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
+ ED + + +K + A L+L G N + ++ P + +I+ I
Sbjct: 358 LFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIS 417
Query: 423 QTFNEV 428
Q F+E
Sbjct: 418 QCFDEA 423
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Score = 234 bits (597), Expect = 8e-74
Identities = 99/409 (24%), Positives = 170/409 (41%), Gaps = 45/409 (11%)
Query: 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS 72
++L+I + + + D G Y+D + + V GH N + +A+K Q L +
Sbjct: 19 HDLLIVRGQGAR---VWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-Q 74
Query: 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
L + L+++ +L F + G A E ALK + + +KKF+
Sbjct: 75 TLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAA 128
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
+ G T+G+L+VT ++E + L+ I D +E
Sbjct: 129 MRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYND--------------------VE 168
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L + + AA+I+EP VQ GG+ +L+ REI LI DEI G GRTG
Sbjct: 169 ALKRAVDEETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
K FA EH I PD L L+K + GG ++ H ++ GNP
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPL-------GVAVMREEVARSMPKGGHGTTFGGNP 280
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
LA A +A + + + +R ++ + L ++ PKI R G++ ++ +
Sbjct: 281 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA 339
Query: 373 PEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
I K+ V L L+ + +PP ++ K +++ + A+
Sbjct: 340 APYIARLEKEHRV------LALQAGPTVIRFLPPLVIEKEDLERVVEAV 382
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Score = 224 bits (571), Expect = 1e-69
Identities = 93/415 (22%), Positives = 164/415 (39%), Gaps = 37/415 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+V++ K + + DV+ KRY D +S++ GH + I A+ NQ L +
Sbjct: 23 VVLKRAKGVF---VYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-F 78
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
P+ L++L Y A+ L + Y K N K + +N
Sbjct: 79 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 138
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
++ G TLG ++ + + + + + D + +
Sbjct: 139 NFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE------------------ 180
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+ + A I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK
Sbjct: 181 -ELKDPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 238
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
H + PD + L K ++GG+ P+S V+ D I I H +Y GNPLA
Sbjct: 239 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLA 292
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDP 373
+ L + + + + + + L + + + R KG++ A + E
Sbjct: 293 ASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV 352
Query: 374 EQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ +N L+ R + T+ L PP + K ++ T I +T
Sbjct: 353 N-----VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 402
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Score = 214 bits (545), Expect = 9e-66
Identities = 141/402 (35%), Positives = 221/402 (54%), Gaps = 15/402 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLV 96
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
++T L F G+ AVEVA+KM+ YW K +++F+ +N YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK-GEARQRFLTFRNGYHGDTFGAMSVC 155
Query: 148 NI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
+ S ++ L + P SR + + + + + + ++IAA+I
Sbjct: 156 DPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA------AHRHEIAAVI 209
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
LCL K +TGG + LS +TT ++ + F+H ++ GNPLAC AA A+L I
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAET-ISNGEAGCFMHGPTFMGNPLACAAANASLAILE 328
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ Q+++ ++ + L + + R G I + P + K F
Sbjct: 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE--TTHPVNMAALQKFF--- 383
Query: 387 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 384 -VEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Score = 202 bits (515), Expect = 3e-61
Identities = 83/432 (19%), Positives = 156/432 (36%), Gaps = 42/432 (9%)
Query: 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 27 AFKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83
Query: 66 LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125
+ ++ + + + G A L++ Y
Sbjct: 84 GTSFGAPCALENVLAEMVNDAVP----SIEMVRFVNSGTEACMAVLRLMRAYT------G 133
Query: 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN--EI 183
+ K I + YHG L + + P S + K +AN
Sbjct: 134 RDKIIKFEGCYHGHADMFLVKAG------------SGVATLGLPSSPGVPKKTTANTLTT 181
Query: 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243
+ ++ L +N +IA +I+EP + G I+ D+ +L+ +REI ++ L+ DE
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 244 IAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL 303
+ G E + PD L K I GG + +I +
Sbjct: 241 VMTGFRIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGA-YGGKREIMQLVA---PAGPMY 295
Query: 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKG 361
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ + G
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
Query: 362 MIWAF--DVIIEDPEQIETFS----KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
M F + + + E + +F L+ + L P + +I
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDID 414
Query: 416 HMTSAIFQTFNE 427
+A +
Sbjct: 415 ATLAAARTVMSA 426
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Score = 183 bits (465), Expect = 5e-54
Identities = 93/423 (21%), Positives = 178/423 (42%), Gaps = 24/423 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 25 MIIERAKGSF---VYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEM 80
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQ 134
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
S+HG T A + T K + + + I R + N A + + +++
Sbjct: 135 SWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+++ +AA I EP + +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 195 DRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM 253
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FAC+ + PD L LSK + G ++V +I + + +L ++ +PL
Sbjct: 254 FACQRDGVTPDILTLSKTLGAGLPLAAIVT-----SAAIEERAHELGYLFYTTHVSDPLP 308
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVII--E 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++
Sbjct: 309 AAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRR 368
Query: 372 DPEQIETFSKKFFVAALKNELL-----LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
E + K + L L +G + PP ++++EI S + Q
Sbjct: 369 TKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
Query: 427 EVI 429
+
Sbjct: 429 RAL 431
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 153 bits (386), Expect = 2e-42
Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 55/446 (12%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ ++ L+DV G R LD S G+S+ + K ++ N + L
Sbjct: 37 CNYEESRGNY---LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL 93
Query: 75 THKP----VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG-------- 122
P V KL E L S+ + + G+ + E A K F ++ +K
Sbjct: 94 GILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSK 153
Query: 123 ------------FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK----TYII 166
+ ++HG T+G LA T+ ++ +I + +
Sbjct: 154 EELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRL 213
Query: 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226
P + + + DL + +K +A II+EP +Q GG + +
Sbjct: 214 KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFR 272
Query: 227 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVM 284
+R+I + + DE+ G G TGKF+A EH + D + SK + G
Sbjct: 273 KLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEF 332
Query: 285 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 344
+ Y + N + ++L + K +
Sbjct: 333 RPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE------------DLLSNAAHAGKVLLTG 380
Query: 345 LTSLIT-HPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTV 401
L L +P+ I R +G +FD E K A ++L G ++
Sbjct: 381 LLDLQARYPQFISRVRGRGTFCSFDTPDES------IRNKLISIARNKGVMLGGCGDKSI 434
Query: 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427
P + + + +
Sbjct: 435 RFRPTLVFRDHHAHLFLNIFSDILAD 460
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 110 bits (274), Expect = 6e-27
Identities = 44/435 (10%), Positives = 107/435 (24%), Gaps = 57/435 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH--------KPV 79
+ + S L + +I+ + + M + + +
Sbjct: 17 RTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSY 76
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 77 YALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDT 134
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
T G + + + G + + LE +++
Sbjct: 135 TQGHSQINGCT--------------VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG 180
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTGK 253
I+ + + G LK + I Y+I ++ D R +
Sbjct: 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 254 FFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS 305
+ +I + + K L + + +
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300
Query: 306 HSYSGNPLACCAALAT-LEIFNKDNILQRISQDMKKITKALTSLI-------THPKIINF 357
+Y G LA L + L ++ + L + H ++
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDA 360
Query: 358 RQKGMIWAFDVIIEDPEQIETF----------SKKFFVAALKNELLLRPIGNTVYL-MPP 406
+ D E + K L + L +P
Sbjct: 361 GKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR 420
Query: 407 YILNKNEIQHMTSAI 421
+ + + A
Sbjct: 421 ATYTQTHMDFIIEAF 435
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Score = 98.5 bits (244), Expect = 5e-23
Identities = 56/434 (12%), Positives = 107/434 (24%), Gaps = 58/434 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYI--------NKALKNQLNKLEHVMLSNLTHKPV 79
+ + + + L S YI N +Q + + +
Sbjct: 18 VPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNY 77
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L +K L Y + G A + + Y +G FI +++H +
Sbjct: 78 YDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI---SNFHFD 132
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
T A N I T + I L+ + ++
Sbjct: 133 TTAAHVELNGCKAINIVTEKAFDSETYDDWK-------------GDFDIKKLKENIAQHG 179
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTGK 253
I+ + + G LK V EI + I ++ D R K
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239
Query: 254 FFACEHAEIWP------DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 307
+ E+ D L +S LV D + +
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299
Query: 308 YSGNPLACCAAL--ATLEIFNKDNILQRISQD-------MKKITKALTSLITH------- 351
Y G AA+ E ++ + RI Q + H
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCK 359
Query: 352 ---PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL-MPPY 407
P+I + + +E + + L +
Sbjct: 360 KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419
Query: 408 ILNKNEIQHMTSAI 421
+ + + ++ A+
Sbjct: 420 VYTNDHMDYIADAL 433
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Score = 52.1 bits (124), Expect = 7e-08
Identities = 48/355 (13%), Positives = 91/355 (25%), Gaps = 53/355 (14%)
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 138
L + + L +K H G A + G +H
Sbjct: 77 FYHLEKTVKELFGFK--HIVPTHQGRGAENLL----SQLAIKPGQYVAGNMYFTTTRFHQ 130
Query: 139 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198
E GA V + + P +I+ + L L+K+
Sbjct: 131 EKNGATFVDIV--------RDEAHDASLNLPFKGDID------------LNKLATLIKEK 170
Query: 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTGK 253
+ A I + G ++ V E+ + Y I + D E A
Sbjct: 171 GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEA 230
Query: 254 FFA-----------CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 302
+ +A+ + K L M ++++++ +
Sbjct: 231 GYENVSIKDIVHEMFSYADGC--TMSGKKDCLVNIGGF-LCMNDEEMFSAAKELVVVYEG 287
Query: 303 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL-TSLITHPKIINFRQKG 361
+ S+ A+ E + I R+ Q + L L I G
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV-----RYLGDKLREAGVPIVEPTGG 342
Query: 362 MIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
D P + F + A++ E +R + + E
Sbjct: 343 HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG-IVSAGRSKETGENH 396
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 100.0 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 100.0 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 100.0 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 100.0 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 100.0 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.97 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.96 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.96 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.95 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.95 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.94 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.93 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.93 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.93 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.93 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.93 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.93 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.93 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.93 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.92 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.92 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.92 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.91 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.91 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.91 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.91 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.91 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.9 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.9 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.9 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.89 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.88 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.88 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.86 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.86 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.85 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.85 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.84 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.84 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.83 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.83 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.83 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.81 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.81 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.78 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.77 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.77 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.76 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.76 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.76 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.74 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.72 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.71 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.71 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.7 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.68 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.67 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.62 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.61 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.6 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.59 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.54 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.51 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.5 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.5 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.49 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.46 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.44 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.42 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.39 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.39 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.36 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.36 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.35 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.33 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.27 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.22 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.21 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.16 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.0 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.86 |
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-65 Score=493.62 Aligned_cols=399 Identities=35% Similarity=0.612 Sum_probs=345.6
Q ss_pred CCcee-EEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 12 SNNLV-IRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 12 ~~~~~-~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
+.|.. +.+++|. |+||.||++||||.+|+|+.+|||+||+|++|++++++++.+.......++...++++++.+..
T Consensus 23 ~~p~~~i~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 99 (429)
T d1s0aa_ 23 PLPVYPVVSAEGC---ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMT 99 (429)
T ss_dssp CCCCEEEEEEEBT---EEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHS
T ss_pred CCCCcceEEeECC---EEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhh
Confidence 44554 7888877 7999999999999999999999999999999999999998776666777888899999999998
Q ss_pred CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCe-eEeCCC
Q psy14484 91 QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKT-YIITTP 169 (430)
Q Consensus 91 ~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 169 (430)
+.+.++++|++||+||++.|+++++.++..+|. ++.+||.+.++|||.+.+++++++...++..+.+..... ...+.+
T Consensus 100 ~~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~-~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
T d1s0aa_ 100 PQPLECVFLADSGSVAVEVAMKMALQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAP 178 (429)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCC
T ss_pred ccCcceeeeccccccchhhhhhhhhheeecccc-cccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccc
Confidence 878899999999999999999999999888875 566899999999999999999988766655544432222 333322
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc-cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 170 DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ-CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 170 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~-~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
...... .....+++++++.+.++++++++|++|| ++ +.+|..+|+++|+++|+++|++||++||+|||++||
T Consensus 179 ~~~~~~------~~~~~~~~~~~~~~~~~~~~iaavivEP-i~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 251 (429)
T d1s0aa_ 179 QSRMDG------EWDERDMVGFARLMAAHRHEIAAVIIEP-IVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251 (429)
T ss_dssp CSBC-C------CCCGGGGHHHHHHHHHHTTTEEEEEECS-SEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cccccc------ccchhhhhhhhhhhhhcCCccceeeecc-eeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccc
Confidence 211110 1112467788888887788999999999 65 778888999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
||+|.+++++.+++.||+++++|+++||+.|+|++++++++++.+.. +....+.|++||++||++++++.++|+.++++
T Consensus 252 GRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~-~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~ 330 (429)
T d1s0aa_ 252 GRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPLACAAANASLAILESG 330 (429)
T ss_dssp TTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHT-STTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC
T ss_pred cccccccccccceecccccccccccccccccccchhhHHHHHhccCC-CCCcceeecCCCCCCcccchhhhccccccccc
Confidence 99999999999999999999999999988999999999999988865 44566789999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCC
Q psy14484 329 NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 408 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~ 408 (430)
++.+++++.+++|+++|+++...+.+..+++.|+|+++++. .... ...+.+.|+++|+++.+.++.+||+|+++
T Consensus 331 ~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~~e~~-~~~~-----~~~~~~~~~~~Gl~~~~~g~~i~~~Ppl~ 404 (429)
T d1s0aa_ 331 DWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETT-HPVN-----MAALQKFFVEQGVWIRPFGKLIYLMPPYI 404 (429)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEEETTEEEEEES-SCBC-----HHHHHHHHHHTTEECCCBTTEEEECCCTT
T ss_pred cccchhhHHHHHHHHHHHHhccCCceEEEeecccEEEEEec-Cccc-----HHHHHHHHHHCCcEEEecCCEEEEeCCcC
Confidence 99999999999999999999777888899999999999997 5321 35789999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q psy14484 409 LNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 409 ~t~e~i~~~~~~l~~~l~~~ 428 (430)
+|++||++++++|+++++++
T Consensus 405 it~~eid~~~~~l~~al~e~ 424 (429)
T d1s0aa_ 405 ILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSSG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998765
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.9e-65 Score=491.00 Aligned_cols=382 Identities=27% Similarity=0.398 Sum_probs=340.0
Q ss_pred ccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh
Q psy14484 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (430)
.+.+.|.++.+++|. |+||.||++||||.+++|+.+|||+||+|++|++++++++.+... .+.++...++++.+.+
T Consensus 19 ~~~p~P~~i~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~-~~~~~~~~~~~~~~~~ 94 (404)
T d2byla1 19 NAHPLPVALERGKGI---YLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITK 94 (404)
T ss_dssp CCCCEEEEEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT-TEEESSHHHHHHHHHH
T ss_pred CCCCCCceEEEeecC---EEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc-ccccchHHHHHHhhhh
Confidence 456789999999998 799999999999999999999999999999999999998765432 3445556677788877
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG--FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g--~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
.. +.++++|++||+||++.|+|+++.++...+ .+.+.+++.+.++|||.+..+++.+..+.++..+.+...+...+
T Consensus 95 ~~--~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (404)
T d2byla1 95 LF--NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDII 172 (404)
T ss_dssp HH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEE
T ss_pred cc--cccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEe
Confidence 76 668999999999999999999998765443 34677899999999999999999999888888888887777777
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
|++ |++++++.+. .+++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++
T Consensus 173 p~~-----------------d~~~l~~~l~--~~~iAaviiEP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 232 (404)
T d2byla1 173 PYN-----------------DLPALERALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT 232 (404)
T ss_dssp CTT-----------------CHHHHHHHHT--STTEEEEEECS-SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT
T ss_pred ccc-----------------CHHHHHHhcC--CCCeEEEEECC-ccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccc
Confidence 765 8899999996 46899999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||||+|.+|++++++++||++|+||+|+||++|+|++++++++++.+.+ ..+++||++||++|+++.++|+.++
T Consensus 233 GfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~ 306 (404)
T d2byla1 233 GLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP------GEHFSTYGGNPLGCRVAIAALEVLE 306 (404)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCT------TSSCCSSTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCC------CCCCcCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998899999999999887765 4689999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeC
Q psy14484 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMP 405 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~ 405 (430)
++++.+++++++++++++|+++ ..+.+..+++.|+++++++. +..... +.++.++|+++|+++.+. ++++||+|
T Consensus 307 ~~~l~~~~~~~g~~l~~~l~~l-~~~~i~~vRg~Gl~~~i~~~-~~~~~~---~~~~~~~l~~~Gvl~~~~~~~~i~l~P 381 (404)
T d2byla1 307 EENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNAIVIK-ETKDWD---AWKVCLRLRDNGLLAKPTHGDIIRFAP 381 (404)
T ss_dssp HTTHHHHHHHHHHHHHHHHHTS-CTTTEEEEEEETTEEEEEEC-CCSSCC---HHHHHHHHHHTTEECEEEETTEEEECC
T ss_pred hcCchhhhhHhhHHHHHHHHhh-ccccceeeeecccEEEEEEe-cCCchh---HHHHHHHHHhCCeEEecCCCCEEEEEC
Confidence 9999999999999999999998 34567889999999999987 533222 467899999999999875 68999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++++|+++|++++++|++++.+
T Consensus 382 pL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 382 PLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999874
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.1e-65 Score=494.04 Aligned_cols=395 Identities=28% Similarity=0.403 Sum_probs=334.7
Q ss_pred CCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhc
Q psy14484 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLT 90 (430)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 90 (430)
++.|+++.+++|. |+||.||++||||.+++|+.+|||+||+|.+|+++++.++.+.......++...++++.|.+.+
T Consensus 20 ~~~P~~~~~~~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~ 96 (425)
T d1sffa_ 20 QIHPIFADRAENC---RVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKV 96 (425)
T ss_dssp CSEEEEEEEEEBT---EEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHS
T ss_pred CCCCceEEEEecC---EEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhh
Confidence 4578999999888 8999999999999999999999999999999999999988766656677889999999999999
Q ss_pred CCC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCee-EeCC
Q psy14484 91 QYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTY-IITT 168 (430)
Q Consensus 91 ~~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 168 (430)
|.. .++++|++||+||++.|+|+++.++ +|.+||.++++|||++..++++++.......+.+...... ..++
T Consensus 97 p~~~~~~v~f~~sGseA~e~Alk~ar~~t------~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 170 (425)
T d1sffa_ 97 PGDFAKKTLLVTTGSEAVENAVKIARAAT------KRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALY 170 (425)
T ss_dssp SCSSCEEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECC
T ss_pred hhcccceeeeeccccchhhhHHHHhhhhh------cccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCC
Confidence 744 4689999999999999999999987 8999999999999999999998887665554444333332 2233
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC
Q psy14484 169 PDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248 (430)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~ 248 (430)
|..... ... .....+.+++. ......+++++||+|| +++++|.++|+++|++.|+++|++||++||+|||++||
T Consensus 171 ~~~~~~---~~~-~~~~~~~~~~~-~~~~~~~~vaavi~EP-i~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~ 244 (425)
T d1sffa_ 171 PCPLHG---ISE-DDAIASIHRIF-KNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGA 244 (425)
T ss_dssp CBGGGT---BCH-HHHHHHHHHHH-HHTCCGGGEEEEEECS-BCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred cccccc---ccc-hhhHHHHHHHH-HhcccccceEEEEecC-ccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccC
Confidence 321111 011 11111122211 1222246899999999 99999999999999999999999999999999999999
Q ss_pred CCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc
Q psy14484 249 GRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD 328 (430)
Q Consensus 249 g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~ 328 (430)
+|+|.+|+++++++.||++|+||+|+|| +|+|++++++++++.+.. ..+++||++||++|+++.++|++++++
T Consensus 245 gR~g~~~a~~~~gv~PDi~~~gK~l~gG-~P~~av~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~i~~~ 317 (425)
T d1sffa_ 245 GRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAP------GGLGGTYAGNPIACVAALEVLKVFEQE 317 (425)
T ss_dssp TTTSSSSGGGGTTSCCSEEEECGGGGTS-SCCEEEEEEHHHHTTSCT------TSBCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhHHHhcCCCccceecccccCCC-cceEEEEEcHHHHHhhCC------CCCCCCCCcCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 599999999999988765 358899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEeec---CCEE
Q psy14484 329 NILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLRPI---GNTV 401 (430)
Q Consensus 329 ~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~~~---~~~l 401 (430)
++.++++++++++++.|+++ ..++.+..+++.|+++++++. .+.. ....++..+.+.|+++|+++.++ ++.+
T Consensus 318 ~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~~i~f~-~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~n~i 396 (425)
T d1sffa_ 318 NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELF-EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVL 396 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEB-GGGCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEE
T ss_pred hhhhhhhhhhhhhhhhhhhhHhhCCceEEEEccccEEEEEEe-ccCccCCccHHHHHHHHHHHHHCCCEEeccCCCCCEE
Confidence 99999999999999999988 788888899999999999997 4322 22345678999999999998876 3789
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
||+|++++|++||++++++|+++++++
T Consensus 397 ~~~PpL~it~~eid~~l~~l~~al~ei 423 (425)
T d1sffa_ 397 RILVPLTIEDAQIRQGLEIISQCFDEA 423 (425)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999886
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.5e-65 Score=486.99 Aligned_cols=373 Identities=26% Similarity=0.418 Sum_probs=336.2
Q ss_pred cccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHH
Q psy14484 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (430)
..|.+.|.++.+++|+ |+||.|||+||||.+++|+++|||+||+|.+|+.++++++.+.. ....++...++++.+.
T Consensus 14 ~~y~~~p~~i~ra~G~---~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~ 89 (387)
T d1vefa1 14 GVYNKHDLLIVRGQGA---RVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLT 89 (387)
T ss_dssp SCSCCCSSCEEEEEBT---EEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHH
T ss_pred CCCCCCCceEEEeEcC---EEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhh
Confidence 3467789999999998 89999999999999999999999999999999999999865433 3466788889999998
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+..+...+++.|++||+||++.|+|+++.++ ++.+|+++.++|||++..+.++++.+.++.++.+......++|
T Consensus 90 ~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t------~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p 163 (387)
T d1vefa1 90 AILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP 163 (387)
T ss_dssp HTSCTTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEEC
T ss_pred hhccccceeeccccCchHHHHHHHHHHHhhc------ccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeC
Confidence 8887666799999999999999999999987 8899999999999999999999998888888888877777777
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
++ |++.|++.+. +++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++|
T Consensus 164 ~~-----------------d~~~l~~~~~---~~iAavi~EP-i~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG 222 (387)
T d1vefa1 164 YN-----------------DVEALKRAVD---EETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTG 222 (387)
T ss_dssp TT-----------------CHHHHHHHCC---TTEEEEEECS-EETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CC-----------------CHHHHHHhcC---CCeEEEEEEC-CCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccc
Confidence 65 7899998884 6899999999 9999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 248 ~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
|||+|.++++++++++||++++||+++|| +|++++++++++++.+.+ ..|++||++||++|+++.++|+++++
T Consensus 223 fgR~G~~~~~~~~~v~PDi~~~gK~l~gG-~~~~~~~~~~~~~~~~~~------~~~g~T~~gnPla~aaa~a~L~~l~~ 295 (387)
T d1vefa1 223 MGRTGKRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPK------GGHGTTFGGNPLAMAAGVAAIRYLER 295 (387)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEECGGGGTT-SSCEEEEEEHHHHHTSCT------TSSCCSSTTCHHHHHHHHHHHHHHHH
T ss_pred cCccCCCcccccCCcCCceeeecccCCCC-ccccccccceeeeecccc------CCccccCCCCcchhhhcccchhhccc
Confidence 99999999999999999999999999999 699999999999887765 46899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCC
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPP 406 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~ 406 (430)
+++.+++++.+++++++|+++ ..+.+..+++.|+++++++. ++. ...+.+.++++|+++.+. ++.+||+|+
T Consensus 296 ~~~~~~v~~~g~~l~~~L~~l-~~~~v~~vrg~Gl~~~ie~~-~~~------~~~~~~~~~~~g~l~~~~g~~~ir~~Pp 367 (387)
T d1vefa1 296 TRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELK-EKA------APYIARLEKEHRVLALQAGPTVIRFLPP 367 (387)
T ss_dssp HTTHHHHHHHHHHHHHHHHTS-CCTTEEEEEEETTEEEEEES-SCS------HHHHHHHHHHHCEECEESSTTEEEECCC
T ss_pred ccccchHhhhhHHHHHHHHhc-CCCceEEEeecceEEEEEEe-CCc------hHHHHHHHHHCCCeEEecCCCEEEEECC
Confidence 999999999999999999988 34667889999999999998 532 245777788889887765 589999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy14484 407 YILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~ 426 (430)
+.+|++||++++++|+++|+
T Consensus 368 l~it~~~ld~~~~~i~~aLS 387 (387)
T d1vefa1 368 LVIEKEDLERVVEAVRAVLA 387 (387)
T ss_dssp TTCCHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999873
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=100.00 E-value=5e-65 Score=495.34 Aligned_cols=399 Identities=24% Similarity=0.379 Sum_probs=341.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCC
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 92 (430)
.|.++.+++|+ |+||.|||+||||.+++|+.+|||+||+|.+|++++++++.+. .+.+.++...+++++|.+..+.
T Consensus 23 ~P~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~~~~~~~~~~la~~L~~~~~~ 98 (431)
T d1zoda1 23 EPMIIERAKGS---FVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHL-FSEMLSRPVVDLATRLANITPP 98 (431)
T ss_dssp CSSCCCEEEBT---EEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCC-CTTCCCHHHHHHHHHHHHHSCT
T ss_pred CCCeEEEeecC---EEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccc-ccccccHHHHHHHHHHHHhCCc
Confidence 58999999888 8999999999999999999999999999999999999997764 3466788889999999999876
Q ss_pred CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCC
Q psy14484 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172 (430)
Q Consensus 93 ~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (430)
+.++++|++|||||++.|+|+++.++ +|++|+.++++|||.+.++++++..+. +..+.+.......++.+...
T Consensus 99 ~~~~v~f~~sGseA~e~Alk~Ar~~t------~r~~i~~~~~~yHG~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 171 (431)
T d1zoda1 99 GLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQSWHGMTGAAASATYSAG-RKGVGPAAVGSFAIPAPFTY 171 (431)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHH------TCCEEEEETTCCCCSSHHHHHTCCSSC-CSSSCCCCTTEEEECCCCTT
T ss_pred ccceeeecccccchHHHHHHHHHHhc------CCcceeecccccccccchhhccccccc-ccccCCcccCceeeeeeccc
Confidence 78999999999999999999999987 899999999999999999988887653 44555666666677766655
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc
Q psy14484 173 NINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251 (430)
Q Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~ 251 (430)
..............+++.++..+.+. ++++++||+|| +++++|.+.|+++|+++|+++|++||++||+|||+|||||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EP-i~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRt 250 (431)
T d1zoda1 172 RPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT 250 (431)
T ss_dssp SCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECS-EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred ccccccccchhhhhhHHHHHHHHHHhccccccceeecc-ccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccc
Confidence 44332222222334555555554433 57899999999 99999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHH
Q psy14484 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNIL 331 (430)
Q Consensus 252 g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~ 331 (430)
|.+|++++++++||++++||+++|| +|++++++++++++.+.. ....+++|++++|++++++.++|++++++++.
T Consensus 251 G~~~~~~~~gv~PDi~~~gK~l~gG-~p~~av~~~~~~~~~~~~----~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~ 325 (431)
T d1zoda1 251 GTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAHE----LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLV 325 (431)
T ss_dssp SSSSTHHHHTCCCSEEEECHHHHTT-SSCEEEEECHHHHHHHHH----TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccCCCCcchhccccccccc-cccceeeeeecchhhhhc----ccccccCCCCCCcchHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999 699999999988876654 23458899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc---cchhHHHHHHHHHHHCCcEEe----e-cCCEEE
Q psy14484 332 QRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE---QIETFSKKFFVAALKNELLLR----P-IGNTVY 402 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~a~~~~~~l~~~Gv~~~----~-~~~~lR 402 (430)
+++.+.++++.+.++++ ..++.+..+++.|+|+++++. .+.. .....+..+.+.|+++|+... + .++.||
T Consensus 326 ~~~~~~g~~l~~~l~~~~~~~~~i~~vrG~Glm~~ie~~-~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~ 404 (431)
T d1zoda1 326 ARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIV-KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFR 404 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEE-EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEE
T ss_pred HHHHHHHHHHhhhhhhhhhcCCCeEEEeecceEEEEEEe-cCCcccCccHHHHHHHHHHHHHhCcccCeeeecCCCCEEE
Confidence 99999999999999888 778889999999999999986 4322 122345788999999998532 2 358999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 403 LMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 403 ~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
|+|++++|++||++++++|+++++++|
T Consensus 405 l~Ppl~it~~eid~~~~~l~~al~~vl 431 (431)
T d1zoda1 405 IAPPLTVSEDEIDLGLSLLGQAIERAL 431 (431)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999985
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=100.00 E-value=4.4e-62 Score=469.93 Aligned_cols=383 Identities=25% Similarity=0.381 Sum_probs=313.3
Q ss_pred ccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHh
Q psy14484 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88 (430)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (430)
.|.+.|.++.+++|+ |+||.|||+||||.+++|+.+|||+||+|++|+++++.++.+... ...+.....+++.+.+
T Consensus 17 ~y~p~P~~i~~a~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (404)
T d1z7da1 17 NYDPIPVVLKRAKGV---FVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTN 92 (404)
T ss_dssp CCCCEEEEEEEEEBT---EEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHH
T ss_pred CCCCCCceEEEeecC---EEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccc-ccchHHHHHHHHhhhh
Confidence 456789999999998 799999999999999999999999999999999999988665432 2334555566666666
Q ss_pred hcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhc--CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEe
Q psy14484 89 LTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK--GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYII 166 (430)
Q Consensus 89 ~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~--g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (430)
.. +.+.+.|++||++|++.|+++++.++..+ +.+.+.+++.+..+|||.+......+....++..+.+........
T Consensus 93 ~~--~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (404)
T d1z7da1 93 LL--GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKV 170 (404)
T ss_dssp HH--TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEE
T ss_pred cc--ccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCcccccc
Confidence 65 66899999999999999999999886544 234566899999999999999888888777777776666666666
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc
Q psy14484 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246 (430)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~ 246 (430)
+.+ +.++++..+. ++++++||+|| +++++|.++|+++|+++|+++|++||++||+|||++
T Consensus 171 ~~~-----------------~~~~l~~~~~--~~~iAavi~EP-i~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~t 230 (404)
T d1z7da1 171 PYD-----------------DLEALEEELK--DPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 230 (404)
T ss_dssp CTT-----------------CHHHHHHHHT--STTEEEEEECS-SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ccc-----------------hHHHHHHHhc--CCCEEEEEEEE-EcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence 654 6778877775 57899999999 999999999999999999999999999999999999
Q ss_pred CCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 247 g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
||||+|.+|+++++++.||++|+||+++||+.|+|++++++++++.+.. ..+++||++||++|+++.++|+++.
T Consensus 231 GfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~------~~~~~T~~gnpl~~aaa~a~L~~~~ 304 (404)
T d1z7da1 231 GLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLAASICVEALNVLI 304 (404)
T ss_dssp TTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT------TCCCCTTTTCHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCC------CCcCcCCCCCcchhhhhhhhhhhhh
Confidence 9999999999999999999999999999998899999999999887765 4589999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC-CEEEEe
Q psy14484 327 KDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLM 404 (430)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~-~~lR~~ 404 (430)
++++.+++.+..+++.+.++++ ..++.+..+++.|+++++++. ++.. . ...+++.|.++|+++.+.+ +.+||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~~~i~~~-~~~~-~---~~~~~~~l~~~Gl~~~~~~~~~ir~~ 379 (404)
T d1z7da1 305 NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFK-NELV-N---VLDICLKLKENGLITRDVHDKTIRLT 379 (404)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEEC-TTTC-C---HHHHHHHHHHTTEECCEETTTEEEEC
T ss_pred cchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcEEEEEEc-CCcc-c---HHHHHHHHHhCCeEEecCCCCEEEEE
Confidence 9999999999999999999876 788888899999999999998 5432 1 3568899999999998865 799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 405 PPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 405 ~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|++++|+++|++++++|+++++++
T Consensus 380 Ppl~it~~~id~~~~~l~~alk~~ 403 (404)
T d1z7da1 380 PPLCITKEQLDECTEIIVKTVKFF 403 (404)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999875
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=100.00 E-value=7.6e-62 Score=471.26 Aligned_cols=393 Identities=21% Similarity=0.262 Sum_probs=325.4
Q ss_pred ccccccCCCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHH
Q psy14484 5 VYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSE 84 (430)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (430)
+.|....+.|.++.+++|. |+||.||++||||.+++|+++|||+||+|++|++++++++.+. .........+++
T Consensus 26 ~~~~~~~~~P~~i~~a~G~---~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~---~~~~~~~~~la~ 99 (427)
T d2gsaa_ 26 RAFKSVGGQPIVFDRVKDA---YAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF---GAPCALENVLAE 99 (427)
T ss_dssp GCCTTTSSCCCCEEEEEBT---EEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHH
T ss_pred cccccCCCCCcEEEEeecC---EEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcc---ccchhHHHHHHH
Confidence 4566677889999999988 7999999999999999999999999999999999999875432 345667778888
Q ss_pred HHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCee
Q psy14484 85 KLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTY 164 (430)
Q Consensus 85 ~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
.+.+..+ ..+.++|++||+||++.|+|+++.++ +|.+||.+.++|||.+.++++.++....+..+ +......
T Consensus 100 ~~~~~~~-~~~~v~f~~sGseA~e~Alk~ar~~t------~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~-p~~~~~~ 171 (427)
T d2gsaa_ 100 MVNDAVP-SIEMVRFVNSGTEACMAVLRLMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVP 171 (427)
T ss_dssp HHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTC-CSCSSSC
T ss_pred HHHhhCC-ccccccccCCcHHHHHHHHHHHHHhc------CCCeEEEEecccccCcceeeeecCCcccccCC-CCCCCCc
Confidence 8888877 67899999999999999999999987 89999999999999999998887754332211 1111110
Q ss_pred EeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecc
Q psy14484 165 IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244 (430)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv 244 (430)
....++.. ....+|++++|+.++++++++++||+|| +++++|.++|+++|++.|+++|++||++||+|||
T Consensus 172 ~~~~~~~~---------~~~~~~~~~le~~~~~~~~~iaavi~Ep-i~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv 241 (427)
T d2gsaa_ 172 KKTTANTL---------TTPYNDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp HHHHTTEE---------EECTTCHHHHHHHHTTSTTTEEEEEECS-SBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred ccCcccee---------ccCcchHHHHHHHHHhCCCCeEEEEEcC-CcCCCCCccCCHHHHHHHHHHHHHhceeeeeccc
Confidence 00000000 0112489999999998888999999999 9999999999999999999999999999999999
Q ss_pred ccCCCCcccccccccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 245 ~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
++|| |+|.+|+++++++.||+++++|+++|| +|+|++++++++++.+.. .....+++||++||++++++.++|++
T Consensus 242 ~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG-~p~~a~~~~~~i~~~~~~---~~~~~~~~T~~gnpla~AAala~Le~ 316 (427)
T d2gsaa_ 242 MTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAP---AGPMYQAGTLSGNPLAMTAGIKTLEL 316 (427)
T ss_dssp TTBT-TTBTTCHHHHTTCCCSEEEECGGGGTT-SCCEEEEECHHHHTTBTT---TSSBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred cccc-eecccchHHhcCCCHHHHhhhhccCCC-cceeeeeehHHHHHHhcc---cCCCcCCCCCCCCchhhHHHHHhhHH
Confidence 9999 789999999999999999999999999 699999999999988765 34567889999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHch-hcCCCeeeEeecceEEEEEEeecCCc--------cchhHHHHHHHHHHHCCcEEe
Q psy14484 325 FNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPE--------QIETFSKKFFVAALKNELLLR 395 (430)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~a~~~~~~l~~~Gv~~~ 395 (430)
++++++.+++++++++|+++|+++ .+++....+.+.+.++++.+. .... ........+++.|+++||++.
T Consensus 317 i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~v~~~ggm~~i~~~-~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~ 395 (427)
T d2gsaa_ 317 LRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFT-EGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLA 395 (427)
T ss_dssp HTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESS-SCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECC
T ss_pred hhhhhHHhhhhHHHHHHHHHHHHHHhhcCCCcEEcccCCeEEEEEe-ccCCCCHHHhhcccHHHHHHHHHHHHHCCEEEC
Confidence 999999999999999999999998 677765566666677777664 3211 111234578889999999998
Q ss_pred ecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 396 PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 396 ~~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
|.+.. ++.|++.+|++|||+++++|+++++++
T Consensus 396 p~~~~-~~~~~l~~Te~dId~~l~al~~al~~L 427 (427)
T d2gsaa_ 396 PSQFE-AGFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp SSTTS-CEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCc-ceeCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 86532 345799999999999999999998763
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.2e-60 Score=464.71 Aligned_cols=393 Identities=21% Similarity=0.294 Sum_probs=318.0
Q ss_pred CCceeEEeecCCceeEEEECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC----CCCCHHHHHHHHHHH
Q psy14484 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS----NLTHKPVIKLSEKLS 87 (430)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~ 87 (430)
+.|.++.+++|+ |+||.||++||||.+|+|+++|||+||+|.+|+.++++...+...+ .......++|++.|.
T Consensus 34 ~~p~~~~~g~G~---~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~ 110 (461)
T d1ohwa_ 34 HFFCNYEESRGN---YLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLL 110 (461)
T ss_dssp CCCBCTTTCBBT---EEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGG
T ss_pred CCCeEEEEeecC---EEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHH
Confidence 467788888777 8999999999999999999999999999999999988765443221 223355677888888
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCC--------------------CCCcEEEEEcCCCCCcchhhhccC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGF--------------------LNKKKFICLQNSYHGETLGALAVT 147 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~--------------------~~~~~vl~~~~~yhg~~~~~~~~~ 147 (430)
+..+.+.++++|++||+||++.|+|+++.++..++. .++.+||.+.++|||.+.++++++
T Consensus 111 ~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~t 190 (461)
T d1ohwa_ 111 SVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATT 190 (461)
T ss_dssp GGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTC
T ss_pred hhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCccccccc
Confidence 877778889999999999999999999987654431 246689999999999999999999
Q ss_pred CCccchhhhhccCCCeeEeCCCCCCCCC--CCCChhHHHHHHHHHHHHHHH---hCCCCeEEEEEccccccCCCcccCCh
Q psy14484 148 NIQSFKEIYTSLLNKTYIITTPDSRNIN--KGNSANEIARCAIFDLEILLK---KNHNKIAAIIIEPLVQCAGGMIMYDS 222 (430)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~le~~l~---~~~~~~~~vi~ep~v~~~~G~~~~~~ 222 (430)
+.+.+++.+.+..... ..+.+...... ..........++++++++.+. .+++++++||+|| +++++|.++|++
T Consensus 191 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEP-i~g~~G~~~~~~ 268 (461)
T d1ohwa_ 191 HSKAIHKIDIPSFDWP-IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASD 268 (461)
T ss_dssp CSCHHHHTTCCCCCCC-EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECS-SBCTTTCBCCCH
T ss_pred CCcccccccccccCCc-ccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeecc-ccccccccCchh
Confidence 9888777665543332 23333211110 000111122334555555543 4468999999999 999999999999
Q ss_pred HHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCC--CceeeeecccCCCccccEEEEEcHHHHHhhhccCCcc
Q psy14484 223 IYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNIN 300 (430)
Q Consensus 223 ~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~--~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~ 300 (430)
+|+++|+++|++||++||+|||++||||+|.+|+++++++. ||++++||+++||+ +.....+ .. ..
T Consensus 269 ~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~gK~l~~g~-----~~~~~~~----~~---~~ 336 (461)
T d1ohwa_ 269 DFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGG-----FFHKEEF----RP---NA 336 (461)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEECGGGSSEE-----EEECGGG----SC---SS
T ss_pred hHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhhhhhhcccccc-----ccccccc----cc---cc
Confidence 99999999999999999999999999999999999999884 99999999999874 2222222 11 23
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-hcCC-CeeeEeecceEEEEEEeecCCccchh
Q psy14484 301 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-ITHP-KIINFRQKGMIWAFDVIIEDPEQIET 378 (430)
Q Consensus 301 ~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~ 378 (430)
...+.+||+++|++++++.++|+.++++++.+++++++++|.++|+++ ..+| .+..+++.|+++++++. + ..
T Consensus 337 ~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~~~ie~~-~-----~~ 410 (461)
T d1ohwa_ 337 PYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTP-D-----ES 410 (461)
T ss_dssp TTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECS-S-----HH
T ss_pred ccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEEEEEEcC-C-----HH
Confidence 356889999999999999999999999999999999999999999998 6665 57789999999999987 4 33
Q ss_pred HHHHHHHHHHHCCcEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 379 FSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 379 ~a~~~~~~l~~~Gv~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+.++++.|+++|+++.+.+ ++|||.|++++|++||++++++|+++|.+
T Consensus 411 ~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 411 IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 46789999999999998865 79999999999999999999999999986
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.8e-35 Score=279.39 Aligned_cols=351 Identities=14% Similarity=0.154 Sum_probs=253.1
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCC-CHHHHHHHHHHHhhccccccC----CCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLS----NLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~~~----~~~~~~~~~l~~~l~ 87 (430)
...++.+.+|+ ++++.||++||||+|+ ++||++ ||+|++++.+++++++..... ....+.++++++.|+
T Consensus 27 ~~~~i~~~~g~---~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA 100 (401)
T d1fc4a_ 27 EERIITSAQQA---DITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLA 100 (401)
T ss_dssp CCCCBCSCSSS---EEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHH
T ss_pred cceeccCCCCC---eEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHH
Confidence 34566777776 7999999999999885 679986 999999999999987543211 124688889999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+++ +.+.+++++||++|+..+++.+.. +..+|+.+...|.+.......+..+ ...++
T Consensus 101 ~~~--g~e~al~~~SG~~An~~~i~~l~~---------~~d~i~~d~~~h~s~~~G~~~~~a~------------~~~~~ 157 (401)
T d1fc4a_ 101 AFL--GMEDAILYSSCFDANGGLFETLLG---------AEDAIISDALNHASIIDGVRLCKAK------------RYRYA 157 (401)
T ss_dssp HHH--TCSEEEEESCHHHHHHTTHHHHCC---------TTCEEEEETTCCHHHHHHHHTSCSE------------EEEEC
T ss_pred Hhh--cCCceEEecchhhhhHHHHHHhcC---------CCcEEEeCCcchHHHHccccccCce------------EEEEc
Confidence 999 778999999999999999987753 3445556667776655444433321 12222
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
..+ .++++.+.+.+++.+.+..++++|+ ++++.|.+.| |+++.++|++||++||+||+|+
T Consensus 158 ~~d--------------~~~le~~~~~~~~~~~~~~liv~eg-v~s~~G~~~~----L~~l~~L~~~~~a~LivDeah~- 217 (401)
T d1fc4a_ 158 NND--------------MQELEARLKEAREAGARHVLIATDG-VFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA- 217 (401)
T ss_dssp TTC--------------HHHHHHHHHHHHHTTCSSEEEEEES-EETTTTEECC----HHHHHHHHHHTTEEEEEECTTT-
T ss_pred CCC--------------hHHHHHHHHHhhhcccCceEEEEcC-CCCCCCchhh----hhHHHHHHhhcCcEEEehhhhc-
Confidence 210 1244444444444456778999999 9999998888 9999999999999999999998
Q ss_pred CCCccc--ccccccCCC--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHH
Q psy14484 248 CGRTGK--FFACEHAEI--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALAT 321 (430)
Q Consensus 248 ~g~~g~--~~~~~~~~~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~ 321 (430)
++..|. .+..++.++ .+|++ ++||+++| .+.|++.+++++++.+.. ..++ +..+.+.+|..++++.++
T Consensus 218 ~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg--~~Gg~v~g~~~~~~~l~~--~~~~--~~~s~~l~p~~~~aa~~~ 291 (401)
T d1fc4a_ 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGG--ASGGYTAARKEVVEWLRQ--RSRP--YLFSNSLAPAIVAASIKV 291 (401)
T ss_dssp TTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCS--SSCEEEEECHHHHHHHHH--HCHH--HHHSCCCCHHHHHHHHHH
T ss_pred cccccCCCCccchhccCCCCCeEEEeeccccccc--CCcccccCCHHHHHHHHc--CChh--hhhcCCCCHHHHHHHHhh
Confidence 444443 223445554 35655 79999964 467889999999887764 1122 223345567777778888
Q ss_pred HHHHhh-cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---
Q psy14484 322 LEIFNK-DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 322 l~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
++.+.. ++++++++++.+++++.+... ..+. ....+.++.+.+. + ...+..+++.|+++||++.+.
T Consensus 292 l~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~---~~~~~pIv~v~~~-~-----~~~a~~~~~~L~~~Gi~v~~i~~P 361 (401)
T d1fc4a_ 292 LEMVEAGSELRDRLWANARQFREQMSAA-GFTL---AGADHAIIPVMLG-D-----AVVAQKFARELQKEGIYVTGFFYP 361 (401)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCB---CCSSSSEEEEEEE-C-----HHHHHHHHHHHHHTTEECCEECTT
T ss_pred hcccccCHHHHHHHHHHHHHHHhhhccc-CCcc---CCCCCCEEEEEEC-C-----HHHHHHHHHHHHHCCceEEeECCC
Confidence 886654 567899999999999998876 2221 1122344445555 3 222568999999999998752
Q ss_pred ----C-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 398 ----G-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 398 ----~-~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+ ..+|++++..+|+||||+++++|+++.+++
T Consensus 362 tVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 362 VVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp SSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 459999999999999999999999998875
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.9e-32 Score=257.57 Aligned_cols=342 Identities=15% Similarity=0.129 Sum_probs=254.3
Q ss_pred CceeEEeecCCceeEEEECCCCEEEecccccccccCCCC-CHHHHHHHHHHHhhccccc----cCCCCCHHHHHHHHHHH
Q psy14484 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVM----LSNLTHKPVIKLSEKLS 87 (430)
Q Consensus 13 ~~~~~~~~~~~~~~~~~d~~g~~~lD~~~~~~~~~lG~~-~p~v~~a~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~ 87 (430)
.+..+.++.|. ++ ..||++|+||+|+ ++||.+ ||++++++.+++++++... ...+.++.+.++++.|+
T Consensus 21 ~~~~~~~~~g~---~i-~~~g~~~l~f~s~---dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA 93 (383)
T d1bs0a_ 21 RRYPVAQGAGR---WL-VADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELA 93 (383)
T ss_dssp CCCCCSBCSSS---EE-EETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHH
T ss_pred cccccCCCCCC---eE-EECCeEEEEEEcc---cccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHH
Confidence 44556777777 45 5899999999985 789985 9999999999999875431 22356688999999999
Q ss_pred hhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeC
Q psy14484 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIIT 167 (430)
Q Consensus 88 ~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (430)
+++ +.+.+++++||+.|+..++..+. .+..+++.+...|.+.......+.. ..+.
T Consensus 94 ~~~--g~e~al~~~SG~~an~~~i~al~---------~~~d~v~~d~~~h~si~~g~~~~~~--------------~~~~ 148 (383)
T d1bs0a_ 94 EWL--GYSRALLFISGFAANQAVIAAMM---------AKEDRIAADRLSHASLLEAASLSPS--------------QLRR 148 (383)
T ss_dssp HHH--TCSEEEEESCHHHHHHHHHHHHC---------CTTCEEEEETTCCHHHHHHHHTSSS--------------EEEE
T ss_pred Hhc--CCCceEEecccchhhHHHHHhhc---------CCCceEEeeccccHHHhhccccCCC--------------cceE
Confidence 999 67899999999999999998776 4455667777888776555443331 2233
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC
Q psy14484 168 TPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247 (430)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g 247 (430)
+++ +|++++++.+.+.+++..+|++|+ ++++.|.+.| +++|.++|++||++|++||+|+
T Consensus 149 ~~h---------------nd~~~le~~l~~~~~~~~~vv~e~-v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~- 207 (383)
T d1bs0a_ 149 FAH---------------NDVTHLARLLASPCPGQQMVVTEG-VFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG- 207 (383)
T ss_dssp ECT---------------TCHHHHHHHHHSCCSSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-
T ss_pred ecc---------------hHHHHHHHHhcccCCCceEEEecC-CCCCCCcccc----hhHHHHHHHhcCcEEEeeccee-
Confidence 444 489999999998877788999999 9999999988 9999999999999999999998
Q ss_pred CCCccc--ccccccCCCCCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHH
Q psy14484 248 CGRTGK--FFACEHAEIWPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLE 323 (430)
Q Consensus 248 ~g~~g~--~~~~~~~~~~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 323 (430)
+|..|. ....+.+++.++++ ++||+++. ..|+++++.++.+.+.. ..+. +..+...+|..++++.++++
T Consensus 208 ~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~--~~~~--~~~s~~~~p~~~aa~~~a~~ 280 (383)
T d1bs0a_ 208 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQ--FARH--LIYSTSMPPAQAQALRASLA 280 (383)
T ss_dssp TTTSSGGGCCHHHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHH--HCHH--HHSSBCCCHHHHHHHHHHHH
T ss_pred eeecCCcccchHHHcCCccccccccccccccc---cccccccchhHHHHHHh--hchh--hhhcccccchHHHHHHHHHH
Confidence 544443 23356777777766 57777764 56889999998888765 1222 33444556777777888888
Q ss_pred HHhh---cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---
Q psy14484 324 IFNK---DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 324 ~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
+++. +...+++.++..++++.|+++ +. ........++.+.+. + ...+..+.+.|+++||++.+.
T Consensus 281 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~---g~-~~~~~~s~Ii~v~~g-~-----~~~a~~~~~~L~~~Gi~v~~~~~P 350 (383)
T d1bs0a_ 281 VIRSDEGDARREKLAALITRFRAGVQDL---PF-TLADSCSAIQPLIVG-D-----NSRALQLAEKLRQQGCWVTAIRPP 350 (383)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHTTS---SC-EECSCCSSBCCEEEE-S-----HHHHHHHHHHHHHTTEECCEECTT
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhc---CC-ccCCCCCCEEEEEEC-C-----HHHHHHHHHHHHHCCceEEEEcCC
Confidence 7654 345567778888888888765 21 111223334444444 2 122568999999999998652
Q ss_pred ----C-CEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 398 ----G-NTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 398 ----~-~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
+ ..+|++++..+|+||||+++++|+.+
T Consensus 351 tVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 351 TVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp SSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 2 46999999999999999999998764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.97 E-value=7.1e-29 Score=234.36 Aligned_cols=331 Identities=15% Similarity=0.119 Sum_probs=240.7
Q ss_pred ECCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhcccc----ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCch
Q psy14484 30 DVSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGA 104 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgt 104 (430)
+.++++++||+|+ ++||. .||++++++.+++++++.. ....+..+.++++++.|++++ +.+.+++++||.
T Consensus 41 ~~~~~~~~~FsSn---dYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~--g~e~all~~sG~ 115 (396)
T d2bwna1 41 DGGKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH--QKEAALVFSSAY 115 (396)
T ss_dssp TSCEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT--TCSEEEEESCHH
T ss_pred CCCCeEEEEEEcc---cccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHh--CCCceeeeecch
Confidence 3356899999995 78998 5999999999999986543 123355689999999999999 678999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
.||..++.++... +++.+|+.+...|.+....+..+..+ ... +++
T Consensus 116 ~An~~~i~~l~~~-------~~~d~i~~D~~~Hasi~~g~~ls~a~------------~~~--f~H-------------- 160 (396)
T d2bwna1 116 NANDATLSTLRVL-------FPGLIIYSDSLNHASMIEGIKRNAGP------------KRI--FRH-------------- 160 (396)
T ss_dssp HHHHHHHHHHHHH-------STTCEEEEETTCCHHHHHHHHHSCCC------------EEE--ECT--------------
T ss_pred HHHHHHHHHHhcc-------cCCCceeehhhhhhccchhhhccccC------------ceE--eec--------------
Confidence 9999999876542 45668888888888766665555422 122 343
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc--cccccCC
Q psy14484 185 RCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAE 261 (430)
Q Consensus 185 ~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~--~~~~~~~ 261 (430)
||++++++.++.. +.+...|++|. ++++.|.+.| +++|.++|++|++.|++||+|+ +|..|.. +..++++
T Consensus 161 -nd~~~l~~l~~~~~~~~~~~iv~eg-vySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~G~~~~~~ 233 (396)
T d2bwna1 161 -NDVAHLRELIAADDPAAPKLIAFES-VYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGAGVAERDG 233 (396)
T ss_dssp -TCHHHHHHHHHHSCTTSCEEEEEES-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSCCHHHHHT
T ss_pred -chHHHhhhHHhhhcccCceeEEEEe-eccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccccchhhcC
Confidence 3778888887765 45677899999 9999999999 9999999999999999999997 6555541 2234444
Q ss_pred C--CCcee--eeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhc---CHHHHH
Q psy14484 262 I--WPDFL--CLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKD---NILQRI 334 (430)
Q Consensus 262 ~--~~d~~--~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~---~~~~~~ 334 (430)
+ ..|++ ||||++|+. -|++++++++.+.+.. ..+++.++. ..+|..++++.++++++..+ ..++.+
T Consensus 234 ~~~~~di~~gTlsKa~g~~---Gg~v~~~~~~i~~l~~--~~~~~ifSt--alpp~~~aa~~~al~i~~~~~~~~~r~~l 306 (396)
T d2bwna1 234 LMHRIDIFNGTLAKAYGVF---GGYIAASARMVDAVRS--YAPGFIFST--SLPPAIAAGAQASIAFLKTAEGQKLRDAQ 306 (396)
T ss_dssp CGGGCSEEEEESSSTTCSC---CEEEEECHHHHHHHHH--HCHHHHTSB--CCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred Cceeeeeeeeccccccccc---ccccchhHHHHHHHHh--hcchhhhcc--cCcHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 4 24555 799999863 3688999999888875 233333332 33566667777888876542 345667
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec--------CCEEEEeC
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI--------GNTVYLMP 405 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~--------~~~lR~~~ 405 (430)
+.+.+++++.+..+ .++... ....++.+.+. + ...+..+++.|+ ++||++.+- ...+||++
T Consensus 307 ~~~~~~~~~~l~~~-g~~~~~---~~spIvpv~ig-~-----~~~~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~l 376 (396)
T d2bwna1 307 QMHAKVLKMRLKAL-GMPIID---HGSHIVPVVIG-D-----PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTP 376 (396)
T ss_dssp HHHHHHHHHHHHHH-TCCBCC---CSSSCEEEECC-C-----HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECC
T ss_pred HHHHHHHHHHHHhc-CCCcCC---CCCCEEEEEeC-C-----HHHHHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEe
Confidence 77888999988776 333211 12334444444 2 122467888865 679987752 25799999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~ 424 (430)
+..||++||+.++++|+++
T Consensus 377 sa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 377 SPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp CTTSCHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHh
Confidence 9999999999999999874
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.96 E-value=6.3e-28 Score=230.45 Aligned_cols=343 Identities=11% Similarity=0.083 Sum_probs=226.5
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.+|+.+|||..|. ..+. .+|.|+++++++++.... +....+..++++.+++++.+..+ ..+++|++|+|+++|+
T Consensus 27 ~~g~~vi~l~~G~--p~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al 103 (388)
T d1j32a_ 27 AEGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI 103 (388)
T ss_dssp TTTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred HCCCCeEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHH
Confidence 3688899998773 3343 478999999998876432 22223344667778888877654 5677999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++++++. +++.|++.+|+|.++......... ..+.++....... .-|
T Consensus 104 ~~~~~~~~~--------~gd~Vlv~~P~y~~~~~~~~~~~~-------------~~v~~~~~~~~~~----------~~d 152 (388)
T d1j32a_ 104 FNLMLAMIE--------PGDEVIIPAPFWVSYPEMVKLAEG-------------TPVILPTTVETQF----------KVS 152 (388)
T ss_dssp HHHHHHHCC--------TTCEEEEESSCCTHHHHHHHHTTC-------------EEEEECCCGGGTT----------CCC
T ss_pred HHHHHHHhC--------CCCEEEEcCCCcHHHHHHHHHhcC-------------eEEEEeccccccc----------CCC
Confidence 999988765 678999999999887543332222 1122222111100 017
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccC-----C
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHA-----E 261 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~-----~ 261 (430)
+++|++.++ ++++++++.. ++|++| ...+.+.+++|.++|+++|+++|+||+|..+...+.... .... +
T Consensus 153 ~~~l~~~~~---~~~~~~~~~~-P~NPTG-~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~ 227 (388)
T d1j32a_ 153 PEQIRQAIT---PKTKLLVFNT-PSNPTG-MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE 227 (388)
T ss_dssp HHHHHHHCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH
T ss_pred HHHHHHhCC---CCCeEEEECC-CCCCCC-cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCccccc
Confidence 899998875 4566666665 678888 667888999999999999999999999987755543211 1111 1
Q ss_pred CCCceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHH
Q psy14484 262 IWPDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDM 338 (430)
Q Consensus 262 ~~~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~ 338 (430)
...-+.+|||.++ .| +|+|++++++++++.+.. .........+..++.++...+...++ .+..+.++++.
T Consensus 228 ~~i~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T d1j32a_ 228 RSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATK------IQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERR 300 (388)
T ss_dssp TEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred ceeEecCChhhhhcch-hHeEEEEECHHHHHHHHH------hhhhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 1112447999987 46 899999999999877654 22334455667777666665542110 12334445555
Q ss_pred HHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCH
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNK 411 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~ 411 (430)
+.+.+.|+++ +++....++|.+ +++.+. .... . ..+++++|+ ++||.+.|+ .+++|++++ .++
T Consensus 301 ~~~~~~l~~~---~g~~~~~p~gg~~l~~~l~-~~~~-~---~~~~~~~ll~~~gV~v~pG~~F~~~~~~Rls~~--~~~ 370 (388)
T d1j32a_ 301 RYMLDALNAM---PGLECPKPDGAFYMFPSIA-KTGR-S---SLDFCSELLDQHQVATVPGAAFGADDCIRLSYA--TDL 370 (388)
T ss_dssp HHHHHHHHTC---TTCBCCCCCBTTEECCBCG-GGTC-C---HHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC--SCH
T ss_pred HHHHHHHHhC---CCCEecCCCceEEEEEECC-CCCC-C---HHHHHHHHHHhCCEEEEeccccCCCCeEEEEEe--CCH
Confidence 5555555543 444444455544 444444 2111 1 246777765 569999986 378999764 689
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14484 412 NEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 412 e~i~~~~~~l~~~l~~~~ 429 (430)
+++++++++|+++++.++
T Consensus 371 e~l~~al~rl~~~l~~l~ 388 (388)
T d1j32a_ 371 DTIKRGMERLEKFLHGIL 388 (388)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.96 E-value=2.9e-27 Score=225.50 Aligned_cols=337 Identities=12% Similarity=0.071 Sum_probs=221.0
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAV 107 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~ 107 (430)
.+|+++|||..|. ..|. .+|+|++++.+++.+... +....+..++++.+++++.+..+ .++++|++|+|+++|+
T Consensus 28 ~~G~~vi~l~~g~--p~~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al 104 (382)
T d1b5pa_ 28 RQGVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQAL 104 (382)
T ss_dssp HTTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHH
T ss_pred hCCCCeEECCCCC--CCCC-CCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHH
Confidence 3688899998873 3343 478999999998876432 22223344677778777776654 4677999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARC 186 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (430)
..++++++. +++.|++.+|+|+++.......+. ....++.. .+....
T Consensus 105 ~~~~~~l~~--------~gd~vl~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~----------- 152 (382)
T d1b5pa_ 105 FNLFQAILD--------PGDEVIVLSPYWVSYPEMVRFAGG-------------VVVEVETLPEEGFVP----------- 152 (382)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEECCGGGTTCC-----------
T ss_pred HHHHHHhCC--------CCCEEEECCCCcHHHHHHHHHhcC-------------eEEEEecccccccCC-----------
Confidence 999998875 568899999999987544333222 11223221 111111
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccC--CCCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA--EIWP 264 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~--~~~~ 264 (430)
|++++++.++ ++++++++.. ++|++| ...+.+.+++|.++|++||+++|.||+|..+.+.+........ +...
T Consensus 153 d~~~l~~~~~---~~~~~i~~~~-P~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i 227 (382)
T d1b5pa_ 153 DPERVRRAIT---PRTKALVVNS-PNNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTL 227 (382)
T ss_dssp CHHHHHTTCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEE
T ss_pred CHHHHHHhCC---CCCeEEEECC-CCCCcc-hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEE
Confidence 7888887774 5677666666 778888 6678899999999999999999999999988666653322111 1111
Q ss_pred ceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHH-HhhcC----HHHHHHHHH
Q psy14484 265 DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEI-FNKDN----ILQRISQDM 338 (430)
Q Consensus 265 d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~-~~~~~----~~~~~~~~~ 338 (430)
-+.++||.++ .| +|+|++++++++++.+.. .........+.....++.+.+.. ..... ..+.++++.
T Consensus 228 ~~~s~SK~~~~~G-lR~G~~~~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (382)
T d1b5pa_ 228 TVNGAAKAFAMTG-WRIGYACGPKEVIKAMAS------VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRR 300 (382)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhccCcH-hheEEEEECHHHHHHHHH------HHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhh
Confidence 2347899987 56 899999999998877654 22334444455555444444431 11122 223344444
Q ss_pred HHHHHHHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHH
Q psy14484 339 KKITKALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKN 412 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e 412 (430)
+.+.+.++.. + +....++| .++++++. .... . ...+.+.|+++||.+.|+ .+++|+++ ..++|
T Consensus 301 ~~~~~~l~~~---g-~~~~~p~gg~~~~~~~~-~~~~-~---~~~~~~~l~e~gV~v~PG~~F~~~~~iRis~--~~~~e 369 (382)
T d1b5pa_ 301 DLLLEGLTAL---G-LKAVRPSGAFYVLMDTS-PIAP-D---EVRAAERLLEAGVAVVPGTDFAAFGHVRLSY--ATSEE 369 (382)
T ss_dssp HHHHHHHHHH---T-CCBCCCSBTTEEEEECT-TTCS-S---HHHHHHHHHHTTEECEESGGGTCTTEEEEEC--CSCHH
T ss_pred hHHHHHHhhc---C-CeEecCCceEEEeEeCC-CCCC-C---HHHHHHHHHHCCEEEEeCcccCCCCeEEEEE--cCCHH
Confidence 4555555443 2 22333444 55555554 2211 1 357888999999999986 37899965 46889
Q ss_pred HHHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQTF 425 (430)
Q Consensus 413 ~i~~~~~~l~~~l 425 (430)
+|++++++|++++
T Consensus 370 ~l~~al~rl~~~L 382 (382)
T d1b5pa_ 370 NLRKALERFARVL 382 (382)
T ss_dssp HHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.95 E-value=8.9e-27 Score=219.93 Aligned_cols=323 Identities=14% Similarity=0.168 Sum_probs=215.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVAL 111 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al 111 (430)
++.++|||++| .+++| .+|.+++++.+.+..... |++....+|++.+++.++.++++|++++|+++++..++
T Consensus 20 ~p~~~idls~~--~np~~-~p~~~~~a~~~~~~~~~~-----Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~ 91 (355)
T d1lc5a_ 20 SPDQLLDFSAN--INPLG-MPVSVKRALIDNLDCIER-----YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVA 91 (355)
T ss_dssp CGGGSEECSSC--CCTTC-CCHHHHHHHHHTGGGGGS-----CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred ChhheEEccCC--CCCCC-CCHHHHHHHHHHHHHhcc-----CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHH
Confidence 44578999887 78898 478899999987766542 33333357888888888888889999999999888766
Q ss_pred HHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 112 KMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 112 ~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
.+. .++.+++..+.|+.+........ .+...++.+...... ..+++
T Consensus 92 ~~~----------~~~~~~v~~p~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~-----------~~~~~ 137 (355)
T d1lc5a_ 92 SGL----------KPRRAMIVTPGFAEYGRALAQSG-------------CEIRRWSLREADGWQ-----------LTDAI 137 (355)
T ss_dssp HHH----------CCSEEEEEESCCTHHHHHHHHTT-------------CEEEEEECCGGGTTC-----------CCTTH
T ss_pred hhh----------ccccccccCCccceecccccccc-------------ccceeeeeeccCCcc-----------ceeee
Confidence 543 23444556678866533332222 222344443221111 11233
Q ss_pred HHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc---eee
Q psy14484 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD---FLC 268 (430)
Q Consensus 192 e~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d---~~~ 268 (430)
++.+ ..+++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|..|...+..... .....+. +.+
T Consensus 138 ~~~~---~~~~~~v~l~n-P~NPtG-~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~-~~~~~~~~i~~~S 211 (355)
T d1lc5a_ 138 LEAL---TPDLDCLFLCT-PNNPTG-LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIP-ALKDNPHIWVLRS 211 (355)
T ss_dssp HHHC---CTTCCEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGG-GCTTCTTEEEEEE
T ss_pred eecc---ccccceeeeec-ccCccc-ccchhhhhhhhhhhccccccccccccceeeeeeecccccc-cccccccceeecc
Confidence 3333 35677777777 788888 5668899999999999999999999999877554432211 1111222 347
Q ss_pred eecccC-CCccccEEEEEcHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHH
Q psy14484 269 LSKGIT-GGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKKITKAL 345 (430)
Q Consensus 269 ~sK~l~-gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~l~~~l 345 (430)
|||.++ .| +|+|+++++.+. .+.+.. +..++..+.+++.++.++|+... .....+++++..+++.+.|
T Consensus 212 ~SK~~~l~G-lR~G~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l 282 (355)
T d1lc5a_ 212 LTKFYAIPG-LRLGYLVNSDDAAMARMRR--------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL 282 (355)
T ss_dssp STTTTTCTT-TCCEEEECCCHHHHHHHHH--------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccc-ccccceeccchhhhHHHHh--------hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 999987 56 899999998654 444443 34556778888888777765211 1223455566666666666
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-------CCEEEEeCCCCCCHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-------GNTVYLMPPYILNKNEIQHMT 418 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~ 418 (430)
.++ +++...+..|.++++.+. .+ +.++++.|+++||++.++ .+++||++. +++++++++
T Consensus 283 ~~~---~~~~~~p~~~~f~~~~~~-~~-------~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRis~~---~~~e~~~li 348 (355)
T d1lc5a_ 283 CQL---PLLTVYPGRANYLLLRCE-RE-------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR---SAAQNERLL 348 (355)
T ss_dssp HTS---TTEEECCCSSSEEEEEES-CT-------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC---CHHHHHHHH
T ss_pred hhc---CCcEECCCCCEEEEEECC-CC-------HHHHHHHHHHCCcEEEeCccCCCCCCCEEEEEeC---CHHHHHHHH
Confidence 554 444444666777777766 42 135888999999999874 268999865 899999999
Q ss_pred HHHHHHH
Q psy14484 419 SAIFQTF 425 (430)
Q Consensus 419 ~~l~~~l 425 (430)
++|++++
T Consensus 349 ~aL~~il 355 (355)
T d1lc5a_ 349 AALRNVL 355 (355)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9988764
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=2.8e-26 Score=219.23 Aligned_cols=336 Identities=14% Similarity=0.074 Sum_probs=218.9
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc-ccccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCchHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgteA~~ 108 (430)
++++|||..| ...++ .++.|++++.++++... .+....+..++++++++++.+..+ ...++|++|+|+++++.
T Consensus 24 ~~dvi~l~~g--~p~~~-~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~ 100 (388)
T d1gdea_ 24 MKDVISLGIG--EPDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFL 100 (388)
T ss_dssp CTTCEECCCC--SCCSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHH
T ss_pred CCCeEECCCC--CCCCC-CCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHH
Confidence 3568898776 33444 47899999999887642 222223444677777777765432 24568999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARC 186 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 186 (430)
.++.+++. +++.|++.+|+|.++.......+. ..+.++... .++.
T Consensus 101 ~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~------------ 147 (388)
T d1gdea_ 101 MGLSAFLK--------DGEEVLIPTPAFVSYAPAVILAGG-------------KPVEVPTYEEDEFRL------------ 147 (388)
T ss_dssp HHHTTTCC--------TTCEEEEEESCCTTHHHHHHHHTC-------------EEEEEECCGGGTTCC------------
T ss_pred HHHHHhcC--------CCCEEEECCCCcHHHHHHHHHcCC-------------EEEEeecccccCCCC------------
Confidence 99887765 678999999999987555443332 222333211 1122
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCCCCc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEIWPD 265 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~~~d 265 (430)
|+++|++.++ ++++++++.. ++|++| ...+.+.+++|.++|++||+++|.||+|..+...+... ........++
T Consensus 148 d~~~l~~~~~---~~~~~i~~~~-P~NPtG-~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (388)
T d1gdea_ 148 NVDELKKYVT---DKTRALIINS-PCNPTG-AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFE 222 (388)
T ss_dssp CHHHHHHHCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGG
T ss_pred CHHHHHHhCc---cCCeEEEECC-CcCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCC
Confidence 7899998885 4677777766 778888 66788999999999999999999999999875544322 1221221222
Q ss_pred ----eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHH
Q psy14484 266 ----FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQ 336 (430)
Q Consensus 266 ----~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~ 336 (430)
+-+|||.++ .| +|+|++++++++.+.+.. .........+.+...++.++++..+. ......+++
T Consensus 223 ~~i~~~S~SK~~~~~G-lR~G~ii~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 295 (388)
T d1gdea_ 223 RTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVK------FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDR 295 (388)
T ss_dssp GEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCChhhccCcc-ccEEEEEeeccchhhhhh------ccccccccccccchhhHHHHHhhccchhHHHHHHHHHHH
Confidence 337999987 47 899999999988777654 22344455566666666555532111 122233334
Q ss_pred HHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPY 407 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~ 407 (430)
....+.+.+... .. ....+. |.++++++. +... . +.++++.|+ +.||.+.|+ .+++|++++
T Consensus 296 ~~~~~~~~l~~~---~~-~~~~p~gg~fl~~~l~-~~~~-~---~~~~~~~ll~e~gV~v~PG~~F~~~~~~~iRis~~- 365 (388)
T d1gdea_ 296 RRKLVWKRLNEM---GL-PTVKPKGAFYIFPRIR-DTGL-T---SKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYA- 365 (388)
T ss_dssp HHHHHHHHHHHT---TC-CCCCCCBTTEECCBCG-GGTC-C---HHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECC-
T ss_pred hhhhhhhhhhhc---cc-cccCCCceEEEEEECC-CCCC-C---HHHHHHHHHHhCCEEEEechhhCCCCCCEEEEEec-
Confidence 444444444432 22 223344 455555554 3111 1 356777765 569999875 368999764
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
.+++++++++++|++++++
T Consensus 366 -~~~e~l~~al~rL~~~l~e 384 (388)
T d1gdea_ 366 -TAYEKLEEAMDRMERVLKE 384 (388)
T ss_dssp -SCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHh
Confidence 6889999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.94 E-value=8.8e-25 Score=208.96 Aligned_cols=343 Identities=13% Similarity=0.046 Sum_probs=212.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~ 109 (430)
.|+++++|..|. ..|. .+|+|++|+.++++...+.+. .+..++++++++++.+.++ ..+++|++|+|+++|+..
T Consensus 29 ~g~~vi~l~~g~--pdf~-~p~~v~~al~~~~~~~~~~Y~-~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~ 104 (394)
T d1c7na_ 29 VGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYT-GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN 104 (394)
T ss_dssp CCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSB-CCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred cCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCC-CCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhh
Confidence 567888876552 2332 578999999999877533222 3344666777777776654 466799999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
+++++.. +++.|++.++.|.++.......... .++++..... .....|.+
T Consensus 105 ~~~~~~~--------pgd~vi~~~p~~~~~~~~~~~~g~~---------------~v~~~~~~~~-------~~~~~d~~ 154 (394)
T d1c7na_ 105 AVREFTK--------PGDGVIIITPVYYPFFMAIKNQERK---------------IIECELLEKD-------GYYTIDFQ 154 (394)
T ss_dssp HHHHHCC--------TTCEEEECSSCCTHHHHHHHTTTCE---------------EEECCCEEET-------TEEECCHH
T ss_pred hhccccc--------cccccccccCcccchhhHHhhhhhc---------------cccccccccc-------ccccchhh
Confidence 9998875 6788999999998775544443321 1211110000 00001566
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc-cc--C---CCC
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC-EH--A---EIW 263 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~-~~--~---~~~ 263 (430)
.++..+. ..+++++++.. ++|++| .+.+.+.+++|.++|++|++++|+||+|..+...+..... .. . ...
T Consensus 155 ~~~~~~~--~~~~~~i~l~~-P~NPTG-~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 230 (394)
T d1c7na_ 155 KLEKLSK--DKNNKALLFCS-PHNPVG-RVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKT 230 (394)
T ss_dssp HHHHHHT--CTTEEEEEEES-SBTTTT-BCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTE
T ss_pred hhhhhhc--cccceEEEecc-cccccc-eeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccce
Confidence 6676664 35687888877 888999 6678888999999999999999999999987554432111 11 1 111
Q ss_pred CceeeeecccCC-CccccEEEEEcH-HHHHhhhccCCcccccccCCCCC-CHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 264 PDFLCLSKGITG-GYLPLSLVMTTD-KIYNSIYYKNNINIFLHSHSYSG-NPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 264 ~d~~~~sK~l~g-G~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
..+.++||.++- | +|+|++++++ .+.+.+.. .....+... .....+++........ .++..+.+++..
T Consensus 231 i~~~s~SK~~~~~G-~R~g~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 303 (394)
T d1c7na_ 231 ITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTK------SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQ 303 (394)
T ss_dssp EEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHH------HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eecccccccccccc-cccccccccChhhhhhhhh------hhhhccccccccccchhhhhhhcchhhhhcccccccchhh
Confidence 223468898764 5 8999988875 45555543 111122222 2323333322222111 122333334444
Q ss_pred HHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-------CCEEEEeCCCCC
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMPPYIL 409 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-------~~~lR~~~~~~~ 409 (430)
+.+.+.++.. .+.+....++|.+ +++++. .... . ..++++.|+++ ||.+.|+ .+++||++ ..
T Consensus 304 ~~~~~~l~~~--~~~~~~~~p~g~~~~~~~~~-~~~~-~---~~~~~~~Ll~~~gV~v~pG~~Fg~~~~~~iRis~--~~ 374 (394)
T d1c7na_ 304 RIVKDFFEVN--HPEIKAPLIEGTYLQWIDFR-ALKM-D---HKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINL--AA 374 (394)
T ss_dssp HHHHHHHHHH--CTTSBCCCCSBSSEEEEECG-GGCC-C---HHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEEC--CS
T ss_pred hhhhhhhhcc--ccceeecCCCceeEEEEECC-CCCC-C---HHHHHHHHHHhCCEEEEcchhhCCCCCCEEEEEE--eC
Confidence 4444444322 2333344455555 445554 2111 1 35788888766 9999874 36899965 46
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
++|+|++++++|+++++++
T Consensus 375 ~~e~i~eal~rl~~~l~~L 393 (394)
T d1c7na_ 375 PSSVIQESLERLNKALKDL 393 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999875
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=3.1e-25 Score=210.27 Aligned_cols=324 Identities=10% Similarity=0.080 Sum_probs=212.0
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 115 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~ 115 (430)
.||+..|. ..+. .+|.+++|+++.++....+. ......+|++.+++.++.++++|++|+|+++++..+++.+.
T Consensus 27 ~I~ls~g~--p~~~-~p~~i~~al~~~l~~~~~Y~----~~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~ 99 (368)
T d1v2da_ 27 AVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYA----PPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV 99 (368)
T ss_dssp CEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCC----CTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC
T ss_pred CEEecCCC--CCCC-CCHHHHHHHHHHhhcccCCC----CCcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhccc
Confidence 57776552 2222 46899999999876533221 11224567777788888888999999999999999998876
Q ss_pred HhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHHHHHHHHHHHH
Q psy14484 116 HYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIARCAIFDLEI 193 (430)
Q Consensus 116 ~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~ 193 (430)
. +.+.|++.+|+|+.+......... ....++.+ .+... .|++.+++
T Consensus 100 ~--------~~d~v~~~~p~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~-----------~d~~~l~~ 147 (368)
T d1v2da_ 100 G--------PGDEVVVLEPFFDVYLPDAFLAGA-------------KARLVRLDLTPEGFR-----------LDLSALEK 147 (368)
T ss_dssp C--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEEETTEEE-----------CCHHHHHT
T ss_pred c--------ccccccccCCcchhhhhHHHhcCC-------------ccceecccccccccc-----------CCHHHHHH
Confidence 5 678899999999877554443222 11222221 11111 17888888
Q ss_pred HHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccccc--ccCCCCCceeeeec
Q psy14484 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC--EHAEIWPDFLCLSK 271 (430)
Q Consensus 194 ~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~--~~~~~~~d~~~~sK 271 (430)
.++ +.++++++.. ++|++| ...+.+.+++|.++|++||+++|.||+|..+......... ...+....+.++||
T Consensus 148 ~~~---~~~~~i~~~~-p~NPtG-~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk 222 (368)
T d1v2da_ 148 ALT---PRTRALLLNT-PMNPTG-LVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGK 222 (368)
T ss_dssp TCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHH
T ss_pred hhc---cCceEEEEcC-CCCccc-ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccc
Confidence 875 4566666666 778888 6678888999999999999999999999755333221111 11111223457888
Q ss_pred ccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHH----HHHHHHHHHHHHHc
Q psy14484 272 GITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR----ISQDMKKITKALTS 347 (430)
Q Consensus 272 ~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~----~~~~~~~l~~~l~~ 347 (430)
.++..++|+|+++.++++.+.+.. .....+.+.+.+.+.++.+++.......+.+. ++++.+++.+.|++
T Consensus 223 ~~~~~G~R~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (368)
T d1v2da_ 223 RLEATGYRVGWIVGPKEFMPRLAG------MRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA 296 (368)
T ss_dssp HTTCGGGCCEEEECCTTTHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhh------hhhccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh
Confidence 665533899999999998877665 23444566677777767677765444444443 45555566666655
Q ss_pred hhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCEEEEeCCCCCCHHHHHHH
Q psy14484 348 LITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 348 l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~lR~~~~~~~t~e~i~~~ 417 (430)
+ + +....+.| .++++.+. . . . ..+.|.++||.+.|+ .+++||++ ..++++++++
T Consensus 297 ~---g-~~~~~p~g~~~~~~~l~-~-~---~-----~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~--~~~~e~i~~a 360 (368)
T d1v2da_ 297 M---G-LRVYVPEGTYFLMAELP-G-W---D-----AFRLVEEARVALIPASAFYLEDPPKDLFRFAF--CKTEEELHLA 360 (368)
T ss_dssp T---T-CCEECCSBSSEEEEECT-T-C---C-----HHHHHHHTCEECEEGGGGCSSSCCTTEEEEEC--CSCHHHHHHH
T ss_pred c---C-cEEecCCceeEEEEeCC-c-c---H-----HHHHHHhCCEEEEechhhCCCCCCCCEEEEEe--cCCHHHHHHH
Confidence 4 2 23344554 55555554 2 1 1 223466889999874 26899975 4689999999
Q ss_pred HHHHHHHH
Q psy14484 418 TSAIFQTF 425 (430)
Q Consensus 418 ~~~l~~~l 425 (430)
+++|++++
T Consensus 361 i~rL~~~l 368 (368)
T d1v2da_ 361 LERLGRVV 368 (368)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998864
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=1.7e-24 Score=206.87 Aligned_cols=345 Identities=14% Similarity=0.066 Sum_probs=219.4
Q ss_pred CCCCEEEecccccccccCCC-CCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGH-SNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASA 106 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA 106 (430)
.+|+++|++..|-... ..+ .++.+++++.+++..... +....+..++++++++.+.+.++ ..+++|++++|++++
T Consensus 27 ~~G~~vi~l~~G~P~~-~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~ 105 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVK-FDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 105 (395)
T ss_dssp HTTCCCEECCCCCGGG-TTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HCCCCeEECCCCCCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchh
Confidence 3688999988764221 233 467899999999876432 33334445677788888887754 456799999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC--CCCCCCCCCChhHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP--DSRNINKGNSANEIA 184 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 184 (430)
+.+++++... +++.|++.+|+|+.+.......+.. .+.++.. +.+..
T Consensus 106 ~~~~~~~~~~--------~Gd~vlv~~P~y~~~~~~~~~~g~~-------------~v~v~~~~~~~~~~---------- 154 (395)
T d1xi9a_ 106 LQLIFGALLD--------PGDEILVPGPSYPPYTGLVKFYGGK-------------PVEYRTIEEEDWQP---------- 154 (395)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHHTTCE-------------EEEEEEEGGGTSEE----------
T ss_pred hhhhhhhhcC--------CCCEEEEcCCccccchhhhhhcCCE-------------EEEEeccccccccc----------
Confidence 9999988765 5688999999998875554443321 1222211 11111
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|++++++.+. ++++++++.. ++|++| ...+.+.+++|.++|++|++++|.||+|..+...+.........-..
T Consensus 155 --d~~~~~~~~~---~~~~~v~l~~-P~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~ 227 (395)
T d1xi9a_ 155 --DIDDIRKKIT---DRTKAIAVIN-PNNPTG-ALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDV 227 (395)
T ss_dssp --CHHHHHHHCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSS
T ss_pred --hHHHHHHhhc---ccccEEEecC-CCCCcc-chhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCC
Confidence 7788887774 5667776666 788888 66788889999999999999999999998765544322211111112
Q ss_pred c---eeeeecccCC-CccccEEEEEc--HHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHH
Q psy14484 265 D---FLCLSKGITG-GYLPLSLVMTT--DKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQ 336 (430)
Q Consensus 265 d---~~~~sK~l~g-G~~~ig~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~ 336 (430)
. +-+|||.++. | +|+|+++.. ......+.. ........++..+.+++.++..++...+ -.+..+.+++
T Consensus 228 ~vi~~~S~SK~~~~~G-lRvG~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 303 (395)
T d1xi9a_ 228 PVIVMNGLSKVYFATG-WRLGYMYFVDPENKLSEVRE---AIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKE 303 (395)
T ss_dssp CEEEEEESTTTTCCGG-GCCEEEEEECTTCTTHHHHH---HHHHHHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CEEEEeCcchhcccch-hhcEeeEecCHHHHHHHHHH---HHHHhhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 3379998874 6 899987653 222222211 0001122344556666666666664110 0123344555
Q ss_pred HHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-------CCEEEEeCCC
Q psy14484 337 DMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-------GNTVYLMPPY 407 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-------~~~lR~~~~~ 407 (430)
+.+.+.+.|+++ +.+....++ |.++++++. ...... ..++++.|+ +.||.+.|+ .+++||++
T Consensus 304 ~~~~l~~~L~~~---~~~~~~~p~gg~~~~~~l~-~~~~~~---~~~~~~~ll~~~gV~v~PG~~Fg~~~~~~~Ris~-- 374 (395)
T d1xi9a_ 304 RRDYIYKRLNEI---PGISTTKPQGAFYIFPKIE-VGPWKN---DKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVF-- 374 (395)
T ss_dssp HHHHHHHHHHTS---TTEECCCCCBSSEECCEEC-SCSCSS---HHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEEC--
T ss_pred HHHHHHHHHHhC---CCceecCCCeeEEEeEECC-CCCCCC---HHHHHHHHHHhCCEEEEcChhhCCCCCCEEEEEe--
Confidence 666666666544 444444445 455556665 322111 135666554 669999885 36799965
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy14484 408 ILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~ 427 (430)
..+++++++++++|++++++
T Consensus 375 ~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 375 LPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhc
Confidence 56899999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=4.8e-25 Score=212.70 Aligned_cols=346 Identities=12% Similarity=0.078 Sum_probs=219.2
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc----cccCCCCCHHHHHHHHHHHhhcC---CCCCeEEEcCCch
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQ---YKLGHCFYGSDGA 104 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~---~~~~~v~~~~sgt 104 (430)
.+.++|||..|.....+ ...+.+.+++.+.++.... +....+..++++.+++.+.+..+ .++++|++|+|++
T Consensus 36 ~~~~~I~l~~G~Pd~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~ 114 (420)
T d1vp4a_ 36 ADKDAISFGGGVPDPET-FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ 114 (420)
T ss_dssp TSTTCEECCCCSCCGGG-SCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred CCCCcEecCCcCCCCcc-CCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence 45678888776432111 1234566777666654321 22233445677778888877654 3577999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+|+..++.+.+. +++.|++.+|+|..+......... ....++... ..
T Consensus 115 ~al~~~~~~~~~--------~Gd~Vlv~~P~y~~~~~~~~~~g~-------------~~~~~~~~~--~~---------- 161 (420)
T d1vp4a_ 115 QALDLIGKLFLD--------DESYCVLDDPAYLGAINAFRQYLA-------------NFVVVPLED--DG---------- 161 (420)
T ss_dssp HHHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTTC-------------EEEEEEEET--TE----------
T ss_pred hhHHHHHHhhhc--------cccccccccccccchhHHHHHHhh-------------hcccccccc--cc----------
Confidence 999999988765 678999999999876444333222 122232211 11
Q ss_pred HHHHHHHHHHHHhC------CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-c
Q psy14484 185 RCAIFDLEILLKKN------HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-C 257 (430)
Q Consensus 185 ~~d~~~le~~l~~~------~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~ 257 (430)
.+++.++..+.+. .....++++.+ .+|++| ...+.+.+++|.++|++|++++|+||+|..+.+.+.... .
T Consensus 162 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-p~NPtG-~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~ 238 (420)
T d1vp4a_ 162 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSN-FHNPAG-VTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 238 (420)
T ss_dssp -ECHHHHHHHHHHHHHTTCGGGEEEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred -cccchhhhhhhhhHHHhhccccceeeEecC-CCCccc-hhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccc
Confidence 1444444433221 23344555556 788888 667888899999999999999999999998765554221 1
Q ss_pred ---ccCCCCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh----hcCH
Q psy14484 258 ---EHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN----KDNI 330 (430)
Q Consensus 258 ---~~~~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~----~~~~ 330 (430)
...+...-+.+++|....| +|+|++++++++++.+.. .....+.+.+...++++...++... -.+.
T Consensus 239 ~~~~~~~~~i~~~s~sk~~~~G-~RiG~~~~~~~~i~~l~~------~~~~~~~~~~~~~q~~~a~~l~~~~~~~~~~~~ 311 (420)
T d1vp4a_ 239 FKIGGPERVVLLNTFSKVLAPG-LRIGMVAGSKEFIRKIVQ------AKQSADLCSPAITHRLAARYLERYDLLEQLKPT 311 (420)
T ss_dssp HHHHCTTTEEEEEESTTTTCGG-GCEEEEECCHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHH
T ss_pred cccccccceeEEeccccccccc-cccccccccchhhhhhhh------hhhhccccCchhhhhhhhhhcccccccccchhH
Confidence 1111111122466766667 899999999999888765 2222334445555555544443211 1234
Q ss_pred HHHHHHHHHHHHHHHHch-hcCCCeeeEeecce-EEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CC
Q psy14484 331 LQRISQDMKKITKALTSL-ITHPKIINFRQKGM-IWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GN 399 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~ 399 (430)
.+.+++..+.+.+.|++. ...+++....+.|. ++++.+. +... +.++++.|+++||.+.|+ .+
T Consensus 312 ~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~-~~~d-----~~~~~~~l~~~gV~v~PG~~F~~~~~~~~ 385 (420)
T d1vp4a_ 312 IELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP-EGFD-----TWEMFEYAKRKKVFYVPGRVFKVYDEPSP 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC-TTCC-----TTTTHHHHHHHTEECEEGGGGCTTCCCCS
T ss_pred HHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECC-CCCC-----HHHHHHHHHHCCeEEEechhhCCCCCCCC
Confidence 455666777777777665 45566555556655 5556665 3221 135778889999999875 25
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 400 TVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 400 ~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++|++++ ..+++++++++++|++++++.
T Consensus 386 ~iRls~~-~~~~e~l~~a~~rL~~~l~~~ 413 (420)
T d1vp4a_ 386 SMRLSFC-LPPDEKIVEGIKRLREVVLEY 413 (420)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC-cCCHHHHHHHHHHHHHHHHHh
Confidence 8999765 468899999999999998753
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=6.5e-24 Score=200.59 Aligned_cols=327 Identities=12% Similarity=0.109 Sum_probs=202.2
Q ss_pred CCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcE
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~ 128 (430)
.+|.|.+|+.++++.....+......+.++.+++++.+.++ .++++|++|+|+++++..++.++.. +++.
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~~--------~gd~ 84 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSE--------TGEG 84 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSC--------TTCE
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhccc--------cccc
Confidence 47899999999887643222222334677778888877764 4567999999999999999888764 5678
Q ss_pred EEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC--CCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEE
Q psy14484 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD--SRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206 (430)
Q Consensus 129 vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 206 (430)
|++.+|+|.++......... ....++... .... .|++.+++.+. ..++++++
T Consensus 85 Vlv~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------~d~~~~~~~~~--~~~~~~i~ 138 (361)
T d1d2fa_ 85 VVIHTPAYDAFYKAIEGNQR-------------TVMPVALEKQADGWF-----------CDMGKLEAVLA--KPECKIML 138 (361)
T ss_dssp EEEEESCCHHHHHHHHHTTC-------------EEEEEECEECSSSEE-----------CCHHHHHHHHT--STTEEEEE
T ss_pred cccccccccchhHHHHhhcc-------------eEEeecccccccccc-----------cccccchhhcc--cCCceeEE
Confidence 99999999877443333221 111222111 0001 17888888886 35788888
Q ss_pred EccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-ccccCCC--CCceeeeecccCC-CccccEE
Q psy14484 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-ACEHAEI--WPDFLCLSKGITG-GYLPLSL 282 (430)
Q Consensus 207 ~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~~~~~~--~~d~~~~sK~l~g-G~~~ig~ 282 (430)
+.. ++|++| ...+.+.+++|.++|+++|+++|+||+|.++.+.+... ....... ...+.++||.++- | +++|+
T Consensus 139 l~~-p~NPTG-~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g-~R~g~ 215 (361)
T d1d2fa_ 139 LCS-PQNPTG-KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPA-LTGAY 215 (361)
T ss_dssp EES-SCTTTC-CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGG-GCCEE
T ss_pred ecc-cccccc-cccchhhhhhhhhhhhhhheeeeeccccccccccccccccccccccccccccccccccccccc-cccee
Confidence 877 888998 56677889999999999999999999999875544321 1111111 1123357887764 5 89999
Q ss_pred EEEcH-HHHHhhhccCCccccc-ccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEe
Q psy14484 283 VMTTD-KIYNSIYYKNNINIFL-HSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITKALTSLITHPKIINFR 358 (430)
Q Consensus 283 ~~~~~-~~~~~~~~~~~~~~~~-~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 358 (430)
+.... ...+.... ... .......+..++.++..++.... .+.....++++.+.+.+.+... .+.+....
T Consensus 216 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~ 288 (361)
T d1d2fa_ 216 GIIENSSSRDAYLS-----ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA--FPELNWQI 288 (361)
T ss_dssp EEECSHHHHHHHHH-----HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCCC
T ss_pred eecchhHHHHHHhh-----hcccccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh--cccccccc
Confidence 87753 32222221 001 11222334444444444443211 1223333444444444444433 12222233
Q ss_pred ecc-eEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 359 QKG-MIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 359 ~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
++| .++++++. .... . ..+++++|+++ ||.+.|+ .+++|+++ ..+++++++++++|.++++++
T Consensus 289 p~gg~~~~~~l~-~~~~--~--~~~~~~~Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 289 PQSTYLAWLDLR-PLNI--D--DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp CSBCSEEEEECG-GGCC--C--HHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHHHH
T ss_pred cCceeEEEEEcc-CCCC--C--HHHHHHHHHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHHhc
Confidence 444 45556654 2111 1 35788887665 9999874 26899975 468899999999999999875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.93 E-value=1.8e-24 Score=207.64 Aligned_cols=350 Identities=13% Similarity=0.055 Sum_probs=216.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc----cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGAS 105 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgte 105 (430)
++.++|||..|.....+ ...+.+.+++.+.+..... ++...+..++++.+++.+.+.++ .++++|++|+|+++
T Consensus 27 ~~~~~i~l~~G~P~~~~-~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 27 ETSDVISLAGGLPAPET-FPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp TSSSCEECCCCCCCGGG-SCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHH
T ss_pred CCCCcEECCCCCCCccc-cCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchH
Confidence 34457787665332111 1223566777776654321 22233444677788888877654 56789999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++..+++++.. +++.|++.+|+|..+......... ....++....... . .
T Consensus 106 al~~~~~~l~~--------~gd~v~~~~P~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~-------~--~ 155 (403)
T d1wsta1 106 ALDLIGRVFLN--------PGDPIVVEAPTYLAAIQAFKYYDP-------------EFISIPLDDKGMR-------V--D 155 (403)
T ss_dssp HHHHHHHHHCC--------TTCEEEEEESCCHHHHHHHHTTCC-------------EEEEEEEETTEEC-------H--H
T ss_pred HHHHHHHHHhh--------cCCccccCCCcchhhhHHHhhccc-------------cceeEeecccCCc-------c--c
Confidence 99999998764 678899999999887554433222 1222322211100 0 0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cc---cCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CE---HAE 261 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~---~~~ 261 (430)
...+..+....+....+.++++.. ++|++| ...+.+.+++|.++|++|++++|.||+|..+.+.+.... .. ..+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~-p~NPtG-~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~ 233 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVST-FQNPAG-VTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYG 233 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSS
T ss_pred cccccchhhhhccccccccccccc-cCCCCC-ccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCC
Confidence 122223333333334555666666 888888 667788899999999999999999999998866554221 11 122
Q ss_pred CCCceeeeecccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh----cCHHHHHHHH
Q psy14484 262 IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK----DNILQRISQD 337 (430)
Q Consensus 262 ~~~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~----~~~~~~~~~~ 337 (430)
...-+.++||.++.| +|+|++++++++++.+.. .....+...+...+.+..+.+..... ....+.+++.
T Consensus 234 ~~i~~~S~SK~~~~G-~RiG~~i~~~~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (403)
T d1wsta1 234 RVIYLGTFSKILAPG-FRIGWVAAHPHLIRKMEI------AKQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPR 306 (403)
T ss_dssp CEEEEEESTTTTCGG-GCCEEEEECHHHHHHHHH------HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cEEEEccccceecCc-ccccccccchHHHHHHHH------HHhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHH
Confidence 222344789998767 899999999998877654 12233344455555444443332222 2233444455
Q ss_pred HHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------CCEEEEeCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------GNTVYLMPPY 407 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------~~~lR~~~~~ 407 (430)
.+.+.+.|.+... .++....+. |.++++.++ .+.. +..+++.|+++||.+.|+ .+++||+++.
T Consensus 307 ~~~~~~~L~~~~~-~~~~~~~p~gg~~~~~~~~-~~~~-----~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~ 379 (403)
T d1wsta1 307 RDAMLEALEEYMP-EGVEWTKPEGGMFVRVTLP-EGID-----TKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTY 379 (403)
T ss_dssp HHHHHHHHHHHCC-TTCEECCCSBSSEEEEECC-TTCC-----TTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSS
T ss_pred HHHHHHHHHhhcc-CCeEEeCCCceeEEEEECC-CCCC-----HHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecC
Confidence 5555555554311 223333333 556666665 4221 245888899999999875 2689998653
Q ss_pred CCCHHHHHHHHHHHHHHHHHhh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+++++++++++|++++++-+
T Consensus 380 -~~~~~l~~al~rl~~~l~~~~ 400 (403)
T d1wsta1 380 -VPEETIREGVRRLAETIKEEM 400 (403)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999988643
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=6.9e-25 Score=204.87 Aligned_cols=338 Identities=10% Similarity=0.005 Sum_probs=211.0
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSF 115 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~ 115 (430)
++||.+-..+. .+|+|++|++++.. + ...++..+...+|++.+++++ +.+++++++||++|+..|+++++
T Consensus 1 ~~~~~~~~~t~----p~p~v~~A~~~a~~--g--~~~yg~~p~~~~le~~lA~~~--G~~~~~~~~sGt~A~~~al~a~~ 70 (343)
T d1m6sa_ 1 MIDLRSDTVTK----PTEEMRKAMAQAEV--G--DDVYGEDPTINELERLAAETF--GKEAALFVPSGTMGNQVSIMAHT 70 (343)
T ss_dssp CEECSCGGGCC----CCHHHHHHHHTCCC--C--CGGGTCCHHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHHHC
T ss_pred CcccccccCCC----CCHHHHHHHHhhhc--C--CcccCCCHHHHHHHHHHHHHH--CCCeEEEeCCHHHHHHHHHHHHh
Confidence 37887765443 47999999876532 1 112356688899999999999 56789999999999999999887
Q ss_pred HhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q psy14484 116 HYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILL 195 (430)
Q Consensus 116 ~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 195 (430)
. ..+.++..++.++........... ......+.+..... .|++.+++.+
T Consensus 71 ~--------~g~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-----------~~~~~~~~~i 119 (343)
T d1m6sa_ 71 Q--------RGDEVILEADSHIFWYEVGAMAVL------------SGVMPHPVPGKNGA-----------MDPDDVRKAI 119 (343)
T ss_dssp C--------TTCEEEEETTCHHHHSSTTHHHHH------------TCCEEEEECEETTE-----------ECHHHHHHHS
T ss_pred c--------cCCceeccccccceeeeccccccc------------ccceeeccccccCc-----------cCHHHHHHhh
Confidence 5 455666655544332111111000 00111111111111 1677777777
Q ss_pred HhC---CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecc
Q psy14484 196 KKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKG 272 (430)
Q Consensus 196 ~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~ 272 (430)
... ...+..++++. ..++.|...++.+.+++|.++|++||+++++|++++++......+.........+..+++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (343)
T d1m6sa_ 120 RPRNIHFPRTSLIAIEN-THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLS 198 (343)
T ss_dssp CCSCTTSCCEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESS
T ss_pred hhhhccccccccccccc-ccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhcccccccccccc
Confidence 654 23566677776 56666668888999999999999999999999999855332222222112223455666665
Q ss_pred cCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCC
Q psy14484 273 ITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 273 l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 352 (430)
.+.++...+++....+....... .+. ..+.+.. ..+..++.................++..++.+.+.++....
T Consensus 199 ~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (343)
T d1m6sa_ 199 KGLCAPVGSVVVGDRDFIERARK---ARK-MLGGGMR--QAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSV 272 (343)
T ss_dssp STTCCSSCEEEEECHHHHHHHHH---HHH-HHTCCCS--STHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC
T ss_pred ccccccccccccccHHHHhhhHh---hCc-ccccccc--hhHHHHHhhhhhhhhhHHHHHHHHHHHHHhhhHHHHhccCc
Confidence 55543677888888877655443 000 1222222 22222222222223334555666667777777776662221
Q ss_pred CeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 353 KIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 353 ~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
... +....++.+.+. .... . +.++++.|+++||++.+. .+.+||+++..+|+|+||+++++|+++++++
T Consensus 273 ~~~--~~~~~~v~~~~~-~~~~-~---a~~l~~~L~~~Gi~v~~~~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 273 NPE--DVKTNMVILRTD-NLKV-N---AHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp CGG--GCCSSEEEEECT-TSSS-C---HHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCC--CCCceEEEEEeC-CCcc-c---HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 223456666554 3221 1 468999999999999875 4899999999999999999999999999885
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.93 E-value=1.3e-23 Score=202.34 Aligned_cols=347 Identities=14% Similarity=0.096 Sum_probs=218.9
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccc----cccCCCCCHHHHHHHHHHHhhcCC--C-CCeEEEcCCchHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH----VMLSNLTHKPVIKLSEKLSSLTQY--K-LGHCFYGSDGASAV 107 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~--~-~~~v~~~~sgteA~ 107 (430)
..||+..|. ..+ ..++.+++++++++..... +....+..++++.+++++.+.++. . .++|++|+|+++|+
T Consensus 27 ~~I~L~~G~--Pd~-~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al 103 (418)
T d2r5ea1 27 KPLNLGQGF--PDY-HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 103 (418)
T ss_dssp CCEECSSSC--CSS-CCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CCEEccCCC--CCC-CCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhh
Confidence 357766653 222 2467899999998865421 222233446778888888877653 3 36899999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++++++. +++.|++.+|+|+.+........... +.++...+.... ...+.....+
T Consensus 104 ~~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~--~~~~~~~~~~ 160 (418)
T d2r5ea1 104 YATIQGHVD--------EGDEVIIIEPFFDCYEPMVKAAGGIP-------------RFIPLKPNKTGG--TISSADWVLD 160 (418)
T ss_dssp HHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTCEE-------------EEEECEESCCSS--CEEGGGEECC
T ss_pred hhhhhhccc--------cccceeccccccchhhHHHHHcCCeE-------------EEEEeccccccc--chhhhhhhhh
Confidence 999998876 77899999999998865544433321 222221110000 0000000115
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc--cccccCCCCCc
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FACEHAEIWPD 265 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~--~~~~~~~~~~d 265 (430)
.+++++.. ...++++++.+ .+|++| ...+.+.+++|.++|++||+++|.||+|..+...+.. ......+..+.
T Consensus 161 ~~~~~~~~---~~~~~~~~i~~-p~NPtG-~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 161 NNELEALF---NEKTKMIIINT-PHNPLG-KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp HHHHHHHC---CTTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred HHHHhhhh---hccccceecCC-cCcccc-ccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccce
Confidence 56666554 35788888877 888998 5678888999999999999999999999877554431 11122222223
Q ss_pred ---eeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh-----hcCHH----H
Q psy14484 266 ---FLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN-----KDNIL----Q 332 (430)
Q Consensus 266 ---~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----~~~~~----~ 332 (430)
+.++||.++ .| +|+|++++++++++.+.. .....+++.+.+.+.++.+.+.... .+.+. +
T Consensus 236 ~i~~~S~SK~~~~pG-lRiG~~~~~~~~i~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~ 308 (418)
T d2r5ea1 236 TITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQM------VHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISG 308 (418)
T ss_dssp EEEEEEHHHHTTCGG-GCCEEEESCHHHHHHHHH------HHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred eeeeecCCccccCCC-cccccccccchhhhhhhh------cccccccccccchhhhccccccccccccccchhhHHHHHH
Confidence 337899987 46 899999999999887765 2233455566666655555443211 13344 3
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCC-------ccchhHHHHHHHHHHHC-CcEEeec------
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDP-------EQIETFSKKFFVAALKN-ELLLRPI------ 397 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-------~~~~~~a~~~~~~l~~~-Gv~~~~~------ 397 (430)
.++.+.+.+.+.|+++ ++....++|.+ +++++. ... ........+|++.|+++ ||.+.|+
T Consensus 309 ~~~~~r~~l~~~L~~~----g~~~~~P~gg~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~ 383 (418)
T d2r5ea1 309 ELMAKRDYMASFLAEV----GMNPTVPQGGYFMVADWS-SLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSE 383 (418)
T ss_dssp HHHHHHHHHHHHHHHT----TCEEEECSBSSEEEEECG-GGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCG
T ss_pred HHHHhhhhHHhhHhhc----CCcccCCCceeEEEEEcc-cccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCC
Confidence 3444555555555543 23344555554 455553 210 00011135788887655 9999875
Q ss_pred ------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 ------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 ------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+++|+++ ..++|+|++++++|++.+.
T Consensus 384 ~~~~~g~~~iRis~--~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 384 PNKHLGEDFVRYCF--FKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp GGHHHHTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred CCccCCCCEEEEEe--cCCHHHHHHHHHHHHHHHc
Confidence 25799965 4689999999999988763
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.93 E-value=8.4e-24 Score=201.32 Aligned_cols=340 Identities=13% Similarity=0.100 Sum_probs=218.6
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccC-----CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS-----NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
+.+.|+|..+ .|..+..|.+++.+.+......... ....+..+++++.+++++++++++|+|++|+|+|
T Consensus 6 ~~~~yld~~~------~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a 79 (381)
T d1elua_ 6 ANKTYFNFGG------QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG 79 (381)
T ss_dssp TTSEECCTTT------CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred CCCEEeeCCc------ccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHH
Confidence 4567888543 5556778999999887654322111 1122445678888999999888999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
++.++..+... +++.|++.+..|+........+ ......+...++.+...... .
T Consensus 80 ~~~~~~~l~~~-------~g~~i~~~~~~~~s~~~~~~~~---------~~~~g~~~~~v~~~~~~~~~----------~ 133 (381)
T d1elua_ 80 CDIVLWGLDWH-------QGDEILLTDCEHPGIIAIVQAI---------AARFGITYRFFPVAATLNQG----------D 133 (381)
T ss_dssp HHHHHHHSCCC-------TTCEEEEETTCCHHHHHHHHHH---------HHHHCCEEEEECCGGGSSSS----------C
T ss_pred hhhcchhhhhc-------CCceEEEeccccceeeeccccc---------cccccccccccccccccccc----------h
Confidence 99988766331 5677888777765432211110 01112233444433211110 0
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc----CCEEEEeccccCCCCcccccccccCCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY----NIHLIADEIAVGCGRTGKFFACEHAEI 262 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~----gi~li~DEv~~g~g~~g~~~~~~~~~~ 262 (430)
..+.+++.+ .++++++++.. +++++|.+.| +++|.++|+++ ++++++|++|+ ++.. .++....
T Consensus 134 ~~~~l~~~i---~~~t~~v~i~~-~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~-~g~~----~~~~~~~ 200 (381)
T d1elua_ 134 AAAVLANHL---GPKTRLVILSH-LLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSL----PLDFSRL 200 (381)
T ss_dssp HHHHHHTTC---CTTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTB----CCCTTTS
T ss_pred HHHHHHhhh---ccccccccccc-ccccccccch----hhHHHHHHhhcccccccccccccccc-cccc----ccccccc
Confidence 234444444 46899999999 9999999988 99999999985 68999999986 4432 1233344
Q ss_pred CCceeeee--cccCCCccccEEEEEcHHHHHhhhccCC-ccccc---------------ccCCCCCCHHHHHHHHHHHHH
Q psy14484 263 WPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNN-INIFL---------------HSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 263 ~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~-~~~~~---------------~~~t~~~~~~~~~aa~~~l~~ 324 (430)
.+|++++| |.+++. .++|+++.++++.+.+.+... ..... .....+.+.....+..++++.
T Consensus 201 ~~D~~~~s~~K~~~~p-~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~ 279 (381)
T d1elua_ 201 EVDYYAFTGHKWFAGP-AGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL 279 (381)
T ss_dssp CCSEEEEESSSTTCCC-TTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccc-chhhHHHhhHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhhh
Confidence 67888766 888775 578999999988776543100 00000 001112344455555566665
Q ss_pred Hhhc----CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--C
Q psy14484 325 FNKD----NILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--G 398 (430)
Q Consensus 325 ~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--~ 398 (430)
+... ...++.+++.+++.++|+++.....+.....++.++.|.+. ... . .+.+.+.|.++||.++.. +
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf~~~-~~~--~---~~~i~~~L~~~gi~v~~~~~~ 353 (381)
T d1elua_ 280 HQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-SPL--G---HRAIVQKLEEQRIYLRTIADP 353 (381)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-SSS--C---HHHHHHHHHHTTEECEEETTT
T ss_pred HHHhcccccchhhhhhHHHHHHHHHhcCCCeEecCCCCccccEEEEEcC-CCC--C---HHHHHHHHHhCCcEEEecCCC
Confidence 5432 23466777888888888876332222223345667777665 321 1 356888999999988754 4
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+++|+++++.+|++||++++++|++
T Consensus 354 ~~lRis~~~~nt~edid~ll~~l~e 378 (381)
T d1elua_ 354 DCIRACCHYITDEEEINHLLARLAD 378 (381)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=8.7e-24 Score=200.74 Aligned_cols=334 Identities=16% Similarity=0.156 Sum_probs=215.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~ 108 (430)
.|+++||+..|. ..+. .++.+++++.+.+..... +....+..++++++++.+.+..+ .+++++++|+|+++|+.
T Consensus 26 ~G~~vI~l~~G~--p~~~-~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~ 102 (375)
T d1o4sa_ 26 KGEDVINLTAGE--PDFP-TPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 102 (375)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred CCCCeEECCCcC--CCCC-CCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHH
Confidence 588899988773 3344 478899999998866432 22333445677777777776543 45779999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++++.. +++.|++.+|+|..+......... ....++.+...... .+.
T Consensus 103 ~~~~~l~~--------~gd~vlv~~P~y~~~~~~~~~~~~-------------~~~~~~~~~~~~~~----------~~~ 151 (375)
T d1o4sa_ 103 NAFMALLD--------PGDEVIVFSPVWVSYIPQIILAGG-------------TVNVVETFMSKNFQ----------PSL 151 (375)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCGGGTTC----------CCH
T ss_pred HHHHHHhC--------CCCEEEEccCccccchhhhhcccc-------------cccccccccccccc----------chh
Confidence 99998875 667899999999877544333222 11222222111110 145
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-cccCC---CCC
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-CEHAE---IWP 264 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~~~~~---~~~ 264 (430)
+.++... ..+++++++.. ++|++| ...+.+.+++|.++|++|+++||.||+|..+...+.... ....+ ...
T Consensus 152 ~~~~~~~---~~~~~~~~l~n-P~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i 226 (375)
T d1o4sa_ 152 EEVEGLL---VGKTKAVLINS-PNNPTG-VVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIV 226 (375)
T ss_dssp HHHHHTC---CTTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEE
T ss_pred HHHHHhh---ccCccEEEEeC-CCCCcc-CCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEE
Confidence 5555444 35677777776 788888 566789999999999999999999999986644332211 11122 222
Q ss_pred ceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q psy14484 265 DFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITK 343 (430)
Q Consensus 265 d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~ 343 (430)
-+.++||.++ .| +|+|++++++++.+.+.. .....+..........+...++.. .....+.++++.+.+.+
T Consensus 227 ~~~S~SK~~~l~G-~R~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~ 298 (375)
T d1o4sa_ 227 YINGFSKSHSMTG-WRVGYLISSEKVATAVSK------IQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVE 298 (375)
T ss_dssp EEEESTTTTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHH
T ss_pred EEeechhhccCCc-cccccccccccchhhhhh------hhccccccccccchhhhhhhcccc-hhhhHHHHHHHHHHHHH
Confidence 3447999988 56 899999999998877654 112223333444433333322211 12344556666777777
Q ss_pred HHHchhcCCCeeeEeecc-eEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeec-----CCEEEEeCCCCCCHHHHHH
Q psy14484 344 ALTSLITHPKIINFRQKG-MIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI-----GNTVYLMPPYILNKNEIQH 416 (430)
Q Consensus 344 ~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~ 416 (430)
.|++. ++....+.| .++++.+. .+ ..+++.+|+ ++||.+.|+ .+++||++. .+++++++
T Consensus 299 ~l~~~----g~~~~~p~gg~f~~~~~~-~~-------~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis~~--~~~e~l~~ 364 (375)
T d1o4sa_ 299 RLKKM----GVKFVEPEGAFYLFFKVR-GD-------DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFA--TSIERLTE 364 (375)
T ss_dssp HHHHT----TCCCCCCSBSSEEEEECS-SC-------HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHH
T ss_pred HHHhc----CceEecCCccEEEEEECC-CC-------HHHHHHHHHHhCCEEEEEccccCCCCeEEEEEc--CCHHHHHH
Confidence 77654 222334454 55566665 32 134566644 669999985 378999764 68999999
Q ss_pred HHHHHHHHHH
Q psy14484 417 MTSAIFQTFN 426 (430)
Q Consensus 417 ~~~~l~~~l~ 426 (430)
++++|+++++
T Consensus 365 al~rl~~~l~ 374 (375)
T d1o4sa_ 365 ALDRIEDFLN 374 (375)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999874
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=4.4e-24 Score=199.24 Aligned_cols=329 Identities=12% Similarity=0.070 Sum_probs=192.1
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~ 114 (430)
.+|||+|. ++.| .||+|++|++++... + ...++.++..+++++.++++++ ....++|++|||+||+.|++.+
T Consensus 3 ~~~~f~s~---n~~g-~~P~v~~A~~~a~~~--~-~~~~~~~~~~~~l~~~la~~~g-~~~~v~f~~sGt~An~~a~~~~ 74 (345)
T d1v72a1 3 PALGFSSD---NIAG-ASPEVAQALVKHSSG--Q-AGPYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAM 74 (345)
T ss_dssp CCCBCSCG---GGCC-CCHHHHHHHHHTTSS--C-CCSTTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTS
T ss_pred CCcCcCCC---CCCC-CCHHHHHHHHHHhcc--C-ccccCCCHHHHHHHHHHHHHHC-CCcEEEECCchHHHHHHHHHHH
Confidence 36899974 3444 699999999886432 1 1224577888999999999997 3457999999999999999987
Q ss_pred HHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q psy14484 115 FHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194 (430)
Q Consensus 115 ~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 194 (430)
+. ..+.++. ....|.+........ .........+. ++.... .+++.+++.
T Consensus 75 ~~--------~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~-----------~~~~~l~~~ 124 (345)
T d1v72a1 75 TP--------PWGNIYC-HPASHINNDECGAPE---------FFSNGAKLMTV-DGPAAK-----------LDIVRLRER 124 (345)
T ss_dssp CC--------TTEEEEE-CTTSHHHHSSTTHHH---------HHTTSCEEEEC-CCGGGC-----------CCHHHHHHH
T ss_pred Hh--------cCCcccc-ccccceeeechhhHH---------HhcCccccccc-cccccc-----------ccHHHhhhh
Confidence 65 2333333 233332211110000 00011111221 111111 177888888
Q ss_pred HHhCC---CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC--CCceeee
Q psy14484 195 LKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI--WPDFLCL 269 (430)
Q Consensus 195 l~~~~---~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~--~~d~~~~ 269 (430)
+.+.. ..+..++++. +.++.+...++.+.++++.++|++||+++++|+++++....+.......... ..+..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (345)
T d1v72a1 125 TREKVGDVHTTQPACVSI-TQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 203 (345)
T ss_dssp TTSSTTCTTSCEEEEEEE-ESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEE
T ss_pred hcccccccccccceeeee-eccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhcccccccccc
Confidence 87541 2345555555 5555555777888899999999999999999999986544333333322222 3456677
Q ss_pred ecccCCCccccEEEEEcHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHH
Q psy14484 270 SKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKAL 345 (430)
Q Consensus 270 sK~l~gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l 345 (430)
+|..+++ ...+........ ...... .......+...... ++.+++..+.... ...+..++.+++.+.+
T Consensus 204 ~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 275 (345)
T d1v72a1 204 GATKNGV-LAAEAIVLFNTSLATEMSY----RRKRAGHLSSKMRF---LSAQIDAYLTDDLWLRNARKANAAAQRLAQGL 275 (345)
T ss_dssp CCGGGTC-SSCEEEEESSGGGHHHHHH----HHHHTTCCCSSTHH---HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccccc-ccccccccchhhhhhhccc----cccccccccchhhH---HhhhhHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 7776665 344444444332 222211 11112222222222 2222223222222 2222333444444444
Q ss_pred HchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---CCEEEEeCCCCCCHHHHHHHHHHH
Q psy14484 346 TSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAI 421 (430)
Q Consensus 346 ~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---~~~lR~~~~~~~t~e~i~~~~~~l 421 (430)
. ..+++... +..+.++++.+. ..+.+.|+++|+.+... .+.+||+++..+|+||||+++++|
T Consensus 276 ~---~~~g~~~~~p~~~niv~~~~~-----------~~~~~~L~~~gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~l 341 (345)
T d1v72a1 276 E---GLGGVEVLGGTEANILFCRLD-----------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341 (345)
T ss_dssp T---TCTTEEEESCCCSSEEEEEEC-----------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred H---hcCCcEeccCCCccEEEEEcC-----------HHHHHHHHHcCCCccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4 44554332 334566666554 35778899999987543 479999999999999999999999
Q ss_pred HHH
Q psy14484 422 FQT 424 (430)
Q Consensus 422 ~~~ 424 (430)
+++
T Consensus 342 r~a 344 (345)
T d1v72a1 342 RLA 344 (345)
T ss_dssp HHT
T ss_pred HHh
Confidence 874
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=1.2e-23 Score=200.68 Aligned_cols=340 Identities=11% Similarity=0.092 Sum_probs=215.7
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVE 108 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~ 108 (430)
.+|..+||+..|. ..+. .++.+++++.+.......+....+..++++.+++.+.+..+ .++++|++|+|+++++.
T Consensus 25 ~~g~~vi~l~~G~--p~~~-~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~ 101 (389)
T d2gb3a1 25 KRGVRIHHLNIGQ--PDLK-TPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL 101 (389)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred HcCCCEEECCCCC--CCCC-CCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence 3688999987663 3332 36778888887654433333334455677888888887754 45779999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.++++.+. +++.|++.+|+|..+......... ....++.+...... +.
T Consensus 102 ~~~~~l~~--------~gd~V~i~~P~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------~~ 149 (389)
T d2gb3a1 102 FSFAVIAN--------PGDEILVLEPFYANYNAFAKIAGV-------------KLIPVTRRMEEGFA-----------IP 149 (389)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTHHHHHHHHHTC-------------EEEEEECCGGGTSC-----------CC
T ss_pred cccccccc--------CCCeEEEeCCCCccccccccccCc-------------cccccccccccccc-----------hh
Confidence 99988875 667899999999876544333222 11222222111110 11
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc--e
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD--F 266 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d--~ 266 (430)
+.++..+ .++++++++.. ++|++| ...+.+.+++|.++|++||+++|.||+|..+...+............. +
T Consensus 150 ~~~~~~~---~~~~~~~~l~n-P~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~ 224 (389)
T d2gb3a1 150 QNLESFI---NERTKGIVLSN-PCNPTG-VVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVI 224 (389)
T ss_dssp TTGGGGC---CTTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEE
T ss_pred hhhhhhc---ccCccEEEeCC-CCcccc-ccchHHHHHHHHhhcccCCEEEEEecccccccccccccccccccccccccc
Confidence 2222222 46778877777 888888 556889999999999999999999999998766554322211111122 3
Q ss_pred eeeecccCCCccccEEEEEcHHH-HHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHH
Q psy14484 267 LCLSKGITGGYLPLSLVMTTDKI-YNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKITK 343 (430)
Q Consensus 267 ~~~sK~l~gG~~~ig~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l~~ 343 (430)
.++||.++..++|+|+++++.+. ...+.. ...+.++.+++...++.+.+...+ -+...+.++++.+.+.+
T Consensus 225 ~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 297 (389)
T d2gb3a1 225 DSVSKKFSACGARVGCLITRNEELISHAMK-------LAQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLK 297 (389)
T ss_dssp EESTTTTTCGGGCCEEEECSCHHHHHHHHH-------HHHHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcccceeeeeccchhHHHHHhh-------hhhccccccccccccccccccccchhcccccccccccchhhhh
Confidence 36778877633899999997654 333332 133445556666666655553111 12334555666666666
Q ss_pred HHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHHHC------CcEEeec----------CCEEEEeCC
Q psy14484 344 ALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN------ELLLRPI----------GNTVYLMPP 406 (430)
Q Consensus 344 ~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~------Gv~~~~~----------~~~lR~~~~ 406 (430)
.|+++ +..... +..|.++++.++ .. . +.++++.|+++ |+.+.|+ .+++||++
T Consensus 298 ~L~~~---~~~~~~~p~~g~~~~~~lp-~~-~-----~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~- 366 (389)
T d2gb3a1 298 KLEEH---GLKRFTKPSGAFYITAELP-VE-D-----AEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIAC- 366 (389)
T ss_dssp HHHHT---TCCCBCCCSBSSEEEEECS-SS-C-----HHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEEC-
T ss_pred hhhhh---ccccccCCCceEEEEEeCC-CC-C-----HHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEE-
Confidence 66654 333233 334566666665 31 1 35677777654 6666664 25799965
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 407 YILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 407 ~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
..+++++++++++|++++++.+
T Consensus 367 -~~~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 367 -VLEKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999998875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.91 E-value=7.1e-24 Score=207.11 Aligned_cols=362 Identities=14% Similarity=0.070 Sum_probs=212.4
Q ss_pred CCCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHH
Q psy14484 31 VSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 31 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~a 110 (430)
..++.++||.+.+++...++ ...+ .+..+.. .+..++...+|++.+++++ +.++++|++||++|++.|
T Consensus 39 ~~~~~~id~~sd~~t~~~~~---~~~a----~~~~gd~---~y~~~~~~~~le~~~a~l~--g~~~~~~~~sGt~A~~~a 106 (465)
T d1ax4a_ 39 PSSAVYIDLLTDSGTNAMSD---HQWA----AMITGDE---AYAGSRNYYDLKDKAKELF--NYDYIIPAHQGRGAENIL 106 (465)
T ss_dssp CGGGCSEECSCSSSCCCEEH---HHHH----HHHTCCC---CSSSCHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHH
T ss_pred CccCeeeecccccchhhhhH---HHHH----HHhhhhh---hhccChHHHHHHHHHHHHH--CCCEEEECCCcHHHHHHH
Confidence 35677899999877654442 1112 2222221 2345677789999999999 678999999999999999
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhc-cCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA-VTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~ 188 (430)
+++++.+....+.++...+ . +.+|+.+..... ..+..... ........+.+. +.... .|+
T Consensus 107 ~~~~~~~g~~~~~~~~~~i-~--~~~h~~t~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~------------~d~ 168 (465)
T d1ax4a_ 107 FPVLLKYKQKEGKAKNPVF-I--SNFHFDTTAAHVELNGCKAIN---IVTEKAFDSETYDDWKGD------------FDI 168 (465)
T ss_dssp HHHHHHHHHHTTCCSSCEE-E--ESSCCHHHHHHHHHTTCEEEE---CBCGGGGCTTSCCTTTTC------------BCH
T ss_pred HHHHHHHHHhcCCCCCeEE-e--ccchhhhhHHHHHHcCCeeec---ccccccCCCCCCCCccCc------------cCH
Confidence 9999988766665343333 2 456665443322 22211100 000000000111 11111 288
Q ss_pred HHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccC------CCCcccccccccCC
Q psy14484 189 FDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG------CGRTGKFFACEHAE 261 (430)
Q Consensus 189 ~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g------~g~~g~~~~~~~~~ 261 (430)
+++++++++. ++.++++++++ +++++|..+++.+++++|+++|++||++||+||++.. .++.+..+.....+
T Consensus 169 ~~l~~~i~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (465)
T d1ax4a_ 169 KKLKENIAQHGADNIVAIVSTV-TCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKE 247 (465)
T ss_dssp HHHHHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHH
T ss_pred HHHHHHHHhhccccccceeecc-ccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccccccchhh
Confidence 9999999876 35688899999 9999999999999999999999999999999999862 22222222222222
Q ss_pred C------CCceeeeecccCCCccccEEEEEcHHH--HHhhhccCCcccccccCCCCCCHH-HHHHHHHHHHHHhhcCHHH
Q psy14484 262 I------WPDFLCLSKGITGGYLPLSLVMTTDKI--YNSIYYKNNINIFLHSHSYSGNPL-ACCAALATLEIFNKDNILQ 332 (430)
Q Consensus 262 ~------~~d~~~~sK~l~gG~~~ig~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~~~~~~~~~~ 332 (430)
+ ..|++++||..+++....|+++.++.. ...... .........++.+... +..++...+.....+++.+
T Consensus 248 i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~ 325 (465)
T d1ax4a_ 248 VIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ--RCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLH 325 (465)
T ss_dssp HHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHH--HHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccccccceeEeecccCcccccceeEeecchHHHHHhhhc--cccccccCCCcchhhHHHHHHHhhhhHHhhhHHHHH
Confidence 1 257889998777654556777776532 222111 0001112333333332 3332223333323345666
Q ss_pred HHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchh--HHHHHHHHHHHCCcEEee--------------
Q psy14484 333 RISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIET--FSKKFFVAALKNELLLRP-------------- 396 (430)
Q Consensus 333 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~a~~~~~~l~~~Gv~~~~-------------- 396 (430)
+..++.+++.+.|+++ ..+.+....+.+.++..... -....... ......+.+.+.||....
T Consensus 326 ~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~ 403 (465)
T d1ax4a_ 326 YRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKL-VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGE 403 (465)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTT-CTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCS
T ss_pred HHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhh-cCCCccccchhHHHHHHHHHhcCceeccccccccccccccCC
Confidence 6777788999999876 33433333332332221111 01111111 123344455667876542
Q ss_pred ----cCCEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 397 ----IGNTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ----~~~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
..+.+||++ ...+|+||+|.++++|++++.+
T Consensus 404 ~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~ 439 (465)
T d1ax4a_ 404 QKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEK 439 (465)
T ss_dssp BCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred ccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 125799974 4678999999999999998764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.91 E-value=6.3e-23 Score=197.21 Aligned_cols=346 Identities=11% Similarity=0.023 Sum_probs=210.1
Q ss_pred ECCCCEEEecccccccccCCC---CCHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhc--------CCCCCe
Q psy14484 30 DVSGKRYLDAISSWWVNLFGH---SNSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLT--------QYKLGH 96 (430)
Q Consensus 30 d~~g~~~lD~~~~~~~~~lG~---~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~ 96 (430)
..+++.+||+..|- ..+.. ..+.+.+++.+.+..... +....+..++++.+++++.+.+ +..+++
T Consensus 26 ~~~~~~vI~L~~G~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~ 103 (412)
T d1bw0a_ 26 SPSPKPIIKLSVGD--PTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDN 103 (412)
T ss_dssp CCSCSCCEECCCCC--TTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGG
T ss_pred CCCCCCcEECcCCC--CCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCe
Confidence 34667899987663 33332 245677888877654321 2222344467778888887653 246779
Q ss_pred EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCC
Q psy14484 97 CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176 (430)
Q Consensus 97 v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (430)
|++|+|+++|+..++++++. +++.|++.+|+|+++.......+. ..+.++.......
T Consensus 104 I~it~G~~~al~~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~G~-------------~~~~v~~~~~~~~-- 160 (412)
T d1bw0a_ 104 VVLCSGGSHGILMAITAICD--------AGDYALVPQPGFPHYETVCKAYGI-------------GMHFYNCRPENDW-- 160 (412)
T ss_dssp EEEESHHHHHHHHHHHHHCC--------TTCEEEEEESCCTHHHHHHHHTTC-------------EEEEEEEEGGGTT--
T ss_pred EEEecccccchhhhhhhhhc--------cccceeeeeccchhhhhhhhccCc-------------ccccccccccccc--
Confidence 99999999999999998875 678999999999887544443322 1222222110000
Q ss_pred CCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc-c
Q psy14484 177 GNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF-F 255 (430)
Q Consensus 177 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~-~ 255 (430)
..+++++++... ..++++++.. ++|++| ...+.+.+++|.++|++|++++|+||+|.++.+.+.. .
T Consensus 161 --------~~~~~~l~~~~~---~~~~~~~l~n-p~NPtG-~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~ 227 (412)
T d1bw0a_ 161 --------EADLDEIRRLKD---DKTKLLIVTN-PSNPCG-SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPN 227 (412)
T ss_dssp --------EECHHHHHHHCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTT
T ss_pred --------chhhHHHHhhhh---cccccccccc-cccccc-ccchhhhccccccccccCCeeeechhhHHHhccCCCCCc
Confidence 016777777664 5667777666 778888 5668899999999999999999999999988666532 1
Q ss_pred cc-cc---CCCCCce---eeeecccCCCccccEEEEEcHHH------HHhhhccCCcccccccCCCCCCHHHHHHHHHHH
Q psy14484 256 AC-EH---AEIWPDF---LCLSKGITGGYLPLSLVMTTDKI------YNSIYYKNNINIFLHSHSYSGNPLACCAALATL 322 (430)
Q Consensus 256 ~~-~~---~~~~~d~---~~~sK~l~gG~~~ig~~~~~~~~------~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l 322 (430)
.. .. ....... .++||.++..++|+|++++++.. +..... ....+.+.....++++.+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 300 (412)
T d1bw0a_ 228 ATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKR-------VGMLVCGPCTVVQAALGEAL 300 (412)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHH-------HHHHHTCSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCccCccCCCCcccccccchhhcchhhhhhhcc-------ccccccCCchhhhhhccccc
Confidence 11 11 1111112 25899887522899999986432 222111 11122233444444333333
Q ss_pred HHHhhc----CHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceE-EEEEEeecCCccchhHHHHHHHHHHH-CCcEEee
Q psy14484 323 EIFNKD----NILQRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIEDPEQIETFSKKFFVAALK-NELLLRP 396 (430)
Q Consensus 323 ~~~~~~----~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~ 396 (430)
.. ..+ ...++++++.+.+.+.|.+ .+++....+.|.+ ++..+. ...........+++++|++ .||.+.|
T Consensus 301 ~~-~~~~~~~~~~~~~~~~r~~~~~~l~~---~~g~~~~~p~gg~~l~~~~~-~~~~~~~~~~~~~~~~ll~~~gV~v~P 375 (412)
T d1bw0a_ 301 LN-TPQEHLDQIVAKIEESAMYLYNHIGE---CIGLAPTMPRGAMYLMSRID-LEKYRDIKTDVEFFEKLLEEENVQVLP 375 (412)
T ss_dssp HS-SCHHHHHHHHHHHHHHHHHHHHHHTT---STTEEECCCCBTTEEEEEEC-GGGBSSCCSHHHHHHHHHHHHCEECEE
T ss_pred cc-ccccccccccchhHHHHHHHHHHHHH---hcCceecCCCCceEEEEeCC-hhhcCCCCCHHHHHHHHHHhCCEEEEe
Confidence 21 111 2233344444455455443 3444444555544 444443 2111010113568887765 5999998
Q ss_pred c-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 397 I-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+ .+++||++ ..+++++++++++|++++++
T Consensus 376 G~~Fg~~g~iRis~--~~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 376 GTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp GGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEE--cCCHHHHHHHHHHHHHHHHh
Confidence 5 37899965 56899999999999998875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=2.6e-23 Score=195.83 Aligned_cols=286 Identities=12% Similarity=0.149 Sum_probs=190.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
.|+.....+|++++++.++.++++|++|+|++|++..++++... |++..|++.+|+|..+.......+.
T Consensus 52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~-------pgd~~Vl~~~P~y~~~~~~~~~~g~---- 120 (354)
T d1fg7a_ 52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCE-------PGKDAILYCPPTYGMYSVSAETIGV---- 120 (354)
T ss_dssp SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCC-------TTTCEEEECSSSCTHHHHHHHHHTC----
T ss_pred cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhc-------cccccccccccccccchhhhhccCc----
Confidence 45555556889999999998999999999999999999998865 2445788889999876544333222
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+..++..+++.. |+++++..+ .+++++++.+ .+|++|.. .+.+.++.+.+.+
T Consensus 121 ---------~v~~~~~~~~~~~------------d~~~l~~~~----~~~~~v~~~~-pnNPtG~~-~~~~~~~~~~~~~ 173 (354)
T d1fg7a_ 121 ---------ECRTVPTLDNWQL------------DLQGISDKL----DGVKVVYVCS-PNNPTGQL-INPQDFRTLLELT 173 (354)
T ss_dssp ---------EEEECCCCTTSCC------------CHHHHHTSC----TTEEEEEEES-SCTTTCCC-CCHHHHHHHHHHH
T ss_pred ---------eeecccccccccc------------chhhhhhcc----cccceeeccC-CCccceeE-eeecccccccccc
Confidence 2233333333332 777776654 3677888888 88888844 5677788888777
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCce---eeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF---LCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~---~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+ ++.++|+||.+..|...... .......+.+ -+|||.++ .| +|+|++++++++++.+.. ....+
T Consensus 174 ~-~~~~~iidd~~~~f~~~~~~--~~~~~~~~~~iv~~S~SK~~~laG-lRiGy~i~~~~~i~~l~~--------~~~~~ 241 (354)
T d1fg7a_ 174 R-GKAIVVADEAYIEFCPQASL--AGWLAEYPHLAILRTLSKAFALAG-LRCGFTLANEEVINLLMK--------VIAPY 241 (354)
T ss_dssp T-TTCEEEEECTTGGGSGGGCS--GGGTTTCTTEEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHH--------HSCSS
T ss_pred c-ccccccccccchhhcccccc--chhhcccccceEEeCCccccCCCc-cccccccccchhhhhhhh--------hcCcc
Confidence 6 46777888877666433221 1112223333 37999987 46 899999999999988876 33445
Q ss_pred CCCHHHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHH
Q psy14484 309 SGNPLACCAALATLEIFNKD---NILQRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFF 384 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~ 384 (430)
..+.+++.++.+++..-... ...+++.+..+++.+.+.++ +....+ +..|+|+++.+. + +..++
T Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~---~~~~~~~p~~~~f~~~~~~-~--------~~~~~ 309 (354)
T d1fg7a_ 242 PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEI---PCVEQVFDSETNYILARFK-A--------SSAVF 309 (354)
T ss_dssp CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTEEEECCCSSSEEEEEET-T--------HHHHH
T ss_pred chhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHHHHhC---CCcceeCCCCceEEEEeCC-C--------HHHHH
Confidence 55665555554443221111 22233445555555555544 544333 456777777665 3 35789
Q ss_pred HHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 385 VAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 385 ~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+.|+++||++.++ .+++|+++. +++|+++++++|++
T Consensus 310 ~~L~~~gIlvr~~~~~~~~~~~lRisig---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 310 KSLWDQGIILRDQNKQPSLSGCLRITVG---TREESQRVIDALRA 351 (354)
T ss_dssp HHHHHTTEECEECTTSTTCTTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHHCCcEEecCCCCCCCCCEEEEEeC---CHHHHHHHHHHHhh
Confidence 9999999999874 379999865 88999999999873
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.6e-23 Score=196.18 Aligned_cols=349 Identities=11% Similarity=0.143 Sum_probs=218.4
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhcc---ccccCCCCCHHHHHHHHHHHhhcCCCC---CeEEEcCCchHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE---HVMLSNLTHKPVIKLSEKLSSLTQYKL---GHCFYGSDGASA 106 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~v~~~~sgteA 106 (430)
+..+||+..|. ..+. .++.+++++++++.... .+....+..++++.+++.+.+.++... ++|++|+|+++|
T Consensus 24 ~~dvI~l~~G~--p~~~-~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~a 100 (418)
T d1w7la_ 24 EHDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGA 100 (418)
T ss_dssp TSCCEECCCCS--CSSC-CCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHH
T ss_pred CCCCEECCCCC--CCCC-CCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHH
Confidence 55688887763 2233 36788899999886532 123333445677888888888766443 379999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCC-CCCCCCCCCCChhHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITT-PDSRNINKGNSANEIAR 185 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 185 (430)
+..+++++.. +++.|++.+++|+.+.......+.... .++. |...........+.+ .
T Consensus 101 l~~~~~~l~~--------~g~~vlv~~p~~~~y~~~~~~~g~~~v-------------~~~~~~~~~~~~~~~~~~~~-~ 158 (418)
T d1w7la_ 101 LFTAFQALVD--------EGDEVIIIEPFFDCYEPMTMMAGGRPV-------------FVSLKPGPIQNGELGSSSNW-Q 158 (418)
T ss_dssp HHHHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTCEEE-------------EEECEECC---CCSEEGGGE-E
T ss_pred HHHHHHhhcc--------CCceeeccccccchhHHHHHHcCCEee-------------ccccccccccccccccccCc-c
Confidence 9999998875 678999999999988654444333211 1110 000000000000000 0
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-cc-ccCCCC
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-AC-EHAEIW 263 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~~-~~~~~~ 263 (430)
.|.++++... ...++++++.. .+|++| ...+.+.+++|.++|+++++++|.||+|..+.+.+... .. ...+..
T Consensus 159 ~d~~~~~~~~---~~~~~~i~~~~-p~NPtG-~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~ 233 (418)
T d1w7la_ 159 LDPMELAGKF---TSRTKALVLNT-PNNPLG-KVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 233 (418)
T ss_dssp CCHHHHHHHC---CTTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred cchhhhhccc---cccccceeccC-cCCccc-ccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccc
Confidence 1344444433 35677777766 788888 66788889999999999999999999999886655421 11 222222
Q ss_pred Cc---eeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-----cCHH---
Q psy14484 264 PD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-----DNIL--- 331 (430)
Q Consensus 264 ~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-----~~~~--- 331 (430)
+. +.++||.++. | +|+|++++++++++.+.. .....+++.+.+++.++.+++..... ..+.
T Consensus 234 ~~~i~~~S~SK~~~~pG-~RvG~~v~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 306 (418)
T d1w7la_ 234 ERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRT------VHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQF 306 (418)
T ss_dssp GGEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHH------HHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHH
T ss_pred cccceecccCccccCCC-Ccccccccchhhhhhhcc------ccccccccccchhhHHHHHHhhhccccccccccccccc
Confidence 22 3478998774 6 899999999998877765 33445666677777777766653221 2333
Q ss_pred -HHHHHHHHHHHHHHHchhcCCCeeeEeecceE-EEEEEeecC--------CccchhHHHHHHHHHH-HCCcEEeec---
Q psy14484 332 -QRISQDMKKITKALTSLITHPKIINFRQKGMI-WAFDVIIED--------PEQIETFSKKFFVAAL-KNELLLRPI--- 397 (430)
Q Consensus 332 -~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~-~~~~~~~~~--------~~~~~~~a~~~~~~l~-~~Gv~~~~~--- 397 (430)
+.++++.+.+.+.|+++ + +...+++|.+ +++++. .. .........+++++|+ ++||.+.|+
T Consensus 307 ~~~~~~~r~~l~~~L~~~---g-~~~~~P~gg~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F 381 (418)
T d1w7la_ 307 PQAMQRCRDHMIRSLQSV---G-LKPLIPQGSYFLITDIS-DFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIF 381 (418)
T ss_dssp HHHHHHHHHHHHHHHHTT---T-CEEEECSBSSEEEEECH-HHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGG
T ss_pred hhhhhhhhhhhhhhhhhc---C-CcccCCCceeEEEEECc-ccccccchhccccccccHHHHHHHHHHHCCEEEEcchhh
Confidence 33444555555555543 2 3344455554 555553 10 0001111356777754 569999874
Q ss_pred ---------CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 398 ---------GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 398 ---------~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+++|+++ ..+++++++++++|++..
T Consensus 382 ~~~~~~~~~~~~iRis~--~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 382 YSVPHQKHFDHYIRFCF--VKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp SCHHHHTTSCSEEEEEC--CCCHHHHHHHHHHHHHHH
T ss_pred cCCCccCCCCCEEEEEE--cCCHHHHHHHHHHHHHHh
Confidence 26899964 568999999999998764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3e-22 Score=190.39 Aligned_cols=334 Identities=12% Similarity=0.099 Sum_probs=217.6
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccc-cccCCCCCHHHHHHHHHHHhhcCC--CCC-eEEEcCCchHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEH-VMLSNLTHKPVIKLSEKLSSLTQY--KLG-HCFYGSDGASAVE 108 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~--~~~-~v~~~~sgteA~~ 108 (430)
+.++||+..|. ..+. .++.+++++.+.+.+..+ +....+..++++.+++.+.+.++. .++ +|++|+|+++|+.
T Consensus 25 ~~~~i~l~~G~--Pd~~-~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~ 101 (382)
T d1u08a_ 25 QHQAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALY 101 (382)
T ss_dssp HTTCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHH
T ss_pred cCCCEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHH
Confidence 45678888773 3343 467889999998876432 233344557778888888887653 344 5999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH
Q psy14484 109 VALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188 (430)
Q Consensus 109 ~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 188 (430)
.+++++.. +++.|++.+++|+.+......... ....++.+...... |+
T Consensus 102 ~~~~~l~~--------~gd~vl~~~p~y~~~~~~~~~~g~-------------~~~~~~~~~~~~~~-----------d~ 149 (382)
T d1u08a_ 102 AAITALVR--------NGDEVICFDPSYDSYAPAIALSGG-------------IVKRMALQPPHFRV-----------DW 149 (382)
T ss_dssp HHHHHHCC--------TTCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECCTTTCCC-----------CH
T ss_pred HHHhhccc--------ccceEEEecccccchhhhhhhccc-------------cceecccccccccC-----------CH
Confidence 99998875 678899999999887554433222 11223333222222 77
Q ss_pred HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccc-c-cc---CCCC
Q psy14484 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA-C-EH---AEIW 263 (430)
Q Consensus 189 ~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~-~~---~~~~ 263 (430)
+++++.+. ++++++++.+ .+|++| ...+.+.+++|.++|++++++++.||++.-+...+.... . .. .+..
T Consensus 150 ~~l~~~~~---~~~~~i~l~~-P~NPtG-~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (382)
T d1u08a_ 150 QEFAALLS---ERTRLVILNT-PHNPSA-TVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERA 224 (382)
T ss_dssp HHHHHHCC---TTEEEEEEES-SCTTTC-CCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTE
T ss_pred HHHhhhhc---cCccEEEECC-CCcccc-cccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcE
Confidence 88887764 5677777777 788888 566778899999999999999999999875533332111 1 00 1111
Q ss_pred CceeeeecccC-CCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHH
Q psy14484 264 PDFLCLSKGIT-GGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKK 340 (430)
Q Consensus 264 ~d~~~~sK~l~-gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~ 340 (430)
.-+.++||.++ .| +|+|++++++++.+.+.. .....+++.+.+.+.++.++++...+ ......++++.+.
T Consensus 225 i~~~s~SK~~~~pG-~RiG~~v~~~~~~~~~~~------~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 297 (382)
T d1u08a_ 225 VAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRK------VHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDI 297 (382)
T ss_dssp EEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHH------HHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHH
T ss_pred EEEeeccccccCCc-ccchhhhccchhHHHHHh------hhcccccccccccccccccccccchHHHHHHHHHHHhhhhh
Confidence 22447889876 46 899999999998887665 23345567788888877777763211 1233333444444
Q ss_pred HHHHHHchhcCCCeeeEeecceEEE-EEEeecCCccchhHHHHHHHHHH-HCCcEEeec---------CCEEEEeCCCCC
Q psy14484 341 ITKALTSLITHPKIINFRQKGMIWA-FDVIIEDPEQIETFSKKFFVAAL-KNELLLRPI---------GNTVYLMPPYIL 409 (430)
Q Consensus 341 l~~~l~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~---------~~~lR~~~~~~~ 409 (430)
+.+.++ ..++....++|.++. +.+. .-...+ ..+++++|+ +.||.+.|+ .+++|+++ ..
T Consensus 298 l~~~~~----~~g~~~~~p~gg~~~~~~~~-~~~~~d---~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~--~~ 367 (382)
T d1u08a_ 298 LVNALN----ESRLEILPCEGTYFLLVDYS-AVSTLD---DVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCF--AK 367 (382)
T ss_dssp HHHHTT----SSSCEECCCCBSSEEEEECT-TTCCSC---HHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEEC--CS
T ss_pred hhhhhc----cCCcEEecCCceEEEEEecC-CCCCCC---HHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEE--eC
Confidence 333332 223444556655544 4443 211111 256788764 669999885 14789965 46
Q ss_pred CHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQ 423 (430)
Q Consensus 410 t~e~i~~~~~~l~~ 423 (430)
++|++++++++|++
T Consensus 368 ~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 368 KESTLLAAAERLRQ 381 (382)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhC
Confidence 88999999999875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.90 E-value=8e-22 Score=190.37 Aligned_cols=308 Identities=15% Similarity=0.107 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCC
Q psy14484 74 LTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149 (430)
Q Consensus 74 ~~~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~ 149 (430)
+..++++++++.+.+.++ .++++|++|+|+++|+..++++++. +++.|++..|+|+++........+.
T Consensus 85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~--------pGd~Vlv~~P~y~~~~~~~~~~~g~ 156 (431)
T d1m7ya_ 85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLAD--------PGEAVLIPTPYYPGFDRDLKWRTGV 156 (431)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCC--------TTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcC--------CCCEEEEeCCCchhHHHHHHHhcCc
Confidence 445677888888887653 4577999999999999999998865 6788999999998775443322221
Q ss_pred ccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
..+.++........ .|.+++++.+++. ..++.++++.. ++|++| ...+.+.++
T Consensus 157 ------------~~v~v~~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~~i~~~n-P~NPtG-~~~s~~~l~ 212 (431)
T d1m7ya_ 157 ------------EIVPIHCTSSNGFQ----------ITETALEEAYQEAEKRNLRVKGVLVTN-PSNPLG-TTMTRNELY 212 (431)
T ss_dssp ------------EEEEEECCGGGTSC----------CCHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTC-CCCCHHHHH
T ss_pred ------------eeccccccchhccc----------ccHHHhhhhhhhhhhccCcceEEEecC-cccccc-ccccccccc
Confidence 11222222111000 1556666666543 34677777776 788888 667889999
Q ss_pred HHHHHHHhcCCEEEEeccccCCCCcccccc-c-cc---CCC------CCc---eeeeecccC-CCccccEEEEEcHHHHH
Q psy14484 227 LVREICNNYNIHLIADEIAVGCGRTGKFFA-C-EH---AEI------WPD---FLCLSKGIT-GGYLPLSLVMTTDKIYN 291 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~-~~---~~~------~~d---~~~~sK~l~-gG~~~ig~~~~~~~~~~ 291 (430)
+|.++|++||+++|+||+|..+.+.+..+. . +. ... ... +.++||.++ .| +|+|+++.+++++.
T Consensus 213 ~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-~RiG~~~~~~~~i~ 291 (431)
T d1m7ya_ 213 LLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVV 291 (431)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHH
T ss_pred cccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCC-CccceeccchhhhH
Confidence 999999999999999999987655443211 1 10 000 011 337899987 46 89999999887654
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHH---HHh--hcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEE
Q psy14484 292 SIYYKNNINIFLHSHSYSGNPLACCAALATLE---IFN--KDNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWA 365 (430)
Q Consensus 292 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~---~~~--~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~ 365 (430)
.... ........+.....++.+.+. ..+ ..+..++++++.+.+.+.|++ .++...++. |.+++
T Consensus 292 ~~~~-------~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~gi~~~~p~gg~f~w 360 (431)
T d1m7ya_ 292 AAAT-------KMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK----SGISCLNGNAGLFCW 360 (431)
T ss_dssp HHHH-------HHGGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TTCEECCCCSSSEEE
T ss_pred HHHH-------HHhccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc----CCcEEecCCceeEEE
Confidence 4332 122222333343333333332 111 122333444455555555543 233344444 55666
Q ss_pred EEEeecCCcc-chhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPEQ-IETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 366 ~~~~~~~~~~-~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+++. ..... ......+++++|++ .||.+.|+ .+++|++++ ..+++++++++++|++++.+
T Consensus 361 ~~l~-~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 361 VDMR-HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp EECG-GGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHHH
T ss_pred EECc-cccccCcccCHHHHHHHHHHHCCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHHH
Confidence 6665 31111 11113467888764 59999985 368999764 45788999999999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.90 E-value=4.6e-22 Score=191.93 Aligned_cols=307 Identities=15% Similarity=0.082 Sum_probs=187.7
Q ss_pred CCCCHHHHHHHHHHHhhcC----CCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCC
Q psy14484 73 NLTHKPVIKLSEKLSSLTQ----YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTN 148 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~----~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~ 148 (430)
.+..++++++++.+.+.++ .++++|++|+|+++|+..++++.+. +++.|++..|+|+++........+
T Consensus 83 ~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~--------~Gd~Vlv~~P~y~~~~~~~~~~~g 154 (428)
T d1iaya_ 83 HGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLAD--------PGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCC--------TTCEEEEESSCCTTHHHHTTTTTC
T ss_pred cchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCC--------CCCEEEEccCCchHHHHHHHHhcC
Confidence 3445777888888887654 4578999999999999999998765 678899999999887443222222
Q ss_pred CccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHh---CCCCeEEEEEccccccCCCcccCChHHH
Q psy14484 149 IQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK---NHNKIAAIIIEPLVQCAGGMIMYDSIYL 225 (430)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~ep~v~~~~G~~~~~~~~l 225 (430)
...+.++.+.... +.. |.++++.+++. ...++.++++.. ++|++| ...+.+.+
T Consensus 155 ------------~~~v~v~~~~~~~--~~~--------d~~~~~~~~~~~~~~~~~~~~~~l~n-P~NPtG-~~~s~~~~ 210 (428)
T d1iaya_ 155 ------------VQLIPIHCESSNN--FKI--------TSKAVKEAYENAQKSNIKVKGLILTN-PSNPLG-TTLDKDTL 210 (428)
T ss_dssp ------------CEEEEECCCTTTT--TCC--------CHHHHHHHHHHHHHTTCCEEEEEEES-SCTTTC-CCCCHHHH
T ss_pred ------------CeEEEeecccccc--ccc--------ccccccchhhhhhccCCCceEEEEcc-CCCccc-cccccccc
Confidence 1122333221111 111 44555444322 245677777766 778888 67788889
Q ss_pred HHHHHHHHhcCCEEEEeccccCCCCcccccc-c-ccC------CCCCc----eeeeecccCC-CccccEEEEEc-HHHHH
Q psy14484 226 KLVREICNNYNIHLIADEIAVGCGRTGKFFA-C-EHA------EIWPD----FLCLSKGITG-GYLPLSLVMTT-DKIYN 291 (430)
Q Consensus 226 ~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~-~-~~~------~~~~d----~~~~sK~l~g-G~~~ig~~~~~-~~~~~ 291 (430)
++|.++|++||+++|+||+|..+.+.+..+. + +.. ...++ +.+|||.++. | +|+|++++. +.+.+
T Consensus 211 ~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G-lRiG~~~~~~~~l~~ 289 (428)
T d1iaya_ 211 KSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVN 289 (428)
T ss_dssp HHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHH
T ss_pred chhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCC-cccccccccccchhh
Confidence 9999999999999999999997755543211 1 100 11122 3378998864 5 899999985 55655
Q ss_pred hhhccCCcccccccCCCCCCHHHHHHHHHHHH---HHhh--cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeec-ceEEE
Q psy14484 292 SIYYKNNINIFLHSHSYSGNPLACCAALATLE---IFNK--DNILQRISQDMKKITKALTSLITHPKIINFRQK-GMIWA 365 (430)
Q Consensus 292 ~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~---~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~ 365 (430)
.+.. .......+.....++.+.+. .+++ .+..+.++++.+.+.+.|+.. ++....+. |.|++
T Consensus 290 ~~~~--------~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~----gi~~~~p~gg~f~w 357 (428)
T d1iaya_ 290 CARK--------MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV----GIKCLKNNAGLFCW 357 (428)
T ss_dssp HHHH--------HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCBCCCSSSSEEE
T ss_pred hhhh--------hhcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC----CCEEecCCcceEEE
Confidence 5543 11122233333333333321 1111 223334455555566666543 22233344 55666
Q ss_pred EEEeecCCc-cchhHHHHHHHHHHH-CCcEEeec-------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPE-QIETFSKKFFVAALK-NELLLRPI-------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 366 ~~~~~~~~~-~~~~~a~~~~~~l~~-~Gv~~~~~-------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+++. .... .......++++.|++ .||.+.|+ .+++|++++ ..++++|++++++|++++.
T Consensus 358 ~~l~-~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 358 MDLR-PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp EECG-GGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred EECc-cccccCCCCCHHHHHHHHHHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence 6665 3111 111113467888775 59999884 368999764 4678889999999999885
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.2e-22 Score=187.81 Aligned_cols=317 Identities=11% Similarity=0.045 Sum_probs=198.7
Q ss_pred EECCCCEEEecccccccccCCCCCHHHHHHHHHHHhhcccc-ccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 29 IDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 29 ~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
+...+++++++..| .++++ .++.+.+++.+.+...... +...+..++++.+++++... +..+++|++|+|+++++
T Consensus 14 ~~~~~~d~~~l~~~--enp~~-~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~~d~I~it~G~~~~l 89 (334)
T d2f8ja1 14 YETEKRDKTYLALN--ENPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLSKNNVSVGNGADEII 89 (334)
T ss_dssp CCCCCCCSEECSSC--CCSSC-CCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCCGGGEEEEEHHHHHH
T ss_pred ccccCCCceEEECC--CCCCC-CCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCCcceEEecCcchhHH
Confidence 34567888887666 67777 4789999998887653321 22222223444444444322 24678999999999988
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..+++ ..+.|++++|+|.++.......+ .+...++...+....
T Consensus 90 ~~l~~------------~~d~v~i~~P~y~~~~~~~~~~g-------------~~~v~v~~~~~~~~~------------ 132 (334)
T d2f8ja1 90 YVMML------------MFDRSVFFPPTYSCYRIFAKAVG-------------AKFLEVPLTKDLRIP------------ 132 (334)
T ss_dssp HHHHH------------HSSEEEECSSCCHHHHHHHHHHT-------------CCEEECCCCTTSCCC------------
T ss_pred HHHhh------------hccccccccccccccccchhccC-------------Ccccccccccccccc------------
Confidence 76543 23678999999988754433322 233344443221110
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
+ ....+++++++.. ++|++|...+ .+++.++ .++++++|+||++.++............+...-+.
T Consensus 133 ----~----~~~~~~~~l~l~n-P~NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~ 198 (334)
T d2f8ja1 133 ----E----VNVGEGDVVFIPN-PNNPTGHVFE----REEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIR 198 (334)
T ss_dssp ----C----CCCCTTEEEEEES-SCTTTCCCCC----HHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEE
T ss_pred ----c----cccccceEEEecc-cccccceeec----HHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEe
Confidence 0 0123445555554 5677785554 3444444 56789999999987553322211111111111234
Q ss_pred eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHH
Q psy14484 268 CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNK-DNILQRISQDMKKITKAL 345 (430)
Q Consensus 268 ~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~l~~~l 345 (430)
++||.++. | +|+|++++++++++.+.. ...++..+..++.++.+.++..+. +...+.+++..+++.+.|
T Consensus 199 S~SK~~~~~G-~R~G~~~~~~~~i~~l~~--------~~~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L 269 (334)
T d2f8ja1 199 TFSKAFSLAA-QRVGYVVASEKFIDAYNR--------VRLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSAL 269 (334)
T ss_dssp ESTTTSSCTT-TCEEEEEECHHHHHHHHH--------HSCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchhh-hhhhhcccchHHHHHHHH--------hhcccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHH
Confidence 78998774 6 899999999999988876 234455677777777666653221 233455666667777777
Q ss_pred HchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 346 TSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 346 ~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
+++ + +...++.|.|+++.+. . . .+.++++.|+++||.++++.+++|+++. +++|+++++++|++
T Consensus 270 ~~~---g-~~~~~~~g~f~~~~~~-~-----~-~~~~~~~~L~~~GI~vr~~~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 270 REM---G-YRITDSRGNFVFVFME-K-----E-EKERLLEHLRTKNVAVRSFREGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp HHH---T-CEECCCCSSEEEEECC-H-----H-HHHHHHHHHHHTTEECEEETTEEEEECC---CHHHHHHHHHHHHH
T ss_pred HHC---C-CeECCCCceEEEEECC-C-----C-CHHHHHHHHHHCCCEECCCCCeEEEEcC---CHHHHHHHHHHHhc
Confidence 665 2 2234567887766554 2 1 1468999999999999998999999865 78899999988875
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.4e-21 Score=182.42 Aligned_cols=333 Identities=11% Similarity=0.057 Sum_probs=219.6
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCC-------CHHHHHHHHHHHhhcCCC-CCeEEEcCCchH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQYK-LGHCFYGSDGAS 105 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~-~~~v~~~~sgte 105 (430)
..|+|..++ |..++.|.+++.+.+.+..... .... .+..++.++.+++++++. +++++|++++|+
T Consensus 23 ~iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~-~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~ 95 (405)
T d1jf9a_ 23 LAYLDSAAS------AQKPSQVIDAEAEFYRHGYAAV-HRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTE 95 (405)
T ss_dssp CEECCTTTC------CCCCHHHHHHHHHHHHHTCCCC-SSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHH
T ss_pred eEEEeCccc------cCCCHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHH
Confidence 358885443 4468899999999887632111 1111 145667888999999744 579999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHH
Q psy14484 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185 (430)
Q Consensus 106 A~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (430)
++..+++...... ..+++.|++.+..||........+. .....++..++.+.+...
T Consensus 96 ~~~~~~~~~~~~~----~~~g~~il~~~~e~~s~~~~~~~~a---------~~~g~~v~~~~~~~~g~~----------- 151 (405)
T d1jf9a_ 96 GINLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLC---------ARVGAELRVIPLNPDGTL----------- 151 (405)
T ss_dssp HHHHHHHHHHHHH----CCTTCEEEEETTCCGGGTHHHHHHH---------HHHTCEEEEECBCTTSCB-----------
T ss_pred HHHHHHhcccccc----cCCCCEEEEEeCcccchHHHHHHHH---------HHcCcEEEEECCCCCCcC-----------
Confidence 9998887644221 0156788888877776533222211 111234455655433332
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCc
Q psy14484 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265 (430)
Q Consensus 186 ~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d 265 (430)
|++.+++++ .+++++|.++. +++.+|.+.| +++|.++|+++|+++++|.+|+ .|.. .++.....+|
T Consensus 152 -~~~~~~~~i---~~~t~lv~~~~-v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~g~~----~id~~~~~~D 217 (405)
T d1jf9a_ 152 -QLETLPTLF---DEKTRLLAITH-VSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-VMHH----PVDVQALDCD 217 (405)
T ss_dssp -CGGGHHHHC---CTTEEEEEEES-BCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCS
T ss_pred -CHHHHHHhc---cCCcEEEEEec-CCCcccccCc----hHHhhhHHHHcCCeeeccccee-cccc----ccchhhcCCc
Confidence 667777776 47899999999 9999999999 9999999999999999999987 4322 1222234579
Q ss_pred eeeee--cccCCCccccEEEEEcHHHHHhhhccC-------------------CcccccccCCCCCCHHHHHHHHHHHHH
Q psy14484 266 FLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKN-------------------NINIFLHSHSYSGNPLACCAALATLEI 324 (430)
Q Consensus 266 ~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~-------------------~~~~~~~~~t~~~~~~~~~aa~~~l~~ 324 (430)
++++| |.+| + ..+|+++.++++.+.+.+.. .+..+ ..+| .+..+.++..+++++
T Consensus 218 ~~~~s~hK~~G-p-~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-e~GT--~~~~~~~~l~~al~~ 292 (405)
T d1jf9a_ 218 FYVFSGHKLYG-P-TGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF-EAGT--PNTGGIIGLGAALEY 292 (405)
T ss_dssp EEEEEGGGTTS-C-SSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGG-CCSS--CCHHHHHHHHHHHHH
T ss_pred eeecccccccc-C-CCceeeeechhhhcccCcccccccccCccccccccccccchhhh-cCCC--CcHHHHHHHHHHHHH
Confidence 88877 8754 3 45899999999876543210 00111 1222 356666667777776
Q ss_pred Hhh---cCHHHHHHHHHHHHHHHHHchhcCCCee--eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--
Q psy14484 325 FNK---DNILQRISQDMKKITKALTSLITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-- 397 (430)
Q Consensus 325 ~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-- 397 (430)
++. +...++...+.+++.+.++.+ +... ....++.++.+.++ ... +..+...|.++||.++.+
T Consensus 293 ~~~~g~~~i~~~~~~L~~~~~~~l~~~---~~~~~~~~~~r~~ivsf~~~-~~~------~~~~~~~L~~~gI~v~~G~~ 362 (405)
T d1jf9a_ 293 VSALGLNNIAEYEQNLMHYALSQLESV---PDLTLYGPQNRLGVIAFNLG-KHH------AYDVGSFLDNYGIAVRTGHH 362 (405)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTS---TTEEEESCTTCCSEEEEEET-TCC------HHHHHHHHHHTTEECEEECT
T ss_pred HHHhChHHHHHHHHHHHHHHHhhhhcC---CcccccCCcCcCcEEEEEcC-CCC------HHHHHHHHHHCCcEEEccch
Confidence 543 344555566666666665544 3322 22334556667665 321 356778888999988642
Q ss_pred -----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 -----------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 -----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+|+++++.+|++||+.++++|+++++
T Consensus 363 c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 363 CAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp TCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999988765
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.88 E-value=2e-20 Score=179.12 Aligned_cols=336 Identities=10% Similarity=0.073 Sum_probs=218.0
Q ss_pred EEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCC-------HHHHHHHHHHHhhcCCC-CCeEEEcCCchHH
Q psy14484 35 RYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH-------KPVIKLSEKLSSLTQYK-LGHCFYGSDGASA 106 (430)
Q Consensus 35 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA 106 (430)
-|+|-.+. |.-++.|.+++.+.+.+..... ....+ +..++.++.++++++++ ++.++++++++++
T Consensus 24 iYld~a~~------~~~p~~v~~~~~~~~~~~~~n~-~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~ 96 (408)
T d1t3ia_ 24 VYLDNAAT------SQKPRAVLEKLMHYYENDNANV-HRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEA 96 (408)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHHTCCCC---CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHH
T ss_pred EEeeCccc------cCCCHHHHHHHHHHHHhcCCCC-CchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHH
Confidence 47775443 4468899999999887642111 11111 45567888999999876 4779999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++....... .++++.|++.+..++......... .......+..++.+.....
T Consensus 97 ~n~~~~~~~~~~----~~~g~~il~s~~e~~s~~~~~~~~---------~~~~g~~v~~~~~~~~~~~------------ 151 (408)
T d1t3ia_ 97 INLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMV---------AAKTGAVLKFVQLDEQESF------------ 151 (408)
T ss_dssp HHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHH---------HHHHCCEEEEECBCTTSSB------------
T ss_pred HHHHHhhccccc----cCCCCEEEeecccchhhhhhhhhh---------hhccCceEeeeeccccccc------------
Confidence 988776533211 114567777666665442221111 1111233445554433322
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 266 (430)
+.+.+++.+ .+++++|.+.. +++++|..+| +++|.++|+++|+++|+|.+|+ +|.. .++.....+|+
T Consensus 152 ~~~~l~~~~---~~~t~lv~i~~-~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~----~id~~~~~~D~ 218 (408)
T d1t3ia_ 152 DLEHFKTLL---SEKTKLVTVVH-ISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHY----PLDVQLIDCDW 218 (408)
T ss_dssp CHHHHHHHC---CTTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTS----CCCHHHHTCSE
T ss_pred cHHHhhhcc---CCCceEEEEec-ccccccccCc----HHHHhhhhhccCceeeecccee-cccc----cccccccCCce
Confidence 677888777 46899999999 9999999999 9999999999999999999987 5432 12222345799
Q ss_pred eeee--cccCCCccccEEEEEcHHHHHhhhcc--CC----------------cccccccCCCCCCHHHHHHHHHHHHHHh
Q psy14484 267 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NN----------------INIFLHSHSYSGNPLACCAALATLEIFN 326 (430)
Q Consensus 267 ~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~~----------------~~~~~~~~t~~~~~~~~~aa~~~l~~~~ 326 (430)
+++| |.+ |+ ..+|+++.+++......+. +. +..+ ..+| .+..+++++.++++++.
T Consensus 219 ~~~s~hK~~-gp-~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~-e~Gt--~~~~~~~~l~~al~~~~ 293 (408)
T d1t3ia_ 219 LVASGHKMC-AP-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKF-EAGT--PAIAEAIALGAAVDYLT 293 (408)
T ss_dssp EEEEGGGTT-SC-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGG-CCSS--CCHHHHHHHHHHHHHHH
T ss_pred EEecccccc-CC-CCccccccchhhhhcCCceecCCcccccccccccccCCchhhh-cCCc--HHHHHHHHHHHHHHHHH
Confidence 9887 754 33 4689999999887654321 00 0011 1222 35555666666777655
Q ss_pred h---cCHHHHHHHHHHHHHHHHHchhcCCCee---eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---
Q psy14484 327 K---DNILQRISQDMKKITKALTSLITHPKII---NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--- 397 (430)
Q Consensus 327 ~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--- 397 (430)
+ +++.++..++.+++.+.++......... .....+.++.+.+. . . . +..+.+.|.++||.++.+
T Consensus 294 ~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~-~-~---~--~~~v~~~L~~~gI~v~~G~~c 366 (408)
T d1t3ia_ 294 DLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA-G-L---H--ASDVATMVDQDGIAIRSGHHC 366 (408)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET-T-B---C--HHHHHHHHHTTTEECBCSCTT
T ss_pred HcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeC-C-C---C--HHHHHHHHhhCCcEEecCccc
Confidence 3 4555667777777777776552211111 11223456666655 2 1 1 356888888999987642
Q ss_pred ----------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 398 ----------GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ----------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
++.+||+++.++|++||+.+++.|+++++.
T Consensus 367 ~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~ 406 (408)
T d1t3ia_ 367 TQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 406 (408)
T ss_dssp CHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=6.2e-21 Score=181.87 Aligned_cols=338 Identities=10% Similarity=0.042 Sum_probs=202.0
Q ss_pred EEecccccccccCCCCCHHHHHHHHHHHhhcccccc-CCCC-------CHHHHHHHHHHHhhcCCCCCeEEEcCCchHHH
Q psy14484 36 YLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML-SNLT-------HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAV 107 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~-------~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~ 107 (430)
|+|-.++ |..+|.|++++.+.+.+.....+ .... .+..+++++.+++++++++++|.|++|+|+++
T Consensus 5 YlD~aa~------~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l 78 (391)
T d1p3wa_ 5 YLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 78 (391)
T ss_dssp ECBTTTC------CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred EeeCccc------cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHH
Confidence 6775442 45689999999988764332211 1222 24456788899999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++..+...... +++.|++.+..|+........+ .....++..++.+..... |
T Consensus 79 ~~~~~~~~~~~~~----~gd~Vv~~~~~~~s~~~~~~~~----------~~~G~~v~~v~~~~~~~~------------d 132 (391)
T d1p3wa_ 79 NLAIKGAANFYQK----KGKHIITSKTEHKAVLDTCRQL----------EREGFEVTYLAPQRNGII------------D 132 (391)
T ss_dssp HHHHHHHHHHHGG----GCCEEEEETTSCHHHHHHHHHH----------HHTTCEEEEECCCTTSCC------------C
T ss_pred HHHHhhhhhhhcC----CCCEEEEeccccchHHHHHHHH----------HHcCCEEEEeCCCCCCeE------------c
Confidence 9988876542211 5678888887776543221111 111234455655443333 7
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCcee
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~ 267 (430)
+++++++++ +++++|+++. +++++|.+.| +++|.++|+++|+++++|++|+ +|.. .++.....+|++
T Consensus 133 ~~~~~~~i~---~~T~lv~is~-~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g~~----~~d~~~~~~D~~ 199 (391)
T d1p3wa_ 133 LKELEAAMR---DDTILVSIMH-VNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VGKL----PIDLSQLKVDLM 199 (391)
T ss_dssp HHHHHHHCC---TTEEEEECCS-BCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BTTB----CCCTTTSCCSEE
T ss_pred HHHHHHhCC---CCcEEEEEEC-CCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cCCc----cccchhcccccc
Confidence 889998885 6899999999 9999999988 9999999999999999999987 4322 122333457777
Q ss_pred eee--cccCCCccccEEEEEcHHHHHhhhccCCcccc-ccc-CCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHH
Q psy14484 268 CLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIF-LHS-HSYSGNPLACCAALATLEIFN--KDNILQRISQDMKKI 341 (430)
Q Consensus 268 ~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~-~~~-~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~~~l 341 (430)
+++ |.+|+ ..+|+++++++......+. ..... ... .....+.....+....++... .....++++++..++
T Consensus 200 ~~s~~k~~g~--~g~g~~~~~~~~~~~~~~~-~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 276 (391)
T d1p3wa_ 200 SFSGHKIYGP--KGIGALYVRRKPRVRIEAQ-MHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL 276 (391)
T ss_dssp EEESTTTTSC--SSCEEEEECBTTBCCCCCS-SCSSCTTTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCC--CceEEEEEecchhcccCCc-ccCCccccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHH
Confidence 665 56533 4589999988765544321 00000 000 111112222222222222221 123345566666666
Q ss_pred HHHHHchhcCCCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCc----EEee------------------cC
Q psy14484 342 TKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL----LLRP------------------IG 398 (430)
Q Consensus 342 ~~~l~~l~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv----~~~~------------------~~ 398 (430)
.++|..+....... .......++.+... . . . ...+...|.+.++ .+.+ .+
T Consensus 277 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~---~~~~~~~l~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~~~~ 349 (391)
T d1p3wa_ 277 WNGIKDIEEVYLNGDLEHGAPNILNVSFN-Y-V--E---GESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAH 349 (391)
T ss_dssp HHTTTTSTTEEECSCTTTSCTTEEEEEET-T-S--C---HHHHHHHTTTEECBCCCC------CCCHHHHHHTCCHHHHH
T ss_pred HHHHHhhcCeeecccccccCceEEEEEeC-C-C--C---hHHHHHHhCCCEEEccccccCCccchhHHHHHcCCCccccC
Confidence 66665542111000 11112233333333 2 1 1 2345554432222 1110 12
Q ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 399 NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 399 ~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
+.+||++++.+|++||+.+++.|+++++++
T Consensus 350 g~iRiS~~~~nt~edid~l~~~l~~~l~~l 379 (391)
T d1p3wa_ 350 SSIRFSLGRFTTEEEIDYTIELVRKSIGRL 379 (391)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999998764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.86 E-value=7.1e-20 Score=172.58 Aligned_cols=328 Identities=11% Similarity=0.087 Sum_probs=189.2
Q ss_pred CCCCHHHHHHHHHHHhhcccc--ccCCC-----CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 49 GHSNSYINKALKNQLNKLEHV--MLSNL-----THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 49 G~~~p~v~~a~~~~~~~~~~~--~~~~~-----~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
|.-.|++++|+.+..+.+... ..... ..+.++.+++.+++.+ +.+++++|+||++|+..++.++..
T Consensus 12 ~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~--g~e~~~~t~g~t~a~~~~~~al~~----- 84 (364)
T d2e7ja1 12 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL--GCDVARVTNGAREAKFAVMHSLAK----- 84 (364)
T ss_dssp CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT--TSSEEEEESSHHHHHHHHHHHHCC-----
T ss_pred CcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHh--CcCEEEEECcHHHHHHHHHHHHhC-----
Confidence 445788888887643321110 00000 1135677889999999 568999999999999999988764
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCC--
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-- 199 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-- 199 (430)
+++.||+.+++|+..... .... ...+.+++..+..... .|++++++.+++..
T Consensus 85 ---~gd~Vi~~~~~h~s~~~~-~~~~------------g~~v~~v~~~~~~~~~----------i~~~~l~~~i~~~~k~ 138 (364)
T d2e7ja1 85 ---KDAWVVMDENCHYSSYVA-AERA------------GLNIALVPKTDYPDYA----------ITPENFAQTIEETKKR 138 (364)
T ss_dssp ---TTCEEEEETTCCHHHHHH-HHHT------------TCEEEEECCCCTTTCC----------CCHHHHHHHHHHHTTT
T ss_pred ---CCcEEEeecccccccchH-HHhc------------cceEEEeeeccccccc----------cCHHHHHhhhhhhccc
Confidence 667888877666433222 2111 2233455543221110 17899999997653
Q ss_pred CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCc
Q psy14484 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGY 277 (430)
Q Consensus 200 ~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~ 277 (430)
..+++|+++. +++++|.+.| +++|.++|++||+++|+||+|+ ++..+ .+......|++++| |.+++.
T Consensus 139 ~~~~lv~i~~-~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~----~~~~~~g~D~~~~S~~K~~~~~- 207 (364)
T d2e7ja1 139 GEVVLALITY-PDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMP----VSLKEIGADFIVGSGHKSMAAS- 207 (364)
T ss_dssp SCEEEEEEES-SCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBC----CCHHHHTCSEEEEEHHHHSSCC-
T ss_pred CCceEEEeec-CCCCCceeec----chhheeccccccchhhccccch-hhhhh----hcccccccceeeeccccccCCC-
Confidence 4578888888 9999998888 9999999999999999999996 43322 11112236777766 998875
Q ss_pred cccEEEEEcHHHHHhhhccCCcc----cccccCCCCCCHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHchhcC
Q psy14484 278 LPLSLVMTTDKIYNSIYYKNNIN----IFLHSHSYSGNPLACCAALATLEIFNK--DNILQRISQDMKKITKALTSLITH 351 (430)
Q Consensus 278 ~~ig~~~~~~~~~~~~~~~~~~~----~~~~~~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~ 351 (430)
.++|++++++++.+.+....... ....+.+..+ ....+..++++...+ +.+.+. .++.+++.+.|+++ ..
T Consensus 208 g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~-g~ 283 (364)
T d2e7ja1 208 GPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARG--ATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEKL-GI 283 (364)
T ss_dssp SSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCS--HHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHHT-TC
T ss_pred CCEEEEEECHHHHHHHHhhccccCcccccccccccch--hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc-CC
Confidence 36899999988776654311000 0011112222 222233344443321 233333 34566677777654 11
Q ss_pred CCee-eEeecceEEEEEEeecCCc--c-chhHHHHHHHHHHHCCcEEeecC--CEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 352 PKII-NFRQKGMIWAFDVIIEDPE--Q-IETFSKKFFVAALKNELLLRPIG--NTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 352 ~~~~-~~~~~g~~~~~~~~~~~~~--~-~~~~a~~~~~~l~~~Gv~~~~~~--~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
..+. ..... ....+... .... . .......+...+..+|+.....+ ...|++ .+..|+|+|++++++|++++
T Consensus 284 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~-~~~~t~edid~~~~~l~ei~ 360 (364)
T d2e7ja1 284 KQLGDNPHNH-DLMFFHAE-VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLS-TYGLSDEEVDYVLNAFKEII 360 (364)
T ss_dssp EEESSSSCCS-SEEEEECH-HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEE-CTTCCHHHHHHHHHHHHHHH
T ss_pred eecCCCCCCc-ceEEEecc-chHHHHHHhhccchHHHHHHHhcCCceecCCCcceEEEe-ccCCCHHHHHHHHHHHHHHH
Confidence 1111 11111 11222221 1000 0 00001235556677777654332 566665 56789999999999999998
Q ss_pred HH
Q psy14484 426 NE 427 (430)
Q Consensus 426 ~~ 427 (430)
++
T Consensus 361 ~~ 362 (364)
T d2e7ja1 361 EK 362 (364)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=9.9e-21 Score=184.60 Aligned_cols=365 Identities=10% Similarity=0.028 Sum_probs=210.2
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
+..++|+.+.++..... +++...+..+. ..+..++...+|++.+++++ +.+.+++++||++|+..|++
T Consensus 40 ~~~~idl~sd~~t~~~~-------~~~~a~~~~gd---~~Y~~~~~~~~le~~~a~l~--G~~~~~~~~sGt~A~~~a~~ 107 (467)
T d2v1pa1 40 EDVFIDLLTDSGTGAVT-------QSMQAAMMRGD---EAFSGSRSYYALAESVKNIF--GYQYTIPTHQGRGAEQIYIP 107 (467)
T ss_dssp GGCSEECSCCTTCSCCC-------HHHHHHTTSCC---CCSSSCHHHHHHHHHHHHHT--CCSEEEEECSSTTTHHHHHH
T ss_pred cceeeeccccccchhhH-------HHHHhhccccc---hhhcCCchHHHHHHHHHHHH--CCCEEEECCCCHHHHHHHHH
Confidence 44578887776543221 11122222222 12345677889999999999 67899999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 192 (430)
+++.+.......++...+.....||+.+......++... ..++.+...... .........|+++|+
T Consensus 108 ~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~------------~~~~~~~~~~~~--~~~~~~~~~d~~~l~ 173 (467)
T d2v1pa1 108 VLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTV------------RNVYIKEAFDTG--VRYDFKGNFDLEGLE 173 (467)
T ss_dssp HHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEE------------EECBCTTTTCTT--SCCTTTTCBCHHHHH
T ss_pred HHhhccceEecCCCCcEEEEecccccccHHHHHHcCCee------------eecccccccccc--cccccccCCCHHHHH
Confidence 998875544434555667778888887766666555321 111111100000 000000013889999
Q ss_pred HHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCC---CCcccccccccC--------
Q psy14484 193 ILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC---GRTGKFFACEHA-------- 260 (430)
Q Consensus 193 ~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~---g~~g~~~~~~~~-------- 260 (430)
+.++++ +..++++++|+ +++++|..+++.+++++|+++|++||++||+|+++..- +..+........
T Consensus 174 ~~i~~~~~~~~~~i~~e~-~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (467)
T d2v1pa1 174 RGIEEVGPNNVPYIVATI-TSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRE 252 (467)
T ss_dssp HHHHHHCGGGCCCEEEES-SBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHH
T ss_pred HHHhhcCccccceeeecc-eeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchh
Confidence 999876 35688999999 99998889999999999999999999999999998610 011111111111
Q ss_pred -CCCCceeeeecccCCCccccEEEEEcHHHH-Hhhhcc-CCcccccccCCCCCCHHHHH-HHHHHHHHHhhcCHHHHHHH
Q psy14484 261 -EIWPDFLCLSKGITGGYLPLSLVMTTDKIY-NSIYYK-NNINIFLHSHSYSGNPLACC-AALATLEIFNKDNILQRISQ 336 (430)
Q Consensus 261 -~~~~d~~~~sK~l~gG~~~ig~~~~~~~~~-~~~~~~-~~~~~~~~~~t~~~~~~~~~-aa~~~l~~~~~~~~~~~~~~ 336 (430)
.-..|++++|+..+++....|+++.+++.. ...... .......+..++.+...+.. +....+.....+++.++..+
T Consensus 253 ~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (467)
T d2v1pa1 253 TYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIA 332 (467)
T ss_dssp HGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHHHHHHHHHHHhHHhhhHHHHHHHHH
Confidence 123688888865544422334555554432 221110 00001112334444444333 33333444444567778888
Q ss_pred HHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhH-HH-HHHHHHHHCCcEEee------------------
Q psy14484 337 DMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF-SK-KFFVAALKNELLLRP------------------ 396 (430)
Q Consensus 337 ~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-a~-~~~~~l~~~Gv~~~~------------------ 396 (430)
+.+++.++|.+.. .. +......+.++..... .......++ .. ...+.+.+.||....
T Consensus 333 ~~~~l~~~L~~~~-~~-v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~ 409 (467)
T d2v1pa1 333 QVQYLVDGLEEIG-VV-CQQAGGHAAFVDAGKL-LPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPC 409 (467)
T ss_dssp HHHHHHHHHHHTT-CC-EEEECSSCEEEEHHHH-STTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCC
T ss_pred HHHHHHHHHHhcC-Cc-ccCCCccceeecchhh-cCCcchhhhhhHHHHHHHHHHcCCeeecccccccccccccCCccCC
Confidence 8999999998751 11 2222222222111110 000001111 12 233444566764421
Q ss_pred cCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHH
Q psy14484 397 IGNTVYLMPP-YILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 397 ~~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~ 427 (430)
..+.+||+++ ..+|+||||.++++|++++++
T Consensus 410 ~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 410 PAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp SCCEEEECCCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcceEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367999865 577999999999999999864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.9e-20 Score=176.03 Aligned_cols=323 Identities=14% Similarity=0.109 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
+|+|++|+... ...++.....+..++.++.|+++++.+-+ .|+|+.|||+|++.++..... ++++++
T Consensus 31 ~~~Vl~am~~~----~i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l~~--------~~~~~~ 98 (388)
T d1h0ca_ 31 PPRIMAAGGLQ----MIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNVLE--------PGDSFL 98 (388)
T ss_dssp CHHHHHHHTCC----CCCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCC--------SSCCEE
T ss_pred CHHHHHHhCcC----CCCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHhhc--------cCCcee
Confidence 67777765421 11112222346678889999999975433 689999999999999998764 667777
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
+...++++........ ........+..+..... |.+.+++.+.. .+++++.+..
T Consensus 99 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~v~~~~- 152 (388)
T d1h0ca_ 99 VGANGIWGQRAVDIGE-----------RIGARVHPMTKDPGGHY------------TLQEVEEGLAQ--HKPVLLFLTH- 152 (388)
T ss_dssp ECBSSHHHHHHHHHHH-----------HHC--CBCCBCCTTCCC------------CHHHHHHHHHH--HCCSEEEEES-
T ss_pred eecccceeeeeccccc-----------cccccccccccCCcccc------------chHHHHHHhcc--CCcceEEEee-
Confidence 7665555442221110 01111122222222111 55666666654 3566777788
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHH
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~ 288 (430)
+++++|.+.| +++|.++|++||+++++|.+|+ +|.. .++......|++++| |.+++. ..+|.++.++.
T Consensus 153 ~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g~~----~~d~~~~~~D~~~~s~~K~~~gp-~g~~~~~~~~~ 222 (388)
T d1h0ca_ 153 GESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LGGT----PLYMDRQGIDILYSGSQKALNAP-PGTSLISFSDK 222 (388)
T ss_dssp EETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCC-TTCEEEEECHH
T ss_pred eeeccccccC----HHHHHHHhhcccccceeccccc-cccc----cccccccccceecccccccccCC-CceEEEeecHH
Confidence 8999999999 9999999999999999999987 4322 223334456888777 777664 35788888888
Q ss_pred HHHhhhccC-Cccc---------------cc-ccCCCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHch
Q psy14484 289 IYNSIYYKN-NINI---------------FL-HSHSYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL 348 (430)
Q Consensus 289 ~~~~~~~~~-~~~~---------------~~-~~~t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l 348 (430)
..+.+.... .... .. .....+.+..+..+..++++.+.+ +...++.+++.+++++.++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~ 302 (388)
T d1h0ca_ 223 AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL 302 (388)
T ss_dssp HHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc
Confidence 776554310 0000 00 011123345556666677776544 344566677788888888766
Q ss_pred hcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEe-CCCCCCHHHHHHHHHH
Q psy14484 349 ITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLM-PPYILNKNEIQHMTSA 420 (430)
Q Consensus 349 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~-~~~~~t~e~i~~~~~~ 420 (430)
........ ......++.+.++ ++.. +.++...|.++ ||.++.+ ++.+||+ +++.+|++||++++++
T Consensus 303 g~~~~~~~~~~rs~~i~~~~~p-~~~~-----~~~~~~~L~~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~a 376 (388)
T d1h0ca_ 303 GLQLFVKDPALRLPTVTTVAVP-AGYD-----WRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEA 376 (388)
T ss_dssp TCCBSSCSGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred CcccccCCHHHcCCeEEEEECC-CCCC-----HHHHHHHHHhcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 22222211 1122345566665 3221 35688887665 9988764 4689998 6788999999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|+++|+++
T Consensus 377 L~~~L~~l 384 (388)
T d1h0ca_ 377 LRAALQHC 384 (388)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.85 E-value=4.3e-19 Score=169.68 Aligned_cols=341 Identities=10% Similarity=0.054 Sum_probs=209.7
Q ss_pred CCCEEEecccccccccCCCCCHHHHHHHHHHHhhccccc-----cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 32 SGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM-----LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 32 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
++..|||..+ .|..+..|.+++.+.+.+..... ......+..+++++.+++++++++++++|++++|++
T Consensus 26 ~~~iYLd~as------~g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~T~~ 99 (404)
T d1qz9a_ 26 EGVIYLDGNS------LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 99 (404)
T ss_dssp TTCEECCTTT------SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCCEEcCCcc------cccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCchHH
Confidence 5677888543 45567889999999876532111 011223567789999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++..........+ ..+.+++.+..++.......... .+ .... .......+
T Consensus 100 ~~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~~----~~--~~~~--~~~~~~~~----------------- 152 (404)
T d1qz9a_ 100 LFKVLSAALRVQATRS--PERRVIVTETSNFPTDLYIAEGL----AD--MLQQ--GYTLRLVD----------------- 152 (404)
T ss_dssp HHHHHHHHHHHHHHHS--TTCCEEEEETTSCHHHHHHHHHH----HH--HHCS--SCEEEEES-----------------
T ss_pred HHHHhhhhhhhhcccC--CCcEEEEeccccchHHHHHHhhh----he--eeee--ceeccccc-----------------
Confidence 9887764433221111 44556666655553321111100 00 0000 01111111
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCce
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~ 266 (430)
+++.++++++ +++++|.+.. +++.+|.+.| +++|.++|+++|+++++|-+|+ +|... ...+ ...+|+
T Consensus 153 ~~~~~~~~i~---~~T~lV~i~~-v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g~~~--~~~~--~~~~d~ 219 (404)
T d1qz9a_ 153 SPEELPQAID---QDTAVVMLTH-VNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVP--VDLH--QAGADY 219 (404)
T ss_dssp SGGGHHHHCS---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSC--CCHH--HHTCSE
T ss_pred cchhHHHhcC---CCceEEEEec-ccccccceec----HHHHhccccccccceeEEeecc-ccccc--cccc--cccceE
Confidence 4456666774 7899999999 9999999999 9999999999999999999997 54321 2222 334677
Q ss_pred eeee--cccCCCccccEEEEEcHHHHHhhhccCC-----ccc------------ccccCCCCCCHHHHHHHHHHHHHHhh
Q psy14484 267 LCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNN-----INI------------FLHSHSYSGNPLACCAALATLEIFNK 327 (430)
Q Consensus 267 ~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~-----~~~------------~~~~~t~~~~~~~~~aa~~~l~~~~~ 327 (430)
++++ |.+.+|....|+++.++.+.+.+..... ... .........+..+.....+.++.+..
T Consensus 220 ~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (404)
T d1qz9a_ 220 AIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQ 299 (404)
T ss_dssp EEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTT
T ss_pred EEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHH
Confidence 7665 7765542236778888776554432100 000 00011122344555555555655543
Q ss_pred ---cCHHHHHHHHHHHHHHHHHchhcCCCee-----eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-C
Q psy14484 328 ---DNILQRISQDMKKITKALTSLITHPKII-----NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-G 398 (430)
Q Consensus 328 ---~~~~~~~~~~~~~l~~~l~~l~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-~ 398 (430)
+...++...+...+.+.+..+...+.+. ....++.++.+... + +..+.+.|.++||++... +
T Consensus 300 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~-~--------~~~v~~~L~~~gi~~~~r~~ 370 (404)
T d1qz9a_ 300 TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP-E--------GYAVIQALIDRGVIGDYREP 370 (404)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT-T--------HHHHHHHHHTTTEECEEETT
T ss_pred hhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecC-C--------HHHHHHHHHHCCCEEeecCC
Confidence 2334444555555555544442223221 12234556666544 2 367899999999987654 5
Q ss_pred CEEEEeC-CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 399 NTVYLMP-PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 399 ~~lR~~~-~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+.+||+| ++++|++||++++++|++++++
T Consensus 371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 371 RIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999 4789999999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=5.1e-20 Score=170.01 Aligned_cols=323 Identities=9% Similarity=0.004 Sum_probs=174.3
Q ss_pred ccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCC
Q psy14484 46 NLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125 (430)
Q Consensus 46 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~ 125 (430)
++.| .||+|++|++++..... ..++.++..++++++++++++...++|+||+||||||..|+..++. +
T Consensus 8 ~~~g-~~P~v~eAl~~~~~~~~---~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~--------~ 75 (340)
T d1svva_ 8 YSVG-MHPKILDLMARDNMTQH---AGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR--------P 75 (340)
T ss_dssp CSSC-CCHHHHHHHHHHTTCCC---CSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCC--------T
T ss_pred CCCC-CCHHHHHHHHHHhhcCC---CCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhh--------h
Confidence 3445 69999999998754321 2244677888999999999998888999999999999999997765 4
Q ss_pred CcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeE
Q psy14484 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN--HNKIA 203 (430)
Q Consensus 126 ~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~ 203 (430)
++.++.....++........... ........ +...... +.+.++...... .....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 132 (340)
T d1svva_ 76 WEAVIATQLGHISTHETGAIEAT-----------GHKVVTAP-CPDGKLR-----------VADIESALHENRSEHMVIP 132 (340)
T ss_dssp TEEEEEETTSHHHHSSTTHHHHT-----------TCCEEEEC-CTTSCCC-----------HHHHHHHHHHSCSTTSCEE
T ss_pred ccccccccccceeeeeccccccc-----------ceeeeecc-ccccccc-----------chhHHHHhhhhhcccCCcc
Confidence 55666555544432111111111 01111111 1111000 111111111111 12334
Q ss_pred EEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCc--ccccccccCCCCCceeeeecccCCCccccE
Q psy14484 204 AIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT--GKFFACEHAEIWPDFLCLSKGITGGYLPLS 281 (430)
Q Consensus 204 ~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~--g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig 281 (430)
.+++.. ..+++| ...+.+.+..+.+.|+++|+++++|+++.+.... +............++..+++..+.+....+
T Consensus 133 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (340)
T d1svva_ 133 KLVYIS-NTTEVG-TQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEA 210 (340)
T ss_dssp EEEEEE-SSCTTS-CCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEE
T ss_pred eeeeec-cccccc-ccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccccc
Confidence 444444 445555 3445566888999999999999999998733111 111111111112345566665554422233
Q ss_pred EEEEcHHHHHhhhccCCcccccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecc
Q psy14484 282 LVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKG 361 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g 361 (430)
.............. .......+......+.+++.+.++........++...+..++.+.++.+ .... ..+..+
T Consensus 211 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~--~~p~~~ 283 (340)
T d1svva_ 211 LIILNDALKPNARH----LIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-GIRL--AWPSAS 283 (340)
T ss_dssp EEECSGGGCTTHHH----HHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCB--SSCCSS
T ss_pred ccccchhhhhhhhh----hcccccCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-CCee--ecCCCc
Confidence 33333333222221 1111223333333333333333322112334455666667777777665 2222 223455
Q ss_pred eEEEEEEeecCCccchhHHHHHHHHHHHCC----cEEeecC-CEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNE----LLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G----v~~~~~~-~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
.++.+.+. . .....|.+++ +...+.+ +.+||++++.+|+||||+++++|++
T Consensus 284 ~~v~~~~~-~----------~~~~~l~~~~~~~~~~~~~~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 284 NQLFPILE-N----------TMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp SEECBEEE-H----------HHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEeCC-H----------HHHHHHHHhhhhhcccccCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 66666555 2 2444455553 3333333 6899999999999999999999986
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.7e-18 Score=163.93 Aligned_cols=334 Identities=12% Similarity=0.040 Sum_probs=200.0
Q ss_pred CEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCC-------CHHHHHHHHHHHhhcCCCCCeEEEcCCchHH
Q psy14484 34 KRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-------HKPVIKLSEKLSSLTQYKLGHCFYGSDGASA 106 (430)
Q Consensus 34 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA 106 (430)
|-|||..++ +..++.|.+++.+.+.+.. .++... .+..++.++.+++++++++++|+|++|+|++
T Consensus 2 ~iyld~a~~------~~~p~~v~ea~~~~~~~~~--~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~ 73 (376)
T d1eg5a_ 2 RVYFDNNAT------TRVDDRVLEEMIVFYREKY--GNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATES 73 (376)
T ss_dssp CEECBTTTC------CCCCHHHHHHHHHHHHTCC--CCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHH
T ss_pred EEEEECccc------ccCCHHHHHHHHHHHHHcC--CCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHH
Confidence 457785443 3467899999999887532 111211 2334566788999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..++....... ..++.+++....+|+........ ......+++.+|.+.+.+.
T Consensus 74 l~~~~~~~~~~~-----~~~g~~v~~~~~~~~~~~~~~~~---------~~~~g~~v~~vp~~~~~~i------------ 127 (376)
T d1eg5a_ 74 INWILKTVAETF-----EKRKRTIITTPIEHKAVLETMKY---------LSMKGFKVKYVPVDSRGVV------------ 127 (376)
T ss_dssp HHHHHHHHHHHT-----TTTCCEEEECTTSCHHHHHHHHH---------HHHTTCEEEECCBCTTSCB------------
T ss_pred HHhhhhcccccc-----cccCcccccccccchhhHHHHHH---------HHhcCCEEEEEcCCCCCeE------------
Confidence 999887654321 13334444445555442222111 1112334456665543333
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc--CCEEEEeccccCCCCcccccccccCCCCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWP 264 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~ 264 (430)
|+++++++++ +++++|++.. +++.+|...+ ++++.++|+.+ ++++++|.+|. +|.. ..+.....+
T Consensus 128 d~~~l~~~i~---~~t~lv~is~-v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g~~----~~d~~~~~~ 194 (376)
T d1eg5a_ 128 KLEELEKLVD---EDTFLVSIMA-ANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI----PFSLEKLEV 194 (376)
T ss_dssp CHHHHHHHCC---TTEEEEEEES-BCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS----CCCCTTTCC
T ss_pred CHHHHHHhcC---CCceEEEEEC-Cccccceeee----ehhhhhhhhhcccCceeEEEeeec-cccc----cccccccCc
Confidence 7899999885 6899999999 9999999888 99999988655 89999999986 5432 222334457
Q ss_pred ceeeee--cccCCCccccEEEEEcHHHHHhhhcc--CCcccccccCCCCCCHHHHHHHHHHHHHHh--hcCHHHHHHHHH
Q psy14484 265 DFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK--NNINIFLHSHSYSGNPLACCAALATLEIFN--KDNILQRISQDM 338 (430)
Q Consensus 265 d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~--~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~--~~~~~~~~~~~~ 338 (430)
|++++| |.+++ ...|+++.+++.. +.+. +.. ..........+......+.+...... ............
T Consensus 195 D~~~~s~~K~~gp--~G~~~l~~~~~~~--~~p~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (376)
T d1eg5a_ 195 DYASFSAHKFHGP--KGVGITYIRKGVP--IRPLIHGGG-QERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLR 269 (376)
T ss_dssp SEEEEEGGGGTSC--TTCEEEEECTTSC--CCCSBCSSC-TTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cceecccceeecC--CCceeEEeccCcc--cCCcccCCC-CcccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhh
Confidence 877655 87643 4578888876532 2210 000 00011111223344333333333222 123334455556
Q ss_pred HHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec---------------------
Q psy14484 339 KKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------- 397 (430)
Q Consensus 339 ~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------------------- 397 (430)
.++.+.|......-.............+.+. . . . +..+...|.++||.++.+
T Consensus 270 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~---~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~ 342 (376)
T d1eg5a_ 270 SKLVSGLMNLGAHIITPLEISLPNTLSVSFP-N-I--R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDR 342 (376)
T ss_dssp HHHHHHHHTTTCEECSCTTSBCTTEEEEECT-T-C--C---HHHHHHHHHHTTEECBC------------CHHHHTTCCH
T ss_pred hhhccccccccccccccccccccceeeeccC-C-C--C---HHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCc
Confidence 6666666543110000011111222333333 2 1 1 356777888889877532
Q ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 398 ---GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 ---~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
++++||++++++|++|||.+++.|+++++
T Consensus 343 ~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 343 RIAQGAIRISLCKYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp HHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence 13699999999999999999999999987
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.83 E-value=8.1e-20 Score=174.54 Aligned_cols=341 Identities=10% Similarity=-0.043 Sum_probs=196.1
Q ss_pred EEecccccccccCCCC--CHHHHHHHHHHHhhcc-c-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCC--ch---
Q psy14484 36 YLDAISSWWVNLFGHS--NSYINKALKNQLNKLE-H-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSD--GA--- 104 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~s--gt--- 104 (430)
.||+..|.+-..-|.. .|.|++|..+.+.+.. + +....+..++++++++.+.+..+ ...+.+..+.+ ++
T Consensus 30 ~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~ 109 (401)
T d7aata_ 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred cEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence 4776666433344432 4788888887776542 2 22333445677777777765442 13455655443 22
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHH
Q psy14484 105 SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIA 184 (430)
Q Consensus 105 eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (430)
+++..+++.... +++.|++++|+|+++.......+. ..+.++..+....
T Consensus 110 ~~~~~~~~~l~~--------pGd~Vlv~~P~y~~y~~~~~~~g~-------------~~~~~~~~~~~~~---------- 158 (401)
T d7aata_ 110 RVGANFLQRFFK--------FSRDVYLPKPSWGNHTPIFRDAGL-------------QLQAYRYYDPKTC---------- 158 (401)
T ss_dssp HHHHHHHHHHCT--------TCCEEEEEESCCTTHHHHHHHTTC-------------EEEEEECEETTTT----------
T ss_pred HHHHHhhHhhcC--------CCceEEEecCCCcchhhHHHHcCC-------------eEEEEeccccccc----------
Confidence 234444444443 678999999999998655554333 1223332111110
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c---cccC
Q psy14484 185 RCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A---CEHA 260 (430)
Q Consensus 185 ~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~---~~~~ 260 (430)
..+++.+++.+....++++++++.. .+|++| ...+.+.+++|.++|++|++++|.||+|.++.+.+... . ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~iii~~-p~NPTG-~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~ 236 (401)
T d7aata_ 159 SLDFTGAMEDISKIPEKSIILLHAC-AHNPTG-VDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFI 236 (401)
T ss_dssp EECHHHHHHHHTTSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred cccHHHHHHHHhcCCCceEEEEecC-CCCCcc-ccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhh
Confidence 0167777777766556788888888 899999 77888999999999999999999999999886654311 1 1111
Q ss_pred CCCC---ceeeeecccCC-CccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHH--H----h--h
Q psy14484 261 EIWP---DFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEI--F----N--K 327 (430)
Q Consensus 261 ~~~~---d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~--~----~--~ 327 (430)
...+ .+.++||.++- | +|+|+++++.++.+....-. .............+.+.+.++...+.. + . .
T Consensus 237 ~~~~~~~~~~s~sk~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 315 (401)
T d7aata_ 237 EQGIDVVLSQSYAKNMGLYG-ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEV 315 (401)
T ss_dssp HTTCCCEEEEECTTTSCCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhcccceeEeccccceeec-cccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1122 23478897764 5 89999999877655432200 000000112223344444444443321 1 0 0
Q ss_pred cCHHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEE-EEeecCCccchhHHHHHHHHH-HHCCcEEeecCCEEEEeC
Q psy14484 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF-DVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNTVYLMP 405 (430)
Q Consensus 328 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~~~~lR~~~ 405 (430)
....++++++.+.+.+.|+++.....+..+..+|.|+.+ .+. .+++++| .+.||.+.|+ +||++
T Consensus 316 ~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~gV~~~pg---~Ris~ 381 (401)
T d7aata_ 316 KGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK-----------PEQVERLTKEFSIYMTKD---GRISV 381 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTT---CEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC-----------HHHHHHHHHhCCEEECCC---cEEEe
Confidence 223344555566666666654111112223344444433 222 2355665 4569998876 38875
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l 425 (430)
+ ..++++|+.+.++|.+++
T Consensus 382 a-~~~~~~i~~la~ai~~v~ 400 (401)
T d7aata_ 382 A-GVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp G-GCCTTTHHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHHHHHh
Confidence 5 467778998888888765
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.83 E-value=5e-19 Score=169.61 Aligned_cols=354 Identities=9% Similarity=-0.032 Sum_probs=202.0
Q ss_pred EEecccccccccCCCC--CHHHHHHHHHHHhhc--cc-cccCCCCCHHHHHHHHHHHhhcC--CCCC--eEEEcCCchHH
Q psy14484 36 YLDAISSWWVNLFGHS--NSYINKALKNQLNKL--EH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLG--HCFYGSDGASA 106 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~--~v~~~~sgteA 106 (430)
.||+.-|.....-|.. .|.|++|.......- .+ +....+..++++++++++.+..+ ...+ .+..+++++.+
T Consensus 32 ~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1ajsa_ 32 KVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 111 (412)
T ss_dssp CEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhH
Confidence 4677666433344432 367777766544332 12 12223334556666666654332 1233 45667888888
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
+..+..++........+ +++.|++++|+|..+.......+.... ...+.++.... ..
T Consensus 112 ~~~~~~~l~~~~~~~~~-pGd~Vlv~~P~y~~y~~~~~~~G~~~v------------~~~~~~~~~~~----------~~ 168 (412)
T d1ajsa_ 112 LRIGAEFLARWYNGTNN-KDTPVYVSSPTWENHNGVFTTAGFKDI------------RSYRYWDTEKR----------GL 168 (412)
T ss_dssp HHHHHHHHHHHSSSSSC-CCSCEEEEESCCTHHHHHHHHTTCSCE------------EEEECEETTTT----------EE
T ss_pred HHHHHHHHHHHhhhcCC-CCCEEEEeCCcchhhHHHHHHcCCeEE------------Eeecccccccc----------cc
Confidence 88887766543222112 678899999999887655444333211 11112111110 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc---ccc-ccCCC
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF---FAC-EHAEI 262 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~---~~~-~~~~~ 262 (430)
|++.+++.+....+++.++++.+ .+|++| ..++.+.+++|.++|++||+++|.||+|.++.+.+.. +.. .....
T Consensus 169 d~~~~~~~~~~~~~~~~~il~~~-P~NPTG-~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 246 (412)
T d1ajsa_ 169 DLQGFLSDLENAPEFSIFVLHAC-AHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE 246 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT
T ss_pred cHHHHHHHHHhccCCcEEEEecC-CCCCcC-CCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhh
Confidence 67777777776667788888888 899999 7789999999999999999999999999988665431 111 11111
Q ss_pred -C--CceeeeecccCCCccccEEEEEcHHHHHhhhcc-CCcccccccCCCCCCHHHHHHHHHHHHH------Hh--hcCH
Q psy14484 263 -W--PDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYK-NNINIFLHSHSYSGNPLACCAALATLEI------FN--KDNI 330 (430)
Q Consensus 263 -~--~d~~~~sK~l~gG~~~ig~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~aa~~~l~~------~~--~~~~ 330 (430)
. .-+.++||.++..++|+|++++.....+.+..- ........+.....+..++.++...+.. +. -...
T Consensus 247 ~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (412)
T d1ajsa_ 247 GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTM 326 (412)
T ss_dssp TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 123367898776338999999886544332210 0000011122233444555544444321 10 0223
Q ss_pred HHHHHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeecCCEEEEeCCCCC
Q psy14484 331 LQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNTVYLMPPYIL 409 (430)
Q Consensus 331 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~~~~lR~~~~~~~ 409 (430)
.++++++.+.+.+.|+++.....+..+..++.|+.+ +. . + .+++++| .++||++.|++ ||+++ ..
T Consensus 327 ~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~-~~-l----s----~~~v~~L~~e~gV~~vpg~---Ri~~a-g~ 392 (412)
T d1ajsa_ 327 ADRILSMRSELRARLEALKTPGTWNHITDQIGMFSF-TG-L----N----PKQVEYLINQKHIYLLPSG---RINMC-GL 392 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEE-CC-C----C----HHHHHHHHHTTCEECCTTS---EEEGG-GC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEe-cC-C----C----HHHHHHHHHhCCEEEeCCC---eEEec-cC
Confidence 445566666666666655211112223333334332 22 1 1 2344555 56799888875 88755 35
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy14484 410 NKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~~ 428 (430)
++++|+.+.++|+++++++
T Consensus 393 ~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 7788999999999999875
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=3.7e-19 Score=167.43 Aligned_cols=302 Identities=16% Similarity=0.166 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCe--EEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 76 HKPVIKLSEKLSSLTQYKLGH--CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 76 ~~~~~~l~~~l~~~~~~~~~~--v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
.+..++.++.+++++++..++ ++++.|||++++.++..+.. +++++++....+++.......
T Consensus 32 ~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~-------- 95 (361)
T d1m32a_ 32 IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALG--------PQDKVLIVSNGAYGARMVEMA-------- 95 (361)
T ss_dssp TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCC--------TTCCEEEEESSHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhh--------hccccceeeehhhhhhHHHHh--------
Confidence 355678889999999876665 78888999999998876654 344555554444433211111
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
.........+..+...... .+.+...... ..++.++.+.. +++.+|.+.| +++|.++|+
T Consensus 96 ---~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~~~~v~~~~-~~~~tG~~~~----i~~i~~~~~ 154 (361)
T d1m32a_ 96 ---GLMGIAHHAYDCGEVARPD----------VQAIDAILNA---DPTISHIAMVH-SETTTGMLNP----IDEVGALAH 154 (361)
T ss_dssp ---HHHTCCEEEEECCTTSCCC----------HHHHHHHHHH---CTTCCEEEEES-EETTTTEECC----HHHHHHHHH
T ss_pred ---hhhhcccccccccccCCcc----------chhhHHHHHh---ccCccceEEEe-eecccccchh----hhhhhhhhc
Confidence 0111122222222211110 0222323223 46788888999 9999999998 999999999
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcc-----------
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNIN----------- 300 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~----------- 300 (430)
+||+++++|.+|+ +|.. .++......|++++| |.++|. ..+|+++.+++..+...+.....
T Consensus 155 ~~g~~~~vDa~qs-~G~~----~~d~~~~~~D~~~~s~~K~l~gp-~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (361)
T d1m32a_ 155 RYGKTYIVDAMSS-FGGI----PMDIAALHIDYLISSANKCIQGV-PGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCM 228 (361)
T ss_dssp HHTCEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCC-SSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHH
T ss_pred ccceeeEeecccc-cCcc----cccccccccceEEeeecccccCC-CCceEEEechhhhhhhccccccccccchhhhccc
Confidence 9999999999998 4432 233334567999888 777664 36899999988776554410000
Q ss_pred -cccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHchh-cCCCeeeEeecceEEEEEEeecCCc
Q psy14484 301 -IFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 301 -~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~ 374 (430)
........+.+...+.+...++.....+.. ..+.+...+.+.+.++.+. ........+. ..++.+..+ .+..
T Consensus 229 ~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~rs-~~v~~~~~p-~~~~ 306 (361)
T d1m32a_ 229 EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHS-PIITAFYSP-EDPQ 306 (361)
T ss_dssp HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBC-SSEEEEECC-CCTT
T ss_pred cccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcccCChhhcC-CcEEEEECC-CCCC
Confidence 000112334455666666666665444333 3445555666666665542 1111111222 334556554 3322
Q ss_pred cchhHHHHHHHHHHHCCcEEeec----CCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAALKNELLLRPI----GNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 375 ~~~~~a~~~~~~l~~~Gv~~~~~----~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.. ..++.+.|.++|+.+.++ ++.+|++....++++||++++++|+++|
T Consensus 307 ~~---~~~~~~~l~~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L 358 (361)
T d1m32a_ 307 YR---FSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAM 358 (361)
T ss_dssp CC---HHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred CC---HHHHHHHHHHCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 22 367899999999998764 4789998544689999999999999876
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=2.2e-19 Score=171.16 Aligned_cols=343 Identities=11% Similarity=-0.042 Sum_probs=198.6
Q ss_pred EEecccccccccCCCC--CHHHHHHHHHHHhhccc--cccCCCCCHHHHHHHHHHHhhcCC--CCC--eEEEcCCchHHH
Q psy14484 36 YLDAISSWWVNLFGHS--NSYINKALKNQLNKLEH--VMLSNLTHKPVIKLSEKLSSLTQY--KLG--HCFYGSDGASAV 107 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~--~~~--~v~~~~sgteA~ 107 (430)
.||+..|.....-|.. .|.|++|..+.+++... +....+..++++.+++.+.+..+. ..+ .+..+.+++.+.
T Consensus 28 kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 28 KINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred cEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 4788777444445543 47899998887765421 222334446667777776654421 122 345667777777
Q ss_pred HHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHH
Q psy14484 108 EVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187 (430)
Q Consensus 108 ~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (430)
..++....... +.+.|++.+|+|..+.......+.. .+.++....... ..+
T Consensus 108 ~l~~~~l~~~~------~gd~Vlvp~P~y~~y~~~~~~~g~~-------------~~~~~~~~~~~~----------~~~ 158 (396)
T d2q7wa1 108 RVAADFLAKNT------SVKRVWVSNPSWPNHKSVFNSAGLE-------------VREYAYYDAENH----------TLD 158 (396)
T ss_dssp HHHHHHHHHHS------CCCEEEEEESCCTHHHHHHHHTTCE-------------EEEEECEETTTT----------EEC
T ss_pred HHHHHHHhhcc------cceEEEEecCCCccchHHHHHcCCe-------------eEeccccccccc----------ccc
Confidence 66655443321 6788999999999886655544432 122222111000 014
Q ss_pred HHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc--cc-c---cCC
Q psy14484 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--AC-E---HAE 261 (430)
Q Consensus 188 ~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~--~~-~---~~~ 261 (430)
...+++.......++.++++.. .+|++| ..++.+.+++|.++|++|++++|.||+|.++...+... .. . ...
T Consensus 159 ~~~~~~~~~~~~~~~~~i~~~~-P~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~ 236 (396)
T d2q7wa1 159 FDALINSLNEAQAGDVVLFHGC-CHNPTG-IDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHK 236 (396)
T ss_dssp HHHHHHHHTTCCTTCEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCS
T ss_pred cchHHHHHHHhccCcEEEEecC-CcCCcC-eecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcc
Confidence 5555655655556677788777 889998 77889999999999999999999999999886654311 11 1 111
Q ss_pred CCCceeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCC-CCHHHHHHHHHHHHH------Hh--hcCHH
Q psy14484 262 IWPDFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS-GNPLACCAALATLEI------FN--KDNIL 331 (430)
Q Consensus 262 ~~~d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~aa~~~l~~------~~--~~~~~ 331 (430)
....+.++||.++. | +|+|++.++....+..............+++. .+...+.++...+.. ++ -+...
T Consensus 237 ~~~~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 315 (396)
T d2q7wa1 237 ELIVASSYSKNFGLYN-ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMR 315 (396)
T ss_dssp CEEEEEECTTTTTCGG-GCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-
T ss_pred cccccccccccccccC-CCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 12233467898765 5 89999999876554433200000001122333 334444444333310 11 12234
Q ss_pred HHHHHHHHHHHHHHHchhcCCCeeeE-eecceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeecCCEEEEeCCCCC
Q psy14484 332 QRISQDMKKITKALTSLITHPKIINF-RQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYIL 409 (430)
Q Consensus 332 ~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~~~lR~~~~~~~ 409 (430)
++++++.+.+.+.|+.+.....+..+ +..|.|.++.+. .+++++|+ +.||++.|++ ||+++ ..
T Consensus 316 ~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~-----------~e~~~~L~~e~gV~~~~g~---Ri~~a-~l 380 (396)
T d2q7wa1 316 QRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------KEQVLRLREEFGVYAVASG---RVNVA-GM 380 (396)
T ss_dssp CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC---EEEGG-GC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC-----------HHHHHHHHHhCCEEECCCC---EEEec-CC
Confidence 45566677777777665211112222 334655543332 23556664 5699888765 88765 45
Q ss_pred CHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTF 425 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l 425 (430)
++++|+.+.++|.+++
T Consensus 381 ~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 381 TPDNMAPLCEAIVAVL 396 (396)
T ss_dssp CTTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6788999988887763
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.81 E-value=3.2e-18 Score=163.80 Aligned_cols=345 Identities=11% Similarity=-0.000 Sum_probs=198.0
Q ss_pred EEecccccccccCCCC--CHHHHHHHHHHHhhc--cc-cccCCCCCHHHHHHHHHHHhhcC--CCCCe--EEEcCCchHH
Q psy14484 36 YLDAISSWWVNLFGHS--NSYINKALKNQLNKL--EH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGH--CFYGSDGASA 106 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~--v~~~~sgteA 106 (430)
.||+.-|.....-|.. .|.|++|.+...... .+ +....+..++++.+++.+.+..+ ...+. +..+.++..+
T Consensus 31 kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 31 KVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred cEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 4787766444455543 367777755443222 12 22223334566666666655432 11222 2333445555
Q ss_pred HHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHH
Q psy14484 107 VEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186 (430)
Q Consensus 107 ~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (430)
...++.+..... +++.|++.+|+|..+.......+. ....++....... ..
T Consensus 111 ~~~~~~~~~~~~------~gd~Vlip~P~~~~y~~~~~~~g~-------------~~~~~~~~~~~~~----------~~ 161 (412)
T d1yaaa_ 111 LHISAKFFSKFF------PDKLVYLSKPTWANHMAIFENQGL-------------KTATYPYWANETK----------SL 161 (412)
T ss_dssp HHHHHHHHHHHC------TTCCEEEEESCCTTHHHHHHTTTC-------------CEEEEECEETTTT----------EE
T ss_pred HHHHHHHHhccC------CCCEEecccccCchhHHHHHHcCC-------------ceecccccccccc----------cc
Confidence 544444333321 678999999999988655544333 2223332111100 01
Q ss_pred HHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc-c------ccc
Q psy14484 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF-A------CEH 259 (430)
Q Consensus 187 d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~-~------~~~ 259 (430)
+.+.++..+...+..+.++++.+ .+|++| ..++.+.+++|.++|+++++++|.||+|.++.+.+... + ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~i~i~~-P~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 239 (412)
T d1yaaa_ 162 DLNGFLNAIQKAPEGSIFVLHSC-AHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECS-SCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred cchhhhcccccCCCceEEEEecC-CCCCcc-ccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhc
Confidence 56777777776666778888888 899999 77889999999999999999999999999887655311 1 111
Q ss_pred CCCCCc---eeeeecccCC-CccccEEEEEcHHHHHhhhcc-----CCcccccccCCCCCCHHHHHHHHHHHHHH-----
Q psy14484 260 AEIWPD---FLCLSKGITG-GYLPLSLVMTTDKIYNSIYYK-----NNINIFLHSHSYSGNPLACCAALATLEIF----- 325 (430)
Q Consensus 260 ~~~~~d---~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~-----~~~~~~~~~~t~~~~~~~~~aa~~~l~~~----- 325 (430)
....+. +.++||.++- | +|+|++++++++.+.+... ............+.+.+++.++...+..-
T Consensus 240 ~~~~~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 318 (412)
T d1yaaa_ 240 LSTVSPVFVCQSFAKNAGMYG-ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQ 318 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGG-GCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred cccCCCeEEEEecCCccccCc-CceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHH
Confidence 222233 2368998774 6 8999999986543221110 00001122344455666666666555411
Q ss_pred -h--hcCHHHHHHHHHHHHHHHHHchhcCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHH-HHCCcEEeecCCE
Q psy14484 326 -N--KDNILQRISQDMKKITKALTSLITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA-LKNELLLRPIGNT 400 (430)
Q Consensus 326 -~--~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l-~~~Gv~~~~~~~~ 400 (430)
. .....+.++++.+.+.+.|+++ ..+. +..+.++|.|+.+.-. + .+++++| .+.||.+.+++
T Consensus 319 ~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~~~gG~F~~~~l------s----~e~~~~L~~e~~V~~~~g~-- 385 (412)
T d1yaaa_ 319 WHKDMVTMSSRITKMRHALRDHLVKL-GTPGNWDHIVNQCGMFSFTGL------T----PQMVKRLEETHAVYLVASG-- 385 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCTHHHHCCSSEEECCC------C----HHHHHHHHHHHCEECCTTS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCceeCCCceEEEecCc------C----HHHHHHHHHhCCEEECCCC--
Confidence 0 1233445566666666666655 2222 3334455555443211 1 2356665 45699887654
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
||+++ ..++++|+.+.++|.++++.
T Consensus 386 -Ris~~-g~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 386 -RASIA-GLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp -EEEGG-GCCTTTHHHHHHHHHHHHHH
T ss_pred -EEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 88765 35677899999999888764
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2.6e-19 Score=170.76 Aligned_cols=343 Identities=12% Similarity=-0.014 Sum_probs=188.7
Q ss_pred EecccccccccCCCC--CHHHHHHHHHHHhhc--cc-cccCCCCCHHHHHHHHHHHhhcC--CCCCeEEEcCCchHHHHH
Q psy14484 37 LDAISSWWVNLFGHS--NSYINKALKNQLNKL--EH-VMLSNLTHKPVIKLSEKLSSLTQ--YKLGHCFYGSDGASAVEV 109 (430)
Q Consensus 37 lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~--~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~~~~sgteA~~~ 109 (430)
||+.-|.+...-|.. .|.|++|........ .+ +....+..++++++++.+.+..+ ...+++..+.+++.+...
T Consensus 29 InL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (397)
T d3tata_ 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL 108 (397)
T ss_dssp EECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred EEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence 787766544555643 366777765433221 11 12222333555666666654432 245678887777766555
Q ss_pred HHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHH
Q psy14484 110 ALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189 (430)
Q Consensus 110 al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 189 (430)
++.++..... .+.+.|++.+|+|.++.......+. ..+.++........ .+.+
T Consensus 109 ~l~~~~~~~~----~pgd~Vlv~~P~y~~y~~~~~~~G~-------------~~~~v~~~~~~~~~----------~~~~ 161 (397)
T d3tata_ 109 KVGADFLKRY----FPESGVWVSDPTWENHVAIFAGAGF-------------EVSTYPWYDEATNG----------VRFN 161 (397)
T ss_dssp HHHHHHHHHH----CSSCCCEECSSCCTTHHHHHHTTTC-------------CCEECCCCCTTTSS----------CCHH
T ss_pred HHHHHHhhhc----CCCCcceecccCccccHHHHHHcCC-------------EEEEEecchhhccc----------cchH
Confidence 5444332110 1677899999999988665544333 22333332211110 1566
Q ss_pred HHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccc--ccc-ccCCCCC--
Q psy14484 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF--FAC-EHAEIWP-- 264 (430)
Q Consensus 190 ~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~--~~~-~~~~~~~-- 264 (430)
++.+.+...++++.++++.. .+|++| ..++.+.+++|.++|+++++++|.||+|.++.+.+.. ... ...+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~-p~NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T d3tata_ 162 DLLATLKTLPARSIVLLHPC-CHNPTG-ADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA 239 (397)
T ss_dssp HHHHHHTTCCSSCCCEECSS-SCSSSC-CCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHhhhcccccEEEEecC-CCCCCC-eeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCce
Confidence 77777665556677777777 899999 7788999999999999999999999999988654431 111 1112222
Q ss_pred -ceeeeecccCC-CccccEEEEEcHHHHHhhhccC-CcccccccCCCCCCHHHHHHHHHHHHHHh-hcCHHHHHHHHHHH
Q psy14484 265 -DFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKN-NINIFLHSHSYSGNPLACCAALATLEIFN-KDNILQRISQDMKK 340 (430)
Q Consensus 265 -d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-~~~~~~~~~~~~~~ 340 (430)
.+.++||.++- | +|+|++.++..+.+...... ...........+.+...+.++...+..-. ...+.+.++.+.++
T Consensus 240 i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (397)
T d3tata_ 240 LVSNSFSKIFSLYG-ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTR 318 (397)
T ss_dssp EECBCCHHHHTBTT-TCCBCCEEECSSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccccccC-ccccccccchhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 23478997765 5 89999998765543322100 00001122223333444444444332110 11222223222222
Q ss_pred HHHHHH----chhcC-C-C-eee-EeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeecCCEEEEeCCCCCCH
Q psy14484 341 ITKALT----SLITH-P-K-IIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPIGNTVYLMPPYILNK 411 (430)
Q Consensus 341 l~~~l~----~l~~~-~-~-~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~~~~lR~~~~~~~t~ 411 (430)
++++.+ .+... + . +.. .+..|+|.++.+. .+++++|++ .||.+.|++ ||+++ ..++
T Consensus 319 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~e~~~~L~~e~~V~l~~g~---Ri~~a-~~~~ 383 (397)
T d3tata_ 319 ILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------AAQVDRLREEFGVYLIASG---RMCVA-GLNT 383 (397)
T ss_dssp HHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCCCCC-----------HHHHHHHTTTTCEECCSSS---CCBTT-SCCT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEcCCCceEEecCcC-----------HHHHHHHHHhCCEEeCCCC---EEEec-cCCH
Confidence 222222 22111 1 1 111 2344555444332 245667755 489888765 78765 4678
Q ss_pred HHHHHHHHHHHHH
Q psy14484 412 NEIQHMTSAIFQT 424 (430)
Q Consensus 412 e~i~~~~~~l~~~ 424 (430)
++|+.+.++|.++
T Consensus 384 ~~i~~~~~ai~~v 396 (397)
T d3tata_ 384 ANVQRVAKAFAAV 396 (397)
T ss_dssp TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8899988888765
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=4.6e-18 Score=161.88 Aligned_cols=342 Identities=10% Similarity=-0.039 Sum_probs=194.7
Q ss_pred EEecccccccccCCCC--CHHHHHHHHHHHhhcc-c-cccCCCCCHHHHHHHHHHHhhcCC-CCCeEEEcCCchHHHHHH
Q psy14484 36 YLDAISSWWVNLFGHS--NSYINKALKNQLNKLE-H-VMLSNLTHKPVIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVA 110 (430)
Q Consensus 36 ~lD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~v~~~~sgteA~~~a 110 (430)
.||+.-|..-..-|.. .|.|++|+++.++... + +....+..++++++++.+.+.... .......+.+|+.+...+
T Consensus 28 ~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 107 (394)
T d2ay1a_ 28 KIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQA 107 (394)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHH
T ss_pred CEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHH
Confidence 3676665433344543 4789999888776543 2 222234446667777776654431 223566677777776666
Q ss_pred HHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHH
Q psy14484 111 LKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190 (430)
Q Consensus 111 l~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 190 (430)
+.+..... +.+.|++.+|+|..+.......+. ..+.++....... ..+.++
T Consensus 108 ~~~~~~~~------~gd~V~~p~p~~~~y~~~~~~~g~-------------~~v~~~~~~~~~~----------~~~~~~ 158 (394)
T d2ay1a_ 108 LELARMAN------PDLRVFVSDPTWPNHVSIMNFMGL-------------PVQTYRYFDAETR----------GVDFEG 158 (394)
T ss_dssp HHHHHHHC------TTCCEEEEESCCHHHHHHHHHHTC-------------CEEEEECEETTTT----------EECHHH
T ss_pred HHHhhhcC------CceEEEEecccccchHHHHHHcCC-------------EEEEecccchhcc----------cccchh
Confidence 55444332 678899999999876544433332 2223322111000 014556
Q ss_pred HHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCccccc--ccc---cCCC-CC
Q psy14484 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFF--ACE---HAEI-WP 264 (430)
Q Consensus 191 le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~--~~~---~~~~-~~ 264 (430)
+++......+++.++++.+ .+|++| ..++.+.+++|.++|++|++++|.||+|.++.+.+... ... .... ..
T Consensus 159 ~~~~~~~~~~~~~i~~~~~-p~NPTG-~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T d2ay1a_ 159 MKADLAAAKKGDMVLLHGC-CHNPTG-ANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHTCCTTCEEEEESS-SCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHhhcccCcEEEEeCC-CCCCCC-CCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhccccc
Confidence 6666665556677777777 889999 77889999999999999999999999999887654321 110 0111 12
Q ss_pred ceeeeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCC-CCCHHHHHHHHHHHH--HH----h--hcCHHHHH
Q psy14484 265 DFLCLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY-SGNPLACCAALATLE--IF----N--KDNILQRI 334 (430)
Q Consensus 265 d~~~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~-~~~~~~~~aa~~~l~--~~----~--~~~~~~~~ 334 (430)
.+.++||.++. | +|+|++.+.....+....-..........++ ......+..+...+. .+ . .....+++
T Consensus 237 ~~~s~sk~~~~~G-~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 315 (394)
T d2ay1a_ 237 IAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGM 315 (394)
T ss_dssp EEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCc-ccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 23368897765 5 8999999887654432210000000011122 222233333322222 11 0 02234555
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeec-ceEEEEEEeecCCccchhHHHHHHHHHH-HCCcEEeecCCEEEEeCCCCCCHH
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQK-GMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIGNTVYLMPPYILNKN 412 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~~l~-~~Gv~~~~~~~~lR~~~~~~~t~e 412 (430)
+++.+.+.+.|+++.....+..+..+ |+|.++.+. .+++++|+ +.||++.|++ ||+++ ..+++
T Consensus 316 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls-----------~~~~~~L~~~~~V~~~~g~---Ri~~a-~l~~~ 380 (394)
T d2ay1a_ 316 LRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT-----------PEQVKRIKEEFGIYMVGDS---RINIA-GLNDN 380 (394)
T ss_dssp HHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-----------HHHHHHHHHHHCEECCTTC---EEEGG-GCCTT
T ss_pred HHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC-----------HHHHHHHHHhCCEEecCCC---EEEec-CCCHH
Confidence 66666677777665211112223333 444443222 23556665 5699888764 88765 56778
Q ss_pred HHHHHHHHHHHH
Q psy14484 413 EIQHMTSAIFQT 424 (430)
Q Consensus 413 ~i~~~~~~l~~~ 424 (430)
+|+.+.++|.++
T Consensus 381 ~i~~l~~ai~~v 392 (394)
T d2ay1a_ 381 TIPILARAIIEV 392 (394)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 899988888765
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.77 E-value=2.2e-17 Score=155.99 Aligned_cols=320 Identities=13% Similarity=0.078 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCC-CCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
+|+|++|+.. ....++.....+..++.++.|+++++.+ ...|+|+.|||++++.++..+.. ++++++
T Consensus 30 ~~~Vl~am~~----~~~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~~~--------~~~~~~ 97 (377)
T d1vjoa_ 30 HPSVLQAMNV----SPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE--------PGDVVL 97 (377)
T ss_dssp CHHHHHHHSS----CCCCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------TTCEEE
T ss_pred CHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhccc--------cccccc
Confidence 5777766532 1111122223367788889999998754 34778888999999999887764 566677
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
+....+++........ ...........+..... +.+..+..... .++..+.+..
T Consensus 98 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~v~~~~- 151 (377)
T d1vjoa_ 98 IGVAGYFGNRLVDMAG-----------RYGADVRTISKPWGEVF------------SLEELRTALET--HRPAILALVH- 151 (377)
T ss_dssp EEESSHHHHHHHHHHH-----------HTTCEEEEEECCTTCCC------------CHHHHHHHHHH--HCCSEEEEES-
T ss_pred eeeechhhhhhhhhhh-----------hhcccccccccCCCCcc------------cchhhhhhhhc--Ccceeeeeee-
Confidence 6665554432221111 11111122222221111 23333333332 3566677777
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHH
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~ 288 (430)
+++++|.+.| ++++.++|+++|+++++|.+++ +|.. .++...+..|++++| |.++|+ ..+|.++.++.
T Consensus 152 ~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-~g~~----~~~~~~~~~d~~~~s~~K~~~gp-~g~~~~~~~~~ 221 (377)
T d1vjoa_ 152 AETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV----PIFLDAWGVDLAYSCSQKGLGCS-PGASPFTMSSR 221 (377)
T ss_dssp EETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS----CCCTTTTTCSEEECCSSSTTCSC-SSCEEEEECHH
T ss_pred eeccceeeec----hhhhhhhhhhccceEEEecchh-hhhh----hhcccccccceeeecccccccCC-CEEEEecchhh
Confidence 8899999998 9999999999999999999997 5432 223334456888776 566664 35778888888
Q ss_pred HHHhhhccCCc-cc------------ccccCCC-CCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcC
Q psy14484 289 IYNSIYYKNNI-NI------------FLHSHSY-SGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITH 351 (430)
Q Consensus 289 ~~~~~~~~~~~-~~------------~~~~~t~-~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~ 351 (430)
..+........ .. .....+. ..+...+....+++..+.. +....+.++...++.+.+... ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~-~~ 300 (377)
T d1vjoa_ 222 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI-GL 300 (377)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHhhhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc-Cc
Confidence 77654431100 00 0001111 2223333334444444333 344556666777777777654 11
Q ss_pred CCe-eeEeecceEEEEEEeecCCccchhHHHHHHHHHHH-CCcEEeec-----CCEEEEe-CCCCCCHHHHHHHHHHHHH
Q psy14484 352 PKI-INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALK-NELLLRPI-----GNTVYLM-PPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 352 ~~~-~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~-~Gv~~~~~-----~~~lR~~-~~~~~t~e~i~~~~~~l~~ 423 (430)
..+ ........++.+.++ ++.. ..++...|.+ .||.+..+ ++.+|++ +++.+++|+|++++++|++
T Consensus 301 ~~~~~~~~rs~~v~~~~~p-~~~~-----~~~l~~~L~~~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~ 374 (377)
T d1vjoa_ 301 SLHVEKEYRLPTLTTVCIP-DGVD-----GKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQ 374 (377)
T ss_dssp CBSSCGGGBCSSEEEEECC-TTCC-----HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred eeecChHhcCCeEEEEECC-CCCC-----HHHHHHHHHhcCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHH
Confidence 111 111122334455554 3211 3568887754 49988753 4789998 4677899999999999998
Q ss_pred HHH
Q psy14484 424 TFN 426 (430)
Q Consensus 424 ~l~ 426 (430)
+++
T Consensus 375 ~l~ 377 (377)
T d1vjoa_ 375 VLR 377 (377)
T ss_dssp HHC
T ss_pred HhC
Confidence 863
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3e-17 Score=155.50 Aligned_cols=297 Identities=8% Similarity=0.022 Sum_probs=181.3
Q ss_pred HHHHHHHHhhc----CCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 80 IKLSEKLSSLT----QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 80 ~~l~~~l~~~~----~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
.++.+.+.+++ +.+.+.++||+|||++++.+++.+.... .+++++++...+.++.......
T Consensus 39 ~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~-----~~gd~vlv~~~~~~~~~~~~~~---------- 103 (382)
T d2bkwa1 39 QRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSK-----APNKNVLVVSTGTFSDRFADCL---------- 103 (382)
T ss_dssp HHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTT-----CSCCEEEEECSSHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhc-----CCCCceEEEEechhhhhhhhhc----------
Confidence 34444444444 3456789999999999999998774311 1457888877666654221111
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
.........+......... +.+.+++.+.+ .++.++.+.. +.+++|...+ ++++.+.|+++
T Consensus 104 -~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~v~~~~-~~~~tg~~~~----~~~~~~~~~~~ 164 (382)
T d2bkwa1 104 -RSYGAQVDVVRPLKIGESV-----------PLELITEKLSQ--NSYGAVTVTH-VDTSTAVLSD----LKAISQAIKQT 164 (382)
T ss_dssp -HHTTCEEEEECCSSTTSCC-----------CHHHHHHHHHH--SCCSEEEEES-EETTTTEECC----HHHHHHHHHHH
T ss_pred -cccccccccccccCCCCcc-----------chhHHHHHhhh--ccchheeeee-cccccccccc----chhhhhhcccc
Confidence 0111112222211111111 56777777764 4566777777 8899998988 99999988876
Q ss_pred C--CEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhcc---CCccc-------
Q psy14484 236 N--IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYK---NNINI------- 301 (430)
Q Consensus 236 g--i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~---~~~~~------- 301 (430)
+ +++++|.+|+ +|.. .++......|++++| |+++|. ..+|+++.+++..+.+... +....
T Consensus 165 ~~~~~~~vDa~qs-~g~~----pid~~~~giD~~~~s~~K~l~gP-~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (382)
T d2bkwa1 165 SPETFFVVDAVCS-IGCE----EFEFDEWGVDFALTASQKAIGAP-AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRR 238 (382)
T ss_dssp CTTSEEEEECTTT-TTTS----CCCTTTTTCSEEEEESSSTTCCC-SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHH
T ss_pred ccceeeeeecccc-cccc----cccccccCeeEEeecccccCcCC-CchhhhhccHHHHhhhhhcccCCCcccchhhhhh
Confidence 5 9999999997 5432 233334456988887 888664 4689999999887654321 00000
Q ss_pred ----------ccccCCCCCCHHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHchhcCCCee---eEeecceEEE
Q psy14484 302 ----------FLHSHSYSGNPLACCAALATLEIFNKDNI---LQRISQDMKKITKALTSLITHPKII---NFRQKGMIWA 365 (430)
Q Consensus 302 ----------~~~~~t~~~~~~~~~aa~~~l~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~---~~~~~g~~~~ 365 (430)
......++++.....+..++|+.+.++.. .++.+++.+++++.+.+......+. .-.....+..
T Consensus 239 ~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~ 318 (382)
T d2bkwa1 239 WTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTA 318 (382)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEE
T ss_pred hhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEE
Confidence 00112234566677777788887765443 3455667777777776431111111 1111123344
Q ss_pred EEEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEe-CCCCCCHHHHHHHHHHHHHHH
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLM-PPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~-~~~~~t~e~i~~~~~~l~~~l 425 (430)
+... + ...+.+.|.++||.+..+ ++.+||+ +.+..++++++.+++.|+.+.
T Consensus 319 ~~~~-~--------~~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~ 376 (382)
T d2bkwa1 319 VYVA-D--------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIK 376 (382)
T ss_dssp EECS-C--------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHH
T ss_pred EcCC-C--------HHHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 4444 2 246788899999998864 2579998 667778888888888876543
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.76 E-value=4.4e-17 Score=154.63 Aligned_cols=323 Identities=11% Similarity=0.070 Sum_probs=190.8
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFI 130 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl 130 (430)
+|+|++|+.... ...+..-..+...++++.|+++++.+.. .++|+.|||+|++.++..+.. ++++++
T Consensus 29 ~~~V~~Am~~~~----~~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~~--------~~~~vl 96 (388)
T d2ch1a1 29 SKRVLTAMTNTV----LSNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLE--------EGDRVL 96 (388)
T ss_dssp CHHHHHHTTSCC----CCTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC--------TTCEEE
T ss_pred CHHHHHHhCcCC----CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhcc--------cccccc
Confidence 688887753221 1111122236667888999999875544 466677999999999998864 455666
Q ss_pred EEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccc
Q psy14484 131 CLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPL 210 (430)
Q Consensus 131 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (430)
++..+.++....... .........+..+..... +.+..+..... .+++++.+..
T Consensus 97 ~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~~v~~~~- 150 (388)
T d2ch1a1 97 IAVNGIWAERAVEMS-----------ERYGADVRTIEGPPDRPF------------SLETLARAIEL--HQPKCLFLTH- 150 (388)
T ss_dssp EEESSHHHHHHHHHH-----------HHTTCEEEEEECCTTSCC------------CHHHHHHHHHH--HCCSEEEEES-
T ss_pred ccccccccccchhhh-----------hhhccccccccccccccc------------chhhhhhhhcc--CCcceeeeee-
Confidence 655444443221111 011122233333322221 34445555543 3567777777
Q ss_pred cccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcHH
Q psy14484 211 VQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDK 288 (430)
Q Consensus 211 v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~ 288 (430)
+.+++|...+ ++++.++|+++|+++++|.+++ ++.. . ++...+..|++++| |++++. ..+|.++.+++
T Consensus 151 ~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss-~g~~--p--id~~~~~~d~~~~s~~K~~~gp-~G~g~~~~~~~ 220 (388)
T d2ch1a1 151 GDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGV--P--FYMDKWEIDAVYTGAQKVLGAP-PGITPISISPK 220 (388)
T ss_dssp EETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--C--CCTTTTTCCEEECCCC-CCCCC-SSCEEEEECHH
T ss_pred cccccccccc----hhhhcchhccccceeeeeeeec-cccc--c--cchhccCceEEEEccccccCCC-CeEEEEeccHH
Confidence 8889998888 8999999999999999999987 4322 2 23334567888888 566653 35788899988
Q ss_pred HHHhhhccC-Ccccc---------------ccc-CCCCCCHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHHHch
Q psy14484 289 IYNSIYYKN-NINIF---------------LHS-HSYSGNPLACCAALATLEIFNKDNILQ---RISQDMKKITKALTSL 348 (430)
Q Consensus 289 ~~~~~~~~~-~~~~~---------------~~~-~t~~~~~~~~~aa~~~l~~~~~~~~~~---~~~~~~~~l~~~l~~l 348 (430)
..+.....+ ..... ... .....+...+.+..++++.+....... +.+....+.+..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T d2ch1a1 221 ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM 300 (388)
T ss_dssp HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc
Confidence 766544311 00000 011 122334555666667776554444333 3333333344444433
Q ss_pred hcCCCeee-EeecceEEEEEEeecCCccchhHHHHHHHHHHHC-CcEEeec-----CCEEEEe-CCCCCCHHHHHHHHHH
Q psy14484 349 ITHPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKN-ELLLRPI-----GNTVYLM-PPYILNKNEIQHMTSA 420 (430)
Q Consensus 349 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-Gv~~~~~-----~~~lR~~-~~~~~t~e~i~~~~~~ 420 (430)
.....+.. ......++.+.++ ++.. +.++...|.++ ||.+.++ ++.+|++ ++..+|+|+|+.++++
T Consensus 301 ~~~~~~~~~~~rs~~v~~~~~p-~g~~-----~~~l~~~l~~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~a 374 (388)
T d2ch1a1 301 GLDIFVKDPRHRLPTVTGIMIP-KGVD-----WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYG 374 (388)
T ss_dssp TCCBSSCSGGGBCTTEEEEECC-TTCC-----HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred ccccccCCHHHhCCeEEEEECC-CCCC-----HHHHHHHHhhcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHH
Confidence 11111111 1122345666665 3211 35688887665 9988764 4689999 6777899999999999
Q ss_pred HHHHHHHh
Q psy14484 421 IFQTFNEV 428 (430)
Q Consensus 421 l~~~l~~~ 428 (430)
|+++|+.+
T Consensus 375 lke~L~~~ 382 (388)
T d2ch1a1 375 FKESLKAT 382 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999864
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=8.5e-18 Score=158.09 Aligned_cols=289 Identities=13% Similarity=0.043 Sum_probs=158.7
Q ss_pred HHHHHHHHHhhcCC-CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE-cCCCCCcchhhhccCCCccchhhh
Q psy14484 79 VIKLSEKLSSLTQY-KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL-QNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 79 ~~~l~~~l~~~~~~-~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~-~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
..++++...+.++. ..+.+++++||++|+..++.++. +++.++++ +...|..........+
T Consensus 52 ~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~---------~~~~vi~~~~~~~~~~~~~~~~l~g-------- 114 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK---------PKKVIHYLPELPGHPSIERSCKIVN-------- 114 (366)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC---------CSEEEEECSSSSCCTHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC---------CCCEEEEecCCCcchhHHHHHHhcC--------
Confidence 34566665665543 34579999999999999987653 45555544 3334554443333222
Q ss_pred hccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 157 TSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
..++... |+++|+++++ +++++++++. ++|+.+ .+.+.+++|.++|++||
T Consensus 115 ------~~~v~~~-----------------d~e~l~~~i~---~~tk~i~~~~-p~n~~~---~~~~~l~~i~~ia~~~~ 164 (366)
T d2aeua1 115 ------AKYFESD-----------------KVGEILNKID---KDTLVIITGS-TMDLKV---IELENFKKVINTAKNKE 164 (366)
T ss_dssp ------CEEEEES-----------------CHHHHHTTCC---TTEEEEEECB-CTTSCB---CCHHHHHHHHHHHHHHT
T ss_pred ------CeEECCC-----------------CHHHHHHhcC---CCceEEEEEe-cCCCCc---CCHHHHHHHHHHhccCc
Confidence 1223222 7888888874 6788888876 555432 23345999999999999
Q ss_pred CEEEEeccccCCCC--cccccccccCCCCCceeeee--cccCCCccccEEEEEcHHHHHhhhccCCcccccccCCCCCCH
Q psy14484 237 IHLIADEIAVGCGR--TGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312 (430)
Q Consensus 237 i~li~DEv~~g~g~--~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 312 (430)
+++|+||+|..... .+.... ... ..|++++| |+++| +++|++++++++++.+.. .....+++.++
T Consensus 165 ~~~i~De~y~~~~~~~~~~~~~-~~~--~~di~~~S~sK~~~g--~~~G~i~~~~~~i~~~~~------~~~~~g~~~~~ 233 (366)
T d2aeua1 165 AIVFVDDASGARVRLLFNQPPA-LKL--GADLVVTSTDKLMEG--PRGGLLAGKKELVDKIYI------EGTKFGLEAQP 233 (366)
T ss_dssp CCEEEECTTHHHHHHHTTCCCH-HHH--TCSEEEEETTSSSSS--CSCEEEEEEHHHHHHHHH------HHHTTTCBCCH
T ss_pred EEEEEecCccccccccccCCCH-hhc--CceEEEecccccccc--cceeEEEecHHHHHHHHH------HHhcccccCCH
Confidence 99999999862211 111111 112 34666555 66654 799999999999988775 22334455677
Q ss_pred HHHHHHHHHHHHHhhc---CHHHHHHHHHHHHHHHHHch-hcCCCee--eEeecceEEEEEEeecCCccchhHHHHHHHH
Q psy14484 313 LACCAALATLEIFNKD---NILQRISQDMKKITKALTSL-ITHPKII--NFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386 (430)
Q Consensus 313 ~~~~aa~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~l-~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~ 386 (430)
..+.++.++|+.+.-. +..++.+.....+.+.+... ...+... .....+.++.+...............+++..
T Consensus 234 ~~~~a~~~aL~tl~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 313 (366)
T d2aeua1 234 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFN 313 (366)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHH
Confidence 7777777777643211 11222222222333333322 2222211 1222233333222201110000112457777
Q ss_pred HHHC-CcEEeec------CCEEEEeCCCCCCHH-HHHHHHHHHHHHH
Q psy14484 387 ALKN-ELLLRPI------GNTVYLMPPYILNKN-EIQHMTSAIFQTF 425 (430)
Q Consensus 387 l~~~-Gv~~~~~------~~~lR~~~~~~~t~e-~i~~~~~~l~~~l 425 (430)
|+++ ||.+.|+ .+.+||+++...+++ +.+.+++++.+.+
T Consensus 314 Ll~~~gV~~ip~~~~p~~~~~lRis~~~~~~~~i~~d~l~~ai~~~l 360 (366)
T d2aeua1 314 LLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESI 360 (366)
T ss_dssp HHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEECCCCCCCCCEEEEeccccchhhCCHHHHHHHHHHHH
Confidence 6655 9987764 258999887543222 2344444444443
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.74 E-value=1.2e-16 Score=153.98 Aligned_cols=292 Identities=12% Similarity=0.092 Sum_probs=169.2
Q ss_pred HHHHHHHhhcCCCCCeEEEcCCch-HHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhcc
Q psy14484 81 KLSEKLSSLTQYKLGHCFYGSDGA-SAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSL 159 (430)
Q Consensus 81 ~l~~~l~~~~~~~~~~v~~~~sgt-eA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 159 (430)
++...+.+.++.. ....++.+|+ +++.+++.+.+... +++.|+ .+..-|.+..-++...+.
T Consensus 117 ~~~~~~~~~~g~~-~~~~~~~~~t~~~~~~~l~a~r~~~------~~~~vi-~s~~~H~s~~k~~~~~g~---------- 178 (434)
T d2z67a1 117 KILESFFKQLGLN-VHAIATPISTGMSISLCLSAARKKY------GSNVVI-YPYASHKSPIKAVSFVGM---------- 178 (434)
T ss_dssp HHHHHHHHHTTCC-CEEEEESSCHHHHHHHHHHHHHHHH------CCCEEE-EECCCCHHHHHHHHHTTC----------
T ss_pred HHHHHHHHhcCCC-cceeecCcHHHHHHHHHHHHHHHhh------cCceEE-EeccCCHHHHHHHHHhCC----------
Confidence 3445566677633 4455555444 55555555554432 444444 456677654444333321
Q ss_pred CCCeeEeCC-CCCCCCCCCCChhHHHHHHHHHHHHHHHhC--CCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcC
Q psy14484 160 LNKTYIITT-PDSRNINKGNSANEIARCAIFDLEILLKKN--HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYN 236 (430)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~g 236 (430)
....++. ++.... ..|+++|+++++++ .+++.+|+++. +++.+|...+ +++|.++|++||
T Consensus 179 --~~~~v~~~~~~~~~----------~~d~~~l~~~i~~~~~~~~~~~v~~~~-~~~~~g~~~~----l~~i~~~~~~~~ 241 (434)
T d2z67a1 179 --NMRLVETVLDGDRV----------YVPVEDIENAIKKEIELGNRPCVLSTL-TFFPPRNSDD----IVEIAKICENYD 241 (434)
T ss_dssp --EEEEECCEEETTEE----------ECCHHHHHHHHHHHHHTTCCEEEEEES-SCCTTBCCCC----HHHHHHHHHHHT
T ss_pred --cceEEEeecCCCcc----------CCCHHHHHHHHHhhhhcCCceEEEecc-CcCCCccccC----HHHHHHHHHHhC
Confidence 1122221 111110 02899999999875 35688888888 8888887777 999999999999
Q ss_pred CEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCCHH
Q psy14484 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGNPL 313 (430)
Q Consensus 237 i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~ 313 (430)
+++|+|+++.+.................|+++++ |.++++ ...|+++.+ +.+.+.+.. .....+...+..
T Consensus 242 ~~l~vD~a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~~-~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 314 (434)
T d2z67a1 242 IPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-IGGGLVYSTDAEFIKEISL------SYPGRASATPVV 314 (434)
T ss_dssp CCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHT------TSCSCBCSHHHH
T ss_pred CeEEEeccchhhhhhccccccccccCCcceEEEcCccccccC-CCccccccCcHHHHHHHHh------hcccccccchHH
Confidence 9999999986432110001111123356888777 888765 356677665 455555554 112222222222
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-cCCC-eeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCC
Q psy14484 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPK-IINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE 391 (430)
Q Consensus 314 ~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G 391 (430)
.+.++...+......+..++..++.+++.++|+++. .... +... .....+.+.+. .+ ..++...|.++|
T Consensus 315 ~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~-~~~~~~~~~~~-~~-------~~~l~~~L~~~g 385 (434)
T d2z67a1 315 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV-ESPIASCISVN-SD-------PVEIAAKLYNLR 385 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC-CCSSEEEEECS-SC-------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCC-CCCceeeeecC-CC-------HHHHHHHHHHcC
Confidence 333333333222224566777788889999998772 2111 1111 11222222222 21 356888899998
Q ss_pred cEEee----------------cCCEEEEeCCCCCCHHHHHHHHHHHHH
Q psy14484 392 LLLRP----------------IGNTVYLMPPYILNKNEIQHMTSAIFQ 423 (430)
Q Consensus 392 v~~~~----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~ 423 (430)
|.... ..+.+|++++..+|+||||.++++|++
T Consensus 386 I~g~~v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 386 VTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp EESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CeeeehhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 85321 136799999999999999999999986
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=4.7e-16 Score=144.59 Aligned_cols=317 Identities=12% Similarity=0.024 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEE
Q psy14484 52 NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~ 131 (430)
+|+|++|+.+.. .+ ++.....+..++..+.|.++++.+.+.++++.|||+|++.++..+.. +++++++
T Consensus 12 ~~~V~~am~~~~--~~--hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~~--------~g~~vlv 79 (348)
T d1iuga_ 12 HPKALEALARPQ--LH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFA--------PGERVLV 79 (348)
T ss_dssp CHHHHHHHHSCC--CC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCC--------TTCEEEE
T ss_pred CHHHHHHhcCCC--CC--CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhccc--------cccccee
Confidence 678888765431 11 11112225567788888888876667788999999999999987764 5667777
Q ss_pred EcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 132 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
+..++.|....... ......+.....+..... ++++ +. ..++..+++.. .
T Consensus 80 ~~~G~f~~~~~~~a-----------~~~~~~~~~~~~~~g~~~------------~~~~----~~--~~~~~~v~~~h-~ 129 (348)
T d1iuga_ 80 PVYGKFSERFYEIA-----------LEAGLVVERLDYPYGDTP------------RPED----VA--KEGYAGLLLVH-S 129 (348)
T ss_dssp EECSHHHHHHHHHH-----------HHTTCEEEEEECCTTCCC------------CTTT----SC--CSSCSEEEEES-E
T ss_pred ecchHHHHHHHHHH-----------HhcCcccccccccCCCcc------------cccc----cc--ccCCCeeEEEe-c
Confidence 77665553221111 111122233333321111 1111 11 24556677766 7
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcC--CEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcH
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYN--IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD 287 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~g--i~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~ 287 (430)
.+++|.+.| +++|.++|++++ +++++|.+++ +|-. ...++.++ .|++++| |+++|- ..+|.++.++
T Consensus 130 eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g~~--~i~~d~~~--iD~~~~~sqK~l~gp-pG~~~v~~s~ 199 (348)
T d1iuga_ 130 ETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVG--EVALEAMG--VDAAASGSQKGLMCP-PGLGFVALSP 199 (348)
T ss_dssp ETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGGT--CSEEEEESSSTTCCC-SCEEEEEECH
T ss_pred chhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cccc--cccccccc--CCEEEeccccceecC-Cceeeeeech
Confidence 778898888 999999999875 7899999987 4322 23344444 5888776 888763 3589999999
Q ss_pred HHHHhhhccCC-------ccccc-ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHH---HHHHHHHHHHHchhcCCCeee
Q psy14484 288 KIYNSIYYKNN-------INIFL-HSHSYSGNPLACCAALATLEIFNKDNILQRIS---QDMKKITKALTSLITHPKIIN 356 (430)
Q Consensus 288 ~~~~~~~~~~~-------~~~~~-~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~ 356 (430)
+.++.+.+... ..... ....++++...+.+..++|+.+..+ ..++.+ .....++..++.. .......
T Consensus 200 ~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~ 277 (348)
T d1iuga_ 200 RALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPK 277 (348)
T ss_dssp HHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCS
T ss_pred HHHhhhcccccccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhhhhh-hhccChh
Confidence 88776543100 00000 1223445555666777888866433 333322 1222222222222 1111111
Q ss_pred EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec-----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 357 FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 357 ~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~-----~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
.+ ...+..+.++ ++.. ...+.+.|.++|+.+.++ +..+||...-..+.++++.++++|+++|+++|
T Consensus 278 ~~-s~~v~~~~~P-~g~~-----~~~~~~~l~~~gi~i~~G~~~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~~ 348 (348)
T d1iuga_ 278 RF-SPAVAAFYLP-EGVP-----YARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEIL 348 (348)
T ss_dssp SB-CTTCEEEECC-TTCC-----HHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hc-CCeEEEEECC-CCCC-----HHHHHHHHHHCCeEEEcCccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 12 2235566665 4321 357889999999998875 46899986557899999999999999999986
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.71 E-value=2.6e-16 Score=151.53 Aligned_cols=348 Identities=11% Similarity=0.078 Sum_probs=190.8
Q ss_pred CCEEEecccccccccCCCCCHHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHH
Q psy14484 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALK 112 (430)
Q Consensus 33 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~ 112 (430)
...+||+.+..++. .+.+++..++..+.. .+..++...+|++.+++++ +.+.+++++||+.|+.++++
T Consensus 41 ~~v~iDl~sDs~t~-------am~~~~~aa~~~GDd---~Y~~dpt~~~lE~~~a~l~--G~e~al~~~SGt~An~~a~~ 108 (456)
T d1c7ga_ 41 KDIYIDLLTDSGTN-------AMSDKQWAGMMIGDE---AYAGSENFYHLEKTVKELF--GFKHIVPTHQGRGAENLLSQ 108 (456)
T ss_dssp GGCSEECSCSSSCC-------CEEHHHHHHTTSCCC---CSSSCHHHHHHHHHHHHHH--CCSEEEEESSHHHHHHHHHH
T ss_pred cceeeEcccCCCcc-------cchHHHHHHHhccch---hccCCchHHHHHHHHHHHh--CCCeEEECCCHHHHHHHHHH
Confidence 45689998875432 112222223333332 2455788899999999999 77899999999999999999
Q ss_pred HHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeE-eCCCCCCCCCCCCChhHHHHHHHHHH
Q psy14484 113 MSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI-ITTPDSRNINKGNSANEIARCAIFDL 191 (430)
Q Consensus 113 ~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l 191 (430)
+.+. +++.|+. ...|+............+.. ......... ...+.... .|++.|
T Consensus 109 ~l~~--------~Gd~Vi~-~~~f~~~~~~i~~~g~~~~~----~~~~~~~~~~~~~~~~~~------------~d~~~l 163 (456)
T d1c7ga_ 109 LAIK--------PGQYVAG-NMYFTTTRFHQEKNGATFVD----IVRDEAHDASLNLPFKGD------------IDLNKL 163 (456)
T ss_dssp HHCC--------TTEEEEE-SSCCHHHHHHHHHTTEEEEE----CBCGGGGCTTCCCSCTTC------------BCHHHH
T ss_pred HhcC--------CCCeEec-CcchHHHHHHHHHcCceeee----ccccccccccccCCcccc------------CCHHHH
Confidence 8764 4555553 32333221111111110000 000000000 00111111 289999
Q ss_pred HHHHHhCC-CCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCC-----------Cccccc-c-c
Q psy14484 192 EILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG-----------RTGKFF-A-C 257 (430)
Q Consensus 192 e~~l~~~~-~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g-----------~~g~~~-~-~ 257 (430)
++.+++++ ..+++++++. .+|.+|..+++.+.+++|.++|++||+++|+|+++. ++ +.+... . .
T Consensus 164 e~~I~~~~~~~~~~i~~e~-~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~-~~~a~~~~~~~~~~~~~~i~~i~ 241 (456)
T d1c7ga_ 164 ATLIKEKGAENIAYICLAV-TVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC-VENAYFIKEQEAGYENVSIKDIV 241 (456)
T ss_dssp HHHHHHHCGGGEEEEEEES-SBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH-HHHHHHHHHHSTTCTTSCHHHHH
T ss_pred HHHhhhcCCccceeEEeee-cccccccceecHHHHHHHHHHHHHcCCEEEEEcchh-hcchhhhcccccccCCCChhhhc
Confidence 99998773 5678888888 888888899999999999999999999999999875 11 000000 0 0
Q ss_pred ccCCCCCceeeee--cccCCCccccEEEEEc-HHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhhcCHHHH
Q psy14484 258 EHAEIWPDFLCLS--KGITGGYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNKDNILQR 333 (430)
Q Consensus 258 ~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~aa~~~l~~~~~~~~~~~ 333 (430)
....-..|++++| |.++++ .-|+++.+ +++.+.+..- ........++++. ...+.+....+....+.+..++
T Consensus 242 ~~~~~~ad~~s~s~~K~~~~~--~GG~i~~~~~~l~~~~r~~--~~~~~g~~~~g~~~~~~~~a~a~~l~e~~~~~~l~~ 317 (456)
T d1c7ga_ 242 HEMFSYADGCTMSGKKDCLVN--IGGFLCMNDEEMFSAAKEL--VVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEH 317 (456)
T ss_dssp HHHHTTCSEEEEETTTTTCCS--SCEEEEESCHHHHHHHHHH--HHHHTCCTTTTTCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccccccccEEEecccccccc--ceeEEEcCCHHHHHHHHHh--ccccCCCcccchhhHHHHHHHHHHHHHhcCHHHHHH
Confidence 0000125777766 555432 13455555 4455444320 0000112223322 2333333333444334455556
Q ss_pred HHHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEee-cCCccchhH-HHHHH-HHHHHCCcEEeec-------------
Q psy14484 334 ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVII-EDPEQIETF-SKKFF-VAALKNELLLRPI------------- 397 (430)
Q Consensus 334 ~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~-a~~~~-~~l~~~Gv~~~~~------------- 397 (430)
..++.++|.++|++. ..+.+. +..+....++... ........+ +..+. +.+.+.||...+.
T Consensus 318 r~~~~~~L~e~L~~~-g~~vv~--p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~ 394 (456)
T d1c7ga_ 318 RVKQVRYLGDKLREA-GVPIVE--PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGE 394 (456)
T ss_dssp HHHHHHHHHHHHHHT-TCCBCS--SCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCC
T ss_pred HHHHHHHHHHHHHhc-cCCccc--CCCCcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecccCccccccCCcccC
Confidence 666778898988876 333322 1223333333210 000001111 23333 3345668765431
Q ss_pred -----CCEEEEeCC-CCCCHHHHHHHHHHHHHHHH
Q psy14484 398 -----GNTVYLMPP-YILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 398 -----~~~lR~~~~-~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+||+++ ...|++|||.++++|+++++
T Consensus 395 ~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~ 429 (456)
T d1c7ga_ 395 NHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ 429 (456)
T ss_dssp BCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT
T ss_pred ccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh
Confidence 135899987 45699999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=4.4e-16 Score=150.40 Aligned_cols=304 Identities=11% Similarity=0.054 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhhcCCCC-CeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhh
Q psy14484 78 PVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIY 156 (430)
Q Consensus 78 ~~~~l~~~l~~~~~~~~-~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~ 156 (430)
...++.++++++++.+. ....++++|+++...++.++++.. . ++++.|| .+...|.+..-++...+.
T Consensus 95 le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~---~-~~~~~vi-~~~~~H~s~~~a~~~~g~------- 162 (445)
T d3bc8a1 95 ITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK---R-PKAKYII-WPRIDQKSCFKSMVTAGF------- 162 (445)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH---C-TTCCEEE-EECCCCHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh---C-CCCCEEE-EcCcccHHHHHHHHHcCC-------
Confidence 33456677888876443 467888999987776655554322 1 1334444 466668765555444432
Q ss_pred hccCCCeeEeC---CCCCCCCCCCCChhHHHHHHHHHHHHHHHhC-CCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 157 TSLLNKTYIIT---TPDSRNINKGNSANEIARCAIFDLEILLKKN-HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 157 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
+...+. .++.... |+++|++++.+. .+++.+|++.. +++.+|.+.+ +++|.++|
T Consensus 163 -----~~~~v~~~~~~~~~~i------------d~~~l~~~i~~~~~~~~~~v~~~~-~~~~~G~~~~----~~~i~~~~ 220 (445)
T d3bc8a1 163 -----EPVVIENVLEGDELRT------------DLKAVEAKIQELGPEHILCLHSTT-ACFAPRVPDR----LEELAVIC 220 (445)
T ss_dssp -----EEEEECCEEETTEEEC------------CHHHHHHHHHHHCGGGEEEEEEES-SCCTTBCCCC----HHHHHHHH
T ss_pred -----eeEEEEeeccCccccc------------CHHHHHHHHHhccccCeEEEEEeC-CCCCCeeehh----HHHHHHHH
Confidence 112222 1222222 899999999876 34688898888 8888898877 99999999
Q ss_pred HhcCCEEEEeccccCCCC-ccc--ccccccCCCCCceeeee--cccCCCccccEEEEEcH-HHHHhhhccCCcccccccC
Q psy14484 233 NNYNIHLIADEIAVGCGR-TGK--FFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD-KIYNSIYYKNNINIFLHSH 306 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~-~g~--~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~-~~~~~~~~~~~~~~~~~~~ 306 (430)
+++|+++|+|+++.+... ... .++.... ..|+++++ |.++++ ...|+++.+. ...+.+.. . +..
T Consensus 221 ~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~--~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~------~-~~~ 290 (445)
T d3bc8a1 221 ANYDIPHVVNNAYGLQSSKCMHLIQQGARVG--RIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISK------M-YPG 290 (445)
T ss_dssp HHHTCCEEEECTTTTTCHHHHHHHHHHHHHS--CCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHH------H-SCS
T ss_pred HHhCCcEEEEccchhhhhhccccchhccCcC--CcceEEecCccccccC-CCCceeeeCChHHHHHHHH------H-Hhh
Confidence 999999999999874311 111 1111111 25777766 877765 3567777764 44444433 1 111
Q ss_pred CCCCCHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHch-hcCCC-eeeEeecceEEEEEEeecCCccchhHHH
Q psy14484 307 SYSGNPLACCAALATLEIFNK---DNILQRISQDMKKITKALTSL-ITHPK-IINFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 307 t~~~~~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l-~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
+-.+. ....++..+..+.. ....+...++.+++.+.|+++ ...+. +...+.......+.+. ...........
T Consensus 291 ~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~ 367 (445)
T d3bc8a1 291 RASAS--PSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLK-TIDGHHDKAVT 367 (445)
T ss_dssp CBCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECT-TTSSSSSCHHH
T ss_pred cccCc--chHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEee-eccccCCCCHH
Confidence 11111 22233333333322 334455666777888888766 22221 2223333344444443 21111111135
Q ss_pred HHHHHHHHCCcEEee-------------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Q psy14484 382 KFFVAALKNELLLRP-------------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 382 ~~~~~l~~~Gv~~~~-------------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
.+...|.+.||.... ....+|+.++..+|+||||.++++|+++++++
T Consensus 368 ~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~ 439 (445)
T d3bc8a1 368 QLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 439 (445)
T ss_dssp HHHHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 677778888763110 01458999999999999999999999999864
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.7e-15 Score=143.94 Aligned_cols=338 Identities=8% Similarity=-0.059 Sum_probs=201.4
Q ss_pred CCHHHHHHHHHHHhhccccccCCC--CCHHHHHHHHHHHhhcCCCC-----CeEEEcCCchHHHHHHHHHHHHhhh----
Q psy14484 51 SNSYINKALKNQLNKLEHVMLSNL--THKPVIKLSEKLSSLTQYKL-----GHCFYGSDGASAVEVALKMSFHYWY---- 119 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~-----~~v~~~~sgteA~~~al~~~~~~~~---- 119 (430)
-+|++.+.+.+.+.+-. ...-.+ ..+...++.++|+++++.+. ..-.+|+|||||+..|+.+++..++
T Consensus 66 ~~~~~~~l~~~~~~~N~-~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~ 144 (450)
T d1pmma_ 66 DDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 144 (450)
T ss_dssp CCHHHHHHHHHTTTCBT-TCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCC-CCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhh
Confidence 57888888877654411 111111 23566677788999886321 1258999999999999999886543
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHhC
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPD-SRNINKGNSANEIARCAIFDLEILLKKN 198 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~ 198 (430)
..|.+....+++. ...|-+.. +....+..+.+.++... +++. |+++|+++++
T Consensus 145 ~~g~~~~~~~~~~-~~~H~s~~------------Kaa~~~gi~~~~v~~~~~~~~~------------d~~~L~~~i~-- 197 (450)
T d1pmma_ 145 AAGKPTDKPNLVC-GPVQICWH------------KFARYWDVELREIPMRPGQLFM------------DPKRMIEACD-- 197 (450)
T ss_dssp HHTCCCSCCEEEE-SSCCHHHH------------HHHHHTTCEEEECCCBTTBCSC------------CHHHHHHHCC--
T ss_pred hcCCCCCCceEEe-cccHHHHH------------HHHHHcCCCceEeeecCCCCcC------------cHHHHHHHhh--
Confidence 2344444445554 34564322 22222333445555433 2333 8999999885
Q ss_pred CCCeEEEEEccccccCCCcccCChHHHHHHHHH------HHhcCCEEEEeccccCCCCccccccccc----CCC-CCcee
Q psy14484 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI------CNNYNIHLIADEIAVGCGRTGKFFACEH----AEI-WPDFL 267 (430)
Q Consensus 199 ~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l------~~~~gi~li~DEv~~g~g~~g~~~~~~~----~~~-~~d~~ 267 (430)
+++.+|++.. ..+.+|.+.| +++|.++ |+++|++++||.++.|+.. .+.... .++ ..|-+
T Consensus 198 -~~t~~Vv~t~-gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~---p~~~~~~~~~~~~~~aDSi 268 (450)
T d1pmma_ 198 -ENTIGVVPTF-GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLA---PFVAPDIVWDFRLPRVKSI 268 (450)
T ss_dssp -TTEEEEECBB-SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTH---HHHCTTCCCSTTSTTEEEE
T ss_pred -hCceEEEeee-eeccCCCccc----cchhhHHHHHHHHHhccCcEEEeehhhcccee---eeechhhhhhhcccceeEe
Confidence 5788888888 8888998877 6655555 5678999999999886521 011111 122 36778
Q ss_pred eee--cccCCCccccEEEEEcHHHH--HhhhccCC-cccccccCCCCC--CHHHHHHHHHHHHHHhhc---CHHHHHHHH
Q psy14484 268 CLS--KGITGGYLPLSLVMTTDKIY--NSIYYKNN-INIFLHSHSYSG--NPLACCAALATLEIFNKD---NILQRISQD 337 (430)
Q Consensus 268 ~~s--K~l~gG~~~ig~~~~~~~~~--~~~~~~~~-~~~~~~~~t~~~--~~~~~~aa~~~l~~~~~~---~~~~~~~~~ 337 (430)
+++ |.+.+. ..+|+++.+.+-. ..+..... ........+..+ +.....+...++..+..+ +..++..++
T Consensus 269 ~~s~HK~~~~p-~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~l 347 (450)
T d1pmma_ 269 SASGHKFGLAP-LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQV 347 (450)
T ss_dssp EEETTTTTCCC-SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecChhhccCCC-CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 887 554444 5789999975432 11111000 000001112222 223344455556555443 445666778
Q ss_pred HHHHHHHHHchhcCCCeeeEee--cceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c----CCEEEEeCCC
Q psy14484 338 MKKITKALTSLITHPKIINFRQ--KGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I----GNTVYLMPPY 407 (430)
Q Consensus 338 ~~~l~~~l~~l~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~----~~~lR~~~~~ 407 (430)
+++|.++|++......+....+ .-..++|.+. +.....-. ...+.+.|.++|..+.. . ...+|+.+..
T Consensus 348 a~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~-~~~~~~~~-~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~ 425 (450)
T d1pmma_ 348 AAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK-DGEDPGYT-LYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRR 425 (450)
T ss_dssp HHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEEC-TTCCCSSC-HHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCT
T ss_pred HHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecC-CcccCCCC-HHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccC
Confidence 8888888877633222222111 1224566665 32211111 35688999999976532 1 1478999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q psy14484 408 ILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 408 ~~t~e~i~~~~~~l~~~l~~~ 428 (430)
..|+++++.+++.|+++++++
T Consensus 426 ~~t~e~~d~lv~dl~~~v~~l 446 (450)
T d1pmma_ 426 GFEMDFAELLLEDYKASLKYL 446 (450)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.68 E-value=7.1e-15 Score=141.78 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhhcCCCC---------CeEEEcCCchHHHHHHHHHHHHhhhhc----C--CC----CCcEEEEEcCCCC
Q psy14484 77 KPVIKLSEKLSSLTQYKL---------GHCFYGSDGASAVEVALKMSFHYWYNK----G--FL----NKKKFICLQNSYH 137 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~---------~~v~~~~sgteA~~~al~~~~~~~~~~----g--~~----~~~~vl~~~~~yh 137 (430)
....++.++++++++.+. ..-++++|||+||..|+.++|.....+ + .. .++.++..+..-|
T Consensus 113 ~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H 192 (476)
T d1js3a_ 113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH 192 (476)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEeccccc
Confidence 455667788888885321 246899999999999999998753211 1 00 1234555555555
Q ss_pred CcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhC---CCCeEEEEEccccccC
Q psy14484 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN---HNKIAAIIIEPLVQCA 214 (430)
Q Consensus 138 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~ep~v~~~ 214 (430)
-+..-++. .+..+...++....++. |+++|++.|++. +..+.+|+..- ..++
T Consensus 193 ~Si~ka~~------------~lGl~~~~v~~d~~~~m------------d~~~L~~~i~~~~~~g~~p~~Vvata-Gtt~ 247 (476)
T d1js3a_ 193 SSVERAGL------------IGGVKLKAIPSDGKFAM------------RASALQEALERDKAAGLIPFFVVATL-GTTS 247 (476)
T ss_dssp HHHHHHHH------------HHTCEEEEECCCTTSCC------------CHHHHHHHHHHHHHTTCEEEEEEEEB-SCTT
T ss_pred HHHHHHHH------------hcCceEEEeccCCCCCc------------CHHHHHHHHHHHHhcCCCcEEEeecC-CCcc
Confidence 44322222 22234456666555555 899999999864 33467777777 8888
Q ss_pred CCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCC-CCceeeee--cccCCCccccEEEEEcHHH-H
Q psy14484 215 GGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI-WPDFLCLS--KGITGGYLPLSLVMTTDKI-Y 290 (430)
Q Consensus 215 ~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~-~~d~~~~s--K~l~gG~~~ig~~~~~~~~-~ 290 (430)
+|.+.| +++|.++|++|+++||+|.++.|+...-...-....++ ..|-+++. |.+... ...|+++.+... .
T Consensus 248 ~G~iDp----l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P-~~~g~~l~r~~~~~ 322 (476)
T d1js3a_ 248 CCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-FDCSAMWVKRRTDL 322 (476)
T ss_dssp TCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEEESCHHHH
T ss_pred ceeecc----HHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccC-CcceeecccchHHH
Confidence 999999 99999999999999999999887632211111111233 36777765 876655 478888887532 2
Q ss_pred -HhhhccC------C--cc---cccccCCCCCCHHHHHHHHHHHHHHhhcCHH---HHHHHHHHHHHHHHHchhcCCCee
Q psy14484 291 -NSIYYKN------N--IN---IFLHSHSYSGNPLACCAALATLEIFNKDNIL---QRISQDMKKITKALTSLITHPKII 355 (430)
Q Consensus 291 -~~~~~~~------~--~~---~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~ 355 (430)
..+.... . .. .....+.-.+........+.+++.+..+.+. ++..++++++.+.|++. +.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~---~~fe 399 (476)
T d1js3a_ 323 TGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD---PRFE 399 (476)
T ss_dssp HGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTEE
T ss_pred HHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC---CCeE
Confidence 1111100 0 00 0000111111122223445566655554444 44566777777777654 3322
Q ss_pred e-EeecceEEEEEEeecCCccchhHHHHHHHHHHHCC-cEEeec---C-CEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Q psy14484 356 N-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNE-LLLRPI---G-NTVYLMPP-YILNKNEIQHMTSAIFQTFNEV 428 (430)
Q Consensus 356 ~-~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~G-v~~~~~---~-~~lR~~~~-~~~t~e~i~~~~~~l~~~l~~~ 428 (430)
- .++.-.+++|.+. +. ..+..++.+++.+.| +.+.+. + .++|+++. ..++++||+.+++.|++..+++
T Consensus 400 l~~~p~l~iV~Fr~~-~~----d~~n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 400 VCAEVTLGLVCFRLK-GS----DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp ECSCCCSSEEEEEES-SC----HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCceEEEEEEcc-CC----hHHHHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1333445666665 32 223457888888887 334443 2 37898865 6678999999999999999987
Q ss_pred h
Q psy14484 429 I 429 (430)
Q Consensus 429 ~ 429 (430)
+
T Consensus 475 l 475 (476)
T d1js3a_ 475 L 475 (476)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.67 E-value=9.4e-16 Score=145.63 Aligned_cols=282 Identities=9% Similarity=-0.006 Sum_probs=167.4
Q ss_pred HHHHHHHHhhc---C-C--CCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccch
Q psy14484 80 IKLSEKLSSLT---Q-Y--KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFK 153 (430)
Q Consensus 80 ~~l~~~l~~~~---~-~--~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~ 153 (430)
.+|++.+.+++ + + +..+|++++|++|++++++.++........-.+.++||++.|.|..+...+......
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~---- 178 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKK---- 178 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBT----
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCC----
Confidence 35555555543 2 1 333699999999999999998753211000015688999999998775443332221
Q ss_pred hhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHH
Q psy14484 154 EIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICN 233 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~ 233 (430)
...+. . |.+.++++++ ++++++++.. +||++|.+.. +.
T Consensus 179 --------~~~~~-~------------------D~~~~~~~~~---~~~~ii~l~s-PnNPtG~l~~-----------~v 216 (425)
T d2hoxa1 179 --------GYVWA-G------------------NAANYVNVSN---PEQYIEMVTS-PNNPEGLLRH-----------AV 216 (425)
T ss_dssp --------TEEEE-E------------------EGGGGTTCSC---GGGEEEEEES-SCTTTCCCCC-----------CS
T ss_pred --------CCccC-C------------------CHHHHHhhCC---CCceEEEEEC-CCCCCcchhh-----------hh
Confidence 11111 0 4555555443 4566666666 6788885421 33
Q ss_pred hcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCCCCCC
Q psy14484 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSYSGN 311 (430)
Q Consensus 234 ~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~ 311 (430)
.+++.+|.||+|-+...+. .. .......-+-+|||.++- | +|+|+++++ +.+++.+.. +....+++.+
T Consensus 217 ~~~~~~I~DEaY~~~~f~~--~~-~~~~~~Ivl~S~SK~fglaG-lRiGw~i~~~~~i~~~~~~------~~~~~~~~vs 286 (425)
T d2hoxa1 217 IKGCKSIYDMVYYWPHYTP--IK-YKADEDILLFTMSKFTGHSG-SRFGWALIKDESVYNNLLN------YMTKNTEGTP 286 (425)
T ss_dssp STTCEEEEECTTCSTTTSC--CC-SCBCCSEEEEEHHHHTSCGG-GCCEEEEECCHHHHHHHHH------HHHHHTSSCC
T ss_pred hhCCEEEEeccccCccccc--hh-hhcCCeEEEEeCHHhccCcc-hheeeEEeCCHHHHHHHHH------hhccCcccCC
Confidence 4689999999985332221 11 111111123378998874 6 899997775 556666554 3344567778
Q ss_pred HHHHHHHHHHHHHHhh---------cCHH----HHHHHHHHHHHHHHHchhc-----CCCe-------eeEeecceEEEE
Q psy14484 312 PLACCAALATLEIFNK---------DNIL----QRISQDMKKITKALTSLIT-----HPKI-------INFRQKGMIWAF 366 (430)
Q Consensus 312 ~~~~~aa~~~l~~~~~---------~~~~----~~~~~~~~~l~~~l~~l~~-----~~~~-------~~~~~~g~~~~~ 366 (430)
.+++.++.++|+.... .++. +.++++.+++++.|++... .|.. ......+.+.++
T Consensus 287 ~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl 366 (425)
T d2hoxa1 287 RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWV 366 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEE
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeee
Confidence 8888888887764211 1232 3445555556666654321 1110 123445566666
Q ss_pred EEeecCCccchhHHHHHHHHHHHCCcEEeec------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPI------GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 367 ~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~------~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+. .+. . ..+.+.|+++||++.|+ ++++|++ +..++|++++++++|++.++
T Consensus 367 ~~~-~~~---~---~~~~~lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 367 KCE-WEE---D---KDCYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp EEC-SGG---G---CSHHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred eCC-CCh---H---HHHHHHHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence 554 211 1 22455678899999985 3689995 56789999999999999875
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1e-13 Score=128.71 Aligned_cols=290 Identities=13% Similarity=0.132 Sum_probs=180.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....|++.|+++- +.+..+.++||..|+..++..+.. ++++||+.+..|+|.......
T Consensus 55 R~~nPT~~~LE~~la~LE--g~~~a~~~~SGmaAi~~~l~~l~~--------~Gd~vl~~~~~Yg~t~~l~~~------- 117 (392)
T d1gc0a_ 55 RISNPTLNLLEARMASLE--GGEAGLALASGMGAITSTLWTLLR--------PGDEVLLGNTLYGCTFAFLHH------- 117 (392)
T ss_dssp --CCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSCCSHHHHHHHH-------
T ss_pred CCCChHHHHHHHHHHHHh--CCcceeehhhHHHHHHHHHHhhcc--------CCCeeecccccchhhhhhhhh-------
Confidence 566788999999999998 557888899999999999887765 678999999999886433222
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+..+..++.++... |+++++++++ +++++|++|. +.|++..++. ++.|.++|
T Consensus 118 --~~~~~Gi~~~~~d~~-----------------d~~~~~~ai~---~~t~lv~~Es-p~NP~l~v~D----i~~i~~ia 170 (392)
T d1gc0a_ 118 --GIGEFGVKLRHVDMA-----------------DLQALEAAMT---PATRVIYFES-PANPNMHMAD----IAGVAKIA 170 (392)
T ss_dssp --TGGGGTCEEEEECTT-----------------CHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred --hhccCCcccccCCcc-----------------CHHHHHHhCC---CCCeEEEecc-cccceeeecc----hHHHHHHH
Confidence 122223344454432 7889999885 6899999999 9999987777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++++|.+.+ ++..+..+....|++ +.+|.++| +-.-.|.++++++.+..++. ........-.
T Consensus 171 ~~~g~~~vvDnT~a------tP~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~----~~~~~~~G~~ 240 (392)
T d1gc0a_ 171 RKHGATVVVDNTYC------TPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRL----QGLKDMTGAV 240 (392)
T ss_dssp GGGTCEEEEECTTT------HHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHH----THHHHHTCCC
T ss_pred HhcCCEEEEecCcc------CccccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHH----HHHHHccCCc
Confidence 99999999999864 112233334456776 56699988 43456778888877654432 0011111122
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.+|..+......|+.+. -..++..+++..+.+.|++.+. +|... ...+-|.++.|++. .+
T Consensus 241 ~~p~da~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~-~~-- 315 (392)
T d1gc0a_ 241 LSPHDAALLMRGIKTLN--LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK-GG-- 315 (392)
T ss_dssp CCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET-TH--
T ss_pred CChhhHHHHHhccccHH--HHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCCcEEEEEEe-CC--
Confidence 35554444444443221 1234455566666666654211 12111 22344778888886 42
Q ss_pred cchhHHHHHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+.+|++.|. ..+. +..| ..+.+|+++.. |+.+.+++.|+++|+
T Consensus 316 --~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 316 --IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL----EDIDDLLADVQQALK 389 (392)
T ss_dssp --HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence 222456777653 1211 1111 12679998775 445556666666665
Q ss_pred H
Q psy14484 427 E 427 (430)
Q Consensus 427 ~ 427 (430)
.
T Consensus 390 a 390 (392)
T d1gc0a_ 390 A 390 (392)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.61 E-value=4.7e-14 Score=136.55 Aligned_cols=321 Identities=9% Similarity=0.003 Sum_probs=167.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhh-ccCCC-ccc
Q psy14484 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGAL-AVTNI-QSF 152 (430)
Q Consensus 75 ~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~-~~~~~-~~~ 152 (430)
+.....++++.+++++ +.++++|+++||++.+.|+..+... +++.|| .+...|.+..... .+... +.|
T Consensus 64 ~~~~i~eae~~~A~~~--ga~~a~f~~~Gtt~~n~a~i~a~~~-------~gd~Vi-~~~~~H~Sv~~~~~~l~~~~~~~ 133 (462)
T d1c4ka2 64 HEGPAVAAEKHAARVY--NADKTYFVLGGSSNANNTVTSALVS-------NGDLVL-FDRNNHKSVYNSALAMAGGRPVY 133 (462)
T ss_dssp TBTHHHHHHHHHHHHT--TCSEEEEESSHHHHHHHHHHHHHCC-------TTCEEE-EETTCCHHHHHHHTTTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHh--CCCeEEEECCchHHHHHHHHHHhcC-------CCCeEE-ecccchHHHHHHHHHHhcCCcee
Confidence 3456788999999999 5679999999988777665444321 455554 4566776654322 22221 111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHH------HHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI------FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~ 226 (430)
.. ...+. .....+.+..++....+ ..+++++ ..++..+++.. +++..|.+.+ ++
T Consensus 134 ~~-----------~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~-~~~~~G~~~d----l~ 193 (462)
T d1c4ka2 134 LQ-----------TNRNP-YGFIGGIYDSDFDEKKIRELAAKVDPERAK---WKRPFRLAVIQ-LGTYDGTIYN----AH 193 (462)
T ss_dssp EC-----------EEECT-TCCEEEECGGGSCHHHHHHHTTTSSHHHHT---CSCCBSEEEEE-SBCTTSEEEC----HH
T ss_pred ee-----------ccccc-ccccCCCChHHhhHHHHHhhhhhhcHHhhh---ccCCceeEEEE-eeeeccchhh----HH
Confidence 10 00000 00000001111100011 1222333 23444455555 6678898888 99
Q ss_pred HHHHHHHhcCCEEEEeccccCC-CCccc-ccccccCC------CCCceeeee--cccCCCccccEEEE-EcHHHHHhhhc
Q psy14484 227 LVREICNNYNIHLIADEIAVGC-GRTGK-FFACEHAE------IWPDFLCLS--KGITGGYLPLSLVM-TTDKIYNSIYY 295 (430)
Q Consensus 227 ~l~~l~~~~gi~li~DEv~~g~-g~~g~-~~~~~~~~------~~~d~~~~s--K~l~gG~~~ig~~~-~~~~~~~~~~~ 295 (430)
+|.++|+++|++|++||++... ...+. .......+ ...|++++| |.+++. ..|+++ .+.........
T Consensus 194 ~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~--~~g~ll~~~~~~~~~~~~ 271 (462)
T d1c4ka2 194 EVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGF--SQTSQIHKKDSHIKGQLR 271 (462)
T ss_dssp HHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCC--TTCEEEEEECGGGTTSTT
T ss_pred HHHHHHHHcCCEEEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccc--cceEEEEeccccccccch
Confidence 9999999999999999998722 11111 00111111 124777765 887752 234444 44433221110
Q ss_pred cCC----cccccccCCCCCCHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHchhcCCC------ee-------
Q psy14484 296 KNN----INIFLHSHSYSGNPLACCAALATLEIFN---KDNILQRISQDMKKITKALTSLITHPK------II------- 355 (430)
Q Consensus 296 ~~~----~~~~~~~~t~~~~~~~~~aa~~~l~~~~---~~~~~~~~~~~~~~l~~~l~~l~~~~~------~~------- 355 (430)
... .+......+.+++...++...++..++. .+++.++..++.+++++++.++...-. +.
T Consensus 272 ~~~~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~ 351 (462)
T d1c4ka2 272 YCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDG 351 (462)
T ss_dssp CCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGS
T ss_pred hhhHHHHHHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 000 0001112333445544444444444443 245667777888899998876522100 00
Q ss_pred ------------------------eEeecce-----EEEEEEee---cCCccc--hhHHHHHHHHHHHCCcEEeecC-CE
Q psy14484 356 ------------------------NFRQKGM-----IWAFDVII---EDPEQI--ETFSKKFFVAALKNELLLRPIG-NT 400 (430)
Q Consensus 356 ------------------------~~~~~g~-----~~~~~~~~---~~~~~~--~~~a~~~~~~l~~~Gv~~~~~~-~~ 400 (430)
....... -+.+...+ .....+ .-.+..+.+.|.++||.+...+ +.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~ 431 (462)
T d1c4ka2 352 DTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNS 431 (462)
T ss_dssp CHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSE
T ss_pred chHhhhcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCe
Confidence 0000000 01222110 000000 0013578888999999775544 78
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+||.++..+|+++++.++++|++..+.
T Consensus 432 i~~~~s~~~T~edid~li~aL~ei~r~ 458 (462)
T d1c4ka2 432 ILFLMTPAETPAKMNNLITQLLQLQRL 458 (462)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.60 E-value=5.1e-14 Score=132.52 Aligned_cols=313 Identities=14% Similarity=0.067 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
++-++++.+.+..+... .-+...++++.+++.+ +.+.+++++|||.|+.+|++++.- ++++.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~~-----~G~~v~~~E~~la~~~--g~~~ai~~~sgt~Al~~al~al~~-------~~gdeVi~~ 77 (376)
T d1mdoa_ 12 AEELAAVKTVLDSGWIT-----TGPKNQELEAAFCRLT--GNQYAVAVSSATAGMHIALMALGI-------GEGDEVITP 77 (376)
T ss_dssp HHHHHHHHHHHHHTCCS-----SSHHHHHHHHHHHHHH--CCSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCc-----CCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHhCC-------CCCCEEEEe
Confidence 56667888887664221 1356688999999999 557899999999999999987522 156788888
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
+.+|+.........+..+ +++... +.... |++.|++++. +++++|++.+ +
T Consensus 78 ~~~~~~~~~ai~~~g~~p-------------v~~d~~~~~~~~------------d~~~l~~~i~---~~tkaIi~~h-~ 128 (376)
T d1mdoa_ 78 SMTWVSTLNMIVLLGANP-------------VMVDVDRDTLMV------------TPEHIEAAIT---PQTKAIIPVH-Y 128 (376)
T ss_dssp SSSCHHHHHHHHHTTCEE-------------EEECBCTTTCCB------------CHHHHHHHCC---TTEEEECCBC-G
T ss_pred cccccccccchhccccce-------------eeecccccccCC------------CHHHHHHhcC---CCCeEEEEeC-C
Confidence 877766544444333322 233322 22222 8899999985 5788888655 3
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee--cccCCCccccEEEEEcH-H
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS--KGITGGYLPLSLVMTTD-K 288 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~~ig~~~~~~-~ 288 (430)
.|...+ +++|.++|+++|+++|.|++|+ +|-.-........+ ..+.+|. |.++.| .-|+++.+. +
T Consensus 129 ---~G~~~~----~~~i~~i~~~~~i~vIeD~a~a-~g~~~~~~~~g~~g--~~~~Sf~~~K~l~~g--~GG~i~t~~~~ 196 (376)
T d1mdoa_ 129 ---AGAPAD----LDAIYALGERYGIPVIEDAAHA-TGTSYKGRHIGARG--TAIFSFHAIKNITCA--EGGIVVTDNPQ 196 (376)
T ss_dssp ---GGCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCEETTEETTSSS--EEEEECCTTSSSCSS--SCEEEEESCHH
T ss_pred ---CCCccc----hhHHHHHHHhcCceEEeccchh-ccCeeCCeeccccc--CccccCCCcCCCCCC--CCCEEEEechh
Confidence 354455 8999999999999999999997 43210000011112 1233443 877764 346777754 4
Q ss_pred HHHhhhc---cCCcc---------------cccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc
Q psy14484 289 IYNSIYY---KNNIN---------------IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT 350 (430)
Q Consensus 289 ~~~~~~~---~~~~~---------------~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 350 (430)
+.+.+.. .+... ....+..+..+.+.++.+..-|+.+ +++.++.++..+++.+.|+++..
T Consensus 197 l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~ 274 (376)
T d1mdoa_ 197 FADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPF 274 (376)
T ss_dssp HHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccc
Confidence 4443322 11000 0001222333445555555545433 45667778888888888877621
Q ss_pred C--CCee-eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee--------------------------cCCEE
Q psy14484 351 H--PKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP--------------------------IGNTV 401 (430)
Q Consensus 351 ~--~~~~-~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~--------------------------~~~~l 401 (430)
. +... .....-..+.+.+. ....... -+++.+.|.++||-++. ..+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i 351 (376)
T d1mdoa_ 275 QPLSLPSWEHIHAWHLFIIRVD-EARCGIT--RDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERIC 351 (376)
T ss_dssp EECCCCSSCEECCCSCEEEECC-HHHHSSC--HHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEE
T ss_pred cccccccccccccccccccccc-cccchhh--HHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEE
Confidence 1 1111 11111111111111 1000000 24799999999987642 02457
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 402 YLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 402 R~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+-.+...|++|++.+++.|++++
T Consensus 352 ~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 352 SLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EccCCCCCCHHHHHHHHHHHHHHh
Confidence 776666779999999999998864
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.59 E-value=3.8e-13 Score=124.83 Aligned_cols=255 Identities=12% Similarity=0.147 Sum_probs=161.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+..++....|++.|+++- +.+..++++||..|+..++..++. ++++||+.+..|.+.....
T Consensus 58 ~R~~nPT~~~LE~~la~LE--gg~~a~~~sSGmaAi~~~l~~ll~--------~Gd~vi~~~~~Yg~t~~~~-------- 119 (397)
T d1y4ia1 58 TRLGNPTTDALEKKLAVLE--RGEAGLATASGISAITTTLLTLCQ--------QGDHIVSASAIYGCTHAFL-------- 119 (397)
T ss_dssp CTTSCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESSSCHHHHHHH--------
T ss_pred eCCCCHHHHHHHHHHHHHh--CCccceeehHHHHHHHHHHhhccC--------CCCeeeeecccccccchhh--------
Confidence 4567789999999999998 556788899999999999877765 6789999999987653221
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
+..+.....++.++... |.+.++++++ +++++|++|. +.|++..+.. +++|.++
T Consensus 120 -~~~l~~~Gi~~~~vd~~-----------------d~~~~~~~i~---~~Tklv~~Es-p~NP~l~v~D----i~~i~~i 173 (397)
T d1y4ia1 120 -SHSMPKFGINVRFVDAG-----------------KPEEIRAAMR---PETKVVYIET-PANPTLSLVD----IETVAGI 173 (397)
T ss_dssp -HTHHHHTTCEEEEECTT-----------------SHHHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred -hcccCCCceEeeccCCC-----------------CHHHHHHhcC---CCCcEEEecC-Ccccceeecc----cHHHHHH
Confidence 11122233444555432 7889998885 6899999999 9998886666 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCC
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
|+++|+++++|..... ++.+.......|++ ++.|.++| +-.-.|+++++++.+...+. ........-
T Consensus 174 A~~~gi~~vvDnT~at------P~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~----~~~~~~~G~ 243 (397)
T d1y4ia1 174 AHQQGALLVVDNTFMS------PYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF----VGLKDITGG 243 (397)
T ss_dssp HHHTTCEEEEECTTTC------TTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH----THHHHTTCC
T ss_pred hhcCCceEEecCcccC------cccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHH----HHHHhCcCC
Confidence 9999999999997542 12233333446766 56699988 32446678888876654321 001111112
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..+|..+.-+.-.|+.+. -..++-.+++..+.+.|++.+ .+|.+. ...+-|.++.|++. .+
T Consensus 244 ~l~p~~a~l~~rgl~TL~--lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~-~~- 319 (397)
T d1y4ia1 244 CMSPFNAWLTLRGVKTLG--IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIA-GG- 319 (397)
T ss_dssp CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEET-TH-
T ss_pred cCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEEEec-CC-
Confidence 235554444443343221 123445556666666665421 122211 23445888888886 42
Q ss_pred ccchhHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAA 387 (430)
Q Consensus 374 ~~~~~~a~~~~~~l 387 (430)
.+.+.+|.+.|
T Consensus 320 ---~~~~~~f~~~L 330 (397)
T d1y4ia1 320 ---LEAGRRMINSV 330 (397)
T ss_dssp ---HHHHHHHHHTC
T ss_pred ---HHHHHHHHHcC
Confidence 22234666654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.54 E-value=1.9e-12 Score=120.33 Aligned_cols=289 Identities=15% Similarity=0.152 Sum_probs=178.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....|+++|+++- +.+.++.++||..|+..++..+.. +++.||+....|.+........
T Consensus 63 R~~nPt~~~LE~~la~LE--gg~~a~~~sSGMaAi~~~l~~l~~--------~Gd~iv~~~~~Yg~t~~l~~~~------ 126 (398)
T d1qgna_ 63 RYGNPTTVVLEEKISALE--GAESTLLMASGMCASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETI------ 126 (398)
T ss_dssp GGCCHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHHSC--------SSCEEEEETTSCHHHHHHHHHT------
T ss_pred CCCChHHHHHHHHHHHHh--CCceEEEecCcchHHHHHHhhccc--------ccccccccccccchhhhhhccc------
Confidence 456788999999999998 557899999999999999887654 6889999999997753332221
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
+.....+..++... +.++.++.+. .+++++|++|. +.|++..++. +++|.++|
T Consensus 127 ---~~~~gi~~~~~~~~-----------------~~~~~~~~~~--~~~t~~v~~Es-psNP~l~v~D----i~~ia~ia 179 (398)
T d1qgna_ 127 ---LPKMGITATVIDPA-----------------DVGALELALN--QKKVNLFFTES-PTNPFLRCVD----IELVSKLC 179 (398)
T ss_dssp ---GGGGTCEEEEECSS-----------------CHHHHHHHHH--HSCEEEEEEES-SCTTTCCCCC----HHHHHHHH
T ss_pred ---cccccccccccccc-----------------chhhhhhhhc--cccceEEEccC-ccccccccch----HHHHHHHH
Confidence 11222333444322 3343443333 26899999999 9999886666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 309 (430)
+++|+++|||.+.+. +..+..+....|++ +++|.++| +-+-.|++..++++.+.+.. +.....-.
T Consensus 180 ~~~g~~~vVDnT~at------P~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~------~~~~~G~~ 247 (398)
T d1qgna_ 180 HEKGALVCIDGTFAT------PLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN------LHHILGGA 247 (398)
T ss_dssp HHTTCEEEEECTTTC------TTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH------HHHHHCCC
T ss_pred hhcCCEEEecceeec------cccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhh------hcccCCCc
Confidence 999999999997541 22233344556777 46699988 33446677788887766554 11111122
Q ss_pred CCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCCc
Q psy14484 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDPE 374 (430)
Q Consensus 310 ~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~~ 374 (430)
.+|..+......|+.+. -..++..+++..+.+.|++-+ .+|++. ...+-|.++.|++. .+
T Consensus 248 l~p~~a~ll~rgl~TL~--lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~-g~-- 322 (398)
T d1qgna_ 248 LNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD-GD-- 322 (398)
T ss_dssp CCHHHHHHHHHHGGGHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES-SC--
T ss_pred CCHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeec-CC--
Confidence 35554444433333221 123445556666666665421 122221 13455778888776 42
Q ss_pred cchhHHHHHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 375 QIETFSKKFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 375 ~~~~~a~~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.+.+.+|++.|. ..+. +..| .++.+|+++.+ |+.+.+++.|+++|+
T Consensus 323 --~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 323 --LLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALD 396 (398)
T ss_dssp --HHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHh
Confidence 222456777763 2221 1111 12679998764 445666777777776
Q ss_pred H
Q psy14484 427 E 427 (430)
Q Consensus 427 ~ 427 (430)
+
T Consensus 397 ~ 397 (398)
T d1qgna_ 397 S 397 (398)
T ss_dssp H
T ss_pred c
Confidence 5
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=3.5e-12 Score=118.02 Aligned_cols=289 Identities=11% Similarity=0.121 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....|++.|+++- +-+..+.++||-.|+..++..++. +++.|++.+..|.+........
T Consensus 46 R~~nPt~~~le~~la~LE--gg~~a~~~sSGMaAi~~~l~~l~~--------~gd~vv~~~~~yg~t~~~~~~~------ 109 (384)
T d1cs1a_ 46 RRGNPTRDVVQRALAELE--GGAGAVLTNTGMSAIHLVTTVFLK--------PGDLLVAPHDCYGGSYRLFDSL------ 109 (384)
T ss_dssp TTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEETTCCHHHHHHHHHH------
T ss_pred CCCCHHHHHHHHHHHHHh--CCCceEEecChHHHHHHHHhhccc--------ccceecccccccchhhhhhhhh------
Confidence 566788999999999998 556889999999999999887765 6788888888886543221111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.........++... |.+++++++. +++++|++|+ +.|++-.++. +++|.++|
T Consensus 110 ---~~~~g~~~~~~d~~-----------------d~~~~~~~~~---~~t~~v~~Es-psNP~l~v~D----i~~i~~ia 161 (384)
T d1cs1a_ 110 ---AKRGCYRVLFVDQG-----------------DEQALRAALA---EKPKLVLVES-PSNPLLRVVD----IAKICHLA 161 (384)
T ss_dssp ---HTTTSCEEEEECTT-----------------CHHHHHHHHH---TCCSEEEEEC-SCTTTCCCCC----HHHHHHHH
T ss_pred ---hcccccccccccCC-----------------CHHHHHhhcc---ccccEEEEec-cccccceecc----HHHHhhhh
Confidence 11112222333222 6788888886 5788999999 9999886666 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|||.+.... ..+..+....|++ +.+|.++| |-.-.|+++.+ +.+.+.+.. .......
T Consensus 162 ~~~g~~~vVDNT~atP------~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~------~~~~~G~ 229 (384)
T d1cs1a_ 162 REVGAVSVVDNTFLSP------ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW------WANNIGV 229 (384)
T ss_dssp HHTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH------HHHHHTC
T ss_pred hhcCcEEEEeccccCc------ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhh------hhhhhhh
Confidence 9999999999986411 1222233446766 56699988 33345566664 444444433 0111112
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..+|..+......|+.+. -..++..+++..+.+.|+..+ .+|++. ...+-|.++.+++. .+
T Consensus 230 ~~~p~~a~ll~rgL~TL~--lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~-~~- 305 (384)
T d1cs1a_ 230 TGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD-GD- 305 (384)
T ss_dssp BCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES-SC-
T ss_pred ccccccHHHHhhccchhH--HHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEEeec-ch-
Confidence 235554443333333221 123445556666666665421 122211 13445888888887 43
Q ss_pred ccchhHHHHHHHHHHHC------C----cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAALKN------E----LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~~~------G----v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+.+.+|.+.|.-- | ++..| .++.+|+++.+. +++.+++.|+++|
T Consensus 306 ---~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGlE----d~eDLi~Dl~~AL 378 (384)
T d1cs1a_ 306 ---EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGF 378 (384)
T ss_dssp ---HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCcceeccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHH
Confidence 22235666655311 1 12211 136799987754 4555666666666
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
+..
T Consensus 379 ~aa 381 (384)
T d1cs1a_ 379 RAA 381 (384)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=4.8e-12 Score=117.07 Aligned_cols=287 Identities=13% Similarity=0.183 Sum_probs=172.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccc
Q psy14484 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152 (430)
Q Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~ 152 (430)
+..++....|+++|+++- +.+.++.++||..|+. ++..++. ++++||+....|.+.......
T Consensus 45 R~~nPt~~~le~~la~LE--~~~~a~~fsSGMaAis-all~ll~--------~Gd~vv~~~~~Yg~t~~l~~~------- 106 (380)
T d1ibja_ 45 RSGNPTRDALESLLAKLD--KADRAFCFTSGMAALS-AVTHLIK--------NGEEIVAGDDVYGGSDRLLSQ------- 106 (380)
T ss_dssp TTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHH-HHHTTSC--------TTCEEEEESSCCHHHHHHHHH-------
T ss_pred CCCChHHHHHHHHHHHHc--CCceEEehhhHHHHHH-HHHHhhC--------CCCEEEEEecccccccchhhh-------
Confidence 566788899999999998 4567889999999986 4433322 567888888887554222111
Q ss_pred hhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH
Q psy14484 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC 232 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~ 232 (430)
.+........++... +.++++++++ +++++|++|. +.|+...++. +++|.++|
T Consensus 107 --~~~~~gi~~~~~d~~-----------------~~~~~~~ai~---~~t~li~~Et-psNP~l~v~D----i~~i~~iA 159 (380)
T d1ibja_ 107 --VVPRSGVVVKRVNTT-----------------KLDEVAAAIG---PQTKLVWLES-PTNPRQQISD----IRKISEMA 159 (380)
T ss_dssp --TSGGGTCEEEEECTT-----------------SHHHHHHHCC---SSEEEEEECS-SCTTTCCCCC----HHHHHHHH
T ss_pred --hhccccccccccCcc-----------------hHHHHHHHhc---cCccEEEecc-cccccccccc----HHHHHHHH
Confidence 112222333444332 7788888884 6899999999 9999987777 99999999
Q ss_pred HhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCCCc-cccEEEEEc-HHHHHhhhccCCcccccccCCC
Q psy14484 233 NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITGGY-LPLSLVMTT-DKIYNSIYYKNNINIFLHSHSY 308 (430)
Q Consensus 233 ~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~gG~-~~ig~~~~~-~~~~~~~~~~~~~~~~~~~~t~ 308 (430)
+++|+++|+|++.+.. ..+.......|++ +++|.++|.. .-.|+++.+ +++.+.+.. .+ ...+.
T Consensus 160 ~~~g~~~vVDnT~atP------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~---~~-~~~G~-- 227 (380)
T d1ibja_ 160 HAQGALVLVDNSIMSP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF---LQ-NSEGS-- 227 (380)
T ss_dssp HTTTCEEEEECTTTCT------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH---HH-HHTTC--
T ss_pred HHcCCeEEeecccccc------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHh---hc-cccCC--
Confidence 9999999999986522 1222333446766 5669998832 335565665 455555543 00 11222
Q ss_pred CCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCC
Q psy14484 309 SGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDP 373 (430)
Q Consensus 309 ~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~ 373 (430)
..+|..+......|+.+. -..++..+++..+.+.|++-+. +|+.. ...+-|.++.+.+. +
T Consensus 228 ~l~p~~a~ll~rgl~Tl~--lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~-~-- 302 (380)
T d1ibja_ 228 GLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-S-- 302 (380)
T ss_dssp BCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-C--
T ss_pred cCCHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCcccccccccccccccccccccc-H--
Confidence 234554444444443221 1244556666677777764311 22211 12345566666544 2
Q ss_pred ccchhHHHHHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 374 EQIETFSKKFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 374 ~~~~~~a~~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
.+.+.+|.+.|. ..++ +..| ..+.+|+++.+ |+.+.+++.|+++|
T Consensus 303 ---~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl----E~~eDLi~Dl~qAl 375 (380)
T d1ibja_ 303 ---VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAF 375 (380)
T ss_dssp ---HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHHHHcCCCcCeEEEEecc----CCHHHHHHHHHHHH
Confidence 222466777653 1111 1111 02568998775 45666777777777
Q ss_pred HHh
Q psy14484 426 NEV 428 (430)
Q Consensus 426 ~~~ 428 (430)
+.+
T Consensus 376 ~~l 378 (380)
T d1ibja_ 376 KTF 378 (380)
T ss_dssp HSC
T ss_pred Hhc
Confidence 653
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.50 E-value=1.2e-13 Score=129.34 Aligned_cols=319 Identities=10% Similarity=0.019 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHhhccccc--------cCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 52 NSYINKALKNQLNKLEHVM--------LSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
+++|.+++++++..+...+ +.....+..++.++.|+++++...+ +|+|++|++++++.|+......
T Consensus 15 p~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l~~----- 89 (361)
T d2c0ra1 15 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLK----- 89 (361)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcccc-----
Confidence 5789999988764432111 1111226678889999999975433 7888887776665554433321
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
+++++++...+..+.....+. .........+..+..... +++.+++.+. ....
T Consensus 90 --~~~~~l~~~~g~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~--~~~~ 142 (361)
T d2c0ra1 90 --EGQTANYVMTGSWASKALKEA-----------KLIGDTHVAASSEASNYM------------TLPKLQEIQL--QDNA 142 (361)
T ss_dssp --TTCEEEEEECSHHHHHHHHHH-----------HHHSCEEEEEECGGGTTC------------SCCCGGGCCC--CTTE
T ss_pred --CCCceEEEeechhhhhhhhhh-----------hhcCceeeeecccccccc------------chhhhhhhcc--cCcc
Confidence 456666665443332211111 111122222222211111 3344444443 2233
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEE
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 282 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~ 282 (430)
..+. +++|...+ +.++.++|+++|+++++|.+++ ++.. . ++...+..|+.+.+|.++.+ +.++
T Consensus 143 ~~v~------~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g~~--~--id~~~~di~~~s~~k~~~~~--~~~~ 205 (361)
T d2c0ra1 143 AYLH------LTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-ILSR--P--FDLNQFGLVYAGAQKNLGPS--GVTV 205 (361)
T ss_dssp EEEE------EESEETTT----TEECSSCCCCTTSCEEEECTTT-TTSS--C--CCGGGCSEEEEETTTTTCCS--SCEE
T ss_pred eEEE------Eeccccee----cceEEEeeccCCceEEEEeecc-cccc--c--cccccceeEEEecccccccc--cCcE
Confidence 3332 33455666 6677889999999999999987 4322 2 33334556788888888753 3444
Q ss_pred EEE-cHHHHHhhhccCCc-----ccccccCCCCCCHHHHHHHHHHHHHHhhcC----HHHHHHHHHHHHHHHHHchh-cC
Q psy14484 283 VMT-TDKIYNSIYYKNNI-----NIFLHSHSYSGNPLACCAALATLEIFNKDN----ILQRISQDMKKITKALTSLI-TH 351 (430)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~----~~~~~~~~~~~l~~~l~~l~-~~ 351 (430)
++. .+.+.+.-...... ............+.....+...+....... ...+.+.....+........ ..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (361)
T d2c0ra1 206 VIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFY 285 (361)
T ss_dssp EEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSS
T ss_pred EEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhccccc
Confidence 444 33322111100000 000111222223333333333333222222 22333333333333333321 11
Q ss_pred CCe--eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 352 PKI--INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 352 ~~~--~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
+.. ...+. -..+.+... ++ ..+..+.+.|.++||.+..+. +.+|++...++|+||++.+++.|++..+
T Consensus 286 ~~~~~~~~rS-~~~~~~~~~-~~-----~~~~~~~~~L~~~GI~~~~G~~~~g~~RIs~~~~~~~edv~~Lv~~l~~~~~ 358 (361)
T d2c0ra1 286 RGCVDVDSRS-DMNITFRLA-SE-----ELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 358 (361)
T ss_dssp EESSCGGGBC-SSEEEEECS-CH-----HHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCChhhcc-ceEEEEECC-Cc-----ccHHHHHHHHHHCCCEEecCCCcCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 111 11222 234445444 21 114678999999999987763 3589999999999999999999998654
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=5.9e-12 Score=117.00 Aligned_cols=294 Identities=11% Similarity=0.114 Sum_probs=176.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCc
Q psy14484 71 LSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQ 150 (430)
Q Consensus 71 ~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~ 150 (430)
..+..++....+++.++++- +.+.++.++||..|+..++..+.. ++++||+....|-+......
T Consensus 52 Y~R~~nPt~~~le~~la~LE--g~~~a~~~~SGMaAi~~~l~~l~~--------~Gd~iv~~~~~Yg~T~~l~~------ 115 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELE--GGAGCVLFPCGAAAVANSILAFIE--------QGDHVLMTNTAYEPSQDFCS------ 115 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEETTSCHHHHHHHH------
T ss_pred eECCCChhHHHHHHHHHHHh--CCccEEEeccccceeeehhhcccC--------CCCeEEEecccccchhhhhh------
Confidence 34567899999999999998 557899999999999999887764 67888888888855422211
Q ss_pred cchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHH
Q psy14484 151 SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVRE 230 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~ 230 (430)
..+.....++.++... |.++++++++ +++++|++|. +.|+...+.. ++.+.+
T Consensus 116 ---~~l~~~Gi~~~~~d~~-----------------d~~~~~~~i~---~~t~~i~~Et-psNP~l~v~D----i~~i~~ 167 (391)
T d1cl1a_ 116 ---KILSKLGVTTSWFDPL-----------------IGADIVKHLQ---PNTKIVFLES-PGSITMEVHD----VPAIVA 167 (391)
T ss_dssp ---HTGGGGTCEEEEECTT-----------------CGGGGGGTCC---TTEEEEEEES-SCTTTCCCCC----HHHHHH
T ss_pred ---hcccccccccccccCc-----------------cccccccccc---cccceeeecc-cCcccccccc----cHHHHH
Confidence 1122223333444322 5667776664 6899999999 9998876666 999999
Q ss_pred HHHhc--CCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCccccccc
Q psy14484 231 ICNNY--NIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHS 305 (430)
Q Consensus 231 l~~~~--gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~ 305 (430)
+|+++ |+++++|...+.. ..+..+....|++ +.+|.++| +-.-.|.++.+++..+.+.. .....+
T Consensus 168 ~a~~~~~g~~~vVDnT~atP------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~----~~~~~G 237 (391)
T d1cl1a_ 168 AVRSVVPDAIIMIDNTWAAG------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRE----NAYLMG 237 (391)
T ss_dssp HHHHHCTTCEEEEECTTTTT------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHH----HHHHTT
T ss_pred HHHhccCCcEEEEeccccch------hhhcccccccceEEeecchhccccccccccceeccccccccchh----hhhccc
Confidence 99774 9999999986522 2223333446766 56699988 32345667777776655543 011122
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEee
Q psy14484 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVII 370 (430)
Q Consensus 306 ~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~ 370 (430)
.+ .+|..+......|+.+. -..++..+++..+.+.|++.+ .+|... ...+.|.++.|.+.
T Consensus 238 ~~--~~p~~a~ll~rgl~TL~--lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~- 312 (391)
T d1cl1a_ 238 QM--VDADTAYITSRGLRTLG--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK- 312 (391)
T ss_dssp CC--CCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES-
T ss_pred cc--CCchhhhhhhccchhHH--HHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceeeeec-
Confidence 22 24543333333333221 123444556666666665321 112111 13455667778876
Q ss_pred cCCccchhHHHHHHHHHH--HCCc--------EEee----------------cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 371 EDPEQIETFSKKFFVAAL--KNEL--------LLRP----------------IGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 371 ~~~~~~~~~a~~~~~~l~--~~Gv--------~~~~----------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
.... .+. +.+|.+.|. ..+. ++.| .++.+|+++.. |+++.+++.|+++
T Consensus 313 ~~~~-~e~-~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~A 386 (391)
T d1cl1a_ 313 KKLN-NEE-LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAG 386 (391)
T ss_dssp SCCC-HHH-HHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHH
T ss_pred CCCC-HHH-HHHHHHcCCcceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHH
Confidence 4321 111 234555442 2221 1111 13578998764 5678888888888
Q ss_pred HHHhh
Q psy14484 425 FNEVI 429 (430)
Q Consensus 425 l~~~~ 429 (430)
|++++
T Consensus 387 L~~i~ 391 (391)
T d1cl1a_ 387 FARIV 391 (391)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 88764
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.46 E-value=5.7e-12 Score=118.47 Aligned_cols=315 Identities=12% Similarity=0.106 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
.+-.+++.+.++.+... ...-+...++++.+++.+ +..+++.++|||.|+.+|++++-- ++++.|++.
T Consensus 13 ~~~~~~~~~~l~~g~~~---~~~g~~v~~fE~~~a~~~--g~~~~v~~~SGt~Al~lal~~l~~-------~~gdeVi~p 80 (384)
T d1b9ha_ 13 DAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHH--GAAHALAVTNGTHALELALQVMGV-------GPGTEVIVP 80 (384)
T ss_dssp HHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHcCC-------CCCCEEEEe
Confidence 45577888888765321 122356778999999999 667899999999999999986521 156788888
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEcccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLV 211 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v 211 (430)
..+|..........+.. .+++... .+... |++.+++.+. .++++|++.. .
T Consensus 81 ~~t~~a~~~ai~~~g~~-------------p~~~d~~~~~~~~------------d~~~~~~~i~---~~tk~i~~~~-~ 131 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAV-------------TVPVDVDAATYNL------------DPEAVAAAVT---PRTKVIMPVH-M 131 (384)
T ss_dssp SSSCTHHHHHHHHTTCE-------------EEEECBCTTTCCB------------CHHHHHHHCC---TTEEEECCBC-G
T ss_pred ccccccccccccccccc-------------ccccccccccccc------------chhhhccccc---cccccccccc-c
Confidence 77775543333332221 1233322 22221 7888888774 6788887655 3
Q ss_pred ccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceee--e--ecccCCCccccEEEEEc-
Q psy14484 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLC--L--SKGITGGYLPLSLVMTT- 286 (430)
Q Consensus 212 ~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~--~--sK~l~gG~~~ig~~~~~- 286 (430)
. |.... ++++.++|+++++++|.|.+|+ +|-. +.-...|-.-|+.+ | +|.++.| .-|+++++
T Consensus 132 ~---g~~~d----~~~i~~~~~~~~i~lieD~a~a-~ga~---~~g~~~g~~g~~~~~Sf~~~K~i~~g--~GG~i~t~~ 198 (384)
T d1b9ha_ 132 A---GLMAD----MDALAKISADTGVPLLQDAAHA-HGAR---WQGKRVGELDSIATFSFQNGKLMTAG--EGGAVVFPD 198 (384)
T ss_dssp G---GCCCC----HHHHHHHHHHHTCCBCEECTTC-TTCE---ETTEEGGGSSSCEEEECCTTSSSCSS--SCEEEEECT
T ss_pred c---ccccc----cccchhhhhhhhhhhhhhhcee-cccc---cCCEecCcccccceeccccccccccc--ccchhhhhh
Confidence 3 32333 8899999999999999999997 4221 00011122234444 4 3877664 34667665
Q ss_pred HHHHHhhh---ccCCcc-----c---ccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcC-CCe
Q psy14484 287 DKIYNSIY---YKNNIN-----I---FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKI 354 (430)
Q Consensus 287 ~~~~~~~~---~~~~~~-----~---~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~ 354 (430)
+++.+.+. ..+..+ . ...+..+-.+.+.++.+...|+.+ +++.++-+++.+++.+.|..+... +..
T Consensus 199 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~ 276 (384)
T d1b9ha_ 199 GETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQG 276 (384)
T ss_dssp TCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECC
T ss_pred HHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhccccccccc
Confidence 44443322 111000 0 111233344566555555555433 345566677777888888765221 000
Q ss_pred e---eEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------------------------------
Q psy14484 355 I---NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI---------------------------------- 397 (430)
Q Consensus 355 ~---~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~---------------------------------- 397 (430)
. .......++.+.+. . .. ..--+.+.+.|.++||-+...
T Consensus 277 ~~~~~~~~~~~~~~~~~~-~-~~--~~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~ 352 (384)
T d1b9ha_ 277 GDVRADRNSHYMAMFRIP-G-LT--EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAIS 352 (384)
T ss_dssp CCTTCCBCCCSEEEEECT-T-CC--HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHH
T ss_pred ccccccccccccccceec-c-cc--cccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHH
Confidence 0 11111222333332 1 11 111257999999999976521
Q ss_pred CCEEEEeCCCCCC-HHHHHHHHHHHHHHHHH
Q psy14484 398 GNTVYLMPPYILN-KNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 398 ~~~lR~~~~~~~t-~e~i~~~~~~l~~~l~~ 427 (430)
.+.+.+-.+...| ++|++.+++.|++++.+
T Consensus 353 ~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 353 SDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp HHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred hCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 1346665555666 67999999999999875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.44 E-value=2.8e-11 Score=112.48 Aligned_cols=293 Identities=15% Similarity=0.127 Sum_probs=176.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+..++....|++.|+++- +.+..+.++||..|+..++..+.. +++.|++.+..|.+.....
T Consensus 54 sR~~nPT~~~le~~la~LE--g~~~a~~~sSGmaAi~~~~l~l~~--------~gd~vv~~~~~yg~t~~~~-------- 115 (394)
T d1e5ea_ 54 TRLGNPTVSNLEGKIAFLE--KTEACVATSSGMGAIAATVLTILK--------AGDHLISDECLYGCTHALF-------- 115 (394)
T ss_dssp TTTCCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESCCCHHHHHHH--------
T ss_pred cCCCCHHHHHHHHHHHHHh--CCcceeeeccchHHHHHHHHhhcc--------cccccccccceeehhhHhH--------
Confidence 3567899999999999998 556888899999999988876654 6788888887775542221
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
...+.....++.++... |.++++++++ +++++|++|+ +.|++..+.. ++++.+.
T Consensus 116 -~~~~~~~gi~~~~~d~~-----------------d~~~~~~~i~---~~t~lv~~Et-p~NP~l~v~D----i~~~~~~ 169 (394)
T d1e5ea_ 116 -EHALTKFGIQVDFINTA-----------------IPGEVKKHMK---PNTKIVYFET-PANPTLKIID----MERVCKD 169 (394)
T ss_dssp -HTHHHHTTCEEEEECTT-----------------STTHHHHHCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred -HHHhhccceeeeccCCC-----------------CHHHHHHhhc---ccccEEEEec-cCCcceeeeh----hhhhhhc
Confidence 11122333444455433 6678888885 6899999999 8888876666 8888776
Q ss_pred HH-hcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCC
Q psy14484 232 CN-NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 307 (430)
Q Consensus 232 ~~-~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t 307 (430)
++ ++|+++|+|.+.+.. ..+..+....|++ +.+|.++| +-.-.|+++++++.....+.. .+.....
T Consensus 170 ~~~~~g~~vvvDnT~atP------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~----~~~~~~G 239 (394)
T d1e5ea_ 170 AHSQEGVLVIADNTFCSP------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMV----GIKDITG 239 (394)
T ss_dssp HHTSTTCEEEEECTTTCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHT----CCCCCCC
T ss_pred cccccCeEEEecCcccCc------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHH----HHHHhhC
Confidence 65 578999999986422 2233334445776 56699988 434466788888766544320 0111111
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-----cCCCee----------eEeecceEEEEEEeecC
Q psy14484 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-----THPKII----------NFRQKGMIWAFDVIIED 372 (430)
Q Consensus 308 ~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-----~~~~~~----------~~~~~g~~~~~~~~~~~ 372 (430)
-..+|..+.-....|+.+. -..++..+++..+.+.|++-+ .+|+.. ...+-|.++.|++. .+
T Consensus 240 ~~lsp~~a~ll~rgl~TL~--lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~-~~ 316 (394)
T d1e5ea_ 240 SVISPHDAWLITRGLSTLN--IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK-SG 316 (394)
T ss_dssp CCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET-TH
T ss_pred CCCChHHHHHHHhhchhHH--HHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeeecc-CC
Confidence 1234544443333333221 123455556666666665431 122211 12345778888776 42
Q ss_pred CccchhHHHHHHHHHH--HCC--------cEEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy14484 373 PEQIETFSKKFFVAAL--KNE--------LLLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQT 424 (430)
Q Consensus 373 ~~~~~~~a~~~~~~l~--~~G--------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~ 424 (430)
.+.+.+|.+.|+ ..+ ++..| ..+.+|+++.+ |+++.+++.|+++
T Consensus 317 ----~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl----Ed~eDLi~Dl~qA 388 (394)
T d1e5ea_ 317 ----FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQG 388 (394)
T ss_dssp ----HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHH
Confidence 122455666543 111 12212 02579998775 4566667777777
Q ss_pred HHHhh
Q psy14484 425 FNEVI 429 (430)
Q Consensus 425 l~~~~ 429 (430)
|++++
T Consensus 389 l~~l~ 393 (394)
T d1e5ea_ 389 LDALL 393 (394)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77664
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.42 E-value=2.9e-11 Score=110.05 Aligned_cols=283 Identities=15% Similarity=0.138 Sum_probs=170.0
Q ss_pred HHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccC
Q psy14484 81 KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLL 160 (430)
Q Consensus 81 ~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
.|+++++++- +.+..+.++||..|+..++..++. ++++||+.+..|.|..... +..+....
T Consensus 2 aLE~~la~Le--g~~~a~~~sSGMaAi~~~l~~ll~--------~Gd~iv~~~~~Yg~t~~~~---------~~~l~~~g 62 (331)
T d1pffa_ 2 ALEGKIAKLE--HAEACAATASGMGAIAASVWTFLK--------AGDHLISDDCLYGCTHALF---------EHQLRKFG 62 (331)
T ss_dssp HHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEEESCCCHHHHHHH---------HTHHHHTT
T ss_pred HHHHHHHHHh--CCCeEEEECCHHHHHHHHHHHHhC--------CCCEEEEeCCCchHHHHHH---------HHHHHhcC
Confidence 4677888887 557888899999999998877665 6688999999997653221 11122233
Q ss_pred CCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHH-HhcCCEE
Q psy14484 161 NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREIC-NNYNIHL 239 (430)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~-~~~gi~l 239 (430)
.++.++... |.+.++++++ +++++|++|. +.|+...+.. ++.+.+++ +++|+++
T Consensus 63 i~~~~~d~~-----------------d~~~~~~~i~---~~t~~i~~Es-~~np~~~v~d----~~~~~~~~a~~~~~~~ 117 (331)
T d1pffa_ 63 VEVDFIDMA-----------------VPGNIEKHLK---PNTRIVYFET-PANPTLKVID----IEDAVKQARKQKDILV 117 (331)
T ss_dssp CEEEEECTT-----------------STTHHHHTCC---TTEEEEEEES-SCTTTCCCCC----HHHHHHHHTTSSSCEE
T ss_pred eEEEEeccc-----------------chhhHhhhcc---cccceeeeec-cccccccccc----chhhhhhhhcccCceE
Confidence 444554432 6778888774 6899999999 8888876666 88888875 6789999
Q ss_pred EEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcHHHHHhhhccCCcccccccCCCCCCHHHHH
Q psy14484 240 IADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316 (430)
Q Consensus 240 i~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 316 (430)
|+|...+. +..+.......|++ +++|.++| +-.-.|+++.+++....... ..+........+|..+.
T Consensus 118 vVDnT~at------p~~~~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~----~~~~~~~G~~l~p~~a~ 187 (331)
T d1pffa_ 118 IVDNTFAS------PILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKS----QGIKDITGAIISPHDAW 187 (331)
T ss_dssp EEECTTTH------HHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHH----TCCCCCCCCCCCHHHHH
T ss_pred Eeeccccc------cccccccccCCCEEEecchhhcCCCCccccccccccccchhhhhh----hhhhhccCCCCCHHHHH
Confidence 99987541 22233334446777 46699988 43445677777665544322 00111111223555555
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhc-----CCCee----------eEeecceEEEEEEeecCCccchhHHH
Q psy14484 317 AALATLEIFNKDNILQRISQDMKKITKALTSLIT-----HPKII----------NFRQKGMIWAFDVIIEDPEQIETFSK 381 (430)
Q Consensus 317 aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~a~ 381 (430)
.....|+.+. -..++..+++..+.+.|++.+. +|... ...+-|.++.|++. + .+ .+.
T Consensus 188 ll~rgl~Tl~--~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~-~----~~-~~~ 259 (331)
T d1pffa_ 188 LITRGTLTLD--MRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD-G----LE-KAK 259 (331)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS-S----HH-HHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeec-c----HH-HHH
Confidence 4444454332 1234555566666666654321 22211 23456788888876 3 11 145
Q ss_pred HHHHHHH--HCCc--------EEee------------------cCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Q psy14484 382 KFFVAAL--KNEL--------LLRP------------------IGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429 (430)
Q Consensus 382 ~~~~~l~--~~Gv--------~~~~------------------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l~~~~ 429 (430)
+|++.|. ..+. +..| .++.+|+++.. |+.+.+++.|+++|+.+|
T Consensus 260 ~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~~il 331 (331)
T d1pffa_ 260 KVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALDLVL 331 (331)
T ss_dssp HHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHHHhC
Confidence 5666553 1111 1111 13679998775 456666777777777654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.39 E-value=1.4e-12 Score=121.65 Aligned_cols=321 Identities=11% Similarity=-0.022 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHhhccccc--------cCCCCCHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhc
Q psy14484 51 SNSYINKALKNQLNKLEHVM--------LSNLTHKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~~~~~~~~--------~~~~~~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~ 121 (430)
-+++|.+++.+++-.+.... +........++.++.|+++++.+.+ .|+|++|+++++..+.......
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~~~---- 89 (360)
T d1w23a_ 14 LPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLT---- 89 (360)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCC----
T ss_pred CCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhhcc----
Confidence 37999999998764432111 0011124667888999999986555 5777777777777665554432
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
+++++++...+.++......... ..........+..... .++.++... ..
T Consensus 90 ---~~~~v~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~------------~~~~~~~~~----~~ 139 (360)
T d1w23a_ 90 ---KGTIGNYVLTGSWSEKALKEAKL-----------LGETHIAASTKANSYQ------------SIPDFSEFQ----LN 139 (360)
T ss_dssp ---TTCEEEEEECSHHHHHHHHHHHT-----------TSEEEEEEECGGGTSC------------SCCCGGGCC----CC
T ss_pred ---cCcccceeeccchhhhhHHHHHH-----------hhhcceeecccccccc------------chhhhhhcc----cc
Confidence 56667766655544322111110 0011111111110000 122222222 12
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccE
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLS 281 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig 281 (430)
...+.++ +.+|...| +++|.++|+++|+++|+|.+++ ++-. ...++ .+..|+.+++|.++++ .+.+
T Consensus 140 ~~~~~~~----~~tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~g~~--~id~~--~~~vd~~~~~~~k~~~-~~~~ 205 (360)
T d1w23a_ 140 ENDAYLH----ITSNNTIY----GTQYQNFPEINHAPLIADMSSD-ILSR--PLKVN--QFGMIYAGAQKNLGPS-GVTV 205 (360)
T ss_dssp TTEEEEE----EESEETTT----TEECSSCCCCCSSCEEEECTTT-TTSS--CCCGG--GCSEEEEETTTTTSCT-TCEE
T ss_pred cccceeE----ecCCcccc----ceeeeeccccceeeEEeecccc-cccc--ccccc--cccceEEeeccccccC-Ccce
Confidence 2233333 34566777 7788999999999999999997 5322 22333 3456888999987664 2445
Q ss_pred EEEEcHHHHHhhhccCC----ccccc-ccCCCCCCHHHHHHHHHHHHHHhhcCHH----HHHHHHHHHHHHHHHchhcCC
Q psy14484 282 LVMTTDKIYNSIYYKNN----INIFL-HSHSYSGNPLACCAALATLEIFNKDNIL----QRISQDMKKITKALTSLITHP 352 (430)
Q Consensus 282 ~~~~~~~~~~~~~~~~~----~~~~~-~~~t~~~~~~~~~aa~~~l~~~~~~~~~----~~~~~~~~~l~~~l~~l~~~~ 352 (430)
.++.++...+.....+. ..... .............+....+......... .+.+.................
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1w23a_ 206 VIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFY 285 (360)
T ss_dssp EEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSS
T ss_pred eeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccc
Confidence 55554443222111000 00000 0112222222222222233222222222 222222222222222211111
Q ss_pred -Ce--eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 353 -KI--INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 353 -~~--~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
.. ...+.. ..+.|.+. + ......+...|.++||.+..+. +.+|++..-.+|.|+++.+++.|++..+
T Consensus 286 ~~~~~~~~rS~-~vvsf~i~-~-----~~~~~~~~~~l~~~GI~~~~G~~~~ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 286 VGHAEKGSRSL-MNVTFNLR-N-----EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp EESSCGGGBCS-SEEEEECS-S-----HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCChhhcce-eEEEEEcC-C-----CccHHHHHHHHHHCCCeeeeCCCccCcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 11 122222 24555554 2 1124678889999999987652 3589998777899999999999988754
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.39 E-value=4.4e-10 Score=105.02 Aligned_cols=315 Identities=13% Similarity=0.145 Sum_probs=176.7
Q ss_pred HHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCC
Q psy14484 56 NKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS 135 (430)
Q Consensus 56 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~ 135 (430)
++++.+.++..... ..-+...++++.+++.+ +...+++++|||.|+.+|++++.- .+++.|+++.-+
T Consensus 4 ~~~~~~~l~~~~~~----~~G~~~~~fE~~~~~~~--~~~~~~~~~SgT~Al~lal~~l~~-------~~gdeVi~p~~t 70 (374)
T d1o69a_ 4 LKYIEEVFKSNYIA----PLGEFVNRFEQSVKDYS--KSENALALNSATAALHLALRVAGV-------KQDDIVLASSFT 70 (374)
T ss_dssp HHHHHHHHHHTTTS----CTTHHHHHHHHHHHHHH--CCSEEEEESCHHHHHHHHHHHTTC-------CTTCEEEEESSS
T ss_pred HHHHHHHHhcCCcC----CCCHHHHHHHHHHHHHH--CcCeEEEeCCHHHHHHHHHHHcCC-------CCcCEEEeCCcc
Confidence 46777777653211 11256778999999999 667899999999999999987632 256788887777
Q ss_pred CCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCC
Q psy14484 136 YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAG 215 (430)
Q Consensus 136 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~ 215 (430)
|..........+. ..+++....+.... +.+..+ .......++.++++.. ..
T Consensus 71 ~~a~~~~~~~~g~-------------~pv~~Di~~~~~~~-----------~~~~~~-~~~~~~~~~~aii~~~-~~--- 121 (374)
T d1o69a_ 71 FIASVAPICYLKA-------------KPVFIDCDETYNID-----------VDLLKL-AIKECEKKPKALILTH-LY--- 121 (374)
T ss_dssp CGGGTHHHHHTTC-------------EEEEECBCTTSSBC-----------HHHHHH-HHHHCSSCCCEEEEEC-GG---
T ss_pred hHhhHHHHhhccc-------------eeEecccccccccc-----------cccccc-cchhcccccccccccc-cc---
Confidence 7554333333222 22344433222111 333222 2222234566666654 32
Q ss_pred CcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEc-HHHH
Q psy14484 216 GMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-DKIY 290 (430)
Q Consensus 216 G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~-~~~~ 290 (430)
|.... ++++.++|+++|++||.|.+|+ +|-. +.-...|-..|+.+|| |.++.|. -|+++.+ ++++
T Consensus 122 G~~~d----~~~i~~~~~~~~i~vIED~a~a-~g~~---~~~~~~G~~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~ 191 (374)
T d1o69a_ 122 GNAAK----MDEIVEICKENDIVLIEDAAEA-LGSF---YKNKALGTFGEFGVYSYNGNKIITTSG--GGMLIGKNKEKI 191 (374)
T ss_dssp GCCCC----HHHHHHHHHHTTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHH
T ss_pred cchhh----hHHHHHHhhccCcchhhhhhhh-hcce---ECCeecCCCCceEEEeccCcccccccc--ceeehhhhHHHH
Confidence 32333 9999999999999999999998 4321 1111233345777766 7776542 3566664 6666
Q ss_pred Hhhhc---cCCcccc-----cccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchh-cCCCeeeEeecc
Q psy14484 291 NSIYY---KNNINIF-----LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKG 361 (430)
Q Consensus 291 ~~~~~---~~~~~~~-----~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~~~~g 361 (430)
+.+.. .+..... ..+..+-.+.+.++.+..-|+.+ +.+.++-++..+++.+.|.... ..+.........
T Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l--~~~i~~r~~i~~~y~~~L~~~~~~~~~~~~~~s~~ 269 (374)
T d1o69a_ 192 EKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL--EQRVLKKREIYEWYKEFLGEYFSFLDELENSRSNR 269 (374)
T ss_dssp HHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTTEECCCCCTTEECCC
T ss_pred HhhccccccccccccccccccCCccccccchhhhhhHHHHhhh--hhhcchhHHHHHHHHhhccccccccccccCCCCCh
Confidence 54432 1111111 11233444566666666655533 3455566667778888886542 111111111111
Q ss_pred eEEEEEEeecCC----------------ccchhHHHHHHHHHHHCCcEEeec-------------------------CCE
Q psy14484 362 MIWAFDVIIEDP----------------EQIETFSKKFFVAALKNELLLRPI-------------------------GNT 400 (430)
Q Consensus 362 ~~~~~~~~~~~~----------------~~~~~~a~~~~~~l~~~Gv~~~~~-------------------------~~~ 400 (430)
.+..+.+. .+. .........+.+.|.++||-+++. ...
T Consensus 270 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~ 348 (374)
T d1o69a_ 270 WLSTALIN-FDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKG 348 (374)
T ss_dssp SSEEEEES-CCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHE
T ss_pred hheeeeec-cccccccccccccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCE
Confidence 11111111 110 001112367899999999866421 134
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 401 VYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 401 lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
+.+=.+..+|++|++..++.|.+++
T Consensus 349 i~LP~~~~lt~~di~~I~~~I~~~l 373 (374)
T d1o69a_ 349 ICLPSGTAMSKDDVYEISKLILKSI 373 (374)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCHHHHHHHHHHHHHHH
Confidence 5554455679999999999998876
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.36 E-value=5.2e-11 Score=111.34 Aligned_cols=312 Identities=15% Similarity=0.160 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHhhccccccCCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEE
Q psy14484 53 SYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132 (430)
Q Consensus 53 p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~ 132 (430)
.+-.+++.+.++.... ..-+...++++.+++.+ +.+++++++|||.|+.+|++++.... +.++.|++.
T Consensus 12 ~~~~~~v~~~l~~~~~-----~~G~~v~~fE~~~~~~~--g~k~ai~~~Sgt~Al~~al~al~~~~-----~~~~eVi~p 79 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQL-----TQGKRSLLFEEALCEFL--GVKHALVFNSATSALLTLYRNFSEFS-----ADRNEIITT 79 (371)
T ss_dssp HHHHHHHHHHHTSSCC-----SSSHHHHHHHHHHHHHH--TCSEEEEESCHHHHHHHHHHHSSCCC-----TTSCEEEEC
T ss_pred HHHHHHHHHHHcCCCc-----cCCHHHHHHHHHHHHHH--CcCeEEEEecHHHHHHHHHHHhcccC-----CCCCeeecc
Confidence 4556777777754321 12356788999999999 66689999999999999998764321 123468876
Q ss_pred cCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccc
Q psy14484 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQ 212 (430)
Q Consensus 133 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~ 212 (430)
.-+|..........+.. .+++....+... +.+++++.+ ..++.+|++.. ..
T Consensus 80 ~~t~~a~~~ai~~~G~~-------------pv~vDi~~~~~~------------~~~~~~~~~---~~~t~avi~vh-~~ 130 (371)
T d2fnua1 80 PISFVATANMLLESGYT-------------PVFAGIKNDGNI------------DELALEKLI---NERTKAIVSVD-YA 130 (371)
T ss_dssp SSSCTHHHHHHHHTTCE-------------EEECCBCTTSSB------------CGGGSGGGC---CTTEEEEEEEC-GG
T ss_pred cccccccceeeeccCcc-------------cccccccccccc------------cchhhhhhc---cchhhcccccc-cc
Confidence 65555332222222221 123332221111 224445444 46788887655 33
Q ss_pred cCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeee----cccCCCccccEEEEEc-H
Q psy14484 213 CAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS----KGITGGYLPLSLVMTT-D 287 (430)
Q Consensus 213 ~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s----K~l~gG~~~ig~~~~~-~ 287 (430)
|.... ++++.++|+++|+++|.|.+|+ +|-. +.-...|...|+.+|| |.++.| .-|+++.+ +
T Consensus 131 ---G~~~~----~~~i~~~~~~~~i~lIEDaaqa-~Ga~---~~~~~~G~~g~~~~~Sf~~~K~l~~g--~GG~i~t~~~ 197 (371)
T d2fnua1 131 ---GKSVE----VESVQKLCKKHSLSFLSDSSHA-LGSE---YQNKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDS 197 (371)
T ss_dssp ---GCCCC----HHHHHHHHHHHTCEEEEECTTC-TTCE---ETTEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCH
T ss_pred ---ccccc----cccccccccccchhhccchhhc-cCce---eccccCCccccccccccccccccccc--cceEEEeech
Confidence 43444 8899999999999999999998 4321 1112234445666655 777664 24667665 4
Q ss_pred HHHHhhhcc---CCcc-------cccccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHchhcCCCeee-
Q psy14484 288 KIYNSIYYK---NNIN-------IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIIN- 356 (430)
Q Consensus 288 ~~~~~~~~~---~~~~-------~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~- 356 (430)
++.+.+..- +... ....+..+..+.+.++.+...|+.+ +.+.++-++...++.+.|.++ +.+..
T Consensus 198 ~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~~---~~~~~~ 272 (371)
T d2fnua1 198 ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN---PYFTPL 272 (371)
T ss_dssp HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC---SSEEES
T ss_pred hhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhccccccc---cccccc
Confidence 565554331 1100 0011333444566555555555433 344555556666666777654 22111
Q ss_pred -----EeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec--------------------------CCEEEEeC
Q psy14484 357 -----FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI--------------------------GNTVYLMP 405 (430)
Q Consensus 357 -----~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~--------------------------~~~lR~~~ 405 (430)
.......+.+.+. . ..... ...+.+.|.++||-+.+. ...+.+-.
T Consensus 273 ~~~~~~~~~~~~~~i~~~-~-~~~~~--r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~ 348 (371)
T d2fnua1 273 HPLLKDKSSNHLYPILMH-Q-KFFTC--KKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPC 348 (371)
T ss_dssp GGGCSSCCCCSCEEEEEC-G-GGGGG--HHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECC
T ss_pred cccccccccccccccccc-c-cchhH--HHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcC
Confidence 1111112223333 2 11111 257899999999876520 13566655
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy14484 406 PYILNKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 406 ~~~~t~e~i~~~~~~l~~~l~~ 427 (430)
+...|++|++..++.|.+.++.
T Consensus 349 ~~~lt~~di~~I~~~i~~~~~~ 370 (371)
T d2fnua1 349 HANLNLESVQNIAHSVLKTFES 370 (371)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc
Confidence 5567999999999999998875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=1.3e-10 Score=107.82 Aligned_cols=287 Identities=15% Similarity=0.183 Sum_probs=167.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+..++..+.|++.|+++- +.+..+.++||..|+..++. +.. ++++||+....|.+.........
T Consensus 50 sR~gnPT~~~lE~~la~LE--~~~~a~~~sSGmaAi~~~l~-~l~--------~gd~iv~~~~~yg~t~~~~~~~l---- 114 (393)
T d1n8pa_ 50 SRSQNPNRENLERAVAALE--NAQYGLAFSSGSATTATILQ-SLP--------QGSHAVSIGDVYGGTHRYFTKVA---- 114 (393)
T ss_dssp TTTCCHHHHHHHHHHHHHT--TCSEEEEESCHHHHHHHHHH-TSC--------SSCEEEEESSCCHHHHHHHHHTS----
T ss_pred eCCCChHHHHHHHHHHHHh--CCceEEEecCchhHHHhhhh-ccc--------CCCeeeeeeeecccchhhhhhhh----
Confidence 3566788999999999998 55678889999888754443 322 56789998989976533322211
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
.....++.++. + +.++++++++ +++++|++|. +.|+...++. ++.|.++
T Consensus 115 -----~~~gi~~~~~~-~-----------------~~~~~~~~i~---~~t~lv~~Es-psNP~l~v~D----i~~ia~~ 163 (393)
T d1n8pa_ 115 -----NAHGVETSFTN-D-----------------LLNDLPQLIK---ENTKLVWIET-PTNPTLKVTD----IQKVADL 163 (393)
T ss_dssp -----TTTCSCCEEES-S-----------------HHHHHHHHSC---SSEEEEEECS-SCTTTCCCCC----HHHHHHH
T ss_pred -----hcccceeEEee-c-----------------chHHHHHHhh---hhcceeEecC-cchhhhhccc----hhhhhhh
Confidence 11122333332 2 5578888885 6899999999 9999886666 8888888
Q ss_pred HH----hcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEc-HHHHHhhhccCCccccc
Q psy14484 232 CN----NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTT-DKIYNSIYYKNNINIFL 303 (430)
Q Consensus 232 ~~----~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~-~~~~~~~~~~~~~~~~~ 303 (430)
|+ ++|+++|+|..... +..+.......|++ ++.|.++| +-+-.|+++.+ +++.+.+.. .+ ..
T Consensus 164 a~~~~~~~g~~lvVDnT~at------P~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~---~~-~~ 233 (393)
T d1n8pa_ 164 IKKHAAGQDVILVVDNTFLS------PYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF---LQ-NA 233 (393)
T ss_dssp HHHHTTTTTCEEEEECTTTH------HHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HH-HH
T ss_pred hhhhcccCCceEEEecCccC------cccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHH---HH-hh
Confidence 88 78899999997541 12233333446776 56699988 33345555554 456555543 00 01
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHch-h-----cCCCee----------eEe--ecceEEE
Q psy14484 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-I-----THPKII----------NFR--QKGMIWA 365 (430)
Q Consensus 304 ~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l-~-----~~~~~~----------~~~--~~g~~~~ 365 (430)
.+. ..+|..+......|+.+. -..++..+++..+.+.|+.- . .+|... ... +-|.++.
T Consensus 234 ~G~--~~~p~~a~ll~rgl~Tl~--lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~s 309 (393)
T d1n8pa_ 234 IGA--IPSPFDAWLTHRGLKTLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMIS 309 (393)
T ss_dssp HCC--CCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEE
T ss_pred cCC--CCChHHHHHHHhCCcchh--hHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEE
Confidence 222 335554444444443221 12344444555565666421 1 122211 111 3377899
Q ss_pred EEEeecCCccchhHHHHHHHHHH--HCC--------cEEee------------------cCCEEEEeCCCCCCHHHHHHH
Q psy14484 366 FDVIIEDPEQIETFSKKFFVAAL--KNE--------LLLRP------------------IGNTVYLMPPYILNKNEIQHM 417 (430)
Q Consensus 366 ~~~~~~~~~~~~~~a~~~~~~l~--~~G--------v~~~~------------------~~~~lR~~~~~~~t~e~i~~~ 417 (430)
|++. .+ .+.+.+|.+.|. ..+ ++..| .++.+|+++.+. +++.+
T Consensus 310 f~l~-~~----~~~~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r~~~gi~~~liRlSvGlE----~~~DL 380 (393)
T d1n8pa_ 310 FRIK-GG----AEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIE----DTDDL 380 (393)
T ss_dssp EEES-SC----HHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSS----CHHHH
T ss_pred EEEe-CC----HHHHHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHHHhcCCCcCEEEEEeccC----CHHHH
Confidence 9987 42 222456777653 211 12211 025799987754 45556
Q ss_pred HHHHHHHHHH
Q psy14484 418 TSAIFQTFNE 427 (430)
Q Consensus 418 ~~~l~~~l~~ 427 (430)
++.|+++|++
T Consensus 381 i~Dl~~AL~~ 390 (393)
T d1n8pa_ 381 LEDIKQALKQ 390 (393)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=1.6e-12 Score=121.02 Aligned_cols=322 Identities=8% Similarity=-0.074 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHhhccccccC----CCC----CHHHHHHHHHHHhhcCCCCC-eEEEcCCchHHHHHHHHHHHHhhhhcC
Q psy14484 52 NSYINKALKNQLNKLEHVMLS----NLT----HKPVIKLSEKLSSLTQYKLG-HCFYGSDGASAVEVALKMSFHYWYNKG 122 (430)
Q Consensus 52 ~p~v~~a~~~~~~~~~~~~~~----~~~----~~~~~~l~~~l~~~~~~~~~-~v~~~~sgteA~~~al~~~~~~~~~~g 122 (430)
+|+|.+|+.+++.++...+.+ +.. .+..++.++.|+++++.+.+ .|+|++|++++.+.++.....
T Consensus 13 p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~~------ 86 (360)
T d1bjna_ 13 PAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNIL------ 86 (360)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhccc------
Confidence 789999999987654321110 111 25567889999999975444 688888888877766554433
Q ss_pred CCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCe
Q psy14484 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKI 202 (430)
Q Consensus 123 ~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 202 (430)
++++.+++...++.+.......... .........+..... +.+.+++.+. .++
T Consensus 87 -~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~------------~~~~~~~~~~---~~~ 139 (360)
T d1bjna_ 87 -GDKTTADYVDAGYWAASAIKEAKKY-----------CTPNVFDAKVTVDGL------------RAVKPMREWQ---LSD 139 (360)
T ss_dssp -TTCCEEEEEESSHHHHHHHHHHTTT-----------SEEEEEECEEEETTE------------EEECCGGGCC---CCS
T ss_pred -ccccccceecccchhhhhHHHHhhc-----------CccceeeccccCCCc------------chhhhhhhhc---cCC
Confidence 1566666665444433221111110 000111111100000 2222232332 333
Q ss_pred EEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEeccccCCCCcccccccccCCCCCceeeeecccCCCccccEE
Q psy14484 203 AAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 282 (430)
Q Consensus 203 ~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~sK~l~gG~~~ig~ 282 (430)
.++.+.. .++.+|...+.. .+ .++.+++++++|.+++ ++.. .++..++..++.+.+|.++++ .+.+.
T Consensus 140 ~~v~v~~-~~~~t~~~~~~~----~i--~~~~~~~~v~vDa~~~-~~~~----~vd~~~~dv~~~ss~k~~~~~-~~~~~ 206 (360)
T d1bjna_ 140 NAAYMHY-CPNETIDGIAID----ET--PDFGADVVVAADFSST-ILSR----PIDVSRYGVIYAGAQKNIGPA-GLTIV 206 (360)
T ss_dssp SCSCEEE-CSEETTTTEECC----CC--CCCCTTCCEEEECTTT-TTSS----CCCGGGCSEEEEETTTTTSST-TCEEE
T ss_pred ceeEEEe-cccccccCcccc----ce--ecccccceeeeeeecc-ccce----eeeeccceeEEEEcccccccC-CCcee
Confidence 3333334 556777776633 22 4677899999998875 4322 234445555677778998875 35566
Q ss_pred EEEcHHHHHhhhccCCc----c-cccccCCCCCCHHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHchhcC--
Q psy14484 283 VMTTDKIYNSIYYKNNI----N-IFLHSHSYSGNPLACCAALATLEIFNKDNI----LQRISQDMKKITKALTSLITH-- 351 (430)
Q Consensus 283 ~~~~~~~~~~~~~~~~~----~-~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~----~~~~~~~~~~l~~~l~~l~~~-- 351 (430)
++..+...+........ . ...........+.....+............ .++.++....+...+......
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (360)
T d1bjna_ 207 IVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRN 286 (360)
T ss_dssp EEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEC
T ss_pred EeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 66665433221110000 0 000111222233333333322222222222 223333333333333322111
Q ss_pred CCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeecC---CEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q psy14484 352 PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 352 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~~---~~lR~~~~~~~t~e~i~~~~~~l~~~l~ 426 (430)
......+. -..+.|.++ ++.. ...+...|.++||.+..+. +.+|++....+|+|||+.+++.|++..+
T Consensus 287 ~~~~~~rs-~~v~~f~~~-~~~~-----~~~~~~~l~~~Gi~~~~G~~~~g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 287 DVAKRNRS-RMNVPFQLA-DSAL-----DKLFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp CBCGGGBC-SSEEEEEES-SGGG-----HHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCccccc-ceEEEEEcC-Cccc-----HHHHHHHHHHCCCEeecCCCccCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 11112222 245566665 3211 3578888999999887653 3589999999999999999999998654
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=1.1e-10 Score=109.04 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCeEEEcCCchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCcc
Q psy14484 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQS 151 (430)
Q Consensus 72 ~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~ 151 (430)
.+..++....|+++|+++- +.+..+.++||-.|+..++..++. ++++||+....|+|......
T Consensus 53 sR~~nPT~~~LE~~la~LE--~~~~a~~~~SGmaAi~~~~~~l~~--------~gd~il~~~~~Yg~t~~l~~------- 115 (421)
T d2ctza1 53 SRIMNPTVDVLEKRLAALE--GGKAALATASGHAAQFLALTTLAQ--------AGDNIVSTPNLYGGTFNQFK------- 115 (421)
T ss_dssp BTTBCHHHHHHHHHHHHHH--TCSEEEEESSHHHHHHHHHHHHCC--------TTCEEEECSCCCHHHHHHHH-------
T ss_pred cCCCCHHHHHHHHHHHHHh--CCCeEEEecChHHHHHHHHHhhcc--------cccceeecCCcCCchhHHHH-------
Confidence 3567789999999999998 556788999999999988877765 67899999999987533211
Q ss_pred chhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHH
Q psy14484 152 FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l 231 (430)
..+.....+..++...+ ..+..++.+ .+++++|++|. +.|++..++. ++.|.++
T Consensus 116 --~~~~~~gi~~~~~d~~~----------------~~~~~~~~~---~~~t~li~~Et-psNP~l~v~D----i~~i~~i 169 (421)
T d2ctza1 116 --VTLKRLGIEVRFTSREE----------------RPEEFLALT---DEKTRAWWVES-IGNPALNIPD----LEALAQA 169 (421)
T ss_dssp --THHHHTTCEEEECCTTC----------------CHHHHHHHC---CTTEEEEEEES-SCTTTCCCCC----HHHHHHH
T ss_pred --HHHhhccccceeccccc----------------Ccchhcccc---CCCceEEEEcC-CCcceeEecc----hHHHHHH
Confidence 11222333344443221 234444444 36899999999 9999986766 9999999
Q ss_pred HHhcCCEEEEeccccCCCCcccccccccCCCCCcee--eeecccCC-CccccEEEEEcH
Q psy14484 232 CNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL--CLSKGITG-GYLPLSLVMTTD 287 (430)
Q Consensus 232 ~~~~gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~--~~sK~l~g-G~~~ig~~~~~~ 287 (430)
|+++|+++++|...+. +++.+.......|++ +.+|.++| +-.-.|+++.+.
T Consensus 170 A~~~g~~~vvDnT~a~-----tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~ 223 (421)
T d2ctza1 170 AREKGVALIVDNTFGM-----GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGG 223 (421)
T ss_dssp HHHHTCEEEEECGGGG-----GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred HHhcCCceEecccccc-----cceeccccccCCcEEEEechhhccCCCCeEEEEEEcCC
Confidence 9999999999998641 112223334456776 56699988 323345555543
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.27 E-value=9.4e-10 Score=104.47 Aligned_cols=324 Identities=14% Similarity=0.150 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHhhccccccCCCC-C------HHHHHHHHHHHhhcCCCCCeEEEc-CCchHHHHHHHHHHHHhhhhc
Q psy14484 50 HSNSYINKALKNQLNKLEHVMLSNLT-H------KPVIKLSEKLSSLTQYKLGHCFYG-SDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~~~~~~~~~~~-~------~~~~~l~~~l~~~~~~~~~~v~~~-~sgteA~~~al~~~~~~~~~~ 121 (430)
|=+|.+.+.+.+. +.. +.++.+ . ...-+++..+++++ +++-+-.. -.|+.|...|+.+++++++.+
T Consensus 76 hy~P~v~~~~~~~---~Ta-YTPYQPaEiSQG~LQalfEfQtmi~eLT--GMdvaNaS~yDGatA~aeA~~ma~r~~~~~ 149 (471)
T d1wyub1 76 KYNPKLHEEAARL---FAD-LHPYQDPRTAQGALRLMWELGEYLKALT--GMDAITLEPAAGAHGELTGILIIRAYHEDR 149 (471)
T ss_dssp CCCCHHHHHHHHT---TSS-CCTTSCGGGCHHHHHHHHHHHHHHHHHH--TCSEEECCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcchhhhHHHH---Hhc-cCCCCCHHHHHHHHHHHHHHHHHHHHHh--CCCccccccchHHHHHHHHHHHHHHHhhhc
Confidence 4578888877642 222 222332 1 45568888999999 55544333 377777777888888887777
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
+......++...+.+|........... .....++.+..... +.+.++... .++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~------------~~~~~~~~~---~~~ 202 (471)
T d1wyub1 150 GEGRTRRVVLVPDSAHGSNPATASMAG------------YQVREIPSGPEGEV------------DLEALKREL---GPH 202 (471)
T ss_dssp TCTTTCCEEEEETTSCTHHHHHHHHTT------------CEEEEECBCTTSSB------------CHHHHHHHC---STT
T ss_pred ccccccccccCCcccccceeeeeeccc------------ceeecccccccccc------------cchhhhhhh---hcc
Confidence 755555666667777765433222211 12223332221111 566666554 467
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc----CCCCcccccccccCCCCCceeeee--c----
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV----GCGRTGKFFACEHAEIWPDFLCLS--K---- 271 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~----g~g~~g~~~~~~~~~~~~d~~~~s--K---- 271 (430)
++++++.. ++..+..... .+++.+++++++..+++|-+.- ++...|. ...|+++.+ +
T Consensus 203 ~a~v~v~~-p~~~g~~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p~~--------~g~div~vg~~q~~G~ 269 (471)
T d1wyub1 203 VAALMLTN-PNTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARPGD--------MGFDVVHLNLHKTFTV 269 (471)
T ss_dssp EEEEEECS-SCTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH--------HTCSEEECCTTTTTCC
T ss_pred ccceeecc-CCCcccccch----hhhhHHHHHhccccccccccchhhhhhccccCc--------cccccccccccccccc
Confidence 88888876 6666543333 7889999999999888875422 1111111 123444432 3
Q ss_pred ccCCCccccEEEEEcHHHHHhhhcc-------------CCcccccccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHH
Q psy14484 272 GITGGYLPLSLVMTTDKIYNSIYYK-------------NNINIFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRIS 335 (430)
Q Consensus 272 ~l~gG~~~ig~~~~~~~~~~~~~~~-------------~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~ 335 (430)
.+++|+.-+|++.+++++...+-.. .+++.+......+.+.+.+.+|...+..+..++ +.+...
T Consensus 270 P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~ 349 (471)
T d1wyub1 270 PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAV 349 (471)
T ss_dssp CCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445544588999999887654320 011111222223334444444545566555444 446677
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEe----e--cCCEEEEeCCCCC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLR----P--IGNTVYLMPPYIL 409 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~----~--~~~~lR~~~~~~~ 409 (430)
+++.++.++|+.. ..... .....|.-|.+. .... .. +..+.++|+++|+.-. | ..+.+.|++.-.+
T Consensus 350 ~~A~Yla~~L~~~-G~~~~---~~~~ff~EFvv~-~~~~-~~--~~~i~k~L~~~G~~~~~~~~p~~~~~~llv~vTE~~ 421 (471)
T d1wyub1 350 LNARYLKELLKEK-GYRVP---YDGPSMHEFVAQ-PPEG-FR--ALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETE 421 (471)
T ss_dssp HHHHHHHHHHHHT-TCBCS---SCSSCCSCEEEB-CSTT-CC--HHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTS
T ss_pred HHHHHHHHHHhhc-Cceec---cCcceeeEEeec-CCCC-CC--HHHHHHHHHHcCCCCCcccCcCCCCCeEEEecCCCC
Confidence 8899999998653 22211 111222223333 2111 11 3568899999998643 1 2367889999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy14484 410 NKNEIQHMTSAIFQTFNE 427 (430)
Q Consensus 410 t~e~i~~~~~~l~~~l~~ 427 (430)
|++|||.++++|++++++
T Consensus 422 tkedID~lv~aL~~i~~e 439 (471)
T d1wyub1 422 AKETLEAFAEAMGALLKK 439 (471)
T ss_dssp CHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999864
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.22 E-value=5.6e-10 Score=102.05 Aligned_cols=320 Identities=12% Similarity=0.086 Sum_probs=184.1
Q ss_pred CCHHHHHHHHHHHh-hccccc---cCCCCCHHH---HHHH-HHHHhhcCCCCCeEEEc-CCchHHHHHHHHHHHHhhhhc
Q psy14484 51 SNSYINKALKNQLN-KLEHVM---LSNLTHKPV---IKLS-EKLSSLTQYKLGHCFYG-SDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~~-~~~~~~---~~~~~~~~~---~~l~-~~l~~~~~~~~~~v~~~-~sgteA~~~al~~~~~~~~~~ 121 (430)
.+|.|++++...+. ++.... +.+...+.. +.++ +...++++ .+.+-+- .||+.||.+++.++..
T Consensus 35 ~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~--a~~anVqp~SGs~An~av~~all~----- 107 (405)
T d1kl1a_ 35 VSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSGAQANMAVYFTVLE----- 107 (405)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC--CSEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhC--CCcceeeccCchHHHHHHHHHhcC-----
Confidence 46888888877663 232211 112223333 3333 45556774 3444433 4999999999888875
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
++++|+.++...-||..-... ..+.. ...+....++....... |.+++++..+++ +
T Consensus 108 ---pGD~im~l~l~~GGHlshg~~----~~~~g----~~~~~~~y~~d~~~~~I-----------D~d~l~~~a~~~--k 163 (405)
T d1kl1a_ 108 ---HGDTVLGMNLSHGGHLTHGSP----VNFSG----VQYNFVAYGVDPETHVI-----------DYDDVREKARLH--R 163 (405)
T ss_dssp ---TTCEEEEECGGGTCCGGGTCT----TSHHH----HHSEEEEECBCTTTCSB-----------CHHHHHHHHHHH--C
T ss_pred ---CCCEEEEeecccccccccCcc----ccccc----eEEEEEEeccchhcccc-----------cHHHHHHHHHhh--C
Confidence 788999998777666332111 11110 00111222222111112 889999999865 5
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCcc
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYL 278 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~ 278 (430)
+++|++-. +..--..+ +++++++|++.|++|++|-+|. |+-- |..+.. .+. ..|++|.+ |+|.| -
T Consensus 164 PklIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~~GLIa-~g~~~~-P~~-~aDvvt~tThKtlrG--P 231 (405)
T d1kl1a_ 164 PKLIVAAA---SAYPRIID----FAKFREIADEVGAYLMVDMAHIAGLVA-AGLHPN-PVP-YAHFVTTTTHKTLRG--P 231 (405)
T ss_dssp CSEEEECC---SSCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHH-TTSSCC-STT-TCSEEEEESSSTTCC--C
T ss_pred cceEEecc---cccccccC----hHHHHHHHhhhCCEEecchhhHhhhhh-hhhcCC-hhh-hhhheeccccccccC--C
Confidence 66777744 22221222 8999999999999999998876 3311 111111 112 36888877 88887 4
Q ss_pred ccEEEEEcHHHHHhhhccCCcccccccCCCCCCHH-HHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcCCCe
Q psy14484 279 PLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL-ACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITHPKI 354 (430)
Q Consensus 279 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~ 354 (430)
+-|.++.++++.+.+.. ....+..++... ..++...++..... .++.+++.++++.|.+.|.+. ++..+
T Consensus 232 rgg~I~~~~~~~~~i~~------avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv 304 (405)
T d1kl1a_ 232 RGGMILCQEQFAKQIDK------AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-GFTLV 304 (405)
T ss_dssp SCEEEEECHHHHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEG
T ss_pred CCceEEecchhHHHHHh------hhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC-Cceee
Confidence 78899999988777765 112222222222 22222223333222 346677788888888888764 33322
Q ss_pred eeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c-------CCEEEEeCCCC----CCHHHHHHHHH
Q psy14484 355 INFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I-------GNTVYLMPPYI----LNKNEIQHMTS 419 (430)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~-------~~~lR~~~~~~----~t~e~i~~~~~ 419 (430)
..- -...++.+++. +... . .....+.|.+.||.+.. . ...|||..+.. ..++|+.++.+
T Consensus 305 ~gg-Td~H~vlvdl~-~~~~-~---g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~ 378 (405)
T d1kl1a_ 305 SGG-TDNHLLLVDLR-PQQL-T---GKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAA 378 (405)
T ss_dssp GGS-CSSSEEEEECG-GGTC-C---HHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred cCC-Cccceeecccc-ccCC-c---HHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHHhCCCCHHHHHHHHH
Confidence 211 13345666665 3211 1 23445567777998772 1 25799876543 47889999988
Q ss_pred HHHHHHH
Q psy14484 420 AIFQTFN 426 (430)
Q Consensus 420 ~l~~~l~ 426 (430)
.|.++++
T Consensus 379 ~I~~~l~ 385 (405)
T d1kl1a_ 379 IIGLVLK 385 (405)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888774
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=4.4e-10 Score=103.26 Aligned_cols=319 Identities=13% Similarity=0.123 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHHh-hccccc---cCCCCC---HHHHHHH-HHHHhhcCCCCCeEEE-cCCchHHHHHHHHHHHHhhhhc
Q psy14484 51 SNSYINKALKNQLN-KLEHVM---LSNLTH---KPVIKLS-EKLSSLTQYKLGHCFY-GSDGASAVEVALKMSFHYWYNK 121 (430)
Q Consensus 51 ~~p~v~~a~~~~~~-~~~~~~---~~~~~~---~~~~~l~-~~l~~~~~~~~~~v~~-~~sgteA~~~al~~~~~~~~~~ 121 (430)
.+|.|++++...+. ++.... +.+... +..+.++ +...+++++ +.+-+ ..||+.||.+++.++..
T Consensus 38 ~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp~SGs~AN~av~~All~----- 110 (416)
T d1dfoa_ 38 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQPHSGSQANFAVYTALLE----- 110 (416)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--CcceeecccCccHHHHHHHHhcC-----
Confidence 57888888776653 222211 112223 3334444 444567754 44433 36999999999988875
Q ss_pred CCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCC
Q psy14484 122 GFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNK 201 (430)
Q Consensus 122 g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 201 (430)
++++|+..+..--|+..-...++ +.. ...+....+++..... |.+++++..+++ +
T Consensus 111 ---pGD~Il~l~l~~GGHlshg~~~~----~~g----~~~~~~~y~~d~~~~I------------Dyd~l~~~a~~~--k 165 (416)
T d1dfoa_ 111 ---PGDTVLGMNLAHGGHLTHGSPVN----FSG----KLYNIVPYGIDATGHI------------DYADLEKQAKEH--K 165 (416)
T ss_dssp ---TTCEEEEECTTTTCCGGGTCTTS----HHH----HHSEEEEECBCSSSSB------------CHHHHHHHHHHH--C
T ss_pred ---CCCeeeecccccccccccccccc----ccC----ceEEEEecccCCccCc------------cHHHHHHHHHHh--c
Confidence 78999999877666643221111 100 0011111122222222 889999988864 5
Q ss_pred eEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccCCCcc
Q psy14484 202 IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGITGGYL 278 (430)
Q Consensus 202 ~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~gG~~ 278 (430)
+++|++-. +...-..+ +++++++|++.|++|++|.+|. |+. .|..+. +.+. ..|+++.+ |+|.| .
T Consensus 166 PklIi~G~---S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLI-a~g~~~-sP~~-~aDvvt~tThKtlrG--P 233 (416)
T d1dfoa_ 166 PKMIIGGF---SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLV-AAGVYP-NPVP-HAHVVTTTTHKTLAG--P 233 (416)
T ss_dssp CSEEEEEC---SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHH-HHTSSC-CCTT-TSSEEEEESSSTTCC--C
T ss_pred cceEEecc---cccccccC----HHHHHHHHHhcCceEEcchhhhhcce-eccccC-Cccc-ccceeeeehhhcccC--C
Confidence 66677643 33333334 8999999999999999999876 431 111111 1122 35888765 88887 4
Q ss_pred ccEEEEEc---HHHHHhhhccCCcccccccCCCCCC-HHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHchhcC
Q psy14484 279 PLSLVMTT---DKIYNSIYYKNNINIFLHSHSYSGN-PLACCAALATLEIFNK---DNILQRISQDMKKITKALTSLITH 351 (430)
Q Consensus 279 ~ig~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~aa~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~l~~~ 351 (430)
+-|.++.+ +++.+.+.. ....+..++. .-..++...++..... .++.+++.++++.|.+.|.+. ++
T Consensus 234 rggiI~~~~~~~~~~~~i~~------avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~-G~ 306 (416)
T d1dfoa_ 234 RGGLILAKGGSEELYKKLNS------AVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER-GY 306 (416)
T ss_dssp SCEEEEESSCCHHHHHHHHH------HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CceEEEeccchHhHHHHHHh------hhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC-Cc
Confidence 67888876 466555544 1111222222 2222222233443222 346677788888898888765 33
Q ss_pred CCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c-------CCEEEEeCCCC----CCHHHHHH
Q psy14484 352 PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I-------GNTVYLMPPYI----LNKNEIQH 416 (430)
Q Consensus 352 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~-------~~~lR~~~~~~----~t~e~i~~ 416 (430)
+.+..- -...++.+++. +... . .....+.|.+.||.+.. . +..||+..+.. ..++|+.+
T Consensus 307 ~iv~gg-TdnHlvlvdl~-~~~~-~---G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~ 380 (416)
T d1dfoa_ 307 KVVSGG-TDNHLFLVDLV-DKNL-T---GKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKE 380 (416)
T ss_dssp EEGGGS-CSSSEEEEECG-GGTC-C---HHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred ccccCC-CCCceeEEEec-ccCC-C---HHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHH
Confidence 332211 12345566665 3211 1 24566677788998753 1 25799876543 47899999
Q ss_pred HHHHHHHHHH
Q psy14484 417 MTSAIFQTFN 426 (430)
Q Consensus 417 ~~~~l~~~l~ 426 (430)
+.+.|.+++.
T Consensus 381 iA~~I~~~l~ 390 (416)
T d1dfoa_ 381 LAGWMCDVLD 390 (416)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888875
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=8.5e-09 Score=96.54 Aligned_cols=292 Identities=11% Similarity=0.096 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEcC-CchHHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhh
Q psy14484 77 KPVIKLSEKLSSLTQYKLGHCFYGS-DGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEI 155 (430)
Q Consensus 77 ~~~~~l~~~l~~~~~~~~~~v~~~~-sgteA~~~al~~~~~~~~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~ 155 (430)
+...++.++|+++. +++.+-+.+ .|++|...++.++++++ +++++++.. .-|..+.++....
T Consensus 108 q~l~e~q~~l~elt--Gmd~~n~s~~~ga~a~~~~~~~~~~~~------~~~~~~v~~-~~~p~~~~v~~t~-------- 170 (437)
T d1wyua1 108 QATFEYQTMIAELA--GLEIANASMYDGATALAEGVLLALRET------GRMGVLVSQ-GVHPEYRAVLRAY-------- 170 (437)
T ss_dssp HHHHHHHHHHHHHH--TSSEECSCBSSHHHHHHHHHHHHHHHH------TCCEEEEET-TSCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhh--CCCccccCchHHHHHHHHHHHHHHhhh------ccccccccc-ccChHHhhhhhhh--------
Confidence 56678999999999 666665554 78888888888888876 667777644 4444433322111
Q ss_pred hhccCCCeeEeCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhc
Q psy14484 156 YTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNY 235 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~ 235 (430)
......+++.++..+... +.+ +..+++++|+++. ++. -|.+-. ++++.+++++.
T Consensus 171 a~~~g~~vv~v~~~~~~~-------------~~~-------~~~~~~Aavmi~~-Pnt-~G~~ed----~~~i~~~~h~~ 224 (437)
T d1wyua1 171 LEAVGAKLLTLPLEGGRT-------------PLP-------EVGEEVGAVVVQN-PNF-LGALED----LGPFAEAAHGA 224 (437)
T ss_dssp HHHTTCEEEEECCBTTBC-------------CCC-------CCCTTEEEEEEES-SCT-TSBCCC----HHHHHHHHHHT
T ss_pred cccceeeEEeeecccccc-------------hhh-------hhccceeEEEEcc-ccc-cccccc----hHHHHHHhhhc
Confidence 112233444444332111 111 1246889888876 544 454533 89999999999
Q ss_pred CCEEEEeccccCCCCcccccccccCCCCCceeeee-c----ccCCCccccEEEEEcHHHHHhhhcc--C------Ccc--
Q psy14484 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLS-K----GITGGYLPLSLVMTTDKIYNSIYYK--N------NIN-- 300 (430)
Q Consensus 236 gi~li~DEv~~g~g~~g~~~~~~~~~~~~d~~~~s-K----~l~gG~~~ig~~~~~~~~~~~~~~~--~------~~~-- 300 (430)
|.++++|.-...++..-.+ ..+ ..|+++.. | .+++|+-..|.+.+++++...+-.. + ..+
T Consensus 225 G~l~~~~ad~~al~~l~~P---g~~--GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~ 299 (437)
T d1wyua1 225 GALFVAVADPLSLGVLKPP---GAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGF 299 (437)
T ss_dssp TCEEEEECCTTGGGTBCCH---HHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEE
T ss_pred cceEEeeechhhhhccccc---ccc--ccceEeeccceeccccCCCcCccccccccchhhccccccccccccccCCcccc
Confidence 9998887432211111001 111 34777433 4 3444434588899998876554321 0 000
Q ss_pred -------------cccccCCCCCCHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHchhcCCCeeeEeecceEE
Q psy14484 301 -------------IFLHSHSYSGNPLACCAALATLEIFNKDN---ILQRISQDMKKITKALTSLITHPKIINFRQKGMIW 364 (430)
Q Consensus 301 -------------~~~~~~t~~~~~~~~~aa~~~l~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~ 364 (430)
....+...+...+.+..+...+..+..++ ..++...++.++.++|.++ +++........|-
T Consensus 300 ~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~---~g~~~~~~~~~f~ 376 (437)
T d1wyua1 300 ILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV---PGVRPFTPKPFFN 376 (437)
T ss_dssp EECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---TTCEECSCSSBCS
T ss_pred eeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc---CCeeccCCCCeee
Confidence 00111222334444444445555554433 3456677888888888765 2222222222333
Q ss_pred EEEEeecCCccchhHHHHHHHHHHHCCcEEee------cCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Q psy14484 365 AFDVIIEDPEQIETFSKKFFVAALKNELLLRP------IGNTVYLMPPYILNKNEIQHMTSAIFQTF 425 (430)
Q Consensus 365 ~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~------~~~~lR~~~~~~~t~e~i~~~~~~l~~~l 425 (430)
-|.+. -+.. +..+.++|.++|+.... ..+.+.++|.-..|+++||+++++|++++
T Consensus 377 ef~v~-~~~~-----~~~i~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 377 EFALA-LPKD-----PEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EEEEE-CSSC-----HHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EEEEE-CCCC-----HHHHHHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 33333 2111 46799999999986421 24789999999999999999999998864
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.00 E-value=8.3e-08 Score=89.29 Aligned_cols=327 Identities=12% Similarity=0.046 Sum_probs=178.7
Q ss_pred CCCHHHHHHHHHHHhh-cccc---ccCCCCCHHHH---HHH-HHHHhhcCCCCC--eEEE-cCCchHHHHHHHHHHHHhh
Q psy14484 50 HSNSYINKALKNQLNK-LEHV---MLSNLTHKPVI---KLS-EKLSSLTQYKLG--HCFY-GSDGASAVEVALKMSFHYW 118 (430)
Q Consensus 50 ~~~p~v~~a~~~~~~~-~~~~---~~~~~~~~~~~---~l~-~~l~~~~~~~~~--~v~~-~~sgteA~~~al~~~~~~~ 118 (430)
+.+|.|++++...+.+ +... .+.+...+..+ .++ +...++++.+++ .+-+ ..||+.||.+++.++..
T Consensus 42 ~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all~-- 119 (470)
T d1rv3a_ 42 FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE-- 119 (470)
T ss_dssp CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhcC--
Confidence 3578888887765532 2211 11122233333 333 445677754433 3333 34999999999888876
Q ss_pred hhcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHh
Q psy14484 119 YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197 (430)
Q Consensus 119 ~~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~le~~l~~ 197 (430)
++++|+.++..--||..-.......+. .+.....+....++. +.... |.+++++..++
T Consensus 120 ------pgD~im~~~l~~GGHlshg~~~~~~~~---~~~~~~~~~~~y~v~~~~~~I------------Dyd~l~~~a~~ 178 (470)
T d1rv3a_ 120 ------PHGRIMGLDLPDGGHLTHGFMTDKKKI---SATSIFFESMAYKVNPDTGYI------------DYDRLEENARL 178 (470)
T ss_dssp ------TTCEEEEECGGGTCCGGGCCBCSSCBC---SHHHHHSEEEEECBCTTTCSB------------CHHHHHHHHHH
T ss_pred ------CCCeEeeeccccCCcccccccccCCCc---ccccceeEeeEEEEecccCcc------------cHHHHHHHHHh
Confidence 788999987655555322111111000 011111111222222 21222 88999988886
Q ss_pred CCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--cccC
Q psy14484 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGIT 274 (430)
Q Consensus 198 ~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l~ 274 (430)
+ ++++|++-. +..--..+ +++++++|++.|++|++|-+|. |+-- |..+... +. ..|++|.+ |.|.
T Consensus 179 ~--kPklIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA-~g~~~sP-l~-~aDvvt~tTHKtlr 246 (470)
T d1rv3a_ 179 F--HPKLIIAGT---SCYSRNLD----YGRLRKIADENGAYLMADMAHISGLVV-AGVVPSP-FE-HCHVVTTTTHKTLR 246 (470)
T ss_dssp H--CCSEEEECC---SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHH-HTSSCCG-GG-TCSEEEEESSGGGC
T ss_pred h--CcceEeech---hhccccCC----HHHHHHHHhccCCeEEecchhhhhhcc-ccccCCh-hh-eeeeeeeehhhhcc
Confidence 4 566777744 22221233 8999999999999999998876 4311 1111111 11 35888776 8887
Q ss_pred CCccccEEEEEcHH---------------HHHhhhccCCcccccccCCCCCCHHHHHHHH-HHHHHHhhc---CHHHHHH
Q psy14484 275 GGYLPLSLVMTTDK---------------IYNSIYYKNNINIFLHSHSYSGNPLACCAAL-ATLEIFNKD---NILQRIS 335 (430)
Q Consensus 275 gG~~~ig~~~~~~~---------------~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~-~~l~~~~~~---~~~~~~~ 335 (430)
| -+-|.++.+++ +.+.+.. ....+..++.-....||. .++.....+ ++.+++.
T Consensus 247 G--PrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~------avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv 318 (470)
T d1rv3a_ 247 G--CRAGMIFYRRGVRSVDPKTGKEILYNLESLINS------AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVV 318 (470)
T ss_dssp C--CSCEEEEEECSBCC-------CCBCCHHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred C--CcceEEEEccccccccccccchhHHHHHHHHhh------hcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 7 46788888753 4444443 111122222222222232 344444333 3455667
Q ss_pred HHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEee----c------CCEEEEeC
Q psy14484 336 QDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRP----I------GNTVYLMP 405 (430)
Q Consensus 336 ~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~----~------~~~lR~~~ 405 (430)
.+++.|.+.|.+. .++.+..- -...++.+++. +...+ ..+..+.|.+.||.+.. . +..|||..
T Consensus 319 ~NAk~La~~L~~~-G~~v~~gg-TdnHlvlvdl~-~~g~~----g~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT 391 (470)
T d1rv3a_ 319 ANCRALSAALVEL-GYKIVTGG-SDNHLILVDLR-SKGTD----GGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 391 (470)
T ss_dssp HHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEEGG-GGTCC----HHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEEC
T ss_pred HHHHHHHHHHHhC-CceeccCC-CCCceEEEeec-ccCCc----HHHHHHHHHHcCcEECCCcCCCCCCCCCCCeeEecC
Confidence 7777787777654 33322211 12345556654 31111 24566677788998763 1 25799875
Q ss_pred CCC----CCHHHHHHHHHHHHHHHH
Q psy14484 406 PYI----LNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 406 ~~~----~t~e~i~~~~~~l~~~l~ 426 (430)
+.. ..++|+.++.+.|.+++.
T Consensus 392 ~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 392 PALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 543 478898888888888774
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.86 E-value=1.4e-07 Score=87.44 Aligned_cols=324 Identities=13% Similarity=0.083 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHh-hcccccc-------CCCCCHHHHHHHHHHHhhcCCCCCeE---EEcCCchHHHHHHHHHHHHhhh
Q psy14484 51 SNSYINKALKNQLN-KLEHVML-------SNLTHKPVIKLSEKLSSLTQYKLGHC---FYGSDGASAVEVALKMSFHYWY 119 (430)
Q Consensus 51 ~~p~v~~a~~~~~~-~~~~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~~v---~~~~sgteA~~~al~~~~~~~~ 119 (430)
.+|.|++++...+. ++....+ ..+.++...-..++..+++++...+. +=..||+.||.+++.++..
T Consensus 39 ~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all~--- 115 (463)
T d2a7va1 39 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQ--- 115 (463)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC---
T ss_pred CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHcC---
Confidence 56888887776553 2221110 01122333333456667887666532 3345999999999888775
Q ss_pred hcCCCCCcEEEEEcCCCCCcchhhhccCCCccchhhhhccCCCeeEeCCC---CCCCCCCCCChhHHHHHHHHHHHHHHH
Q psy14484 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTP---DSRNINKGNSANEIARCAIFDLEILLK 196 (430)
Q Consensus 120 ~~g~~~~~~vl~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~le~~l~ 196 (430)
++++|+.++..--|+..-...... ....+.. .....++++ .+... |.+++++..+
T Consensus 116 -----pgD~Im~l~l~~GGHlshg~~~~~---~~~~~~g--~~~~~~~Y~~d~~~~~I------------Dyd~~~~~a~ 173 (463)
T d2a7va1 116 -----PHDRIMGLDLPDGGHLTHGYMSDV---KRISATS--IFFESMPYKLNPKTGLI------------DYNQLALTAR 173 (463)
T ss_dssp -----SCEECCC------------------------------------CCBCTTTCSB------------CHHHHHHHHH
T ss_pred -----CCceEEeeccCcCccccccccccc---cccccee--eEeeeeeeeccCCCCcC------------cHHHHHHHHh
Confidence 778888877555444211100000 0000000 001122221 11111 8899998888
Q ss_pred hCCCCeEEEEEccccccCCCcccCChHHHHHHHHHHHhcCCEEEEecccc-CCCCcccccccccCCCCCceeeee--ccc
Q psy14484 197 KNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV-GCGRTGKFFACEHAEIWPDFLCLS--KGI 273 (430)
Q Consensus 197 ~~~~~~~~vi~ep~v~~~~G~~~~~~~~l~~l~~l~~~~gi~li~DEv~~-g~g~~g~~~~~~~~~~~~d~~~~s--K~l 273 (430)
++ ++++|++-. +..--..+ +++++++|++.|++|++|-+|. |+-- |..+... +. ..|++|.+ |.|
T Consensus 174 ~~--kPklIi~G~---S~y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA-~g~~~sP-~~-~aDvvt~tTHKTl 241 (463)
T d2a7va1 174 LF--RPRLIIAGT---SAYARLID----YARMREVCDEVKAHLLADMAHISGLVA-AKVIPSP-FK-HADIVTTTTHKTL 241 (463)
T ss_dssp HH--CCSEEEECC---SSCCSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCG-GG-TCSEEEEESSGGG
T ss_pred hc--CCceEEecc---cccccccC----HHHHHHHhhcccceEEechhhhhHHhh-hhhhcCh-hh-hhhhhhchhhhhh
Confidence 64 566777744 22221223 8999999999999999998876 4421 1111111 12 25888877 888
Q ss_pred CCCccccEEEEEcH---------------HHHHhhhccCCcccccccCCCCCCHHHHHHHH-HHHHHHhh---cCHHHHH
Q psy14484 274 TGGYLPLSLVMTTD---------------KIYNSIYYKNNINIFLHSHSYSGNPLACCAAL-ATLEIFNK---DNILQRI 334 (430)
Q Consensus 274 ~gG~~~ig~~~~~~---------------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~-~~l~~~~~---~~~~~~~ 334 (430)
.| -+-|.+++++ ++.+.+.. ....+..++......||. .++....+ .++.+++
T Consensus 242 rG--PrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~------avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qV 313 (463)
T d2a7va1 242 RG--ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINF------AVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 313 (463)
T ss_dssp CS--CSCEEEEEECSEEEEETTTEEEEECCCHHHHHH------HHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cC--CCceEEEEcccccccccccCccchhHHHHHhhh------hcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHH
Confidence 87 4678888876 33333332 111122222222222222 23433323 3456677
Q ss_pred HHHHHHHHHHHHchhcCCCeeeEeecceEEEEEEeecCCccchhHHHHHHHHHHHCCcEEeec----------CCEEEEe
Q psy14484 335 SQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPI----------GNTVYLM 404 (430)
Q Consensus 335 ~~~~~~l~~~l~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~l~~~Gv~~~~~----------~~~lR~~ 404 (430)
.++++.|.+.|.+. .+..+..- -...++.+++. +... . .....+.|.+.||.+... ...|||.
T Consensus 314 v~NAk~La~~L~~~-G~~vv~gg-TdnHlvlvdl~-~~~~-~---G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiG 386 (463)
T d2a7va1 314 LKNARAMADALLER-GYSLVSGG-TDNHLVLVDLR-PKGL-D---GARAERVLELVSITANKNTCPGDRSAITPGGLRLG 386 (463)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGS-CSSSEEEEECT-TTTC-C---HHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEE
T ss_pred HHHHHHHHHHHHhC-CCeeecCC-CCCceeeeecc-ccCC-C---HHHHHHHHHhccCccCCccCCCCCCCCCCCceEeC
Confidence 77888888888764 33332211 12334556664 3211 1 245677788889987631 2579987
Q ss_pred CCCC----CCHHHHHHHHHHHHHHHH
Q psy14484 405 PPYI----LNKNEIQHMTSAIFQTFN 426 (430)
Q Consensus 405 ~~~~----~t~e~i~~~~~~l~~~l~ 426 (430)
.+.. ..++|+.++.+.|.+++.
T Consensus 387 T~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 387 APALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp SHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6543 467888888888877764
|