Psyllid ID: psy14499
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 262 | 2.2.26 [Sep-21-2011] | |||||||
| Q7A1B9 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| Q6GAW8 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| Q6GID0 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| Q7A6H8 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| Q99VD0 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| Q5HHC7 | 414 | NAD-specific glutamate de | yes | N/A | 0.988 | 0.625 | 0.459 | 1e-63 | |
| P39633 | 424 | Catabolic NAD-specific gl | yes | N/A | 0.984 | 0.608 | 0.427 | 2e-60 | |
| P96110 | 416 | Glutamate dehydrogenase O | yes | N/A | 0.996 | 0.627 | 0.425 | 3e-60 | |
| P54386 | 428 | NADP-specific glutamate d | N/A | N/A | 0.992 | 0.607 | 0.433 | 1e-59 | |
| P50735 | 427 | Cryptic catabolic NAD-spe | no | N/A | 0.984 | 0.604 | 0.435 | 6e-59 |
| >sp|Q7A1B9|DHE2_STAAW NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=gluD PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 1EC: .EC: 4EC: .EC: 1EC: .EC: 2 |
| >sp|Q6GAW8|DHE2_STAAS NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=gluD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q6GID0|DHE2_STAAR NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=gluD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q7A6H8|DHE2_STAAN NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=gluD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain N315) (taxid: 158879) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q99VD0|DHE2_STAAM NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gluD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q5HHC7|DHE2_STAAC NAD-specific glutamate dehydrogenase OS=Staphylococcus aureus (strain COL) GN=gluD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (619), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/261 (45%), Positives = 169/261 (64%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I + A + N+ I +K
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ IQGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
Staphylococcus aureus (strain COL) (taxid: 93062) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|P39633|DHE2_BACSU Catabolic NAD-specific glutamate dehydrogenase RocG OS=Bacillus subtilis (strain 168) GN=rocG PE=1 SV=3 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/262 (42%), Positives = 167/262 (63%), Gaps = 4/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I + K + + N++
Sbjct: 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNAR 223
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
I IQGFGN GS A AGAK++ I D +YNP+G +IP L K +F F
Sbjct: 224 IIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFT 283
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ + ++E CDIL+PAAI +QIT NA+N+ A I++E ANGPTT +A IL ++
Sbjct: 284 D---VITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVEAANGPTTIDATKILNER 340
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
G++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F+ I++ A T KV
Sbjct: 341 GVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKV 400
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA++ G + +A + RG
Sbjct: 401 DMRLAAYMTGIRKSAEASRFRG 422
|
Catabolic GlutDH involved in the utilization of glutamate and other amino acids of the glutamate family. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
| >sp|P96110|DHE3_THEMA Glutamate dehydrogenase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=gdhA PE=1 SV=4 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 169/263 (64%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+W MDTYS +T+ GIVTGKP+ +GGS GR++ATGRGV + + ++ +
Sbjct: 153 MAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 212
Query: 61 ISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+++QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 213 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 272
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I + +E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 273 KGERITN-EELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 331
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 332 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 391
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 392 DMRTAAYILAIDRVAYATKKRGI 414
|
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 3 |
| >sp|P54386|DHE4_SYNY3 NADP-specific glutamate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gdhA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (584), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 167/270 (61%), Gaps = 10/270 (3%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M WMMD YS + P +VTGKP+++GGS GR ATG G F I + K + N+
Sbjct: 152 MGWMMDQYSIIRRKISPAVVTGKPVTMGGSQGRNTATGTGAFYIMQGMLPKFDQYPENTT 211
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL----QKYVTFT---- 112
+++QGFGN G V A ++ G K+VAI D + IYN G +IP + Q++ T
Sbjct: 212 VAVQGFGNAGMVVAECLYQDGYKVVAISDSQGGIYNEQGIDIPAVIDYKQRHRTLAGMYC 271
Query: 113 -RSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE 171
++I D E ++I+++ E ++ D+LIPAA+E+QIT +NA+ V A+ I E ANGPTTT
Sbjct: 272 DQAICDLGENQQISNA-ELLALDVDVLIPAALENQITRDNADQVRARYIFEVANGPTTTA 330
Query: 172 ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
ADDIL KGI + PD++ NAGGV VSYFEWVQN S L W+ +E+N RL + + +W
Sbjct: 331 ADDILASKGIYVFPDILVNAGGVTVSYFEWVQNRSGLYWSAKEVNDRLKEKMVEEAEHVW 390
Query: 232 ELANTKKVSLRTAAFIIGCTRVLQAHKTRG 261
+ V++RTAA+I R+ +A +G
Sbjct: 391 NITQELDVNVRTAAYIHALNRLSEAMDAKG 420
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 |
| >sp|P50735|GUDB_BACSU Cryptic catabolic NAD-specific glutamate dehydrogenase GudB OS=Bacillus subtilis (strain 168) GN=gudB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 169/262 (64%), Gaps = 4/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG +TGKP+ +GGS GR+ AT +GV I + A K ++I ++
Sbjct: 167 MAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGAR 226
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
+ +QGFGN GS A AGAK+V I D +Y+P G +I L + +F K FN
Sbjct: 227 VVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN 286
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ ++E + CDIL+PAAIE+QIT NA+N+ AKI++E ANGPTT E IL D+
Sbjct: 287 D---TITNQELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDR 343
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
I+L PDV+ +AGGV VSYFEWVQN W+E+E+ +L ++ +F+ I+E+AN +++
Sbjct: 344 DILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRI 403
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA+++G ++ +A + RG
Sbjct: 404 DMRLAAYMVGVRKMAEASRFRG 425
|
The wild-type version has little or no activity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 4 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 262 | ||||||
| 300313152 | 430 | glutamate dehydrogenase [Herbaspirillum | 1.0 | 0.609 | 0.614 | 8e-95 | |
| 409407629 | 430 | glutamate dehydrogenase [Herbaspirillum | 1.0 | 0.609 | 0.614 | 3e-94 | |
| 415948934 | 422 | Glutamate dehydrogenase [Herbaspirillum | 1.0 | 0.620 | 0.606 | 5e-94 | |
| 399018371 | 432 | glutamate dehydrogenase/leucine dehydrog | 1.0 | 0.606 | 0.587 | 4e-92 | |
| 398835356 | 430 | glutamate dehydrogenase/leucine dehydrog | 1.0 | 0.609 | 0.599 | 6e-92 | |
| 340789164 | 428 | NAD-specific glutamate dehydrogenase [Co | 1.0 | 0.612 | 0.595 | 2e-91 | |
| 374365042 | 435 | Glu/Leu/Phe/Val dehydrogenase [Cupriavid | 0.992 | 0.597 | 0.572 | 9e-90 | |
| 113866500 | 435 | glutamate dehydrogenase [Ralstonia eutro | 0.992 | 0.597 | 0.572 | 2e-89 | |
| 339324646 | 435 | glutamate dehydrogenase [Cupriavidus nec | 0.992 | 0.597 | 0.572 | 6e-89 | |
| 73540162 | 435 | Glu/Leu/Phe/Val dehydrogenase [Ralstonia | 0.992 | 0.597 | 0.572 | 7e-89 |
| >gi|300313152|ref|YP_003777244.1| glutamate dehydrogenase [Herbaspirillum seropedicae SmR1] gi|300075937|gb|ADJ65336.1| glutamate dehydrogenase (NAD(P)+) protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 352 bits (903), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 204/262 (77%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS + T G+VTGKPIS+GGS GR +ATGRGVF++G + A+K L+I ++K
Sbjct: 167 MAWMMDTYSMNQGSTSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGLDIKDAK 226
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG +AA LF +AG+K+VA+QD TT++N G ++P LQ YV S+K F
Sbjct: 227 VAVQGFGNVGGIAARLFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAKNGSVKGFAG 286
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
++I D +FWS+ CDIL+PAA+E QIT NAN + AKIILEGANGPTT ADDILRDKG
Sbjct: 287 ADEITDRAQFWSVDCDILVPAALEQQITEANANQIKAKIILEGANGPTTPAADDILRDKG 346
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA+ KKVS
Sbjct: 347 VLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLADEKKVS 406
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 407 LRTAAFIVACTRVLQAREMRGL 428
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409407629|ref|ZP_11256080.1| glutamate dehydrogenase [Herbaspirillum sp. GW103] gi|386433380|gb|EIJ46206.1| glutamate dehydrogenase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 161/262 (61%), Positives = 202/262 (77%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS + T G+VTGKPIS+GGS GR +ATGRGVF++G + A K ++I ++K
Sbjct: 167 MAWMMDTYSMNQGSTSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAVKRGMDIKDAK 226
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG +AA LF +AGAK+VA+QD TT++N G ++P LQ YV S+K F
Sbjct: 227 VAVQGFGNVGGIAARLFAEAGAKVVAVQDHVTTVFNAAGLDVPALQAYVASNGSVKGFPG 286
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
++I D +FWS+ CDIL+PAA+E QIT NAN + AKIILEGANGPTT ADDILRDKG
Sbjct: 287 ADEITDRAQFWSVDCDILVPAALEQQITEANANQIKAKIILEGANGPTTPAADDILRDKG 346
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA KKVS
Sbjct: 347 VLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKKVS 406
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 407 LRTAAFIVACTRVLQAREMRGL 428
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415948934|ref|ZP_11556803.1| Glutamate dehydrogenase [Herbaspirillum frisingense GSF30] gi|407757827|gb|EKF67743.1| Glutamate dehydrogenase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 159/262 (60%), Positives = 203/262 (77%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS + T G+VTGKPIS+GGS GR +ATGRGVF++G + A+K ++I ++K
Sbjct: 159 MAWMMDTYSMNQGSTSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRGMDIKDAK 218
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG +AA LF +AG+K+VA+QD TT++N G ++P LQ YV S+K F
Sbjct: 219 VAVQGFGNVGGIAARLFAEAGSKVVAVQDHVTTVFNAGGLDVPALQAYVAKNGSVKGFEG 278
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
++I D +FWS+ CDIL+PAA+E QIT NAN++ AKIILEGANGPTT ADDILRDKG
Sbjct: 279 ADEIADRAQFWSVDCDILVPAALEQQITEANANHIKAKIILEGANGPTTPAADDILRDKG 338
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA K VS
Sbjct: 339 VLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVS 398
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 399 LRTAAFIVACTRVLQAREMRGL 420
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399018371|ref|ZP_10720551.1| glutamate dehydrogenase/leucine dehydrogenase [Herbaspirillum sp. CF444] gi|398101616|gb|EJL91828.1| glutamate dehydrogenase/leucine dehydrogenase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 154/262 (58%), Positives = 202/262 (77%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS + T G+VTGKPIS+GGS GR +ATGRGVF++G + A+K +L+I +++
Sbjct: 169 MAWMMDTYSMNQGSTASGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRHLDIKDAR 228
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG +AA LF +AGAK+VA+QD TT+ +G ++P L YV S+ F
Sbjct: 229 VAVQGFGNVGGIAARLFAEAGAKVVAVQDHITTVVRASGLDVPALHAYVAQHGSVAGFPG 288
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+++ D +FW+ CDIL+PAA+E QIT+NNA+++ AKIILEGANGPT+ ADDIL DKG
Sbjct: 289 ADEVKDRAQFWATDCDILVPAALEQQITVNNASSIRAKIILEGANGPTSPAADDILADKG 348
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA KKVS
Sbjct: 349 VLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKKVS 408
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 409 LRTAAFIVACTRVLQAREMRGL 430
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398835356|ref|ZP_10592719.1| glutamate dehydrogenase/leucine dehydrogenase [Herbaspirillum sp. YR522] gi|398216346|gb|EJN02894.1| glutamate dehydrogenase/leucine dehydrogenase [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 343 bits (879), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 157/262 (59%), Positives = 198/262 (75%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T G+VTGKPIS+GGS GR +ATGRGVF++G + A+K NL I +++
Sbjct: 167 MAWMMDTYSMNHGSTSSGVVTGKPISLGGSLGRHEATGRGVFVVGCEAAAKRNLEIKDAR 226
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG +AA LF +AGA++VA+QD TT++N G ++ LQ YV S+K F
Sbjct: 227 VAVQGFGNVGGIAARLFSEAGARVVAVQDHITTVFNAGGLDVAALQTYVAQNGSVKGFAG 286
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
++I D +FWS+ CDIL+PAA+E QIT NA + AKIILEGANGPTT ADDIL DKG
Sbjct: 287 ADEITDRAQFWSVDCDILVPAALEQQITEANAGQIKAKIILEGANGPTTPAADDILHDKG 346
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA K VS
Sbjct: 347 VLIVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFAAVWQLAEEKNVS 406
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 407 LRTAAFIVACTRVLQAREMRGL 428
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789164|ref|YP_004754629.1| NAD-specific glutamate dehydrogenase [Collimonas fungivorans Ter331] gi|48428786|gb|AAT42434.1| glutamate dehydrogenase [Collimonas fungivorans Ter331] gi|340554431|gb|AEK63806.1| NAD-specific glutamate dehydrogenase [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/262 (59%), Positives = 201/262 (76%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS + T G+VTGKPIS+GGS GR++ATGRGVF++G + A K L+I +K
Sbjct: 165 MAWMMDTYSMNQGSTASGVVTGKPISLGGSLGRREATGRGVFVVGCEAAVKRGLDIHGAK 224
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
I++QGFGNVG +AA LF +AGAK+VA+QD +T+ +G ++ LQ +V T S+ F
Sbjct: 225 IAVQGFGNVGGIAARLFSEAGAKVVAVQDHISTVVRSSGLDVAALQAHVNETGSVAGFKG 284
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
GE+I+D +FW++ CDIL+PAA+E QIT+ NA + AKIILEGANGPT+ ADDIL +KG
Sbjct: 285 GEEISDRAQFWAVDCDILVPAALEQQITVENAPTIRAKIILEGANGPTSPAADDILHEKG 344
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ S+ WTE EINLRL I+ AF A+W+LA KKVS
Sbjct: 345 VLVVPDVIANAGGVTVSYFEWVQDFSSFFWTEDEINLRLTRIMREAFTAVWQLAEEKKVS 404
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTRVLQA + RGL
Sbjct: 405 LRTAAFIVACTRVLQAREMRGL 426
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|374365042|ref|ZP_09623138.1| Glu/Leu/Phe/Val dehydrogenase [Cupriavidus basilensis OR16] gi|373103414|gb|EHP44439.1| Glu/Leu/Phe/Val dehydrogenase [Cupriavidus basilensis OR16] | Back alignment and taxonomy information |
|---|
Score = 335 bits (860), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 206/262 (78%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T G+VTGKPIS+GGS GR++ATGRGVF++GS+ A + L I ++
Sbjct: 174 MAWMMDTYSMNSGSTATGVVTGKPISLGGSLGRREATGRGVFVVGSEAARNLGLEIRGAR 233
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG+VAA LF +AGAK+VA+QD +T +YNP G ++P + +Y + + +I+ F +
Sbjct: 234 VAVQGFGNVGAVAAKLFHEAGAKVVAVQDHRTALYNPAGLDVPAMMEYASHSGTIEGF-Q 292
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
GE I+ +++FW + C+ILIPAA+E QIT NA ++ A++++EGANGPTT EADDILR++
Sbjct: 293 GETIS-AEQFWHVDCEILIPAALEGQITAQNAPHIKARMVIEGANGPTTPEADDILRERN 351
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I++APDVI NAGGV VSYFEWVQ+ S+ WTE+EIN RL I+ AF AIW++A KV+
Sbjct: 352 ILVAPDVIANAGGVTVSYFEWVQDFSSFFWTEEEINQRLVRIMQEAFRAIWQVAQDNKVT 411
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTR+LQA + RGL
Sbjct: 412 LRTAAFIVACTRILQAREMRGL 433
|
Source: Cupriavidus basilensis OR16 Species: Cupriavidus basilensis Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|113866500|ref|YP_724989.1| glutamate dehydrogenase [Ralstonia eutropha H16] gi|113525276|emb|CAJ91621.1| glutamate dehydrogenase [Ralstonia eutropha H16] | Back alignment and taxonomy information |
|---|
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 204/262 (77%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T G+VTGKPIS+GGS GR +ATGRGVF++GS+ A I L I ++
Sbjct: 174 MAWMMDTYSMNSGSTATGVVTGKPISLGGSLGRHEATGRGVFVVGSEAARNIGLEIKGAR 233
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG+VAA LF +AGAK+VA+QD +TT+++P G ++P + +Y + + +I+ F
Sbjct: 234 VAVQGFGNVGAVAAKLFHEAGAKVVAVQDHRTTLFDPAGLDVPAMMEYASHSGTIEGFR- 292
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
GE + +++FW + CDILIPAA+E QIT+ NA +TAK+++EGANGPTT +ADDILR++
Sbjct: 293 GEVLR-TEQFWEVDCDILIPAALEGQITVQNAPKITAKLVIEGANGPTTPQADDILRERN 351
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I++ PDVI NAGGV VSYFEWVQ+ S+ WTE+EIN RL I+ AF AIW++A KV+
Sbjct: 352 ILVCPDVIANAGGVTVSYFEWVQDFSSFFWTEEEINQRLVRIMQEAFRAIWQVAQDNKVT 411
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTR+LQA + RGL
Sbjct: 412 LRTAAFIVACTRILQAREMRGL 433
|
Source: Ralstonia eutropha H16 Species: Cupriavidus necator Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|339324646|ref|YP_004684339.1| glutamate dehydrogenase [Cupriavidus necator N-1] gi|338164803|gb|AEI75858.1| glutamate dehydrogenase GdhA [Cupriavidus necator N-1] | Back alignment and taxonomy information |
|---|
Score = 333 bits (853), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 202/262 (77%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T G+VTGKPIS+GGS GR +ATGRGVF++GS+ A I L I ++
Sbjct: 174 MAWMMDTYSMNSGSTATGVVTGKPISLGGSLGRHEATGRGVFVVGSEAARNIGLEIKGAR 233
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG+VAA LF +AGAK+VA+QD +TT+++P G ++P + +Y + + +I+ F
Sbjct: 234 VAVQGFGNVGAVAAKLFHEAGAKVVAVQDHRTTLFDPAGLDVPAMMEYASHSGTIEGFR- 292
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
GE + + +FW + CDILIPAA+E QIT NA + A++++EGANGPTT EADDILR++
Sbjct: 293 GEVLR-TAQFWEVDCDILIPAALEGQITAENAPQIKARLVIEGANGPTTPEADDILRERN 351
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I++APDVI NAGGV VSYFEWVQ+ S+ WTE+EIN RL I+ AF AIW++A KV+
Sbjct: 352 ILVAPDVIANAGGVTVSYFEWVQDFSSFFWTEEEINQRLVRIMQEAFRAIWQVAQDNKVT 411
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTR+LQA + RGL
Sbjct: 412 LRTAAFIVACTRILQAREMRGL 433
|
Source: Cupriavidus necator N-1 Species: Cupriavidus necator Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|73540162|ref|YP_294682.1| Glu/Leu/Phe/Val dehydrogenase [Ralstonia eutropha JMP134] gi|72117575|gb|AAZ59838.1| Glu/Leu/Phe/Val dehydrogenase, C terminal:Glu/Leu/Phe/Val dehydrogenase, dimerization region [Ralstonia eutropha JMP134] | Back alignment and taxonomy information |
|---|
Score = 332 bits (852), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 150/262 (57%), Positives = 202/262 (77%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T G+VTGKPIS+GGS GR +ATGRGVF++GS+ A I L I ++
Sbjct: 174 MAWMMDTYSMNSGSTATGVVTGKPISLGGSLGRHEATGRGVFVVGSEAARNIGLEIKGAR 233
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG+VAA LF +AGAK+VA+QD + ++YNP G ++P + +Y + + ++ F +
Sbjct: 234 VAVQGFGNVGAVAAKLFQEAGAKVVAVQDHRVSLYNPAGLDVPAMMEYASHSGTVDGF-Q 292
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I+ S++FW + CDILIPAA+E QIT NA + A++++EGANGPTT EADDILR++
Sbjct: 293 AETIS-SEQFWQVDCDILIPAALEGQITAKNAPQIKARLVIEGANGPTTPEADDILRERN 351
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I++APDVI NAGGV VSYFEWVQ+ S+ WTE+EIN RL I+ AF AIW++A KV+
Sbjct: 352 ILVAPDVIANAGGVTVSYFEWVQDFSSFFWTEEEINERLVRIMQEAFRAIWQVAQDNKVT 411
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAAFI+ CTR+LQA + RGL
Sbjct: 412 LRTAAFIVACTRILQAREMRGL 433
|
Source: Ralstonia eutropha JMP134 Species: Cupriavidus pinatubonensis Genus: Cupriavidus Family: Burkholderiaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 262 | ||||||
| TIGR_CMR|BA_1511 | 428 | BA_1511 "glutamate dehydrogena | 0.984 | 0.602 | 0.454 | 1.7e-57 | |
| UNIPROTKB|Q5HHC7 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|Q6GAW8 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|Q6GID0 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|Q7A1B9 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|Q7A6H8 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|Q99VD0 | 414 | gluD "NAD-specific glutamate d | 0.988 | 0.625 | 0.440 | 2.1e-54 | |
| UNIPROTKB|P50735 | 427 | gudB "Cryptic catabolic NAD-sp | 0.984 | 0.604 | 0.427 | 4.3e-54 | |
| TAIR|locus:2183379 | 411 | GDH2 "glutamate dehydrogenase | 0.988 | 0.630 | 0.432 | 3.8e-53 | |
| UNIPROTKB|P39633 | 424 | rocG "Catabolic NAD-specific g | 0.984 | 0.608 | 0.412 | 1e-52 |
| TIGR_CMR|BA_1511 BA_1511 "glutamate dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 119/262 (45%), Positives = 164/262 (62%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 168 MAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRETATAKGVTICIREAAKKRDIDIKGAR 227
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
QGFGN GS A AGAK++AI D +++PNG +I L + +F K FN
Sbjct: 228 VVVQGFGNAGSFLAKFMHDAGAKVIAISDAYGALHDPNGLDIDYLLDRRDSFGTVTKLFN 287
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
I++ KE + CDIL+PAAIE+QIT NAN++ AKI++E ANGPTT EA IL D+
Sbjct: 288 N--TISN-KELLELDCDILVPAAIENQITEENANDIKAKIVVEAANGPTTLEATKILTDR 344
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI+L PDV+ +AGGV VSYFEWVQN WTE+E+ RL ++ +FD+I+E A +KV
Sbjct: 345 GILLVPDVLASAGGVTVSYFEWVQNNQGYYWTEEEVEQRLEKVMVRSFDSIYETAQVRKV 404
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
++R AA+++G ++ +A + RG
Sbjct: 405 NMRLAAYMVGVRKMAEASRFRG 426
|
|
| UNIPROTKB|Q5HHC7 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus COL (taxid:93062)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|Q6GAW8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MSSA476 (taxid:282459)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|Q6GID0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MRSA252 (taxid:282458)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|Q7A1B9 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|Q7A6H8 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus N315 (taxid:158879)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|Q99VD0 gluD "NAD-specific glutamate dehydrogenase" [Staphylococcus aureus subsp. aureus Mu50 (taxid:158878)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/261 (44%), Positives = 159/261 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKPI +GGS GR ++T GV I
Sbjct: 154 MAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAK 213
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGN GS A + GAKIV I D +++PNG +I L ++ + E
Sbjct: 214 VVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFE 273
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I++ KE + + CDIL+PAAI +QIT +NA+++ A I++E ANGPTT EA IL ++G
Sbjct: 274 -ETISN-KELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERG 331
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I+L PDV+ +AGGV VSYFEWVQN W+E+E+N +L + AFD I+EL+ +K+
Sbjct: 332 ILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKID 391
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
+R AA+IIG R +A + RG
Sbjct: 392 MRLAAYIIGIKRTAEAARYRG 412
|
|
| UNIPROTKB|P50735 gudB "Cryptic catabolic NAD-specific glutamate dehydrogenase GudB" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 112/262 (42%), Positives = 160/262 (61%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 167 MAWMMDEYSRIDEFNSPGFITGKPLVLGGSHGRESATAKGVTICIKEAAKKRGIDIKGAR 226
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
QGFGN GS A AGAK+V I D +Y+P G +I L + +F K FN
Sbjct: 227 VVVQGFGNAGSYLAKFMHDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN 286
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ I + +E + CDIL+PAAIE+QIT NA+N+ AKI++E ANGPTT E IL D+
Sbjct: 287 D--TITN-QELLELDCDILVPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDR 343
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
I+L PDV+ +AGGV VSYFEWVQN W+E+E+ +L ++ +F+ I+E+AN +++
Sbjct: 344 DILLVPDVLASAGGVTVSYFEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRI 403
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA+++G ++ +A + RG
Sbjct: 404 DMRLAAYMVGVRKMAEASRFRG 425
|
|
| TAIR|locus:2183379 GDH2 "glutamate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 113/261 (43%), Positives = 152/261 (58%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+W++D YS ++ P +VTGKPI +GGS GR+ ATGRGV
Sbjct: 150 MAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEYGKSIQGLT 208
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
QGFGNVG+ AA L + G K+VA+ D I NP G +I L K+ T S+ DFN
Sbjct: 209 FVIQGFGNVGTWAAKLIHEKGGKVVAVSDITGAIRNPEGIDINALIKHKDATGSLNDFNG 268
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
G+ +N S E CD+LIP A+ + NA +V AK I+E AN PT +AD+IL KG
Sbjct: 269 GDAMN-SDELLIHECDVLIPCALGGVLNKENAGDVKAKFIVEAANHPTDPDADEILSKKG 327
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+I+ PD+ NAGGV VSYFEWVQN+ +W E+++NL L + AF I + +T +
Sbjct: 328 VIILPDIYANAGGVTVSYFEWVQNIQGFMWEEEKVNLELQKYMTRAFHNIKTMCHTHSCN 387
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
LR AF +G RV +A + RG
Sbjct: 388 LRMGAFTLGVNRVARATQLRG 408
|
|
| UNIPROTKB|P39633 rocG "Catabolic NAD-specific glutamate dehydrogenase RocG" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 108/262 (41%), Positives = 158/262 (60%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGXXXXXXXXXXXXXXX 60
M+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I
Sbjct: 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNAR 223
Query: 61 XXXQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFN 119
QGFGN GS A AGAK++ I D +YNP+G +IP L K +F F
Sbjct: 224 IIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFT 283
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+ + ++E CDIL+PAAI +QIT NA+N+ A I++E ANGPTT +A IL ++
Sbjct: 284 D---VITNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVEAANGPTTIDATKILNER 340
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
G++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F+ I++ A T KV
Sbjct: 341 GVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKV 400
Query: 240 SLRTAAFIIGCTRVLQAHKTRG 261
+R AA++ G + +A + RG
Sbjct: 401 DMRLAAYMTGIRKSAEASRFRG 422
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P96110 | DHE3_THEMA | 1, ., 4, ., 1, ., 3 | 0.4258 | 0.9961 | 0.6274 | yes | N/A |
| Q6GID0 | DHE2_STAAR | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| Q9YC65 | DHE3_AERPE | 1, ., 4, ., 1, ., 3 | 0.4037 | 0.9923 | 0.6220 | yes | N/A |
| P39633 | DHE2_BACSU | 1, ., 4, ., 1, ., 2 | 0.4274 | 0.9847 | 0.6084 | yes | N/A |
| Q7A1B9 | DHE2_STAAW | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| Q5HHC7 | DHE2_STAAC | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| P27346 | DHE2_CLODI | 1, ., 4, ., 1, ., 2 | 0.3984 | 0.9923 | 0.6175 | yes | N/A |
| Q47950 | DHE3_PYRAB | 1, ., 4, ., 1, ., 3 | 0.4377 | 0.9923 | 0.6190 | yes | N/A |
| Q7A6H8 | DHE2_STAAN | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| O59650 | DHE3_PYRKO | 1, ., 4, ., 1, ., 3 | 0.4132 | 0.9732 | 0.6057 | yes | N/A |
| P80319 | DHE3_PYRFU | 1, ., 4, ., 1, ., 3 | 0.4415 | 0.9923 | 0.6190 | yes | N/A |
| P0CL72 | DHE3_PYRHR | 1, ., 4, ., 1, ., 3 | 0.4415 | 0.9923 | 0.6190 | yes | N/A |
| P0CL73 | DHE3_PYRHO | 1, ., 4, ., 1, ., 3 | 0.4415 | 0.9923 | 0.6190 | yes | N/A |
| Q38946 | DHE2_ARATH | 1, ., 4, ., 1, ., 3 | 0.4406 | 0.9885 | 0.6301 | yes | N/A |
| Q6GAW8 | DHE2_STAAS | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| Q99VD0 | DHE2_STAAM | 1, ., 4, ., 1, ., 2 | 0.4597 | 0.9885 | 0.6256 | yes | N/A |
| P80053 | DHE2_SULSO | 1, ., 4, ., 1, ., 3 | 0.3787 | 0.9961 | 0.6214 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 262 | |||
| COG0334 | 411 | COG0334, GdhA, Glutamate dehydrogenase/leucine deh | 1e-106 | |
| cd01076 | 227 | cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain | 1e-102 | |
| PLN02477 | 410 | PLN02477, PLN02477, glutamate dehydrogenase | 2e-96 | |
| pfam00208 | 237 | pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenyl | 4e-95 | |
| cd05211 | 217 | cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding | 4e-55 | |
| PTZ00079 | 454 | PTZ00079, PTZ00079, NADP-specific glutamate dehydr | 8e-41 | |
| smart00839 | 102 | smart00839, ELFV_dehydrog, Glutamate/Leucine/Pheny | 1e-39 | |
| cd05313 | 254 | cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain | 1e-37 | |
| PRK09414 | 445 | PRK09414, PRK09414, glutamate dehydrogenase; Provi | 1e-36 | |
| PRK14031 | 444 | PRK14031, PRK14031, glutamate dehydrogenase; Provi | 6e-29 | |
| PRK14030 | 445 | PRK14030, PRK14030, glutamate dehydrogenase; Provi | 1e-26 | |
| cd01075 | 200 | cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d | 6e-16 | |
| PTZ00324 | 1002 | PTZ00324, PTZ00324, glutamate dehydrogenase 2; Pro | 1e-06 | |
| COG2902 | 1592 | COG2902, COG2902, NAD-specific glutamate dehydroge | 5e-04 |
| >gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = e-106
Identities = 119/262 (45%), Positives = 173/262 (66%), Gaps = 1/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + PG+ TGKP+ +GGS GR +ATG GVF + + ++ ++
Sbjct: 150 MAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGAR 209
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+++QGFGNVG AA + GAK+VA+ D K IY+ +G ++ L + S+ ++
Sbjct: 210 VAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG 269
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E I ++E + CDILIP A+E+ IT +NA+ + AKI++EGANGPTT EAD+IL ++G
Sbjct: 270 AEYI-TNEELLEVDCDILIPCALENVITEDNADQLKAKIVVEGANGPTTPEADEILLERG 328
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
I++ PD++ NAGGVIVSY EWVQN L WTE+E++ +L I+ NAF+A+++ A V
Sbjct: 329 ILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVD 388
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAA+I+ RV A K RG
Sbjct: 389 LRTAAYILAFERVADAMKARGW 410
|
Length = 411 |
| >gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Score = 295 bits (759), Expect = e-102
Identities = 111/228 (48%), Positives = 155/228 (67%), Gaps = 1/228 (0%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87
GGS GR++ATGRGV + K+ + + ++++IQGFGNVGS AA +AGAK+VA+
Sbjct: 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60
Query: 88 QDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQI 147
D TIYNP+G ++P L Y S+ F E+I + +E + CDILIPAA+E+QI
Sbjct: 61 SDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN-EELLELDCDILIPAALENQI 119
Query: 148 TINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSN 207
T +NA+ + AKII+E ANGPTT EAD+IL ++G+++ PD++ NAGGV VSYFEWVQNL
Sbjct: 120 TADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDILANAGGVTVSYFEWVQNLQG 179
Query: 208 LLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQ 255
W E+E+N RL + AF+A+ E A V LRTAA+++ RV +
Sbjct: 180 FYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVAE 227
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227 |
| >gnl|CDD|178095 PLN02477, PLN02477, glutamate dehydrogenase | Back alignment and domain information |
|---|
Score = 288 bits (738), Expect = 2e-96
Identities = 118/261 (45%), Positives = 161/261 (61%), Gaps = 2/261 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+W++D YS ++ P +VTGKPI +GGS GR+ ATGRGV + ++ +I
Sbjct: 150 MAWILDEYSKFHGFS-PAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQT 208
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
IQGFGNVGS AA L + G KIVA+ D + N NG +IP L+K+V +K F
Sbjct: 209 FVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG 268
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
G+ I D + PCD+LIPAA+ I NA +V AK I+E AN PT EAD+ILR KG
Sbjct: 269 GDPI-DPDDILVEPCDVLIPAALGGVINKENAADVKAKFIVEAANHPTDPEADEILRKKG 327
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PD+ N+GGV VSYFEWVQN+ +W E+++N L+ + +AF A+ E+ T S
Sbjct: 328 VVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCS 387
Query: 241 LRTAAFIIGCTRVLQAHKTRG 261
LR AF +G RV +A RG
Sbjct: 388 LRMGAFTLGVNRVARATVLRG 408
|
Length = 410 |
| >gnl|CDD|215789 pfam00208, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 4e-95
Identities = 104/237 (43%), Positives = 143/237 (60%), Gaps = 3/237 (1%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNII-NSKISIQGFGNVGSVAANLFFKAGAKIVA 86
GGS GR +ATG GV + K+ + + +++QGFGNVGS AA + GAK+VA
Sbjct: 1 GGSLGRPEATGYGVVYFVEEALKKLGGDSLEGKTVAVQGFGNVGSYAAEKLLELGAKVVA 60
Query: 87 IQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDF-NEGEKINDSKEFWSIPCDILIPAAIE 144
+ D IY+PNG +I +L + + ++ G + +E W I CDIL+P A +
Sbjct: 61 VSDSSGYIYDPNGIDIEELLELKEEGGGRVVEYAGSGAEYISGEELWEIDCDILVPCATQ 120
Query: 145 DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN 204
++I NA + AK ++EGAN PTT EAD+IL ++GI+ APD NAGGV VSY E VQN
Sbjct: 121 NEINEENAKLIKAKAVVEGANMPTTPEADEILEERGILYAPDKAANAGGVTVSYLEMVQN 180
Query: 205 LSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 261
S L WTE+E++ +L I+ N F+A+ E A + LRTAA I G RV A K RG
Sbjct: 181 SSRLSWTEEEVDEKLEKIMTNIFEAVVETAKEYGIDLRTAANIAGFERVADAMKARG 237
|
Length = 237 |
| >gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 4e-55
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 2/218 (0%)
Query: 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 95
ATG GV + + ++ +++QG GNVG A + G K++A+ D IY
Sbjct: 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIY 60
Query: 96 NPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV 155
+P + V S + + + + DI P A+ + I + NA +
Sbjct: 61 DPGITTEELINYAVALGGS--ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKL 118
Query: 156 TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEI 215
AK++ EGAN PTT EA IL ++GI++APD++ NAGGVIVSYFEWVQNL L W +E+
Sbjct: 119 KAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIVSYFEWVQNLQRLSWDAEEV 178
Query: 216 NLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRV 253
+L ++ + + ++ ++ V++R AA I+ R+
Sbjct: 179 RSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERI 216
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217 |
| >gnl|CDD|185433 PTZ00079, PTZ00079, NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 8e-41
Identities = 80/256 (31%), Positives = 127/256 (49%), Gaps = 12/256 (4%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF 77
G +TGK + GGS R +ATG G+ ++ K+N ++ + + G GNV A
Sbjct: 197 GTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKL 256
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIKDF---NEGEKINDSKEF 130
+ GAK++ + D I+ PNGF KL + +K++ + K K+
Sbjct: 257 LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKP 316
Query: 131 WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAPDV 187
W +PCDI P A +++I + +A + K++ EGAN PTT EA + + G+I P
Sbjct: 317 WEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGK 376
Query: 188 ITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT--KKVSLRTAA 245
NAGGV +S E QN + L WT +E++ +L I+ + F+A + A K L A
Sbjct: 377 AANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSDLVAGA 436
Query: 246 FIIGCTRVLQAHKTRG 261
I G +V + +G
Sbjct: 437 NIAGFLKVADSMIEQG 452
|
Length = 454 |
| >gnl|CDD|214847 smart00839, ELFV_dehydrog, Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-39
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 135 CDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGV 194
CDI IP A+++ I NAN + AKII EGAN P T EADDIL D+G++ APD NAGGV
Sbjct: 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGV 62
Query: 195 IVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237
IVS E +QNL+ T +E+ L+ I+ NA + I+E A
Sbjct: 63 IVSALEMLQNLAR---TAEEVFTDLSEIMRNALEEIFETAQKY 102
|
Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Length = 102 |
| >gnl|CDD|133455 cd05313, NAD_bind_2_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-37
Identities = 85/257 (33%), Positives = 123/257 (47%), Gaps = 20/257 (7%)
Query: 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80
TGK +S GGS R +ATG G+ ++ N + +++I G GNV AA +
Sbjct: 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL 60
Query: 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK-----------DFNEGEKINDSKE 129
GAK+V + D K +Y+P+GF KL + IK K + K+
Sbjct: 61 GAKVVTLSDSKGYVYDPDGFTGEKLA----ELKEIKEVRRGRVSEYAKKYGTAKYFEGKK 116
Query: 130 FWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAPD 186
W +PCDI P A ++++ +A + K + EGAN P T EA ++ R G++ AP
Sbjct: 117 PWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQAGVLFAPG 176
Query: 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT--KKVSLRTA 244
NAGGV VS E QN L WT +E++ +L +I+ N DA E A L
Sbjct: 177 KAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAG 236
Query: 245 AFIIGCTRVLQAHKTRG 261
A I G +V A +G
Sbjct: 237 ANIAGFLKVADAMLAQG 253
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254 |
| >gnl|CDD|181834 PRK09414, PRK09414, glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-36
Identities = 86/254 (33%), Positives = 130/254 (51%), Gaps = 22/254 (8%)
Query: 18 GIVTGKPISIGGSFGRQKATGRG-VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANL 76
G++TGK +S GGS R +ATG G V+ + ++ + ++ + G GNV A
Sbjct: 192 GVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKAR-GDSFEGKRVVVSGSGNVAIYAIE- 249
Query: 77 FFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQ--KYVTFTRSIKDFNE--GEKINDSKE 129
KA GAK+V D +Y+ G ++ KL+ K V R I ++ E G + +
Sbjct: 250 --KAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGR-ISEYAEEFGAEYLEGGS 306
Query: 130 FWSIPCDILIPAAIEDQITINNA-----NNVTAKIILEGANGPTTTEADDILRDKGIILA 184
WS+PCDI +P A ++++ +A N V K + EGAN P+T EA ++ + G++ A
Sbjct: 307 PWSVPCDIALPCATQNELDEEDAKTLIANGV--KAVAEGANMPSTPEAIEVFLEAGVLFA 364
Query: 185 PDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT--KKVSLR 242
P NAGGV S E QN S L WT +E++ RL++I+ N A E A K +
Sbjct: 365 PGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVETAEEYGKPGNYV 424
Query: 243 TAAFIIGCTRVLQA 256
A I G +V A
Sbjct: 425 AGANIAGFVKVADA 438
|
Length = 445 |
| >gnl|CDD|184464 PRK14031, PRK14031, glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-29
Identities = 68/219 (31%), Positives = 112/219 (51%), Gaps = 13/219 (5%)
Query: 18 GIVTGKPISIGGSFGRQKATGRG-VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANL 76
G TGK GGS R +ATG G ++ + + +K ++ + G GNV A
Sbjct: 188 GTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTK-GTDLKGKVCLVSGSGNVAQYTAEK 246
Query: 77 FFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNE--GEKINDSKE 129
+ G K+V + D IY+P+G + KL Y+ ++ I+++ E G K +
Sbjct: 247 VLELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYRGRIREYAEKYGCKYVEGAR 305
Query: 130 FWSIPCDILIPAAIEDQITINNANNVTAKIIL---EGANGPTTTEADDILRDKGIILAPD 186
W DI +P+A ++++ ++A + A ++ EGAN P+T EA + +D I+ AP
Sbjct: 306 PWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPG 365
Query: 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICN 225
NAGGV VS E QN L W+ +E++ +L +I+ N
Sbjct: 366 KAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKN 404
|
Length = 444 |
| >gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-26
Identities = 65/216 (30%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 18 GIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF 77
G +TGK + GGS R +ATG G ++ ++I ++I GFGNV AA
Sbjct: 188 GTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKA 247
Query: 78 FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE--GEKINDSKEF----- 130
+ GAK+V I IY+P+G + K+ + S D EK S F
Sbjct: 248 TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKP 307
Query: 131 WSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDILRDKGIILAPDV 187
W DI +P A ++++ +A+ + + E +N T EA D + AP
Sbjct: 308 WEQKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGK 367
Query: 188 ITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNII 223
NAGGV S E QN +L W+ +E++ +L+ I+
Sbjct: 368 AVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIM 403
|
Length = 445 |
| >gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 6e-16
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 24/163 (14%)
Query: 37 TGRGVFIIGSKIASKINL---NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTT 93
T GVF+ G K A++ L ++ +++QG G VG A + GAK++ ++
Sbjct: 5 TAYGVFL-GMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEA 63
Query: 94 IYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNAN 153
+ R+ + G + +E +S+ D+ P A+ I +
Sbjct: 64 V-----------------ARAAE--LFGATVVAPEEIYSVDADVFAPCALGGVINDDTIP 104
Query: 154 NVTAKIILEGANGPTTTEA-DDILRDKGIILAPDVITNAGGVI 195
+ AK I AN +L ++GI+ APD + NAGG+I
Sbjct: 105 QLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI 147
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200 |
| >gnl|CDD|240359 PTZ00324, PTZ00324, glutamate dehydrogenase 2; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 57/242 (23%), Positives = 90/242 (37%), Gaps = 47/242 (19%)
Query: 1 MSWMMDTYSTKKNYTI-PGIVTGKPISIGG----SFGRQKATGRGVFIIGSKIASKINLN 55
M W ++ K+ Y TGK S+GG ++G + R ++ G I K+ LN
Sbjct: 605 MDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVR-AYVTG--ILEKLGLN 660
Query: 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115
Q G G + +N + K V I D +++P G N +L++
Sbjct: 661 E-EEVTKFQTGGPDGDLGSNELLLSKEKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPA 719
Query: 116 KDFNE---------------------GEKINDSKEFWS-------IPCDILIP-AAIEDQ 146
++F+E G + F + D+ +P
Sbjct: 720 REFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYSDADVFVPCGGRPRS 779
Query: 147 ITINNAN--------NVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 198
+T+ N + KII+EGAN T +A L + G+IL D N GGV S
Sbjct: 780 VTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSS 839
Query: 199 FE 200
E
Sbjct: 840 LE 841
|
Length = 1002 |
| >gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 24/131 (18%)
Query: 87 IQD-DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKE-------------FWS 132
D D + I + G + + K +T + + +K + W+
Sbjct: 1023 WSDYDASKI-SKGGGVVSRSAKAITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWN 1081
Query: 133 IPCDILIPAAIE-DQITINNANN--------VTAKIILEGANGPTTTEADDILRDKGIIL 183
+ A+ E + + AN+ V AK+I EGAN T G +
Sbjct: 1082 GGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRI 1141
Query: 184 APDVITNAGGV 194
D I N+ GV
Sbjct: 1142 NTDAIDNSAGV 1152
|
Length = 1592 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 262 | |||
| PLN02477 | 410 | glutamate dehydrogenase | 100.0 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 100.0 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 100.0 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 100.0 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 100.0 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 100.0 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 100.0 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 100.0 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 100.0 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 100.0 | |
| KOG2250|consensus | 514 | 100.0 | ||
| PTZ00324 | 1002 | glutamate dehydrogenase 2; Provisional | 100.0 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 100.0 | |
| smart00839 | 102 | ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Vali | 99.96 | |
| COG2902 | 1592 | NAD-specific glutamate dehydrogenase [Amino acid t | 99.66 | |
| PF05088 | 1528 | Bac_GDH: Bacterial NAD-glutamate dehydrogenase | 99.56 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 99.51 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 99.48 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 99.35 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 99.07 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 98.88 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.84 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 98.82 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.81 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 98.68 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 98.68 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 98.63 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 98.6 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 98.56 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 98.49 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.48 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 98.48 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 98.48 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 98.41 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 98.4 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.4 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.36 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 98.35 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 98.31 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.22 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.21 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.21 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.2 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.16 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 98.13 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.12 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.1 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.09 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.08 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.06 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.04 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.04 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 98.04 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 98.03 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.96 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.95 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 97.94 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.93 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.92 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.9 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.88 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.88 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.82 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.79 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.79 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.78 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.77 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.75 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.74 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 97.74 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.73 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.73 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.72 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.71 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.7 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.63 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.63 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.62 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.62 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.62 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.61 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.59 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.57 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.55 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.51 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.49 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.49 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 97.49 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 97.47 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.44 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.44 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.43 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 97.41 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.38 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.34 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 97.33 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.32 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 97.32 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 97.28 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.28 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.28 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.27 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.25 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.24 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.22 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.21 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.2 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 97.19 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.17 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.11 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 97.09 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 97.09 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.07 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 97.05 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 97.05 | |
| KOG1370|consensus | 434 | 97.02 | ||
| KOG0068|consensus | 406 | 97.0 | ||
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 96.98 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.96 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.95 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.95 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.93 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.93 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 96.9 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.89 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.86 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.85 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 96.84 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 96.84 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.83 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.82 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.81 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.81 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 96.74 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 96.73 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.73 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.69 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.68 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.67 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.62 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 96.57 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.55 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.54 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.51 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.51 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.48 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 96.48 | |
| KOG0069|consensus | 336 | 96.47 | ||
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 96.47 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.45 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.43 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.42 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.37 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.35 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 96.35 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.35 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 96.35 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.33 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.31 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 96.28 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 96.27 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.27 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.23 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.22 | |
| KOG1257|consensus | 582 | 96.21 | ||
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 96.2 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 96.2 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 96.18 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 96.17 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 96.15 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.14 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.13 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.12 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.12 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.11 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.11 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.1 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.09 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.07 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.05 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 96.02 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.02 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.01 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 95.99 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.99 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 95.98 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.96 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 95.95 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.92 | |
| PLN02712 | 667 | arogenate dehydrogenase | 95.9 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 95.88 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.87 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.87 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.85 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.84 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.84 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.77 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.77 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.75 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.73 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.72 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.72 | |
| KOG0409|consensus | 327 | 95.67 | ||
| PRK04148 | 134 | hypothetical protein; Provisional | 95.67 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.65 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 95.65 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 95.61 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.61 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.59 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.59 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 95.59 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.57 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.56 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 95.51 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 95.46 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 95.46 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.46 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.46 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.42 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 95.42 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.42 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.41 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.39 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.39 | |
| PLN02256 | 304 | arogenate dehydrogenase | 95.39 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.37 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.34 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.34 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.33 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.33 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.32 | |
| KOG2380|consensus | 480 | 95.3 | ||
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 95.29 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.29 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 95.27 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 95.26 | |
| KOG0455|consensus | 364 | 95.22 | ||
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.22 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.21 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.2 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.2 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.2 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.16 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 95.16 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.16 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.16 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 95.14 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.14 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.14 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.13 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 95.08 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.08 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 95.07 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 95.06 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.05 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.05 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.04 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 95.03 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.02 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 94.99 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 94.96 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.91 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 94.85 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 94.84 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.78 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 94.77 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 94.76 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 94.73 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.72 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.71 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.7 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.6 | |
| PLN02712 | 667 | arogenate dehydrogenase | 94.57 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.57 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 94.56 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.56 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.55 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.54 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 94.53 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 94.51 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.51 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 94.46 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 94.39 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 94.36 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.36 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 94.36 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 94.3 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 94.28 | |
| KOG2741|consensus | 351 | 94.27 | ||
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 94.23 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.22 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.14 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 94.14 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.1 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.09 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.09 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 94.05 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 94.02 | |
| KOG2018|consensus | 430 | 94.01 | ||
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.9 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.88 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 93.84 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 93.76 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 93.73 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 93.71 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 93.57 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.55 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 93.52 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 93.5 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 93.45 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 93.45 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 93.41 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 93.34 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 93.23 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 93.21 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 93.19 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 92.92 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 92.69 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 92.68 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 92.68 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 92.62 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.57 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.53 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.44 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 92.42 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 92.41 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 92.39 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.38 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 92.35 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 92.34 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.32 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 92.27 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 92.26 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.19 | |
| KOG2336|consensus | 422 | 92.17 | ||
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 92.1 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 91.92 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 91.76 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 91.54 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 91.53 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 91.4 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 91.26 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 91.22 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 91.18 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.1 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 91.06 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 91.06 | |
| PRK05717 | 255 | oxidoreductase; Validated | 90.97 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 90.83 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.69 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.61 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 90.48 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 90.44 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 90.41 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 90.34 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.33 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 90.21 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 90.04 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 90.02 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 89.96 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.93 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 89.89 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 89.84 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 89.84 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 89.83 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 89.77 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.74 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.67 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 89.65 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.51 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 89.39 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.34 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 89.31 | |
| KOG1207|consensus | 245 | 89.16 | ||
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 89.08 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 89.05 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 89.04 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 89.04 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 89.03 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 88.99 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 88.97 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 88.91 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 88.85 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 88.77 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 88.75 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 88.73 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 88.7 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 88.63 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 88.6 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.6 | |
| KOG0029|consensus | 501 | 88.57 | ||
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 88.55 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 88.52 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 88.52 | |
| KOG1196|consensus | 343 | 88.47 | ||
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 88.36 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 88.36 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 88.34 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 88.33 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.33 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 88.26 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 88.26 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 88.23 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 88.23 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 88.17 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 88.11 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.08 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 88.07 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 88.03 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 87.97 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 87.94 | |
| TIGR03628 | 114 | arch_S11P archaeal ribosomal protein S11P. This mo | 87.92 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 87.9 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 87.88 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 87.85 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 87.81 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 87.8 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 87.79 | |
| PF03853 | 169 | YjeF_N: YjeF-related protein N-terminus; InterPro: | 87.74 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 87.72 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 87.71 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 87.68 | |
| KOG1198|consensus | 347 | 87.59 | ||
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.56 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 87.55 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 87.5 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 87.47 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 87.46 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.43 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 87.37 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 87.36 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 87.35 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 87.33 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 87.25 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 87.24 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 87.23 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 87.22 | |
| PLN02602 | 350 | lactate dehydrogenase | 87.22 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 87.21 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 87.12 | |
| KOG0024|consensus | 354 | 87.0 | ||
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 86.99 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 86.99 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 86.95 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 86.95 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.93 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 86.93 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 86.85 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 86.8 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 86.74 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 86.7 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 86.63 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 86.63 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 86.62 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 86.61 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 86.6 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 86.57 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 86.51 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 86.46 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 86.45 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 86.43 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 86.41 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 86.39 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 86.37 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 86.3 | |
| PRK12833 | 467 | acetyl-CoA carboxylase biotin carboxylase subunit; | 86.28 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.24 | |
| KOG0023|consensus | 360 | 86.22 | ||
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 86.21 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 86.21 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 86.2 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 86.17 | |
| CHL00041 | 116 | rps11 ribosomal protein S11 | 86.16 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 86.13 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 86.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 86.04 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 86.03 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 85.95 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 85.94 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 85.92 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 85.9 | |
| PRK09607 | 132 | rps11p 30S ribosomal protein S11P; Reviewed | 85.9 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 85.9 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 85.81 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 85.81 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 85.8 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 85.78 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 85.78 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 85.74 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 85.72 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 85.69 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 85.66 |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-76 Score=552.71 Aligned_cols=260 Identities=45% Similarity=0.794 Sum_probs=255.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.|++ +++|||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.++
T Consensus 150 M~w~~d~y~~~~g~~-~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~ 228 (410)
T PLN02477 150 MAWILDEYSKFHGFS-PAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK 228 (410)
T ss_pred HHHHHHHHHHhhCCC-CceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc
Confidence 899999999999987 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+|+|++|++|||+|||+++|++++++++++.+|++++.++ +++++..+||||+|||++++||++|+++++||+|
T Consensus 229 GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~-~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~I 307 (410)
T PLN02477 229 GGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPID-PDDILVEPCDVLIPAALGGVINKENAADVKAKFI 307 (410)
T ss_pred CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEec-CccceeccccEEeeccccccCCHhHHHHcCCcEE
Confidence 999999999999999999999999999999999999999888888 8899999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++++.|++++++
T Consensus 308 ~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~ 387 (410)
T PLN02477 308 VEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCS 387 (410)
T ss_pred EeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
||+|||++|++||.++|+.|||
T Consensus 388 ~r~aA~~~a~~rv~~a~~~rG~ 409 (410)
T PLN02477 388 LRMGAFTLGVNRVARATVLRGW 409 (410)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999997
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-75 Score=543.06 Aligned_cols=261 Identities=46% Similarity=0.815 Sum_probs=255.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|||+++.|.+.+|++||||+++|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+.+|+.|++.
T Consensus 150 m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~ 229 (411)
T COG0334 150 MAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL 229 (411)
T ss_pred HHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+++|++|.||||+|||+++|++.+++.+++..|++++.++ .+++|+.+||||+|||++|+||.+|+++++||+|
T Consensus 230 GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~V 308 (411)
T COG0334 230 GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLEVDCDILIPCALENVITEDNADQLKAKIV 308 (411)
T ss_pred CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-ccccccccCcEEcccccccccchhhHHHhhhcEE
Confidence 999999999999999999999999998888888999999999998 8899999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+|+||+++|.+|||+|+||+++|+|||++||+||.||.++++|++|+|.++|+++|.++++.+.+.+++++++
T Consensus 309 ~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~~ 388 (411)
T COG0334 309 VEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGVD 388 (411)
T ss_pred EeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+|+|||++|++||+++|+.|||
T Consensus 389 ~r~aA~~~a~~Rva~Am~~~G~ 410 (411)
T COG0334 389 LRTAAYILAFERVADAMKARGW 410 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999996
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=547.16 Aligned_cols=260 Identities=27% Similarity=0.407 Sum_probs=252.0
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.+++ +++|||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.
T Consensus 172 M~w~~d~y~~~~~~~-~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~ 250 (445)
T PRK14030 172 VGYMFGMYKKLTREF-TGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL 250 (445)
T ss_pred HHHHHHHHHhccCcc-ccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHH---HHHHHHhcCCcc-----CCCCceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPK---LQKYVTFTRSIK-----DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~---l~~~~~~~g~~~-----~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|||++|+||||+|||+++ |++++++++++. .||+++.++ ++++|+.+||||+|||++|+||.+|+
T Consensus 251 GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~~~~~cDVliPcAl~n~I~~~na 329 (445)
T PRK14030 251 GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKPWEQKVDIALPCATQNELNGEDA 329 (445)
T ss_pred CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-CccceeccccEEeeccccccCCHHHH
Confidence 999999999999999999999988 788888888775 778888887 88999999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||+++++|++++|.++|+++|.+++++
T Consensus 330 ~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~ 409 (445)
T PRK14030 330 DKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQ 409 (445)
T ss_pred HHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~~--~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.+++++ +++|+|||++|++||+++|..||+
T Consensus 410 v~~~~~~~~~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 410 CVKYGKEGDGYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999 999999999999999999999996
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-72 Score=499.15 Aligned_cols=241 Identities=34% Similarity=0.568 Sum_probs=229.9
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF 100 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~Gl 100 (262)
||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCC-ccCCC----CceecCCCccccccCceEEeeCCccCcccccchhcc---CceEEEecCCCCCC
Q psy14499 101 NIPKL---QKYVTFTRS-IKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTT 169 (262)
Q Consensus 101 D~~~l---~~~~~~~g~-~~~~~----~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t 169 (262)
|+++| .+++++.++ +.+|+ +++.++ ++++|+.+||||+|||++++||.+|++++ +||+|+|+||+|+|
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~-~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t 159 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFE-GKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCT 159 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeC-CcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCC
Confidence 99988 555665555 45553 567777 88999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHH
Q psy14499 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFI 247 (262)
Q Consensus 170 ~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~--~~~r~aa~~ 247 (262)
|+|+++|++|||+|+||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++++.+++++ ++||+|||+
T Consensus 160 ~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~ 239 (254)
T cd05313 160 AEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKKYGDPPDLVAGANI 239 (254)
T ss_pred HHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHcCC
Q psy14499 248 IGCTRVLQAHKTRGL 262 (262)
Q Consensus 248 ~a~~rv~~a~~~rg~ 262 (262)
+|++||.++|+.||+
T Consensus 240 ~a~~rv~~a~~~rG~ 254 (254)
T cd05313 240 AGFLKVADAMLAQGV 254 (254)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999995
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-72 Score=533.43 Aligned_cols=260 Identities=30% Similarity=0.501 Sum_probs=250.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.++.. |++||||+.+||+.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.
T Consensus 176 M~~~~d~y~~~~~~~~-g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~ 254 (445)
T PRK09414 176 IGYLFGQYKRLTNRFE-GVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQL 254 (445)
T ss_pred HHHHHHHHHhhcCcce-EEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 8999999999998775 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc-CCccCCC---CceecCCCccccccCceEEeeCCccCcccccchhcc-
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT-RSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV- 155 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~-g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~- 155 (262)
|++||+|+|++|++|||+|||+++|+++++++ +++.+|+ +++.++ ++++++.+||||||||++|+||++|+.++
T Consensus 255 GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~-~~~i~~~d~DVliPaAl~n~It~~~a~~i~ 333 (445)
T PRK09414 255 GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLE-GGSPWSVPCDIALPCATQNELDEEDAKTLI 333 (445)
T ss_pred CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecC-CccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence 99999999999999999999999999999876 5788887 445666 78899999999999999999999999999
Q ss_pred --CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy14499 156 --TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWEL 233 (262)
Q Consensus 156 --~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~ 233 (262)
+||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||.++.+|++++|.++|+++|.++++++++.
T Consensus 334 ~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~~~~~~ 413 (445)
T PRK09414 334 ANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHHACVET 413 (445)
T ss_pred HcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 234 ANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 234 a~~~~--~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++++ ++||+|||++|++||.+||+.|||
T Consensus 414 ~~~~~~~~~~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 414 AEEYGKPGNYVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999 999999999999999999999996
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-71 Score=523.19 Aligned_cols=260 Identities=31% Similarity=0.544 Sum_probs=247.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.+++ ++++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.
T Consensus 181 m~~~~~~y~~~~~~~-~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~ 259 (454)
T PTZ00079 181 IGYLFGQYKKLRNNF-EGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL 259 (454)
T ss_pred HHHHHHHHHHHhCCC-CceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHH---HHHHHhc-CCccCCC----CceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKL---QKYVTFT-RSIKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l---~~~~~~~-g~~~~~~----~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|||++|+||||+|||+++| .++++.+ +++.+|+ +++.++ ++++|+.+||||+|||.+|.||.++|
T Consensus 260 GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~~~~~~cDI~iPcA~~n~I~~~~a 338 (454)
T PTZ00079 260 GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKKPWEVPCDIAFPCATQNEINLEDA 338 (454)
T ss_pred CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcCcccCCccEEEeccccccCCHHHH
Confidence 9999999999999999999999887 5566544 7777774 467777 78899999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||.||.++++|++|+|.++|+++|.+++++
T Consensus 339 ~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~ 418 (454)
T PTZ00079 339 KLLIKNGCKLVAEGANMPTTIEATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEA 418 (454)
T ss_pred HHHHHcCCeEEEecCCCCCCHHHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 988 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTK--KVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~--~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.|+++ +.++|++||+.|++||+++|..||+
T Consensus 419 ~~~~a~~~~~~~~~r~~A~i~~~~rva~Am~~~G~ 453 (454)
T PTZ00079 419 CVKYAEKYGGKSDLVAGANIAGFLKVADSMIEQGC 453 (454)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999998 5899999999999999999999996
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-71 Score=521.58 Aligned_cols=260 Identities=28% Similarity=0.453 Sum_probs=247.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.++. +|++||||+.+|||.+|.++|||||+++++++++++|.+|+|+||+||||||||+++|++|.++
T Consensus 172 M~~i~d~y~~~~~~~-~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~ 250 (444)
T PRK14031 172 VGFMFGMYKKLSHEF-TGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL 250 (444)
T ss_pred HHHHHHHHHhhcCCc-ceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 899999999999876 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHH---HHHHh-cCCccCCC---CceecCCCccccccCceEEeeCCccCcccccchh
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTF-TRSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNAN 153 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~---~~~~~-~g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~ 153 (262)
|++||+|+|++|++|||+|||+.++. ++++. ++++.+|+ +++.++ .+++|+.+||||+||+++++||.+|++
T Consensus 251 GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~-~d~~~~~~cDIliPaAl~n~I~~~na~ 329 (444)
T PRK14031 251 GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE-GARPWGEKGDIALPSATQNELNGDDAR 329 (444)
T ss_pred CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC-CcccccCCCcEEeecccccccCHHHHH
Confidence 99999999999999999999999886 44444 56777776 556676 889999999999999999999999999
Q ss_pred ccCce---EEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14499 154 NVTAK---IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAI 230 (262)
Q Consensus 154 ~~~~k---iIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v 230 (262)
+++|+ +|+||||+|+||+|+++|++|||.++||+++|+|||++|||||+||+++++|++++|.++|+++|.++++++
T Consensus 330 ~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~~~~v 409 (444)
T PRK14031 330 QLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNIHEAC 409 (444)
T ss_pred HHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 99876 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 231 WELANTK--KVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 231 ~~~a~~~--~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++.++++ ++++|+|||++|++||+++|+.||+
T Consensus 410 ~~~~~~~~~~~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 410 VQYGTEADGYVNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999988 6999999999999999999999996
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-66 Score=458.14 Aligned_cols=233 Identities=46% Similarity=0.756 Sum_probs=222.3
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 106 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~ 106 (262)
|||++|.++|||||++++++++++++. +++++||+|||||+||+++|++|.+.|+++|+|+|++|++|||+|||+++|.
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 899999999999999999999999987 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-ccCCC-----CceecCCC-ccccccCceEEeeCCccCcccccchh-ccC--ceEEEecCCCCCCHHHHHHH
Q psy14499 107 KYVTFTRS-IKDFN-----EGEKINDS-KEFWSIPCDILIPAAIEDQITINNAN-NVT--AKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 107 ~~~~~~g~-~~~~~-----~~~~~~~~-~~il~~~~DIlipaa~~~~it~e~a~-~~~--~kiIve~AN~p~t~ea~~~l 176 (262)
+++++.+. +..|+ +.+.++ . +++|+.+||||+||+.+++||++|++ .++ ||+|+||||+|+||+++++|
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L 159 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIP-NDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEIL 159 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEEC-HHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEec-cccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHH
Confidence 99999888 98887 456676 4 38999999999999999999999999 998 99999999999999999999
Q ss_pred HHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14499 177 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 256 (262)
Q Consensus 177 ~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a 256 (262)
++|||+|+|||++|+|||++||+||+|++++++|+++++.++++++|.++++++++.|++++++||++||++|++||.++
T Consensus 160 ~~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a 239 (244)
T PF00208_consen 160 RERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAA 239 (244)
T ss_dssp HHTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q psy14499 257 HKTRG 261 (262)
Q Consensus 257 ~~~rg 261 (262)
|+.||
T Consensus 240 ~~~rG 244 (244)
T PF00208_consen 240 MKLRG 244 (244)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 99998
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=436.58 Aligned_cols=226 Identities=49% Similarity=0.860 Sum_probs=221.0
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQK 107 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~ 107 (262)
||+.+|.++|||||++++++++++++.+++++||+|||||+||++++++|.++|++||+|+|++|++|||+|||++++++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
++++++++.+|++++.++ ++++++.+||||+||+++++||++++++++||+|+|+||+|+||+++++|++|||+|+||+
T Consensus 81 ~~~~~g~l~~~~~~~~~~-~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 81 YKKEHGSVLGFPGAERIT-NEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDI 159 (227)
T ss_pred HHHhcCCcccCCCceecC-CccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChH
Confidence 999999999998877777 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 188 ITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 188 ~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
++|+|||++||+||.||+++..|+++++.+++++.|.+++.++++.+++++++||++||.+|++||.
T Consensus 160 ~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 160 LANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred HhcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999986
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-61 Score=418.87 Aligned_cols=217 Identities=34% Similarity=0.615 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+|||||++++++++++++.+|+++||+||||||||+++|++|.++|+++|+|+|++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999 99999999999888888
Q ss_pred cCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
..||..+.++ .+++++.+||||+||+++|+||++++++++||+|+|+||+|+||+++++|++|||+|+||+++|+|||+
T Consensus 80 ~~~~~~~~~~-~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi 158 (217)
T cd05211 80 ARVKVQDYFP-GEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVI 158 (217)
T ss_pred cccCcccccC-cccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeE
Confidence 8887666666 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 196 VSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 196 ~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
+||+||.||.++++|++++|.+++++.|.++++++++.|+++++|||+|||++|++||+
T Consensus 159 ~s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 159 VSYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred eEHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999984
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >KOG2250|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=439.51 Aligned_cols=259 Identities=40% Similarity=0.643 Sum_probs=232.0
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhC--CCCCCCeEEEEcCCHHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKIN--LNIINSKISIQGFGNVGSVAANLFF 78 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g--~~l~~~~v~IqGfG~VG~~~a~~L~ 78 (262)
|+|++|+|+++.|+ +++++||||+.+|||++|.++|||||+++++.+++.++ .+++++||+||||||||++.+++|+
T Consensus 193 m~~if~~Ya~~~g~-~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~ 271 (514)
T KOG2250|consen 193 MGWIFDEYAKTHGH-WKAVVTGKPISLGGSHGRYEATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLS 271 (514)
T ss_pred hhhhHHHHHHhhcc-cceeeeCCCCccCCccCcccccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHH
Confidence 89999999999987 79999999999999999999999999999999999998 5799999999999999999999999
Q ss_pred HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc-------cccccCceEEeeCCccCcccccc
Q psy14499 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK-------EFWSIPCDILIPAAIEDQITINN 151 (262)
Q Consensus 79 ~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~-------~il~~~~DIlipaa~~~~it~e~ 151 (262)
+.|.++|+|+|++|+++||+|||+.+|.+++++++++.+|+++.... .. ..+..+||||+||+.+|.||.+|
T Consensus 272 ~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~-~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~n 350 (514)
T KOG2250|consen 272 EKGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSY-EGYIAGLPPWTLVEKCDILVPCATQNEITGEN 350 (514)
T ss_pred hcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccC-ccccccCcchhhHhhCcEEeecCccCcccHhh
Confidence 99999999999999999999999999999999999999998776443 22 45668999999999999999999
Q ss_pred hhccC---ceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhc-------CCCCCHHHHHHHHHH
Q psy14499 152 ANNVT---AKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS-------NLLWTEQEINLRLNN 221 (262)
Q Consensus 152 a~~~~---~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~-------~~~~~~~~v~~~l~~ 221 (262)
|..+. ||+|+||||+|+||||+++|+++|+.++||..+|+|||++|||||+||++ .+.|+.|.+.+.|..
T Consensus 351 A~~lvak~~~~IvEGAN~ptTpeA~~vlek~gv~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~ 430 (514)
T KOG2250|consen 351 AKALVAKGCKYIVEGANMPTTPEADEVLEKAGVLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLAS 430 (514)
T ss_pred HHHHHhcCCcEEEecCCCCCChhHHHHHHhCCeEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHH
Confidence 99995 55999999999999999999999999999999999999999999999999 578999999999988
Q ss_pred HHHHHHHHH----HHHHhhcC--------CCHHHHHHHHHHHHHHHHHHHcC
Q psy14499 222 IICNAFDAI----WELANTKK--------VSLRTAAFIIGCTRVLQAHKTRG 261 (262)
Q Consensus 222 ~~~~~~~~v----~~~a~~~~--------~~~r~aa~~~a~~rv~~a~~~rg 261 (262)
++....+.. ++.+.+++ .+++..|....+.|++++|..+|
T Consensus 431 v~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~gal~~~~~kva~ai~~~g 482 (514)
T KOG2250|consen 431 VQENLSRKQGKANLEPAAEFKDRIQGTSEKDLVHGALIATFNKVARAITDQG 482 (514)
T ss_pred HHHHHHHhccCcccchHHHhhhhhcCCCchHHhhhhHHHHHHHHHHHHHHHH
Confidence 776666665 54443322 35777777777777777776665
|
|
| >PTZ00324 glutamate dehydrogenase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=412.91 Aligned_cols=247 Identities=27% Similarity=0.345 Sum_probs=225.7
Q ss_pred CchhhhHhhhhcCCcC-CceEecccCCCCccCCCC-ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc--CCHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTI-PGIVTGKPISIGGSFGRQ-KATGRGVFIIGSKIASKINLNIINSKISIQG--FGNVGSVAANL 76 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~-~~~~tGkp~~~GG~~~~~-~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqG--fG~VG~~~a~~ 76 (262)
|+|| |+|++.+|+.. ++++||||..+||+.++. ++||+||+.+++.+++++|+++++.||++|| ||+||++.+++
T Consensus 605 mdwa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~ll 683 (1002)
T PTZ00324 605 MDWA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLL 683 (1002)
T ss_pred HHHH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHH
Confidence 7899 99999999865 999999999999999886 9999999999999999999999999999999 99999999998
Q ss_pred HHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC---------------------CceecC----CCccc-
Q psy14499 77 FFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN---------------------EGEKIN----DSKEF- 130 (262)
Q Consensus 77 L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~---------------------~~~~~~----~~~~i- 130 (262)
+. .++|||+|.+|.+|||+|||.++|.++++.++++.+|+ +++.+. ..+++
T Consensus 684 s~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~ 760 (1002)
T PTZ00324 684 SK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFH 760 (1002)
T ss_pred hC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhc
Confidence 74 79999999999999999999999999999888888552 222221 02223
Q ss_pred --cccCceEEeeCCc-cCcccccch--------hccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHH
Q psy14499 131 --WSIPCDILIPAAI-EDQITINNA--------NNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 131 --l~~~~DIlipaa~-~~~it~e~a--------~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~ 199 (262)
+..+|||||||+. ++.||++|+ .+++||+|+||||+|+||+|+.+|++|||.++||+++|+|||++||+
T Consensus 761 l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~laNsGGV~~S~~ 840 (1002)
T PTZ00324 761 LLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDASANKGGVTSSSL 840 (1002)
T ss_pred cccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcchhcCCCcEeeHH
Confidence 4689999999998 999999999 77899999999999999999999999999999999999999999999
Q ss_pred HHHhhhc------------------CCCCC--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy14499 200 EWVQNLS------------------NLLWT--EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCT 251 (262)
Q Consensus 200 E~~~~~~------------------~~~~~--~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~ 251 (262)
||+|++. +.+|+ .++|.++|+++|...++.+++.+++.++++|++|..++.+
T Consensus 841 Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~lS~~ 912 (1002)
T PTZ00324 841 EVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVLSRK 912 (1002)
T ss_pred HHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 9999998 77899 8999999999999999999999999999999999998754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=311.58 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=178.3
Q ss_pred CChhHHHHHHHHHHHHHHh--CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 34 QKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~--g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+.+|||||+++++++++++ +.+++|++|+|||||+||+.+++.|.+.|++|+ ++| .+.+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D----------~~~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VAD----------INEEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHH
Confidence 5699999999999999997 779999999999999999999999999999999 888 567777777654
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCC-HHHHHHHHHCCCeEecccccc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT-TEADDILRDKGIILAPDVITN 190 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t-~ea~~~l~~rgi~~iPD~~aN 190 (262)
. +.+.++ .++++..+|||++||+.+++||.+++++++|++|+|+||+|+| |+++++|+++||.|+||+++|
T Consensus 71 ~-------g~~~v~-~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~N 142 (200)
T cd01075 71 F-------GATVVA-PEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVN 142 (200)
T ss_pred c-------CCEEEc-chhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeee
Confidence 3 244555 6678878999999999999999999999999999999999999 999999999999999999999
Q ss_pred chhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy14499 191 AGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVL 254 (262)
Q Consensus 191 ~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~ 254 (262)
+|||++||+||+|+. ++++.++++.+ .+.+.++++.|++++++||+|||.+|++||.
T Consensus 143 aGGv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 143 AGGLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred CcCceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 999999999999863 67899999998 6889999999999999999999999999985
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-30 Score=197.94 Aligned_cols=100 Identities=52% Similarity=0.778 Sum_probs=96.0
Q ss_pred ceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHH
Q psy14499 135 CDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQE 214 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~ 214 (262)
||||+|||.+++||++++++++||+|+||||+|+|++++++|++|||+|+|||++|+|||++||+||.|+.++ ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy14499 215 INLRLNNIICNAFDAIWELANTK 237 (262)
Q Consensus 215 v~~~l~~~~~~~~~~v~~~a~~~ 237 (262)
+.+++.+.|.+++.++++.|+++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999763
|
Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. |
| >COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=160.37 Aligned_cols=187 Identities=21% Similarity=0.278 Sum_probs=145.1
Q ss_pred cCCceEecccCCCCccCCC----CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHH--HHHHHCCCEEEEEe
Q psy14499 15 TIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAA--NLFFKAGAKIVAIQ 88 (262)
Q Consensus 15 ~~~~~~tGkp~~~GG~~~~----~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a--~~L~~~g~~vv~V~ 88 (262)
.+.+|+-|+....|||.|. .+.|++|++++++..+|.+|++.....+-++|.|.+..-+- .+|...-.+.+|+.
T Consensus 913 ~~~~fwl~DAFaSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNgMLLS~~irLiAAf 992 (1592)
T COG2902 913 REYGFWLGDAFASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNGMLLSKHIRLIAAF 992 (1592)
T ss_pred HHhCCChhhhhhcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccceeccccceeeEEe
Confidence 4567888898889998764 78999999999999999999999999999999765433322 35666677899999
Q ss_pred CCCceeeCC-CCCCHHHHHH---HHHhcCCccCCC------Cc------------------------eecCCCcc----c
Q psy14499 89 DDKTTIYNP-NGFNIPKLQK---YVTFTRSIKDFN------EG------------------------EKINDSKE----F 130 (262)
Q Consensus 89 D~~G~i~~~-~GlD~~~l~~---~~~~~g~~~~~~------~~------------------------~~~~~~~~----i 130 (262)
|.++..+|| .++|.+.+++ +.-.+.++.+|. ++ +.++ |.+ |
T Consensus 993 DhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K~I~Lspe~~~~lgi~~~~~~-P~elitAI 1071 (1592)
T COG2902 993 DHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAKAITLSPEVIAALGIDKTELA-PNELITAI 1071 (1592)
T ss_pred cCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeeccccCCCHHHHHHhCCCccccC-hHHHHHHH
Confidence 999999999 6788877666 333445566551 11 0111 222 2
Q ss_pred ccc--------CceEEeeCCc-cCcccccchh--------ccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchh
Q psy14499 131 WSI--------PCDILIPAAI-EDQITINNAN--------NVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGG 193 (262)
Q Consensus 131 l~~--------~~DIlipaa~-~~~it~e~a~--------~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GG 193 (262)
|.. ..|.+|+|+. +|.+++++|. +++||+|+||||..+|+.++-.+.++|..+..|++.|+||
T Consensus 1072 LKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaNLgvTQ~gRief~~~Ggr~ntDaidNsaG 1151 (1592)
T COG2902 1072 LKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAIDNSAG 1151 (1592)
T ss_pred HcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeecccccccchhHHHHHHcCCeecchhhcccCC
Confidence 332 3677788987 4777776554 4589999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q psy14499 194 VIVSYFEWV 202 (262)
Q Consensus 194 vi~s~~E~~ 202 (262)
|.||.+|..
T Consensus 1152 Vd~SD~EVn 1160 (1592)
T COG2902 1152 VDCSDHEVN 1160 (1592)
T ss_pred Ccccchhhh
Confidence 999999964
|
|
| >PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=151.31 Aligned_cols=193 Identities=21% Similarity=0.306 Sum_probs=152.6
Q ss_pred HhhhhcCC--cCCceEecccCCCCccCCC----CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHH--HHHH
Q psy14499 7 TYSTKKNY--TIPGIVTGKPISIGGSFGR----QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAA--NLFF 78 (262)
Q Consensus 7 ~y~~~~g~--~~~~~~tGkp~~~GG~~~~----~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a--~~L~ 78 (262)
+||.++.. .+.|||-|.....|||.|+ .+.|++|+|.+++..++.+|+++....|.|+|.|.++.-+. -+|.
T Consensus 841 tfSD~AN~ia~~~gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLl 920 (1528)
T PF05088_consen 841 TFSDIANEIAAEYGFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLL 920 (1528)
T ss_pred hHHHHHHHHHHHcCCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhc
Confidence 45555543 4688999999999999875 68999999999999999999999999999999988876665 4577
Q ss_pred HCCCEEEEEeCCCceeeCCCCCCHHHHH----HHHHh-cCCccCCC------C-------c-----------------ee
Q psy14499 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQ----KYVTF-TRSIKDFN------E-------G-----------------EK 123 (262)
Q Consensus 79 ~~g~~vv~V~D~~G~i~~~~GlD~~~l~----~~~~~-~g~~~~~~------~-------~-----------------~~ 123 (262)
....++||..|+...-.||+- |+..-. ++++. +-+..+|. | + ..
T Consensus 921 S~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKsI~lS~e~r~~lgi~~~~ 999 (1528)
T PF05088_consen 921 SRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKSIPLSPEMRAALGIEKDS 999 (1528)
T ss_pred ccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCCCCCCHHHHHHhCCCCCc
Confidence 788999999999999999984 665321 22221 22444551 1 0 11
Q ss_pred cCCCcc----ccccCceEEeeCCccCcccc---c--------------chhccCceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 124 INDSKE----FWSIPCDILIPAAIEDQITI---N--------------NANNVTAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 124 ~~~~~~----il~~~~DIlipaa~~~~it~---e--------------~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
++ |++ +|.+++|.|+--.++..+-. . |+..++||+|+||+|..+|+.++-.+..+|..
T Consensus 1000 ~t-p~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNLG~TQ~gRiE~a~~GGr 1078 (1528)
T PF05088_consen 1000 LT-PDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNLGLTQRGRIEYALNGGR 1078 (1528)
T ss_pred cC-HHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEecccccccchHHHHHHHHcCCc
Confidence 22 444 46799999999888755532 1 46667999999999999999999999999999
Q ss_pred EeccccccchhhHHHHHHH
Q psy14499 183 LAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 183 ~iPD~~aN~GGvi~s~~E~ 201 (262)
+-.|++-||+||-||-+|.
T Consensus 1079 iNtDaiDNSaGVd~SDhEV 1097 (1528)
T PF05088_consen 1079 INTDAIDNSAGVDCSDHEV 1097 (1528)
T ss_pred cchhhhcccCCCcCccchh
Confidence 9999999999999999994
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-14 Score=129.91 Aligned_cols=173 Identities=19% Similarity=0.260 Sum_probs=118.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH--------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFK--------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~--------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
++|+|+|||+||+.++++|.+ .++++|+|+|++|++++|+|||++++++++++ +.+..++- +.++ .+++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~-~~~~-~~~l 77 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDY-EKIK-FDEI 77 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCC-CcCC-HHHH
Confidence 389999999999999999987 46899999999999999999999999988866 66655421 1122 4566
Q ss_pred cccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH--HHHH
Q psy14499 131 WSIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI--VSYF 199 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi--~s~~ 199 (262)
+..++||+|+|+.++ .+++++..+ +.+.|+-+..+|+. ++..+..+++|+.+. |-++.||-+ ....
T Consensus 78 l~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~--~eatV~~g~Pii~~~ 154 (326)
T PRK06392 78 FEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR--YEATVAGGVPLFSLR 154 (326)
T ss_pred hcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE--Eeeeeeeccchhhhh
Confidence 677999999999864 455555442 55788888778864 555666677888887 556555432 2222
Q ss_pred HHH-hhh-----cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 200 EWV-QNL-----SN-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 200 E~~-~~~-----~~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
... ... .+ +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 155 ~~~~~g~~i~~i~GilnGT~nyIl~~m~~--g~~f~~al~eAq~lG~ 199 (326)
T PRK06392 155 DYSTLPSRIKNFRGIVSSTINYVIRQEAN--GRGFLDVVKIAQKMGI 199 (326)
T ss_pred hhhcccCCEEEEEEEEeChHHHHHhhccC--CCCHHHHHHHHHHcCC
Confidence 211 000 00 00112234555552 4568888899988875
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-14 Score=129.67 Aligned_cols=172 Identities=21% Similarity=0.284 Sum_probs=118.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH--------CC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC---ceec
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK--------AG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE---GEKI 124 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~--------~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~---~~~~ 124 (262)
..+|+|||||+||++++++|.+ .| .+|++|+|++|++|||+|+|++++++++++++.+..|+. ...+
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 4799999999999999999987 45 899999999999999999999999999999888877752 1223
Q ss_pred CCCcccc-ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchh-
Q psy14499 125 NDSKEFW-SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGG- 193 (262)
Q Consensus 125 ~~~~~il-~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GG- 193 (262)
+ .++++ +.++||+|+|+.. +++..+ +.+.||-+..+|++ ++..+.-+++|+.+. |-+|.+|
T Consensus 82 ~-~~ell~~~~~DVvVd~t~~-----~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~--~ea~v~~G 153 (336)
T PRK08374 82 S-PEEIVEEIDADIVVDVTND-----KNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYL--FEATVMAG 153 (336)
T ss_pred C-HHHHHhcCCCCEEEECCCc-----HHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEE--Eecccccc
Confidence 3 56676 5799999999843 344444 45677766666653 455566677898887 5565553
Q ss_pred h--HHHHHHHHhhh-----cC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 194 V--IVSYFEWVQNL-----SN-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 194 v--i~s~~E~~~~~-----~~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+ +..-.+.+... .+ +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 154 iPii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 154 TPIIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred CCchHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 2 22222221100 00 01122335666653 4668899999998875
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=115.59 Aligned_cols=179 Identities=23% Similarity=0.285 Sum_probs=120.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
..+|+|+|||+||+.+++.|.+. ++++++|+|+++.+|+|+|+|++++.+..++.+.+..|++.....+.
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 46899999999999999999764 68999999999999999999999999888877766666533221225
Q ss_pred cccc-ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCC---CHHHHHHHHHCCCeEeccccccchhh---
Q psy14499 128 KEFW-SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPT---TTEADDILRDKGIILAPDVITNAGGV--- 194 (262)
Q Consensus 128 ~~il-~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~---t~ea~~~l~~rgi~~iPD~~aN~GGv--- 194 (262)
++++ +.++||+++|++++.-+.+++..+ +.+.|+-+...|+ .++..+..+++|+.+. |-++.|+-
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~--~ea~v~~glPi 159 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR--YEATVGGAMPI 159 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE--EeeeeeechhH
Confidence 5666 468999999999877665555443 4566776666675 3555666678899886 44444432
Q ss_pred HHHHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 IVSYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 i~s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+....+.+.... + +.-+-.-++.++++. ...+.+++..|++.|.
T Consensus 160 i~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 160 INLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 222222221100 0 001222355555332 3568899999998875
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-10 Score=105.21 Aligned_cols=174 Identities=16% Similarity=0.212 Sum_probs=115.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
.+|+|.|||+||+.++++|.+. ..+|++|+|+++.+++++|+|++.+++.......+..|.. .+.+
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~----~~~~ 78 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIE----HHPE 78 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhc----cChH
Confidence 6899999999999999998763 3789999999999999999999876554322111111110 0122
Q ss_pred ccc--ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH--
Q psy14499 129 EFW--SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI-- 195 (262)
Q Consensus 129 ~il--~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi-- 195 (262)
+++ ..+.||+|+|+.++..+.+++..+ +.+.||.+...+++ +|..+.-+++|+.+. |-++.||-+
T Consensus 79 ~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~--yEasVggGiPi 156 (346)
T PRK06813 79 ERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR--YSGATAAALPT 156 (346)
T ss_pred HHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE--Eeeeeeeccch
Confidence 333 347899999999988888888776 56789998888873 666677788999998 667666432
Q ss_pred HHHHHHHhhhc------C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 196 VSYFEWVQNLS------N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 196 ~s~~E~~~~~~------~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
...+.....-. + +.-+-.-++.++++. ...+.+++..|++.|.
T Consensus 157 I~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~-g~~f~eal~~Aq~lGy 206 (346)
T PRK06813 157 LDIGQFSLAGCHIEKIEGILNGTTNYILTKMNEE-DITFEEALKEAQSKGI 206 (346)
T ss_pred HHHHhhhcccCcEEEEEEEEechHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 22222111000 0 001122244444322 3458888889988875
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-09 Score=98.20 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-------C--CEEEEEeCCCceeeCCC----CCCHHHHHHH---HHhcCCccCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKA-------G--AKIVAIQDDKTTIYNPN----GFNIPKLQKY---VTFTRSIKDFN 119 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~-------g--~~vv~V~D~~G~i~~~~----GlD~~~l~~~---~~~~g~~~~~~ 119 (262)
|+..+|+|+|||+||+.+++.|.+. | .+|++|+|+++.+++++ |+|++.+.+. +++...+..|+
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhh
Confidence 3457899999999999999987652 3 68999999999999965 9998887663 33333343331
Q ss_pred C---c-----------eecCCCcccc-ccCceEEeeCCccCcccccchhcc--CceEEEecCCCCCC--HHHHHHHHHCC
Q psy14499 120 E---G-----------EKINDSKEFW-SIPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTT--TEADDILRDKG 180 (262)
Q Consensus 120 ~---~-----------~~~~~~~~il-~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t--~ea~~~l~~rg 180 (262)
. . +.++ ..+.+ ..+.+|+|+|+.+. .+.+...+. +.+.||.+...+++ .+--+.|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ViVD~T~s~-~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~~~ 158 (377)
T PLN02700 81 ALAGGCQVFNNSELSRKVID-IATLLGKSTGLVVVDCSASM-ETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAAHP 158 (377)
T ss_pred hccccccccccccccchhhh-HHHHhhccCCCEEEECCCCh-HHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHHcC
Confidence 1 0 0011 12223 45679999999863 223333332 67789988888874 33346667789
Q ss_pred CeEeccccccchhh---HHHHHHHHhh---hc---C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 181 IILAPDVITNAGGV---IVSYFEWVQN---LS---N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 181 i~~iPD~~aN~GGv---i~s~~E~~~~---~~---~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+.+. |-++.||- |..-.+.+.. .. + +.-+-.-++.++++ ...+.+++..|++.|.
T Consensus 159 ~~~~--yEatVgaGlPiI~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~--g~~fseal~eAq~~Gy 223 (377)
T PLN02700 159 RRIR--HESTVGAGLPVIASLNRILSSGDPVHRIVGSLSGTLGYVMSELED--GKPFSEVVKQAKSLGY 223 (377)
T ss_pred CeEE--EEeeeeeccchHHHHHHHhhccCCEEEEEEEEeChHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 8887 66776743 3323233220 00 0 01122335666653 4568888999988886
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-08 Score=73.45 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+||+|++..++...+..+.++++++++|+|+|.+|+.+++.|.+.+.+.+.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999988888999999999999999999999999986555557774
Q ss_pred cCCCCceecCCCccccccCceEEeeCCccCccccc--chhccCceEEEecC
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN--NANNVTAKIILEGA 164 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e--~a~~~~~kiIve~A 164 (262)
||+|+|+....+..+ +....++.+|++.|
T Consensus 56 --------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 --------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred --------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999876555544 44445677777654
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=92.34 Aligned_cols=169 Identities=16% Similarity=0.179 Sum_probs=115.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+..+|.|.|||+||++++++|.++ ..++++|+|+++..+. ++|...+ ..+...+... .+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~- 70 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LG- 70 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------cc-
Confidence 567999999999999999999884 4799999999998875 3454444 3333222211 11
Q ss_pred CccccccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhhH---
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGVI--- 195 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGvi--- 195 (262)
.+.+...+.||++|+.+.+.-+.+++..+ +.|+||-+...|++ .|..+.-+++|+.+. |-++.||=+
T Consensus 71 ~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~--yEAtV~gGiPiI 148 (333)
T COG0460 71 DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLL--YEATVGGGIPII 148 (333)
T ss_pred HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEE--EEeeeccCcchH
Confidence 23455689999999999988888764443 67899999888885 566777788898887 777777653
Q ss_pred HHHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 196 VSYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 196 ~s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
..--|.+.... + +.-+-.-++.++++-. ..++++++.|++.|.
T Consensus 149 ~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~-~~f~dal~eAq~lGy 197 (333)
T COG0460 149 KLLRELLAGDEILSIRGILNGTTNYILTRMEEGG-LSFEDALAEAQELGY 197 (333)
T ss_pred HHHHhhcccCceEEEEEEEeccHHHHHHHHHccC-CCHHHHHHHHHHcCC
Confidence 22222221000 0 0113345667777662 369999999999876
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-08 Score=82.19 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=65.8
Q ss_pred HHHHHHHHHH-HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 39 RGVFIIGSKI-ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 39 ~Gv~~~~~~~-~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
||+-+++-.. ++..+..+.|++++|.|||.||+++|+.|+.+|++|+ |+| .||-+.++....
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e----------~DPi~alqA~~d------ 65 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTE----------IDPIRALQAAMD------ 65 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-----------SSHHHHHHHHHT------
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEE----------CChHHHHHhhhc------
Confidence 4444444333 3445788999999999999999999999999999988 999 899877766543
Q ss_pred CCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEE
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIIL 161 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIv 161 (262)
+.+..+ .++.+ ..+||||-|+.. ++++.+...+++-..|+
T Consensus 66 --Gf~v~~-~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail 106 (162)
T PF00670_consen 66 --GFEVMT-LEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAIL 106 (162)
T ss_dssp --T-EEE--HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEE
T ss_pred --CcEecC-HHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEE
Confidence 223333 34555 489999998874 78899999999655444
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.5e-08 Score=99.21 Aligned_cols=176 Identities=13% Similarity=0.173 Sum_probs=112.2
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 124 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~ 124 (262)
.+.+..+|+|.|||+||++++++|.+. ..+|++|+|+++.+++|+|+|++.+.+...... ..+ +...+
T Consensus 461 ~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~ 537 (819)
T PRK09436 461 LSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPF-DLDRL 537 (819)
T ss_pred cccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCC-CHHHH
Confidence 345889999999999999999998753 468999999999999999999987665544321 111 11100
Q ss_pred CCCcccc---ccCceEEeeCCccCcccccchhcc-CceEEEecCCCCCC------HHHHHHHHHCCCeEeccccccchhh
Q psy14499 125 NDSKEFW---SIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPTT------TEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 125 ~~~~~il---~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~t------~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.+++ ..+.||+|+|+.+..+......-+ +.+.||.+...+++ +|..+..+++|+.+. |-++.||-
T Consensus 538 ---~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~--yeatV~~g 612 (819)
T PRK09436 538 ---IRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL--YETNVGAG 612 (819)
T ss_pred ---HHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE--Eeeeeccc
Confidence 1122 246799999998765444333333 56789988888875 455566678999997 66766643
Q ss_pred ---HHHHHHHHh-h--hc---CC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 ---IVSYFEWVQ-N--LS---NL-LWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 ---i~s~~E~~~-~--~~---~~-~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+....+.++ . .. +. .-+-.-++.++++ ...+.+++..|++.|.
T Consensus 613 iPii~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~--g~~f~~al~~Aq~~Gy 665 (819)
T PRK09436 613 LPVIETLQNLLNAGDELLKFEGILSGSLSFIFGKLDE--GMSFSEATRLAKEKGY 665 (819)
T ss_pred cchHHHHHHHHhccCcEEEEEEEEeChHHHHhhhhhc--CCCHHHHHHHHHHcCC
Confidence 333333331 0 00 10 0112224444443 3457788888888775
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=87.26 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCC-C--CCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPN-G--FNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~--vv~V~D~~G~i~~~~-G--lD~~~l 105 (262)
+|-...||--+..++.++++..|++|++.+|++.|.|..|-+++++|...|.+ -+-++|++|.+|+.. - ++..+.
T Consensus 172 hDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~ 251 (432)
T COG0281 172 HDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKY 251 (432)
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHH
Confidence 46788999999999999999999999999999999999999999999999985 444999999999753 2 333332
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP 167 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p 167 (262)
....+..+.. . .++ .-.++|||+-||..+.+|+|.++++. -.+|+.-||--
T Consensus 252 ~~a~~~~~~~--------~--~~~-~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaNP~ 303 (432)
T COG0281 252 AKAIEDTGER--------T--LDL-ALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALANPT 303 (432)
T ss_pred HHHHhhhccc--------c--ccc-cccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCCCC
Confidence 2222222110 0 012 33699999999999999999999994 45999999964
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=82.92 Aligned_cols=126 Identities=16% Similarity=0.057 Sum_probs=95.7
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE----------EEEEeCCCceeeCCC-CCCHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK----------IVAIQDDKTTIYNPN-GFNIP 103 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~----------vv~V~D~~G~i~~~~-GlD~~ 103 (262)
+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|.+.+.+ -+-++|++|.+++.. .++..
T Consensus 2 qGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~ 81 (254)
T cd00762 2 QGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPN 81 (254)
T ss_pred chhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHH
Confidence 4689999999999999999999999999999999999999999886543 344999999999865 35553
Q ss_pred HHHHH-HHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 104 KLQKY-VTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 104 ~l~~~-~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+..-. +.+. ... ..+..+++ .+++||||-++. ++.+|+|.++.+. -.||+.-+|-..
T Consensus 82 ~~~~~~~~~~-------~~~-~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~ 145 (254)
T cd00762 82 EYHLARFANP-------ERE-SGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTS 145 (254)
T ss_pred HHHHHHHcCc-------ccc-cCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence 32100 1110 001 11134444 469999999998 8999999999983 459999999754
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-07 Score=81.72 Aligned_cols=126 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCCC-CCHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNG-FNIP 103 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~------~vv~V~D~~G~i~~~~G-lD~~ 103 (262)
+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|... |. +-+-++|++|.+++... ++..
T Consensus 2 qGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~ 81 (279)
T cd05312 2 QGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPF 81 (279)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHH
Confidence 4699999999999999999999999999999999999999999886 87 34459999999998653 4332
Q ss_pred HHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 104 KLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 104 ~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+ ..+.+.... . . ..+..+++ .+++||||-++. ++.+|++.++.+. -.||+.-+|--.
T Consensus 82 ~-~~~a~~~~~-~---~---~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 82 K-KPFARKDEE-K---E---GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred H-HHHHhhcCc-c---c---CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 2 122222110 0 0 11134444 469999999995 7999999999983 559999999743
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-07 Score=94.13 Aligned_cols=174 Identities=13% Similarity=0.174 Sum_probs=108.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 124 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~ 124 (262)
+.+..+|+|.|||+||++++++|.+. ..+|++|+|+++.+++++|+|...+.+..+.... .+ +...
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~--~~-~~~~- 530 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAV--EW-DEES- 530 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcC--Cc-cHHH-
Confidence 45778999999999999999998762 3789999999999999999998877665543221 11 1110
Q ss_pred CCCcccc---ccCceEEeeCCccCcccccchhcc-CceEEEecCCCCCC------HHHHHHHHHCCCeEeccccccchhh
Q psy14499 125 NDSKEFW---SIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPTT------TEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 125 ~~~~~il---~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~t------~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.-+++ ..+.+|+|+|+.+.........-+ +.+.||-+...+.+ ++..+..+++|+.+. |-++.||-
T Consensus 531 --~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~--yEasV~~g 606 (810)
T PRK09466 531 --LFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL--YNATVGAG 606 (810)
T ss_pred --HHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE--Eeceeeec
Confidence 11122 223469999998654433333333 56788888776542 344555678999998 77777754
Q ss_pred HHHHHHHHhhhc--C--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 195 IVSYFEWVQNLS--N--------L-LWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 i~s~~E~~~~~~--~--------~-~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
+=. ..-++++. + . .-+-.-+...+++ ...+.+++..|++.|.
T Consensus 607 iPi-i~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 607 LPI-NHTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred cCh-HHHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 311 11122211 1 0 0011114444443 3568888888888775
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=88.74 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=101.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.++++..|+++++.||++.|.|..|.+++++|.+.|. +++ ++|++|.|+... .++..+.
T Consensus 162 ~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~ 240 (764)
T PRK12861 162 HDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE 240 (764)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH
Confidence 3677899999999999999999999999999999999999999999999998 565 999999999854 3655432
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
.+.+.. .. -+ ..+.+. .+||||-++.++.+|+|.++++. -.||+.-+|-. ++||
T Consensus 241 -~~a~~~-~~--------~~-L~eai~-~advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 241 -RFAQET-DA--------RT-LAEVIG-GADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE 297 (764)
T ss_pred -HHHhhc-CC--------CC-HHHHHh-cCCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence 122211 10 11 345553 47999999999999999999994 44999999965 2555
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.4e-06 Score=67.26 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce
Q psy14499 43 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE 122 (262)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~ 122 (262)
.++.+++++.+.+++++++.|+|.|.+|+.+++.|.+.|...+.+.| .+.+++.+..++.+.-. . . .
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~----------r~~~~~~~~~~~~~~~~-~-~-~ 70 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVN----------RTLEKAKALAERFGELG-I-A-I 70 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEc----------CCHHHHHHHHHHHhhcc-c-c-e
Confidence 45566777778888999999999999999999999998744344777 35555555444322100 0 0 0
Q ss_pred ecCCCccccccCceEEeeCCccCcccccch----hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQITINNA----NNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
...+..+.+ .++|++|-|++....+.+.. ..+ ..++|++.+-.|...+..+.++++|+.++|-
T Consensus 71 ~~~~~~~~~-~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 71 AYLDLEELL-AEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred eecchhhcc-ccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 111123333 58999999998776411111 112 4567888776665337778889999988753
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=88.51 Aligned_cols=128 Identities=21% Similarity=0.216 Sum_probs=101.3
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|...|. +++ ++|++|.++... +++..+.
T Consensus 158 ~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~ 236 (752)
T PRK07232 158 HDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA 236 (752)
T ss_pred ccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH
Confidence 3677899999999999999999999999999999999999999999999998 454 999999999864 4554432
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
...+.. +. .+..+.+. .+||||-++.++.+|++.++++. -.||+.-+|-. ++||
T Consensus 237 --~~a~~~------~~---~~l~~~i~-~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 293 (752)
T PRK07232 237 --AYAVDT------DA---RTLAEAIE-GADVFLGLSAAGVLTPEMVKSMADNPIIFALANPDPEITPE 293 (752)
T ss_pred --HHhccC------CC---CCHHHHHc-CCCEEEEcCCCCCCCHHHHHHhccCCEEEecCCCCccCCHH
Confidence 111111 11 11445554 48999999999999999999994 45999999964 2555
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-06 Score=74.87 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=95.6
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCCC--CCHHHHHHHHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK--IVAIQDDKTTIYNPNG--FNIPKLQKYVT 110 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~--vv~V~D~~G~i~~~~G--lD~~~l~~~~~ 110 (262)
+.|+--+..++..+++..|.++++.||+|.|.|.+|+++++.|.+.|++ -+.++|++|-++.... |+.. ..++.+
T Consensus 2 qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~-~~~la~ 80 (226)
T cd05311 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPD-KNEIAK 80 (226)
T ss_pred CchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHH-HHHHHH
Confidence 4688888899999999889999999999999999999999999999987 5669999998765532 3222 122222
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhcc-CceEEEecCCCCC-CHHHHHHHHHCCCe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV-TAKIILEGANGPT-TTEADDILRDKGII 182 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~ 182 (262)
.... . ... .+ ..+.+ .++||+|-|+..+.++++..+.+ +..+|+.-. +|. |+-.++. ++.|..
T Consensus 81 ~~~~-~---~~~-~~-l~~~l-~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~~~A-~~~ga~ 145 (226)
T cd05311 81 ETNP-E---KTG-GT-LKEAL-KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWPEEA-KEAGAD 145 (226)
T ss_pred Hhcc-C---ccc-CC-HHHHH-hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCHHHH-HHcCCc
Confidence 2110 0 000 11 22333 36999999999999998888877 344888877 554 3333333 345663
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=87.30 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCC--CCCHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPN--GFNIPKL 105 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~--GlD~~~l 105 (262)
+|-.+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|...|. +++ ++|++|.++... +++..+.
T Consensus 166 ~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~ 244 (763)
T PRK12862 166 HDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA 244 (763)
T ss_pred ecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH
Confidence 3667899999999999999999999999999999999999999999999998 454 999999999864 3655442
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
. +.+.+ .. .+..+.+. .+||||-++.++.+|+|.++++. -.||+.-+|-. ++||
T Consensus 245 ~-~a~~~-~~---------~~l~e~~~-~~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP~~E~~p~ 301 (763)
T PRK12862 245 R-YAQKT-DA---------RTLAEVIE-GADVFLGLSAAGVLKPEMVKKMAPRPLIFALANPTPEILPE 301 (763)
T ss_pred H-Hhhhc-cc---------CCHHHHHc-CCCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCCcccCCHH
Confidence 1 22211 11 11445564 48999999999999999999994 44999999965 2555
|
|
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-06 Score=78.38 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=88.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCCCCCHHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA------KIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~------~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
+.||--+..++.+++|..|++|++.||++.|.|..|.+++++|.+. |. +-+-++|++|.+++.. -|+..
T Consensus 2 qGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~ 80 (255)
T PF03949_consen 2 QGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNP 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSH
T ss_pred chhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCCh
Confidence 4689999999999999999999999999999999999999999886 87 4455999999999865 33322
Q ss_pred HHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCC-ccCcccccchhccC----ceEEEecCCCC
Q psy14499 105 LQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAA-IEDQITINNANNVT----AKIILEGANGP 167 (262)
Q Consensus 105 l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa-~~~~it~e~a~~~~----~kiIve~AN~p 167 (262)
-.+...+... +.....+ ..+.+ ..+.||||-++ .++.+|+|.++.+. -.||+.-+|-.
T Consensus 81 ~~~~~a~~~~----~~~~~~~-L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt 144 (255)
T PF03949_consen 81 HKKPFARKTN----PEKDWGS-LLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPT 144 (255)
T ss_dssp HHHHHHBSSS----TTT--SS-HHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSC
T ss_pred hhhhhhccCc----ccccccC-HHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCC
Confidence 2222222110 0000111 33433 56889999999 78999999999993 45999999964
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-06 Score=76.59 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=88.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+...|+.+++. .+++..+.++.+++|+|+|+|.+|+.+++.|..+|++|+ ++|+ +.+++.+..+.
T Consensus 129 n~~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R----------~~~~~~~~~~~- 193 (287)
T TIGR02853 129 NSIPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGAR----------SSADLARITEM- 193 (287)
T ss_pred ccHhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeC----------CHHHHHHHHHC-
Confidence 34456666543 445556779999999999999999999999999999877 7663 33343333221
Q ss_pred CCccCCCCceec--CCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 113 RSIKDFNEGEKI--NDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 113 g~~~~~~~~~~~--~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
+ ...+ ++..+.+ .++|+++.|.+..+++.+....++ ..+|++-+..|- |+- +..+++|+..+
T Consensus 194 g-------~~~~~~~~l~~~l-~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 194 G-------LIPFPLNKLEEKV-AEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred C-------CeeecHHHHHHHh-ccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 1 1111 1122333 489999999988888887777774 558999999886 433 55688998775
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.9e-06 Score=75.70 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=85.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+...|+.| ++..+++..+.++.+++|.|+|+|.+|+.+++.|..+|++|+ ++|+ ++++..... ..
T Consensus 130 ns~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r----------~~~~~~~~~-~~ 194 (296)
T PRK08306 130 NSIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGAR----------KSAHLARIT-EM 194 (296)
T ss_pred ccHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEEC----------CHHHHHHHH-Hc
Confidence 44566666 445567777888999999999999999999999999999877 6673 344433222 22
Q ss_pred CCccCCCCceecC--CCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 113 RSIKDFNEGEKIN--DSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 113 g~~~~~~~~~~~~--~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+ .+.+. +..+.+ .++|++|.|++...++.+....++ -.+|++-+..|---+- +..+++|+.++
T Consensus 195 G-------~~~~~~~~l~~~l-~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~ 260 (296)
T PRK08306 195 G-------LSPFHLSELAEEV-GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKAL 260 (296)
T ss_pred C-------CeeecHHHHHHHh-CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEE
Confidence 2 12221 112233 489999999988888887776663 4477877777642111 23467888776
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.9e-06 Score=80.24 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=98.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC-C
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNG-F 100 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~------~vv~V~D~~G~i~~~~G-l 100 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.. .|. +-+-++|++|-+++... |
T Consensus 269 DDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l 348 (563)
T PRK13529 269 DDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDL 348 (563)
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 667899999999999999999999999999999999999999999987 576 23449999999998754 3
Q ss_pred CHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCCC
Q psy14499 101 NIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGPT 168 (262)
Q Consensus 101 D~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p~ 168 (262)
+..+ ..+......+..++......+..+++ .++.||||-+|. ++.+|++.++.+. -.||+.-+|-..
T Consensus 349 ~~~k-~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 349 LDFQ-KPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred hHHH-HHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 3222 11211111121111100001133444 568899999997 7999999999983 459999999754
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.2e-06 Score=81.24 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=98.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-----CCC------EEEEEeCCCceeeCCCC-
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-----AGA------KIVAIQDDKTTIYNPNG- 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-----~g~------~vv~V~D~~G~i~~~~G- 99 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.+ .|. +-+-++|++|.+++...
T Consensus 295 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~ 374 (581)
T PLN03129 295 DDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKD 374 (581)
T ss_pred cccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCc
Confidence 667899999999999999999999999999999999999999999987 465 23449999999998653
Q ss_pred -CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCCCCCHH
Q psy14499 100 -FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANGPTTTE 171 (262)
Q Consensus 100 -lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~p~t~e 171 (262)
++..+ +...+.. +. ..+..+++ .+++||||-++. ++.+|++.++.+ +-.||+.-+|-..-||
T Consensus 375 ~l~~~k--~~fa~~~-----~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E 443 (581)
T PLN03129 375 SLQPFK--KPFAHDH-----EP---GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAE 443 (581)
T ss_pred cChHHH--HHHHhhc-----cc---CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcC
Confidence 44332 2222211 01 11134444 568999999995 699999999998 4569999999753333
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.6e-06 Score=79.39 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=75.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.|++.+++.+. +..+.|++|+|+|+|.+|+.+++.|..+|++|+ |+| .|+.+.......
T Consensus 189 dn~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d----------~dp~ra~~A~~~ 254 (425)
T PRK05476 189 DNRYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTE----------VDPICALQAAMD 254 (425)
T ss_pred cccHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEc----------CCchhhHHHHhc
Confidence 555678888876665442 567899999999999999999999999999977 888 566554333322
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCc-eEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTA-KIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~-kiIve~A 164 (262)
| .+..+ .++++ ..+||+|+|+.. ++++.+....++. .+++..+
T Consensus 255 -G-------~~v~~-l~eal-~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 255 -G-------FRVMT-MEEAA-ELGDIFVTATGNKDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred -C-------CEecC-HHHHH-hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcC
Confidence 1 12222 34454 389999999863 5677777777643 3444443
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.5e-05 Score=72.23 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=88.4
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
..+.+--++..+....+..|.++.|++|.|+|+|+||+.+|+.|..+|++|+ +.|.... + . +
T Consensus 92 a~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~-~~dp~~~-------~---------~-~ 153 (378)
T PRK15438 92 AIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTL-LCDPPRA-------D---------R-G 153 (378)
T ss_pred chHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCccc-------c---------c-c
Confidence 3455555556666667777889999999999999999999999999999998 5553100 0 0 0
Q ss_pred CccCCCCceecCCCccccccCceEEeeCCc---------cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy14499 114 SIKDFNEGEKINDSKEFWSIPCDILIPAAI---------EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 181 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~il~~~~DIlipaa~---------~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi 181 (262)
. .....+ .++++ ..|||++-+.+ .+.++.+....++ ..+++..+-+++ ..+| .+.|++..+
T Consensus 154 ~-----~~~~~~-L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 154 D-----EGDFRS-LDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred c-----ccccCC-HHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 0 001112 45666 47999985544 2567777777775 669999999997 4444 577766544
Q ss_pred e-Eeccccc
Q psy14499 182 I-LAPDVIT 189 (262)
Q Consensus 182 ~-~iPD~~a 189 (262)
. .+=|+.-
T Consensus 227 ~ga~LDV~e 235 (378)
T PRK15438 227 LSVVLDVWE 235 (378)
T ss_pred cEEEEecCC
Confidence 2 3445444
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.5e-05 Score=68.29 Aligned_cols=116 Identities=19% Similarity=0.306 Sum_probs=75.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc--Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~--~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|.+|+ +.| .+.+++.+..+. | ....++++++... ++|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYD----------RNPEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999987 677 466666555432 2 2222224445432 478
Q ss_pred EEeeCCccCcccccch----hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 137 ILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 137 Ilipaa~~~~it~e~a----~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+++-|-+......+.. ..+ ..++|++..+... +.+..+.++++|+.++ | .-.+||+.
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~ 125 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVW 125 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHH
Confidence 8887766542322222 222 2457888776543 4556688899999998 4 44556653
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.9e-06 Score=78.76 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=74.0
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIG-SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~-~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
.||...++ ...++..+..+.|++|+|+|+|+||+.+|+.|..+|++|+ ++| .|+.........
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e----------~dp~~a~~A~~~----- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTE----------IDPICALQAAME----- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhHHHHHhc-----
Confidence 34444433 3445555778999999999999999999999999999977 776 344443222221
Q ss_pred CCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCce-EEEecCCC
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAK-IILEGANG 166 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~k-iIve~AN~ 166 (262)
+.+..+ .++++ ..+||++.|+.. ++++.+....++.. +++..+-.
T Consensus 297 ---G~~~~~-leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 ---GYQVVT-LEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---Cceecc-HHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 222233 44555 489999999764 78888888888643 66665555
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=75.47 Aligned_cols=101 Identities=16% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.+++ +..++..+..+.|++|+|+|+|.+|+.+++.+..+|++|+ |+| .|+.++....+.
T Consensus 179 dn~~g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d----------~d~~R~~~A~~~ 244 (413)
T cd00401 179 DNLYGCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTE----------VDPICALQAAME 244 (413)
T ss_pred cccchhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEE----------CChhhHHHHHhc
Confidence 44445677664 4455666888999999999999999999999999999977 678 677665544432
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVT 156 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~ 156 (262)
+...++ .++.+ .++||+|+|+.. .+++.+....++
T Consensus 245 --------G~~~~~-~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk 280 (413)
T cd00401 245 --------GYEVMT-MEEAV-KEGDIFVTTTGNKDIITGEHFEQMK 280 (413)
T ss_pred --------CCEEcc-HHHHH-cCCCEEEECCCCHHHHHHHHHhcCC
Confidence 222222 23444 478999999864 556665555553
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-06 Score=68.77 Aligned_cols=90 Identities=18% Similarity=0.284 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCceEEe
Q psy14499 65 GFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCDILI 139 (262)
Q Consensus 65 GfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~DIli 139 (262)
|||+||+.+++.|.+. +.++++|+|++ ...+++ . .... . +.....+.+++++ .++||+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~-----~-~~~~-~--------~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD-----W-AASF-P--------DEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT-----H-HHHH-T--------HSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh-----h-hhhc-c--------cccccCCHHHHhcCcCCCEEE
Confidence 8999999999999885 79999999998 666654 1 1111 1 1112222455554 5899999
Q ss_pred eCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 140 PAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 140 paa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+|+..+.+. +......++|+.+ +.+|+++..
T Consensus 65 E~t~~~~~~----------------------~~~~~~L~~G~~V---Vt~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAVA----------------------EYYEKALERGKHV---VTANKGALA 95 (117)
T ss_dssp E-SSCHHHH----------------------HHHHHHHHTTCEE---EES-HHHHH
T ss_pred ECCCchHHH----------------------HHHHHHHHCCCeE---EEECHHHhh
Confidence 997653322 1223446799998 689999886
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0001 Score=67.96 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=76.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.+|.|++|.|+|||++|+.+|+++..+|.+|+ ..|+.+. +. .. . .+..+ .++++ .
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~-~~d~~~~-------~~--------~~----~---~~~~~-l~ell-~ 195 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVV-YYSTSGK-------NK--------NE----E---YERVS-LEELL-K 195 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEE-EECCCcc-------cc--------cc----C---ceeec-HHHHh-h
Confidence 36899999999999999999999999999998 4454211 00 00 0 11122 45666 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCeEecccc
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGIILAPDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~~iPD~~ 188 (262)
.||+++-+.+. +.|+.+...+++ .-+++.-+-+++ .. ...+.|++.-|...=|+.
T Consensus 196 ~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~ 258 (311)
T PRK08410 196 TSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVL 258 (311)
T ss_pred cCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecC
Confidence 79999877653 677778888885 669999999997 33 345777776565334443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=67.41 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ . ...-...... ..+..+ .++++
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~---~~~~~~~~~~--------~~~~~~-l~ell- 89 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVI-GYDR-------S---PKPEEGADEF--------GVEYVS-LDELL- 89 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEE-EEES-------S---CHHHHHHHHT--------TEEESS-HHHHH-
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeE-Eecc-------c---CChhhhcccc--------cceeee-hhhhc-
Confidence 568999999999999999999999999999998 4442 1 1111111111 122222 55666
Q ss_pred cCceEEeeCCc-----cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCCe
Q psy14499 133 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~-----~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi~ 182 (262)
..||+++-+.+ .+.++.+...+++ --+++.-+.+++ ..+| .+.|++.-+.
T Consensus 90 ~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 90 AQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp HH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred chhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 47999998876 3777778888885 559999999987 4444 4666665444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=74.47 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=76.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
-.||.+++.+ +++..+..+.|++|+|+|+|.+|+.+++.++.+|++|+ |+| .|+.+.......
T Consensus 175 yg~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d----------~dp~r~~~A~~~--- 237 (406)
T TIGR00936 175 YGTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTE----------VDPIRALEAAMD--- 237 (406)
T ss_pred cccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEe----------CChhhHHHHHhc---
Confidence 3566655433 34444667899999999999999999999999999987 677 566554333321
Q ss_pred ccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccC-ceEEEecCCCC--CC-HHHHHHHHH
Q psy14499 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVT-AKIILEGANGP--TT-TEADDILRD 178 (262)
Q Consensus 115 ~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~-~kiIve~AN~p--~t-~ea~~~l~~ 178 (262)
+....+ .++.+ .++||+|.|+.. ++++.+....++ ..+++..+-.+ +. ++..+.+.+
T Consensus 238 -----G~~v~~-leeal-~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~ 299 (406)
T TIGR00936 238 -----GFRVMT-MEEAA-KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVE 299 (406)
T ss_pred -----CCEeCC-HHHHH-hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhh
Confidence 122232 33444 479999998864 556766666664 33555544444 44 333444433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=69.05 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--CceecCCCccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--EGEKINDSKEF 130 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--~~~~~~~~~~i 130 (262)
+.++.|+++.|+|+|++|+.+|+.|..+|++|+ +.|+... + +......+.. ..+..+. .....+ .+++
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~-~~dr~~~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~-L~el 223 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL-ATRRSWT---S---EPEDGLLIPN--GDVDDLVDEKGGHED-IYEF 223 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEE-EECCCCC---h---hhhhhhcccc--ccccccccccCcccC-HHHH
Confidence 346899999999999999999999999999998 4454210 0 0000000000 0000000 011112 4556
Q ss_pred cccCceEEeeCCc-----cCcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy14499 131 WSIPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGI 181 (262)
Q Consensus 131 l~~~~DIlipaa~-----~~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi 181 (262)
+ ..+||++-+.+ .+.++.+....++ ..+++.-+-+++ ..+| .+.|++.-|
T Consensus 224 l-~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 224 A-GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred H-hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 6 47999998876 3677777777784 569999999997 4443 566666544
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=66.75 Aligned_cols=115 Identities=23% Similarity=0.291 Sum_probs=78.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.++|+|++|+.+|+.|.+.|+.|. +.| .+.+++.++.+.. .+..+++.++. ..||++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d----------~~~~~~~~~~~~g--------~~~~~s~~e~~-~~~dvv 61 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYD----------RSPEKAEALAEAG--------AEVADSPAEAA-EQADVV 61 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEE----------SSHHHHHHHHHTT--------EEEESSHHHHH-HHBSEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eec----------cchhhhhhhHHhh--------hhhhhhhhhHh-hcccce
Confidence 589999999999999999999999987 777 6788877777652 34444345555 478999
Q ss_pred eeCCccCcccccc------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 139 IPAAIEDQITINN------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 139 ipaa~~~~it~e~------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+-|-+.+....+. ...+ +.++|++..+... +.+..+.++++|+.|+=-.+. ||..
T Consensus 62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~--Gg~~ 125 (163)
T PF03446_consen 62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVS--GGPP 125 (163)
T ss_dssp EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE--SHHH
T ss_pred EeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeee--cccc
Confidence 9886643322222 2223 6779998887754 566778889999999866665 6653
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=75.00 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=73.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++.-.||.+++ +..++..+..+.|++|+|+|+|.+|+.+|+.+..+|++|+ ++| .|+.+.......
T Consensus 231 Dn~yGtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e----------~dp~r~~eA~~~ 296 (477)
T PLN02494 231 DNLYGCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTE----------IDPICALQALME 296 (477)
T ss_pred hccccccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCchhhHHHHhc
Confidence 33445666653 3444555777899999999999999999999999999987 676 455443333222
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCce-EEEecCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAK-IILEGAN 165 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~k-iIve~AN 165 (262)
+...++ .++++ ..+||++.|+.. ++++.+....++.. +++..+.
T Consensus 297 --------G~~vv~-leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 297 --------GYQVLT-LEDVV-SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred --------CCeecc-HHHHH-hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence 111222 34444 378999998874 56788888888543 4444444
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.7e-05 Score=71.26 Aligned_cols=158 Identities=10% Similarity=0.061 Sum_probs=93.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ ...+.+. . +.. +.+...+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~-~~dr-------~~~~~~~-~---~~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLH-YTDR-------HRLPEEV-E---QEL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------CCCchhh-H---hhc-------CceecCCHHHHh-h
Confidence 35899999999999999999999999999988 4453 2122111 1 111 112122245666 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCCC--HHHHHHHHHCCCe-EeccccccchhhHHHHHHHHhh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPTT--TEADDILRDKGII-LAPDVITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~t--~ea~~~l~~rgi~-~iPD~~aN~GGvi~s~~E~~~~ 204 (262)
.|||++-+.+. ++++++....++ ..+++.-+-+++- .+..+.|++.-|. ..=|+.-+---...+-+.-+.|
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pN 327 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPR 327 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCC
Confidence 89999988763 566677777774 5699999999873 3445777776554 3333332110000011111112
Q ss_pred ---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 ---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 ---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..+...+...++.+...+++.+.+
T Consensus 328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~ 357 (385)
T PRK07574 328 NGMTPHISGTTLSAQARYAAGTREILECFF 357 (385)
T ss_pred eEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 234555555666665555555555544
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.9e-05 Score=74.70 Aligned_cols=131 Identities=15% Similarity=0.063 Sum_probs=97.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC--
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA------KIVAIQDDKTTIYNPNG-- 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~------~vv~V~D~~G~i~~~~G-- 99 (262)
|-.+.||--+..++.+++|..|.++++.||++.|.|..|.++|++|.. .|. +-+-++|++|-+++..+
T Consensus 271 DDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~ 350 (559)
T PTZ00317 271 DDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDK 350 (559)
T ss_pred ccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcc
Confidence 667899999999999999999999999999999999999999999874 676 33449999999998753
Q ss_pred CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCCC
Q psy14499 100 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANGP 167 (262)
Q Consensus 100 lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~p 167 (262)
++..+ ....+... ..++.. ..+..+++ .++.||||-+|. ++.+|++.++.+. -.||+.-+|-.
T Consensus 351 l~~~k--~~fa~~~~--~~~~~~-~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt 419 (559)
T PTZ00317 351 LAKHK--VPFARTDI--SAEDSS-LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPT 419 (559)
T ss_pred ccHHH--HHHhcccc--cccccc-CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 44333 21221100 000000 11133443 578899999996 7999999999884 45999999975
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00029 Score=64.17 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..+++. .+.++++++|+|+|.|.+|++++..|.+.|++-+.|.| .+.++..++.+.... .
T Consensus 111 ~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~n----------R~~~ka~~la~~l~~--~ 174 (284)
T PRK12549 111 WSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFD----------VDPARAAALADELNA--R 174 (284)
T ss_pred HHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEC----------CCHHHHHHHHHHHHh--h
Confidence 6677776653 33467889999999999999999999999985555888 455665555443211 0
Q ss_pred CCCceecCCCcc---ccccCceEEeeCCccCccccc--c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 118 FNEGEKINDSKE---FWSIPCDILIPAAIEDQITIN--N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 118 ~~~~~~~~~~~~---il~~~~DIlipaa~~~~it~e--~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
++...... .++ .+ .++|++|.|++.+.-... + ...+ +..+|++...+|.....-+.-+++|..++..
T Consensus 175 ~~~~~~~~-~~~~~~~~-~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 175 FPAARATA-GSDLAAAL-AAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLDG 249 (284)
T ss_pred CCCeEEEe-ccchHhhh-CCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence 11111111 122 22 479999999876542211 1 1223 3458999999987545555668899887643
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=69.62 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+.+--++..+..+.++.|.++.|++|.|+|+|+||+.+++.|..+|++|+ ++|.... . .. +
T Consensus 94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp~~~----------~-----~~-~-- 154 (381)
T PRK00257 94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDPPRQ----------E-----AE-G-- 154 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCccc----------c-----cc-c--
Confidence 44444455555666777889999999999999999999999999999998 5563110 0 00 0
Q ss_pred cCCCCceecCCCccccccCceEEeeCCcc---------CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCC
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIE---------DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGI 181 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~---------~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi 181 (262)
.....+ .++++ .+|||++-+.+. +.++.+....++ ..+++..+-+++ ..+ ..+.|++.-+
T Consensus 155 ----~~~~~~-l~ell-~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i 226 (381)
T PRK00257 155 ----DGDFVS-LERIL-EECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGED 226 (381)
T ss_pred ----CccccC-HHHHH-hhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCC
Confidence 001112 44555 378888755442 567777777774 558888888886 333 3466655543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0001 Score=70.10 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|. ...+.+.. ++. +.+..++.++++ .
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~-~~d~-------~~~~~~~~----~~~-------g~~~~~~l~ell-~ 254 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLL-YHDR-------LKMDPELE----KET-------GAKFEEDLDAML-P 254 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEE-EECC-------CCcchhhH----hhc-------CceecCCHHHHH-h
Confidence 36899999999999999999999999999987 4553 22222211 111 122222245666 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCCC-HH-HHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPTT-TE-ADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~t-~e-a~~~l~~rgi~ 182 (262)
+|||++-+.+. +.++.+....++ ..+++.-+-+++- .+ ..+.|++.-|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 79999988773 566666666663 5699999999873 33 35777766554
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=67.88 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|... +... .+..+ ....+ .++++ .
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~--------~~~~----~~~~~-------~~~~~-l~ell-~ 203 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR--------KPEA----EKELG-------AEYRP-LEELL-R 203 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC--------Chhh----HHHcC-------CEecC-HHHHH-h
Confidence 46899999999999999999999999999987 556421 1111 11111 11122 45565 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCeE-eccccccchhhHHHHHHHHhh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGIIL-APDVITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~~ 204 (262)
++|+++-|.+. +.++.+....++ ..+++.-+-+++ .. ...+.|++.-|.- .=|+..+=--. -+.+.-+.|
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~n 282 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCC
Confidence 89999988874 556666666664 558889888887 33 3457776654432 22332211100 111111122
Q ss_pred ---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 ---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 ---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..|..++...++.+.+.+++.+.+
T Consensus 283 vilTPHia~~t~e~~~~~~~~~~~ni~~~~ 312 (333)
T PRK13243 283 VVLAPHIGSATFEAREGMAELVAENLIAFK 312 (333)
T ss_pred EEECCcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 236666666666666555555554443
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=67.57 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|+||.|+|||++|+.+|+.|..+|++|+ ..|. . .... .. ...+...+++.++++
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d~-------~--~~~~---~~-------~~~~~~~~~~Ld~lL- 195 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYDP-------Y--SPRE---RA-------GVDGVVGVDSLDELL- 195 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EECC-------C--Cchh---hh-------ccccceecccHHHHH-
Confidence 457889999999999999999999999999998 4442 1 0111 00 000122223255677
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
..+||++-..+. ++|+.+...+++ .-+++..|-+++ . +...+.|++.-|.
T Consensus 196 ~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 196 AEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred hhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 589998866553 777888888884 449999999998 3 3335666654443
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00085 Score=60.79 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
.+.|...+++. ..+.++++++++|.|.|.+|+++++.|.+.|+ +|+ |+++ +.+++.++.++....
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R----------~~~~a~~l~~~~~~~ 170 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNR----------TVERAEELAKLFGAL 170 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeC----------CHHHHHHHHHHhhhc
Confidence 45565555542 24668899999999999999999999999994 555 7773 455555554433211
Q ss_pred cCCCCcee-cCCCccccccCceEEeeCCccCccccc-----chhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 116 KDFNEGEK-INDSKEFWSIPCDILIPAAIEDQITIN-----NANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 116 ~~~~~~~~-~~~~~~il~~~~DIlipaa~~~~it~e-----~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
. .... .+ ..+.+ .++||+|-|++.+.-... +...+ ...+|++..-.|......+.-+++|+.++
T Consensus 171 ~---~~~~~~~-~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~ 241 (278)
T PRK00258 171 G---KAELDLE-LQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTI 241 (278)
T ss_pred c---ceeeccc-chhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeec
Confidence 0 0111 11 11223 479999999987654311 12233 35689999999974444455588998776
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00041 Score=66.32 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC
Q psy14499 39 RGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118 (262)
Q Consensus 39 ~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~ 118 (262)
-++..+.-..++..-.+|++++|.|+|.|.+|.-+|+.|.++|.+-+.|+.+ ..++..++.++.+
T Consensus 159 VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T~erA~~La~~~~----- 223 (414)
T COG0373 159 VSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------TLERAEELAKKLG----- 223 (414)
T ss_pred cchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------CHHHHHHHHHHhC-----
Confidence 4445555555665555699999999999999999999999999877778873 5677777766654
Q ss_pred CCceecCCCccccc--cCceEEeeC--CccCcccccchhcc---Cce-EEEecCCCCC
Q psy14499 119 NEGEKINDSKEFWS--IPCDILIPA--AIEDQITINNANNV---TAK-IILEGANGPT 168 (262)
Q Consensus 119 ~~~~~~~~~~~il~--~~~DIlipa--a~~~~it~e~a~~~---~~k-iIve~AN~p~ 168 (262)
++.++ .+++.+ .++||+|-| ++..+++.++.... +.+ ++++-||.+-
T Consensus 224 --~~~~~-l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 224 --AEAVA-LEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred --Ceeec-HHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 23232 333332 599999999 45688888777665 233 9999999875
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00043 Score=67.56 Aligned_cols=156 Identities=16% Similarity=0.208 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..++ +..+.++++++++|.|.|.+|++++..|.+.|++++ +.| -+.+++.+..+..+.
T Consensus 316 ~~G~~~~l----~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~----------R~~~~~~~la~~~~~--- 377 (477)
T PRK09310 316 GEGLFSLL----KQKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFN----------RTKAHAEALASRCQG--- 377 (477)
T ss_pred HHHHHHHH----HhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHHhcc---
Confidence 56666555 445778899999999999999999999999999876 666 345555554443210
Q ss_pred CCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCC-CHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPT-TTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~-t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
....+++..+ + .++|++|-|++.+..-.+ .+ .++|++-.-+|. |+ ..+..+++|+.++...---..=. .
T Consensus 378 --~~~~~~~~~~-l-~~~DiVInatP~g~~~~~---~l-~~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G~~Ml~~Qa-~ 447 (477)
T PRK09310 378 --KAFPLESLPE-L-HRIDIIINCLPPSVTIPK---AF-PPCVVDINTLPKHSP-YTQYARSQGSSIIYGYEMFAEQA-L 447 (477)
T ss_pred --ceechhHhcc-c-CCCCEEEEcCCCCCcchh---HH-hhhEEeccCCCCCCH-HHHHHHHCcCEEECcHHHHHHHH-H
Confidence 0001110111 2 479999999986643222 12 248999998887 55 55666889988763321100000 1
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 197 SYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 197 s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
-.|| .|+..+..++++...++.+.+
T Consensus 448 ~~f~--------lw~g~~~~~~~~~~~~~~~~~ 472 (477)
T PRK09310 448 LQFR--------LWFPTLLFKHLEKTFRRRVAN 472 (477)
T ss_pred HHHH--------HHcCCcccHHHHHHHHHHHHH
Confidence 1122 266667777777776665543
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.8e-05 Score=70.37 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.++.-.||.+.+-++..+ .+.-+.|++++|.|||-||+++|..|...|++|+ |++ +||-..++..-
T Consensus 185 FDNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtE----------vDPI~AleA~M 250 (420)
T COG0499 185 FDNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTE----------VDPIRALEAAM 250 (420)
T ss_pred cccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEe----------cCchHHHHHhh
Confidence 456667888776665544 3566899999999999999999999999999988 988 77765554432
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILE 162 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve 162 (262)
. +.++++ .++.. ...||||-|+. .++|+.|....++-..|+.
T Consensus 251 d--------Gf~V~~-m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~ 293 (420)
T COG0499 251 D--------GFRVMT-MEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAILA 293 (420)
T ss_pred c--------CcEEEE-hHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEEe
Confidence 2 334443 33333 36799999987 6999999999997665553
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0015 Score=58.93 Aligned_cols=130 Identities=15% Similarity=0.143 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
-++|...+++ ..+...++++++|.|.|.+|+.++..|.+.|.+|+ |.| -+.+++.++.++...
T Consensus 100 D~~G~~~~l~----~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~----------R~~~~~~~la~~~~~-- 162 (270)
T TIGR00507 100 DGIGLVSDLE----RLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IAN----------RTVSKAEELAERFQR-- 162 (270)
T ss_pred CHHHHHHHHH----hcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHHHhh--
Confidence 4667766654 33445678999999999999999999999998766 766 345555554443211
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCccccc---c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEec
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN---N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILAP 185 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e---~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iP 185 (262)
+......+ .++....++|++|-|++.+..... + ...+ ..++|++..-.|......+..+++|+.++.
T Consensus 163 -~~~~~~~~-~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 163 -YGEIQAFS-MDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTKTID 235 (270)
T ss_pred -cCceEEec-hhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeeeC
Confidence 11111222 222222479999999986532211 1 1223 345899998888633466677899988763
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.1e-05 Score=60.01 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc--
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-- 131 (262)
.++++++++|+|.|.+|+.++..|.+.|++-+.|+++ +.+++.++.++.+.. ..+.++ .+++.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t~~ra~~l~~~~~~~----~~~~~~-~~~~~~~ 72 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------TPERAEALAEEFGGV----NIEAIP-LEDLEEA 72 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------SHHHHHHHHHHHTGC----SEEEEE-GGGHCHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------CHHHHHHHHHHcCcc----ccceee-HHHHHHH
Confidence 4889999999999999999999999999986668773 677777776654210 112222 22332
Q ss_pred ccCceEEeeCCcc--CcccccchhccCc--eEEEecCCCC-CCHH
Q psy14499 132 SIPCDILIPAAIE--DQITINNANNVTA--KIILEGANGP-TTTE 171 (262)
Q Consensus 132 ~~~~DIlipaa~~--~~it~e~a~~~~~--kiIve~AN~p-~t~e 171 (262)
-.++||+|-|++. ..++.+....... ++|++-|+-+ +.|+
T Consensus 73 ~~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 73 LQEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HHTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred HhhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 2589999999875 4778887777653 6999998642 3444
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00068 Score=62.67 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=72.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.|++|.|+|+|++|+.+|++|..+|++|++. |... - .. . . ....+ .++++ ..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~-------~--~~---~--~---------~~~~~-l~ell-~~ 197 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG-------A--SV---C--R---------EGYTP-FEEVL-KQ 197 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc-------c--cc---c--c---------cccCC-HHHHH-Hh
Confidence 689999999999999999999999999999853 4211 0 00 0 0 00112 45666 47
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
||+++-+.+. +.++.+...+++ .-+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 9999977653 677778888884 669999999997 444 35777766554
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=64.93 Aligned_cols=108 Identities=11% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
|.+|.|+++.|+|+|++|+.+|+.|. .+|.+|+ ..|... +.+.. +.. +.+..+ .++++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~~-------~~~~~~-l~ell 198 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ERF-------NARYCD-LDTLL 198 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hhc-------CcEecC-HHHHH
Confidence 44689999999999999999999998 8999987 444210 11110 111 122223 56666
Q ss_pred ccCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 132 SIPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 132 ~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
..||+++-+.+. +.++.+....++ .-+++.-+-+++ .. ...+.|++.-|.
T Consensus 199 -~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 199 -QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred -HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 589999887653 667777777774 559999999998 33 345777766553
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=66.07 Aligned_cols=110 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK--AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~--~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
++.+||.|+|+|.+|+..++.|.+ .++++++|+| -++++..+..++.+. ...+++.++++ .
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d----------r~~~~a~~~a~~~g~------~~~~~~~eell-~ 66 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV----------RDPQRHADFIWGLRR------PPPVVPLDQLA-T 66 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC----------CCHHHHHHHHHhcCC------CcccCCHHHHh-c
Confidence 567899999999999999999986 4899999988 466666555544331 11223245666 4
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCC-CCHHHHHHHHHCCCeE
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGP-TTTEADDILRDKGIIL 183 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p-~t~ea~~~l~~rgi~~ 183 (262)
++|+++.|++.+.. .+.+... ...++++..... ...+..+..+++|+.+
T Consensus 67 ~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l 119 (271)
T PRK13302 67 HADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI 119 (271)
T ss_pred CCCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence 79999999987654 4443332 344666532211 1345556668888766
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00047 Score=64.08 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|+|+.|+|+|.+|+.+|+.++.+|.+|+ ..| +... ++. .+ .. +.+.++ .++++
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~-------~~~~-~~~-~~----~~------~~~y~~-l~ell- 198 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYD-------RSPN-PEA-EK----EL------GARYVD-LDELL- 198 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EEC-------CCCC-hHH-Hh----hc------Cceecc-HHHHH-
Confidence 357899999999999999999999999999987 434 3322 111 11 11 133344 56677
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC--CHHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT--TTEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~--t~ea~~~l~~rgi~ 182 (262)
..+||++-..+. +.||.+...+++ .-+++.-+-+++ ++...+.|++.-|.
T Consensus 199 ~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 199 AESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 589999876653 677777777775 469999999998 34456888887665
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0005 Score=58.67 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
-|++..+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+ +.++ +.+++.+..+....
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R----------~~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGR----------DLERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHHHHHh
Confidence 5778888888888988899999999999996 9999999999999999887 5452 34444444332110
Q ss_pred ccCCCCcee--cCCCcc---ccccCceEEeeCCccCcccccchh-ccC-ceEEEecCCCC-CCHHH
Q psy14499 115 IKDFNEGEK--INDSKE---FWSIPCDILIPAAIEDQITINNAN-NVT-AKIILEGANGP-TTTEA 172 (262)
Q Consensus 115 ~~~~~~~~~--~~~~~~---il~~~~DIlipaa~~~~it~e~a~-~~~-~kiIve~AN~p-~t~ea 172 (262)
..+. .... ..+.++ .+ .++|++|-|+.....+..... ..+ .++|++-+..| ++++.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~-~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAI-KGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHH-hcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 0000 0111 111222 23 489999999886653222222 122 46889876665 46553
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=65.61 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=101.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~D 136 (262)
++|.|+|+|++|..+++.|.+.|.+|+ +.| .+++++.++.+... ...++.+++.+ .++|
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~d----------r~~~~~~~l~~~g~--------~~~~s~~~~~~~~~~~d 61 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYD----------HDQDAVKAMKEDRT--------TGVANLRELSQRLSAPR 61 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHcCC--------cccCCHHHHHhhcCCCC
Confidence 379999999999999999999999987 567 57777666654321 11111223322 3689
Q ss_pred EEeeCCccCcccccc----hhcc-CceEEEecCCCC--CCHHHHHHHHHCCCeEeccccc------------cchhhHHH
Q psy14499 137 ILIPAAIEDQITINN----ANNV-TAKIILEGANGP--TTTEADDILRDKGIILAPDVIT------------NAGGVIVS 197 (262)
Q Consensus 137 Ilipaa~~~~it~e~----a~~~-~~kiIve~AN~p--~t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s 197 (262)
+++-|.+.. ...+. ++.+ +-++|++..|.. .|.+..+.++++|+.++--.+. ..||=-.
T Consensus 62 vIi~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~- 139 (298)
T TIGR00872 62 VVWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGE- 139 (298)
T ss_pred EEEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHH-
Confidence 999887765 33333 2333 357999999984 3666778889999988743332 2222111
Q ss_pred HHHHHh----hhc----CCCC--------CHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHH
Q psy14499 198 YFEWVQ----NLS----NLLW--------TEQEINLRLNNIICNAFDAIWELANTK--KVSLRTAAFII 248 (262)
Q Consensus 198 ~~E~~~----~~~----~~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~~~--~~~~r~aa~~~ 248 (262)
.++-++ ... +..+ ..+.+...+...+-..+.+-+..+++. ++++.+.+.++
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 140 AFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 112111 111 0111 012233444555556777788888876 56777766553
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=64.51 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.+|.|++|.|+|+|++|+.+|++|..+|++|+ +.|++. .++|.. ....+.++++ .
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~-~~~r~~---~~~~~~--------------------~~~~~l~ell-~ 172 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIY-AYTRSY---VNDGIS--------------------SIYMEPEDIM-K 172 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC---cccCcc--------------------cccCCHHHHH-h
Confidence 47899999999999999999999999999998 445421 111110 0011145566 4
Q ss_pred CceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-C-HHHHHHHHHCCC
Q psy14499 134 PCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-T-TEADDILRDKGI 181 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t-~ea~~~l~~rgi 181 (262)
+||+++-|.+. ++++.+....+ +..+++.-+-+++ . .+..+.|+++-+
T Consensus 173 ~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred hCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 89999988764 45666666666 3558888888876 3 444677776644
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0006 Score=67.28 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=94.0
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ ..|+ . .+.+.. ++. +.+..++.++++
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~-~~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL-AYDP-------Y-ISPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------C-CChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 456899999999999999999999999999988 4342 2 122211 111 122222245666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCeE-eccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGIIL-APDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~ 203 (262)
.+||+++-|.+. +.++.+....++ ..+++.-+-+++ . .+..+.|++..|.- .=|+..+=-.. -+.+.-..
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 489999988763 566666666663 558999999987 3 33457777776643 23332221111 11111011
Q ss_pred h---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 204 N---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 204 ~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
| .+|..|..++...++...+.+++.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 2 236666666666666555555555544
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.1e-05 Score=61.94 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=62.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++..-+ .|-|..++..... .+....++.++++.. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~--~g~d~g~~~~~~~--------~~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAK--VGKDVGELAGIGP--------LGVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTT--TTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccc--ccchhhhhhCcCC--------cccccchhHHHhccc-CC
Confidence 48999999 9999999999988 7999999999766222 3556655432221 122233334556654 99
Q ss_pred EEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHH
Q psy14499 137 ILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRD 178 (262)
Q Consensus 137 Ilipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~ 178 (262)
|+|+++.+.... -+.+.+.+..+|+.-... +++..+.|++
T Consensus 70 VvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEE 111 (124)
T ss_dssp EEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHH
T ss_pred EEEEcCChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHH
Confidence 999999544332 122333355666654332 4444444444
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=70.84 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+..+|+|.|+|+||+.+++.|.+. +.++++|+|++..-. .+++ +++....++
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d 63 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTD 63 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCC
Confidence 457999999999999999988653 578999999532111 1111 111122233
Q ss_pred Ccccc-ccCceEEeeCCccCcccccchhc-c-CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhh---HHH
Q psy14499 127 SKEFW-SIPCDILIPAAIEDQITINNANN-V-TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGV---IVS 197 (262)
Q Consensus 127 ~~~il-~~~~DIlipaa~~~~it~e~a~~-~-~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGv---i~s 197 (262)
.++++ +.+.||+++|+.+.....+.+.. + ..|.|+-....+.. ++..+..+++|+.+. |-+..||- +..
T Consensus 64 ~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~--fEasV~ggiPii~~ 141 (426)
T PRK06349 64 PEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY--FEAAVAGGIPIIKA 141 (426)
T ss_pred HHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE--EEEEeeccCchHHH
Confidence 45666 35799999998654333333322 2 34666654333332 444555578898776 55554533 333
Q ss_pred HHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 198 YFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 198 ~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
..+.+.... + +.-+-.-+..++++. ...+.+++..|++.|.
T Consensus 142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 333322100 0 001222345555432 3468899999998875
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00013 Score=65.71 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||.|+|+|++|+.+++.|.+. +..+++|+| .+.++..++.+..+ ...+++.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d----------~~~~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYD----------RNLEKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEEC----------CCHHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 5899999999999999998875 588899988 46666555544322 22233355666 6899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecC----CCCCCHHHHHHHHHCCCeEe
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGA----NGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~A----N~p~t~ea~~~l~~rgi~~i 184 (262)
+++.|+..+.. .+.+... +..+|+... +.++..+..+..+++|+.+.
T Consensus 64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 99999976554 3333322 344666543 22223344555677886554
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=61.80 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|.+|+ +.|. +.+...... +..++.++++ .
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~-~~d~----------~~~~~~~~~------------~~~~~l~ell-~ 197 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATIT-AYDA----------YPNKDLDFL------------TYKDSVKEAI-K 197 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEeC----------ChhHhhhhh------------hccCCHHHHH-h
Confidence 36899999999999999999999999999998 4452 111111100 0111134555 4
Q ss_pred CceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
++|+++.|.+.. .++.+....++ ..+++..+-+++ . ....+.|++.-+.
T Consensus 198 ~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 198 DADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred cCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 899999888753 45555555663 559999999997 3 4445777766553
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=63.59 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.|++|.|+|+|++|+.+|++|..+|++|++. |..+ .+.. ....+ .++++ ..
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~---------------------~~~~~-l~ell-~~ 197 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPAR---------------------PDRLP-LDELL-PQ 197 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Cccc---------------------ccccC-HHHHH-Hh
Confidence 689999999999999999999999999999844 4321 0100 00112 45666 48
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
+|+++-+.+. +.++.+...+++ .-+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8999977653 677788888885 569999999997 433 45777766554
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=64.55 Aligned_cols=111 Identities=16% Similarity=0.205 Sum_probs=68.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+|+ |.+|+.+++.+.+ .+.++++++|++. +..... .. + +....++.++++. ++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~----------~~~~~~-~~------~-~i~~~~dl~~ll~-~~D 62 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG----------SPLVGQ-GA------L-GVAITDDLEAVLA-DAD 62 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------cccccc-CC------C-CccccCCHHHhcc-CCC
Confidence 58999998 9999999999886 5799999999532 111111 11 1 1112232445554 899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHHH----HHCCCeEeccccccc
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDIL----RDKGIILAPDVITNA 191 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~l----~~rgi~~iPD~~aN~ 191 (262)
++|+++.++.. .+++... +..+|++ ...++++..+.| ++.++.+.|.|-...
T Consensus 63 vVid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~ 121 (257)
T PRK00048 63 VLIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSIGV 121 (257)
T ss_pred EEEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchHHH
Confidence 99999977664 4444333 5567766 344555433333 335677888876533
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0047 Score=59.31 Aligned_cols=101 Identities=14% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.+++|+|+|.|.+|+.+++.|...|+.-+.+++ .++++..++.++.+. ....+++..+.+ .+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~----------r~~~ra~~la~~~g~-----~~~~~~~~~~~l-~~ 242 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVAN----------RTLERAEELAEEFGG-----EAIPLDELPEAL-AE 242 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEe----------CCHHHHHHHHHHcCC-----cEeeHHHHHHHh-cc
Confidence 57899999999999999999999999985444777 456666555554331 011111112223 47
Q ss_pred ceEEeeCCcc--Ccccccchhcc------CceEEEecCCCC-CCHH
Q psy14499 135 CDILIPAAIE--DQITINNANNV------TAKIILEGANGP-TTTE 171 (262)
Q Consensus 135 ~DIlipaa~~--~~it~e~a~~~------~~kiIve~AN~p-~t~e 171 (262)
+||+|.|+.. .+++.+..... +-.++++.|+.. +.|+
T Consensus 243 aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 243 ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 9999999863 56777666543 346899999743 4444
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0028 Score=62.67 Aligned_cols=133 Identities=13% Similarity=0.121 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHH------hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 37 TGRGVFIIGSKIASK------INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~------~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
-++|+..+++..++. .+.++++++++|.|.|.+|++++..|.+.|++|+ ++++ +.++..++.+
T Consensus 352 D~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR----------~~e~a~~la~ 420 (529)
T PLN02520 352 DYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANR----------TYERAKELAD 420 (529)
T ss_pred cHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcC----------CHHHHHHHHH
Confidence 367888888754422 2457889999999999999999999999999876 7773 4555555544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccCcccc---cch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI---NNA--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~---e~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+.+. ....+++..+.+..++||+|.|++-+.-.. .+. ..+ ...+|++..-+|.....-+.-+++|..++
T Consensus 421 ~l~~-----~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 495 (529)
T PLN02520 421 AVGG-----QALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIV 495 (529)
T ss_pred HhCC-----ceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeEe
Confidence 3210 011111111223346899999887655321 111 112 35689999999974334444577888776
Q ss_pred c
Q psy14499 185 P 185 (262)
Q Consensus 185 P 185 (262)
.
T Consensus 496 ~ 496 (529)
T PLN02520 496 S 496 (529)
T ss_pred C
Confidence 3
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0045 Score=59.42 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 46 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 46 ~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
+.+.+.++ ++.+++|+|+|+|.+|+.+++.|...|+.-|.+++ -+.++..++.++.+. .....+
T Consensus 169 ~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~----------rs~~ra~~la~~~g~-----~~i~~~ 232 (417)
T TIGR01035 169 ELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIAN----------RTYERAEDLAKELGG-----EAVKFE 232 (417)
T ss_pred HHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEe----------CCHHHHHHHHHHcCC-----eEeeHH
Confidence 33334433 47899999999999999999999999944343777 355555555444321 001111
Q ss_pred CCccccccCceEEeeCCc--cCcccccchhcc-----CceEEEecCCCC-CCHHH
Q psy14499 126 DSKEFWSIPCDILIPAAI--EDQITINNANNV-----TAKIILEGANGP-TTTEA 172 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~--~~~it~e~a~~~-----~~kiIve~AN~p-~t~ea 172 (262)
+..+.+ .++||+|.|+. ..+++.+..... +..++++.++.. +.|+.
T Consensus 233 ~l~~~l-~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 233 DLEEYL-AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred HHHHHH-hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 122233 48999999975 466777666553 233899999532 45554
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0029 Score=57.33 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=95.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.|+|+|++|+.+++.|.+.|.+|+ +.| .+++++.+..+. + ....++..++. .+||+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~d----------r~~~~~~~~~~~-g-------~~~~~~~~~~~-~~aDivi 60 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTT----------IGPEVADELLAA-G-------AVTAETARQVT-EQADVIF 60 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CcccCCHHHHH-hcCCEEE
Confidence 58899999999999999999999987 666 455665554432 2 11112133444 5899999
Q ss_pred eCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccccc-------------chhh--
Q psy14499 140 PAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITN-------------AGGV-- 194 (262)
Q Consensus 140 paa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN-------------~GGv-- 194 (262)
.|-+......+. ...+ ..++|++..+... +.+..+.++++|+.++.-.+.- .||-
T Consensus 61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~ 140 (291)
T TIGR01505 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQA 140 (291)
T ss_pred EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHH
Confidence 997754222211 1222 3568887665543 2345677888998877533320 0110
Q ss_pred -HHHHHHHHhhhcC-CCC----CHHHH----HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 195 -IVSYFEWVQNLSN-LLW----TEQEI----NLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 195 -i~s~~E~~~~~~~-~~~----~~~~v----~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
.-...++++.... ..+ ...+. ...+.......+.+.+..+++.|+++.+....+.
T Consensus 141 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 141 VFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 0011112222111 110 11111 2222223334478888899999999988776654
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00086 Score=56.65 Aligned_cols=96 Identities=19% Similarity=0.275 Sum_probs=69.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
...++|++.++. +++.+..++++++|+|+|.|. +|..++++|.+.|++|+ +++++ .++
T Consensus 22 ~~~p~~~~a~v~----l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~----------~~~------ 80 (168)
T cd01080 22 GFIPCTPAGILE----LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSK----------TKN------ 80 (168)
T ss_pred CccCChHHHHHH----HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECC----------chh------
Confidence 456777777655 455556789999999999998 59999999999999866 77642 111
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEecCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.+ .++||+|-|+.. ++++.+..+. ..+|++.|..+
T Consensus 81 ----------------l~~~l-~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 81 ----------------LKEHT-KQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred ----------------HHHHH-hhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 11223 478999988864 6788776543 46888888755
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0016 Score=62.38 Aligned_cols=106 Identities=14% Similarity=0.276 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.+|.|++|.|+|+|++|+.+|+.+..+|.+|+ ..|... . ...+ +.+...+.++++
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~-~~d~~~----------~------~~~~------~~~~~~~l~ell- 201 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVY-FYDIED----------K------LPLG------NARQVGSLEELL- 201 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCCc----------c------cccC------CceecCCHHHHH-
Confidence 346899999999999999999999999999998 444210 0 0000 111222255666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
..||+++-+.+. +.++.+....++ ..+++.-+-+++ ..+ ..+.|++..+.
T Consensus 202 ~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 202 AQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred hhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 479999877653 567777777774 668999999987 433 45777776664
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00052 Score=62.73 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=99.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c-CceE
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I-PCDI 137 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~-~~DI 137 (262)
+|.++|+|++|+.+++.|.+.|..|+ +.| .+.+++.+..+. | .+..++++++.+ . .+|+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~d----------r~~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~adv 62 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYD----------VNQEAVDVAGKL-G-------ITARHSLEELVSKLEAPRT 62 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHC-C-------CeecCCHHHHHHhCCCCCE
Confidence 79999999999999999999999987 777 456665555432 2 222222445543 2 2799
Q ss_pred EeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHHH
Q psy14499 138 LIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVSY 198 (262)
Q Consensus 138 lipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s~ 198 (262)
++-|.+.+....+. ...+ +-++|++.++... +.+..+.++++|+.++--.+. -.||=- ..
T Consensus 63 Vi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~-~~ 141 (299)
T PRK12490 63 IWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDK-EI 141 (299)
T ss_pred EEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCH-HH
Confidence 99887765333222 2223 3468888877643 455667888999988743322 112211 11
Q ss_pred HH----HHhhhcC----CCC----C----HHHHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHH
Q psy14499 199 FE----WVQNLSN----LLW----T----EQEINLRLNNIICNAFDAIWELANTKK--VSLRTAAFIIG 249 (262)
Q Consensus 199 ~E----~~~~~~~----~~~----~----~~~v~~~l~~~~~~~~~~v~~~a~~~~--~~~r~aa~~~a 249 (262)
++ +++.... ..+ . ..-+...+...+-..+.+.+..+++.+ +++.+...++.
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 12 2222211 111 0 112333444455566778888888888 88777665543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0009 Score=61.13 Aligned_cols=95 Identities=16% Similarity=0.306 Sum_probs=71.1
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+.. ++++.+.+++|++|+|+|.|+ ||+-++.+|.+.|++|+ +++++. -|
T Consensus 137 ~~PcTp~ai~~----ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t-------~~---------- 194 (286)
T PRK14175 137 FVPCTPLGIME----ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS-------KD---------- 194 (286)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc-------hh----------
Confidence 45788888754 556778999999999999988 99999999999999988 777531 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEecCCCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.. .++||+|-|... +.++++..+ ...+|++.+.++
T Consensus 195 ---------------l~~~~-~~ADIVIsAvg~p~~i~~~~vk--~gavVIDvGi~~ 233 (286)
T PRK14175 195 ---------------MASYL-KDADVIVSAVGKPGLVTKDVVK--EGAVIIDVGNTP 233 (286)
T ss_pred ---------------HHHHH-hhCCEEEECCCCCcccCHHHcC--CCcEEEEcCCCc
Confidence 11122 478999988764 578877653 246888887766
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0018 Score=63.88 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ . .+.+.. ... +.+..+ .++++
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~-~~d~-------~-~~~~~~----~~~-------g~~~~~-l~ell- 192 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVI-AYDP-------Y-ISPERA----AQL-------GVELVS-LDELL- 192 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EECC-------C-CChhHH----Hhc-------CCEEEc-HHHHH-
Confidence 346899999999999999999999999999988 4442 1 122211 111 122233 55666
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
..||+++-|.+. ++++.+....+ +..+++.-+-+++ ..+ ..+.|++.-|.
T Consensus 193 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 193 ARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 489999988764 56666666666 3558888888887 444 45777766553
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00063 Score=60.53 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=105.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc---cccC-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF---WSIP- 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i---l~~~- 134 (262)
+++-++|+|.+|.++++.|.+.|..|| +.| +|+.++.+++... ++..++.+++ |..+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD----------~n~~av~~~~~~g--------a~~a~sl~el~~~L~~pr 61 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVV-GYD----------VNQTAVEELKDEG--------ATGAASLDELVAKLSAPR 61 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEE-EEc----------CCHHHHHHHHhcC--------CccccCHHHHHHhcCCCc
Confidence 356789999999999999999999999 777 7888887777643 1111112222 2111
Q ss_pred -ceEEeeCC-ccCcccccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhHHHHH----------
Q psy14499 135 -CDILIPAA-IEDQITINNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIVSYF---------- 199 (262)
Q Consensus 135 -~DIlipaa-~~~~it~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~---------- 199 (262)
.=+.+|++ +++.+-.+-++.+ ...+|++|.|... +..-.+.|+++||.++ =.-.|||+--.-.
T Consensus 62 ~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~fl--D~GTSGG~~G~~~G~~lMiGG~~ 139 (300)
T COG1023 62 IVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFL--DVGTSGGVWGAERGYCLMIGGDE 139 (300)
T ss_pred EEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEE--eccCCCCchhhhcCceEEecCcH
Confidence 23556776 5555555566666 4569999999988 4444578999999998 5566788732110
Q ss_pred ---HHHhh--------hcCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHhh--cCCCHHHHHHHH
Q psy14499 200 ---EWVQN--------LSNLLWT--------EQEINLRLNNIICNAFDAIWELANT--KKVSLRTAAFII 248 (262)
Q Consensus 200 ---E~~~~--------~~~~~~~--------~~~v~~~l~~~~~~~~~~v~~~a~~--~~~~~r~aa~~~ 248 (262)
|-+.. ..++-+. -.-|...+|+-|-+++.+=++.-++ ++.++.+.|-+.
T Consensus 140 ~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 140 EAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred HHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 00000 0000000 1124556677777777776666654 567787777553
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=62.39 Aligned_cols=96 Identities=22% Similarity=0.320 Sum_probs=61.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc---------------
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------------- 121 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~--------------- 121 (262)
.||+|-|||.+|+.+++.+.+.+ ..||+|.|. .|++-+..+.+..+....|++.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I 72 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGI 72 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceE
Confidence 58999999999999999998864 999999983 3555444433322212223211
Q ss_pred eecC--CCccc--cccCceEEeeCCccCcccccchhcc----CceEEEecC
Q psy14499 122 EKIN--DSKEF--WSIPCDILIPAAIEDQITINNANNV----TAKIILEGA 164 (262)
Q Consensus 122 ~~~~--~~~~i--l~~~~DIlipaa~~~~it~e~a~~~----~~kiIve~A 164 (262)
+... +++.+ -+...||+++|++... +.+++.++ .+|-|+-+|
T Consensus 73 ~v~~~~~p~~l~w~d~gvdiVve~Tg~f~-~~e~~~~hl~agGaKkV~isa 122 (335)
T COG0057 73 KVLAERDPANLPWADLGVDIVVECTGKFT-GREKAEKHLKAGGAKKVLISA 122 (335)
T ss_pred EEEecCChHHCCccccCccEEEECCCCcc-chhhHHHHHHhcCCCEEEEcC
Confidence 1111 12232 2467899999997655 88888853 256554444
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00055 Score=66.72 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=103.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~D 136 (262)
.+|.|+|.|++|.++|+.|.+.|++|. +.| .+.++..++.+....- ++ ..+..++++++.+ .++|
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~-g~-~i~~~~s~~e~v~~l~~~d 68 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYN----------RTYEKTEEFVKKAKEG-NT-RVKGYHTLEELVNSLKKPR 68 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHhhhhc-CC-cceecCCHHHHHhcCCCCC
Confidence 379999999999999999999999977 777 5777766665431110 11 0111222445543 2689
Q ss_pred EEeeCCccCccccc----chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHH
Q psy14499 137 ILIPAAIEDQITIN----NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVS 197 (262)
Q Consensus 137 Ilipaa~~~~it~e----~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s 197 (262)
+++-|-+......+ ..+.+ ..++|+++.|... |.+..+.++++||.++=-.+. -.||=-.
T Consensus 69 ~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~- 147 (470)
T PTZ00142 69 KVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKE- 147 (470)
T ss_pred EEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHH-
Confidence 77777443333322 33334 4679999999854 566678889999999733332 1223211
Q ss_pred HHHHHhh----hcC-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHH
Q psy14499 198 YFEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 248 (262)
Q Consensus 198 ~~E~~~~----~~~-------~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~-~~~~~~r~aa~~~ 248 (262)
.++.++. ... ..| --.-|...++.-+-..+.+.++.++ +.++++.+.+.+.
T Consensus 148 a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 148 AYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred HHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 1222221 100 011 0123445566666677777888886 5788877765443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=61.36 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 44 IGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 44 ~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+++.+.+.++. +.+++|+|+|+|.+|+.+++.|...|+..|.++| .++++..++.++.+. ....
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~----------r~~~ra~~la~~~g~-----~~~~ 228 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIAN----------RTYERAEELAKELGG-----NAVP 228 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHcCC-----eEEe
Confidence 34444444443 7899999999999999999999998876666888 567776666665432 0111
Q ss_pred cCCCccccccCceEEeeCCccCcccccchhc----c--CceEEEecCCCC-CCHH
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQITINNANN----V--TAKIILEGANGP-TTTE 171 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it~e~a~~----~--~~kiIve~AN~p-~t~e 171 (262)
+++..+.+ .++||+|.|+..... .+.... . +-++|++-++.+ +.|+
T Consensus 229 ~~~~~~~l-~~aDvVi~at~~~~~-~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 229 LDELLELL-NEADVVISATGAPHY-AKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred HHHHHHHH-hcCCEEEECCCCCch-HHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 11112223 479999999985543 111111 1 345888888643 3444
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00042 Score=52.08 Aligned_cols=88 Identities=23% Similarity=0.296 Sum_probs=59.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC---CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC-CCccccccCc
Q psy14499 60 KISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-DSKEFWSIPC 135 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g---~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-~~~~il~~~~ 135 (262)
||.|+|+|++|.++++-|.+.| .+|.-+++ -+++++.++.++.+ ..... +..++.+ ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~----------r~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~a 62 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS----------RSPEKAAELAKEYG-------VQATADDNEEAAQ-EA 62 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE----------SSHHHHHHHHHHCT-------TEEESEEHHHHHH-HT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc----------CcHHHHHHHHHhhc-------cccccCChHHhhc-cC
Confidence 6889999999999999999999 88875546 57888888877654 11111 1345554 89
Q ss_pred eEEeeCCccCcccccchhc----cCceEEEecCCC
Q psy14499 136 DILIPAAIEDQITINNANN----VTAKIILEGANG 166 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~----~~~kiIve~AN~ 166 (262)
||++.|-.+..+.+ .+.+ .+.++|+.-+|+
T Consensus 63 dvvilav~p~~~~~-v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 63 DVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp SEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEESTT
T ss_pred CEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCCC
Confidence 99999987655532 2222 256677766553
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=57.92 Aligned_cols=112 Identities=5% Similarity=0.091 Sum_probs=73.3
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc
Q psy14499 43 IIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG 121 (262)
Q Consensus 43 ~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~ 121 (262)
.+++.+.+.++. ++.+++|+|+|.|.+|+.+++.|...|++-|.|++ -+.++...+.++.+... . ..
T Consensus 250 ~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n----------Rs~era~~La~~~~g~~-i-~~ 317 (519)
T PLN00203 250 AAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN----------RSEERVAALREEFPDVE-I-IY 317 (519)
T ss_pred HHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe----------CCHHHHHHHHHHhCCCc-e-Ee
Confidence 344555556664 68999999999999999999999999975444766 35666666655432110 0 00
Q ss_pred eecCCCccccccCceEEeeCCc--cCcccccchhccC--------ceEEEecCCCC
Q psy14499 122 EKINDSKEFWSIPCDILIPAAI--EDQITINNANNVT--------AKIILEGANGP 167 (262)
Q Consensus 122 ~~~~~~~~il~~~~DIlipaa~--~~~it~e~a~~~~--------~kiIve~AN~p 167 (262)
..+++..+.+ .++||+|-|+. ..+++.+....+. -+++++-|...
T Consensus 318 ~~~~dl~~al-~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 318 KPLDEMLACA-AEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred ecHhhHHHHH-hcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 1111112233 58999999974 4677887776652 24899888764
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00089 Score=61.16 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=71.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.|+|.|++|..+++.|.+.|.+|+ +.| .+.+++.++.+.. ....+++.+.. .+||++|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d----------~~~~~~~~~~~~g--------~~~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFD----------VNPQAVDALVDKG--------ATPAASPAQAA-AGAEFVI 62 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CcccCCHHHHH-hcCCEEE
Confidence 79999999999999999999999876 667 4666665554431 11122133444 5899999
Q ss_pred eCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 140 PAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 140 paa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
-|-+.+....+ ..+.+ +.++|++....+. +.+..+.+.++|+.++
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l 117 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM 117 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence 99876532111 12223 4568888777764 4666788899998877
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0038 Score=56.79 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 38 GRGVFIIGSKIASKINL--NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~--~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
++|...+++ ..+. ++++++++|+|.|.++++++..|.+.|++-+.|+++ +.++..++.++.+..
T Consensus 107 ~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------t~~ka~~La~~~~~~ 172 (282)
T TIGR01809 107 WDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------NPDKLSRLVDLGVQV 172 (282)
T ss_pred HHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------CHHHHHHHHHHhhhc
Confidence 566666664 3452 578999999999999999999999999866668773 455555554432211
Q ss_pred cCCCCceecCCCc---cccccCceEEeeCCccCc-ccccchh---------cc-CceEEEecCCCCCCHHHHHHHHHCCC
Q psy14499 116 KDFNEGEKINDSK---EFWSIPCDILIPAAIEDQ-ITINNAN---------NV-TAKIILEGANGPTTTEADDILRDKGI 181 (262)
Q Consensus 116 ~~~~~~~~~~~~~---~il~~~~DIlipaa~~~~-it~e~a~---------~~-~~kiIve~AN~p~t~ea~~~l~~rgi 181 (262)
. ....++..+ ..+ .++|++|-|++.+. ++.+... ++ +..++++....|......+.-+++|.
T Consensus 173 ~---~~~~~~~~~~~~~~~-~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~ 248 (282)
T TIGR01809 173 G---VITRLEGDSGGLAIE-KAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGW 248 (282)
T ss_pred C---cceeccchhhhhhcc-cCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCC
Confidence 0 111121011 222 47999999987543 3333221 11 24588999998874344455578888
Q ss_pred eEe
Q psy14499 182 ILA 184 (262)
Q Consensus 182 ~~i 184 (262)
.++
T Consensus 249 ~~~ 251 (282)
T TIGR01809 249 RVI 251 (282)
T ss_pred EEE
Confidence 776
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0045 Score=58.89 Aligned_cols=119 Identities=13% Similarity=0.219 Sum_probs=74.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC----CccCCC-CceecCC
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR----SIKDFN-EGEKIND 126 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g----~~~~~~-~~~~~~~ 126 (262)
|.++.|++|.|+|+|++|+.+|+.|. .+|++|+ ..|... + ..+....+..+ .....+ +.+...+
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~-~~d~~~--------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ--------S-TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCC--------c-hhhhhhhhhhcccccccccccccccccCC
Confidence 34689999999999999999999985 8999988 445321 0 11111000110 000000 0111222
Q ss_pred CccccccCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 127 SKEFWSIPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++++ ..+||++-+.+. +.|+.+....++ ..+++.-+-+++ . +...+.|++.-+.
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 45666 479999987553 577777777785 669999999997 3 3345777765553
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=61.51 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.++||.|+|+|++|+.+|+.|..+|++|.++ |....- ..+.+ .+. ...+.++++ .
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~~--~~~~~---------------~~~---~~~~l~e~l-~ 189 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRKS--WPGVQ---------------SFA---GREELSAFL-S 189 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCCC--CCCce---------------eec---ccccHHHHH-h
Confidence 3689999999999999999999999999999844 421100 00110 000 011134455 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
+||+++-|-+. +.++.+....++ ..+++.-+-+++ .. +..+.|++.-+.
T Consensus 190 ~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 190 QTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred cCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 89999988764 445555566664 569999999997 33 345777776554
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.032 Score=51.03 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 38 GRGVFIIGSKIASKIN--LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g--~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
++|+..+ ++..+ .+.++++++|.|.|-.+++++..|.+.|++=+.|.+ -+.++..++.+..+..
T Consensus 108 ~~G~~~~----L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt~~ra~~La~~~~~~ 173 (283)
T COG0169 108 GIGFLRA----LKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RTRERAEELADLFGEL 173 (283)
T ss_pred HHHHHHH----HHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHhhhc
Confidence 4555444 44433 466899999999999999999999999964333776 3566655555443322
Q ss_pred cCCCCceecCCCcccccc-CceEEeeCCccCccccc---chh--cc-CceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 116 KDFNEGEKINDSKEFWSI-PCDILIPAAIEDQITIN---NAN--NV-TAKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~-~~DIlipaa~~~~it~e---~a~--~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
..+..... ..++-.. ++|++|.|++-+.-..+ +.+ .+ +..++.+-.-.|. ||=. +.-+++|..++
T Consensus 174 ~~~~~~~~---~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL-~~A~~~G~~~i 246 (283)
T COG0169 174 GAAVEAAA---LADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLL-REARAQGAKTI 246 (283)
T ss_pred cccccccc---ccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHH-HHHHHcCCeEE
Confidence 11101111 1122222 69999999987655432 122 22 6779999999997 6554 44478887654
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0097 Score=53.98 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=94.6
Q ss_pred EEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCC
Q psy14499 63 IQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 142 (262)
Q Consensus 63 IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa 142 (262)
++|+|++|..+++.|.+.|.+|+ +.| .+.+++.++.+. | ....+++.+.. .++|+++-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFD----------LFPDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 47999999999999999999876 666 456665555442 1 12222233444 4799999887
Q ss_pred ccCcccc-------cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc-------------cchhhHHHH-
Q psy14499 143 IEDQITI-------NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT-------------NAGGVIVSY- 198 (262)
Q Consensus 143 ~~~~it~-------e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a-------------N~GGvi~s~- 198 (262)
+...... +....+ +-++|++...... +.+..+.++++|+.++--.+. -.||--..+
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~ 140 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFA 140 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHH
Confidence 7533211 222233 3467777775443 344557778899998864333 123322111
Q ss_pred --HHHHhhhcC-CCC----CHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 199 --FEWVQNLSN-LLW----TEQEINLRLNNI----ICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 199 --~E~~~~~~~-~~~----~~~~v~~~l~~~----~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
..+++.... ..+ ...+....+.+. .-..+.+.+..+++.|+++.+....+.
T Consensus 141 ~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 141 AAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 122221111 111 122333322222 233577888899999999887665544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.026 Score=52.33 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEE
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIV 85 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv 85 (262)
|++++|+|+|+|++|+++++.|.+.|.+++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Vi 30 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVI 30 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEE
Confidence 578999999999999999999999998876
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=59.10 Aligned_cols=109 Identities=18% Similarity=0.284 Sum_probs=69.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|.+|+.+++.|.+.|.+|+ +.| .+.+.+.+..+. + ....++.+++. .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d----------~~~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYD----------RNPEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 589999999999999999999999887 656 355555444332 1 12222234444 489999
Q ss_pred eeCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccc
Q psy14499 139 IPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDV 187 (262)
Q Consensus 139 ipaa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~ 187 (262)
+.|.+......+ ..+.+ .-++|++...... +.+..+.+.++|+.++...
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 999875332221 12333 3568887766543 2345667788898776433
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=60.09 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.+||.|+|||++|+.+++.|... ++.+++|.|+ ++++..+.... ...+++.++++..+
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~----------~~~~~~~~~~~---------~~~~~~l~~ll~~~ 62 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN----------AADLPPALAGR---------VALLDGLPGLLAWR 62 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC----------CHHHHHHhhcc---------CcccCCHHHHhhcC
Confidence 57999999999999999988653 4788888773 34333333221 22344456777789
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHH
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l 176 (262)
+|+++|||....+-+--.+-+ .+.+|+-....-..++..+.|
T Consensus 63 ~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l 106 (267)
T PRK13301 63 PDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARL 106 (267)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHH
Confidence 999999998776643222222 455666554444444444333
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.019 Score=52.31 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++ ..+.++++++++|.|.|.+|++++..|.+.|++-|.|.+++ ++ ..+++.+..++... .
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~-----~~--~~~~a~~l~~~l~~--~ 176 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK-----DD--FYERAEQTAEKIKQ--E 176 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-----ch--HHHHHHHHHHHHhh--c
Confidence 556555554 44567889999999999999999999999999744477631 00 01333333222110 0
Q ss_pred CCC--ce--ecCCCccccc--cCceEEeeCCccCcccc---cch---hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE--GE--KINDSKEFWS--IPCDILIPAAIEDQITI---NNA---NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~--~~--~~~~~~~il~--~~~DIlipaa~~~~it~---e~a---~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. .. .+++.+++.. ..+|++|-|++-+.-.. .+. ..+ +..+|++....|.....-+.-+++|..++
T Consensus 177 ~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 256 (289)
T PRK12548 177 VPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCKTV 256 (289)
T ss_pred CCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCeee
Confidence 111 11 1111112211 36799999998655321 112 223 34589999999974333445578898776
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.031 Score=53.70 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
.++..-.++.+++|+|+|.|.+|+.+++.|.+.|+.-+.|+.+ +.++...+.++.+.. ....+++.
T Consensus 171 la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------t~~ra~~La~~~~~~----~~~~~~~l 236 (414)
T PRK13940 171 LAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------TIEKAQKITSAFRNA----SAHYLSEL 236 (414)
T ss_pred HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------CHHHHHHHHHHhcCC----eEecHHHH
Confidence 3333334588999999999999999999999999866668874 345555555543210 11112211
Q ss_pred ccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCC
Q psy14499 128 KEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p 167 (262)
.+.+ .++||+|-|+.. .+++.+.... +-.++++-|...
T Consensus 237 ~~~l-~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPR 276 (414)
T PRK13940 237 PQLI-KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQ 276 (414)
T ss_pred HHHh-ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCC
Confidence 2233 479999999864 6667655432 345888888754
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00045 Score=55.76 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=56.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
...||.|+|.|+||.++++.|.+.|+.|++|.. -+.....+..+.. +.....+ ..+++ .++|
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s----------rs~~sa~~a~~~~------~~~~~~~-~~~~~-~~aD 70 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYS----------RSPASAERAAAFI------GAGAILD-LEEIL-RDAD 70 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESS----------CHH-HHHHHHC--------TT------TTGGG-CC-S
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe----------CCccccccccccc------ccccccc-ccccc-ccCC
Confidence 457999999999999999999999999998865 2333333332221 1222233 55565 4899
Q ss_pred EEeeCCccCcccccchhcc-------CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 137 ILIPAAIEDQITINNANNV-------TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~-------~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+++-|.+-+.|.+ .+.++ +-++|+=-+... +-+.-+-++++|..+
T Consensus 71 lv~iavpDdaI~~-va~~La~~~~~~~g~iVvHtSGa~-~~~vL~p~~~~Ga~~ 122 (127)
T PF10727_consen 71 LVFIAVPDDAIAE-VAEQLAQYGAWRPGQIVVHTSGAL-GSDVLAPARERGAIV 122 (127)
T ss_dssp EEEE-S-CCHHHH-HHHHHHCC--S-TT-EEEES-SS---GGGGHHHHHTT-EE
T ss_pred EEEEEechHHHHH-HHHHHHHhccCCCCcEEEECCCCC-hHHhhhhHHHCCCeE
Confidence 9999988776642 22222 344555444322 223233346666544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.033 Score=50.96 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++ ..+.++++++++|.|.|..+++++-.|...|++-+.|.+++- + ..++..++.++.+. .
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~-----~--~~~ka~~la~~~~~--~ 174 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD-----E--FFDKALAFAQRVNE--N 174 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc-----c--HHHHHHHHHHHhhh--c
Confidence 556555554 457788999999999999999999999999986665877421 0 13344444432211 0
Q ss_pred CCC-ceecCCCcc---cc--ccCceEEeeCCccCcccc--c-c---hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE-GEKINDSKE---FW--SIPCDILIPAAIEDQITI--N-N---ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~-~~~~~~~~~---il--~~~~DIlipaa~~~~it~--e-~---a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. ....+ .++ +. ..++|++|.|++-+.-.. + . ...+ ...+|++...+|.....-+.-+++|..++
T Consensus 175 ~~~~~~~~~-~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 253 (288)
T PRK12749 175 TDCVVTVTD-LADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTI 253 (288)
T ss_pred cCceEEEec-hhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEE
Confidence 100 11111 111 11 137899999998655321 1 1 1123 34588899999874444455578998886
Q ss_pred cc
Q psy14499 185 PD 186 (262)
Q Consensus 185 PD 186 (262)
+-
T Consensus 254 ~G 255 (288)
T PRK12749 254 DG 255 (288)
T ss_pred CC
Confidence 43
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.027 Score=51.44 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++. .+.++++++++|.|.|.++++++-.|.+.|++-+.|.+ -+.++..++.++.. ..
T Consensus 111 ~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~n----------R~~~ka~~La~~~~--~~ 174 (283)
T PRK14027 111 VSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVAD----------LDTSRAQALADVIN--NA 174 (283)
T ss_pred HHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEc----------CCHHHHHHHHHHHh--hc
Confidence 5666666652 33467789999999999999999999999986666887 35665555544311 01
Q ss_pred CCC--ceecC--CCccccccCceEEeeCCccCccccc--c--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNE--GEKIN--DSKEFWSIPCDILIPAAIEDQITIN--N--ANNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~--~~~~~--~~~~il~~~~DIlipaa~~~~it~e--~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++. ....+ +..+.+ .++|++|.|++-+.-..+ + ...+ ...+|.+....|.....-+.-+++|..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 249 (283)
T PRK14027 175 VGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL 249 (283)
T ss_pred cCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence 111 01111 001122 368999999986543221 1 1122 35589999999874334455588898776
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0035 Score=59.30 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-cc-CCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IK-DFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~-~~~~~~~~~~~~~il~~ 133 (262)
+.+.+|+|+|+|.+|+.+++.|..+|++|+ +.| .+++++.++....+. +. .+..... ..+.+ .
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d----------~~~~~~~~l~~~~g~~v~~~~~~~~~---l~~~l-~ 229 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILD----------INIDRLRQLDAEFGGRIHTRYSNAYE---IEDAV-K 229 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHhcCceeEeccCCHHH---HHHHH-c
Confidence 567889999999999999999999999866 777 456665554443322 10 0000000 11223 4
Q ss_pred CceEEeeCCc------cCcccccchhccC-ceEEEe
Q psy14499 134 PCDILIPAAI------EDQITINNANNVT-AKIILE 162 (262)
Q Consensus 134 ~~DIlipaa~------~~~it~e~a~~~~-~kiIve 162 (262)
++||+|.|+. ...++.+....++ ..+|++
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 8999999862 3457888887774 346766
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=63.99 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=76.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCceE
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCDI 137 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~DI 137 (262)
.|.|+|+|++|+++|+.|.+.|++|+ +.| .+.+++.++.++...-. +....++..++.. .++|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~-v~d----------rt~~~~~~l~~~~~~g~---~~~~~~s~~e~v~~l~~~dv 66 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVS-VYN----------RTPEKTDEFLAEHAKGK---KIVGAYSIEEFVQSLERPRK 66 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEE-EEe----------CCHHHHHHHHhhccCCC---CceecCCHHHHHhhcCCCCE
Confidence 37899999999999999999999977 767 56777766665421100 0111121333332 36898
Q ss_pred EeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhh
Q psy14499 138 LIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 138 lipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
++-|-+.+....+. .+.+ .-++|+++.|.-. |.+..+.++++|+.++--.+. ||.
T Consensus 67 Iil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVs--GG~ 128 (467)
T TIGR00873 67 IMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVS--GGE 128 (467)
T ss_pred EEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCC--CCH
Confidence 88776654333333 2333 4679999999643 555567789999999854444 554
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0036 Score=48.60 Aligned_cols=108 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|..|+...+.+.+. +.++++|+| .|+++..+..++.+ ...+++.+++++ .++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d----------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCD----------PDPERAEAFAEKYG-------IPVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEEC----------SSHHHHHHHHHHTT-------SEEESSHHHHHHHTTE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEe----------CCHHHHHHHHHHhc-------ccchhHHHHHHHhhcC
Confidence 4899999999999999877765 689999999 67777766655542 224444566775 579
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEe
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILA 184 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~i 184 (262)
|+++-|++... +.+.+... +..+++|=.=.....+++++ .+++|+.+.
T Consensus 64 D~V~I~tp~~~-h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 64 DAVIIATPPSS-HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp SEEEEESSGGG-HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred CEEEEecCCcc-hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 99999997633 44444443 45688885443333444433 366776653
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=63.08 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhCC----------CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 42 FIIGSKIASKINL----------NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 42 ~~~~~~~~~~~g~----------~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+.++..+.+++++ ...+.+|+|+|.|.+|..++..+...|++|+ ++| .+++++....+-
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D----------~~~~rle~aesl 207 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFD----------TRPEVAEQVESM 207 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc
Confidence 4555666665543 2358999999999999999999999999765 778 677776555442
Q ss_pred cCCcc--CCCC--------ceecCCCc------cccc---cCceEEeeCCcc------CcccccchhccC--ceEEEecC
Q psy14499 112 TRSIK--DFNE--------GEKINDSK------EFWS---IPCDILIPAAIE------DQITINNANNVT--AKIILEGA 164 (262)
Q Consensus 112 ~g~~~--~~~~--------~~~~~~~~------~il~---~~~DIlipaa~~------~~it~e~a~~~~--~kiIve~A 164 (262)
..... +..+ .+..+ .+ +.+. .++||+|+|+.. ..++++..+.++ ..+|-=|.
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s-~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMS-EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCeEEEeccccccccccchhhhcc-hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 22211 1000 00111 11 1111 369999999973 245777777774 33333222
Q ss_pred ----CCCCCHHHHHHHHHCCCeEe
Q psy14499 165 ----NGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 165 ----N~p~t~ea~~~l~~rgi~~i 184 (262)
|.+++.....++..+||.++
T Consensus 287 ~~GG~~e~t~~~~~v~~~~gVti~ 310 (509)
T PRK09424 287 ENGGNCELTVPGEVVVTDNGVTII 310 (509)
T ss_pred CCCCCcccccCccceEeECCEEEE
Confidence 22344333344344777664
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=63.12 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=103.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc---CCccCCCCceecCCCccccc--c
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT---RSIKDFNEGEKINDSKEFWS--I 133 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~---g~~~~~~~~~~~~~~~~il~--~ 133 (262)
.+|.++|+|++|+.+|+.|.+.|++|+ |.| .+.++..++.+.. |. .. ....+++.++.+ .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~N----------Rt~~k~~~l~~~~~~~Ga-~~---~~~a~s~~e~v~~l~ 71 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYN----------RTTSKVDETVERAKKEGN-LP---LYGFKDPEDFVLSIQ 71 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EEC----------CCHHHHHHHHHhhhhcCC-cc---cccCCCHHHHHhcCC
Confidence 479999999999999999999999987 877 5677766655421 21 00 011122344442 2
Q ss_pred CceEEeeCCccCcccc----cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhh
Q psy14499 134 PCDILIPAAIEDQITI----NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGV 194 (262)
Q Consensus 134 ~~DIlipaa~~~~it~----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGv 194 (262)
.+|+++-|=+.+.... ...+.+ ..++|+++.|... |.+..+.++++|+.++=-.+. -.||=
T Consensus 72 ~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~ 151 (493)
T PLN02350 72 KPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGS 151 (493)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCC
Confidence 5899987744332222 223334 5779999999964 667778899999998833222 22332
Q ss_pred HHHHHHHHhh----hcC-------CCC--------CHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHH
Q psy14499 195 IVSYFEWVQN----LSN-------LLW--------TEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFI 247 (262)
Q Consensus 195 i~s~~E~~~~----~~~-------~~~--------~~~~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~ 247 (262)
-. .+|-++. ... ..| -..-|...++..+-..+.+.+..+++ .|+++.+...+
T Consensus 152 ~~-a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 152 FE-AYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred HH-HHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 11 1222211 110 111 01234455666666777778888887 58887776655
|
|
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.01 Score=53.82 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
-|+|..+..++..++++|++|++.+|+|+|. |.++..+|+.|.-++.+..=+
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll 197 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELL 197 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEe
Confidence 6899999999999999999999999999998 999999999999887766533
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0026 Score=59.27 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=68.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLF-FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L-~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
+.++.|++|.|+|+|++|+.+|+.| ..+|.+|+ ..|.+. .... ... .+..++.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~-~~d~~~----------~~~~---~~~--------~~~~~~l~ell 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVV-AYDPFP----------NAKA---ATY--------VDYKDTIEEAV 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCc----------cHhH---Hhh--------ccccCCHHHHH
Confidence 3468999999999999999999999 56899987 445321 1100 000 11111144555
Q ss_pred ccCceEEeeCCccCcccc-----cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCC
Q psy14499 132 SIPCDILIPAAIEDQITI-----NNANNV-TAKIILEGANGPT--TTEADDILRDKGI 181 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~-----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi 181 (262)
.++|+++-|.+....|. +....+ +..+++..+-+.+ +.+..+.|++..|
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCe
Confidence 48999999887654443 334444 3559999999987 4445577766555
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0068 Score=50.16 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D 89 (262)
++|+|.|||.+|+.+++.+.+ .+..++++.|
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 479999999999999998875 6899999988
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.079 Score=48.10 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..+++ ..+.+ .+++++|.|.|..+++++-.|.+.|++-+.|++ -+.++..++.+..+
T Consensus 107 ~~Gf~~~L~----~~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~n----------R~~~~a~~la~~~~---- 167 (272)
T PRK12550 107 YIAIAKLLA----SYQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVA----------RNEKTGKALAELYG---- 167 (272)
T ss_pred HHHHHHHHH----hcCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCHHHHHHHHHHhC----
Confidence 566666664 33554 356999999999999999999999987555887 35566555544321
Q ss_pred CCCceecCCCccccccCceEEeeCCccCccccc-----ch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITIN-----NA--NNV-TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e-----~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+ . +. +.+...++|++|-|++-+..... +. ..+ +..+|++....|......+.-+++|..++
T Consensus 168 ~---~-~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i 236 (272)
T PRK12550 168 Y---E-WR--PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVI 236 (272)
T ss_pred C---c-ch--hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEe
Confidence 1 0 10 11222468999999986554211 11 112 34589999999874444455588898876
|
|
| >KOG1370|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0017 Score=59.72 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
+.|+-++|.|+|.||.+.|..|..+|++|+ |+. +||--.+...-+ +.++.. .++.. .+.
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTE----------iDPI~ALQAaMe--------G~~V~t-m~ea~-~e~ 270 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTE----------IDPICALQAAME--------GYEVTT-LEEAI-REV 270 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-Eec----------cCchHHHHHHhh--------ccEeee-HHHhh-hcC
Confidence 578999999999999999999999999998 887 776443333222 223333 44444 488
Q ss_pred eEEeeCCc-cCcccccchhccCce-EEE
Q psy14499 136 DILIPAAI-EDQITINNANNVTAK-IIL 161 (262)
Q Consensus 136 DIlipaa~-~~~it~e~a~~~~~k-iIv 161 (262)
||||-++. .|+|+++..++++-. ||+
T Consensus 271 difVTtTGc~dii~~~H~~~mk~d~IvC 298 (434)
T KOG1370|consen 271 DIFVTTTGCKDIITGEHFDQMKNDAIVC 298 (434)
T ss_pred CEEEEccCCcchhhHHHHHhCcCCcEEe
Confidence 99999986 699999999888544 444
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0017 Score=60.25 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=70.7
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
+|.++.|+++.|.|||.+|+.+|+.+...|.++++ .| | +.+.+..+.+ +.+.++ .+++|
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~-~d-------p--i~~~~~~~a~----------gvq~vs-l~Eil 198 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG-YD-------P--ITPMALAEAF----------GVQLVS-LEEIL 198 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe-ec-------C--CCchHHHHhc----------cceeee-HHHHH
Confidence 46688999999999999999999999999999883 23 2 4454433322 334445 66777
Q ss_pred ccCceEE---eeCCc--cCcccccchhcc-CceEEEecCCCCC--CHHHHHHHH
Q psy14499 132 SIPCDIL---IPAAI--EDQITINNANNV-TAKIILEGANGPT--TTEADDILR 177 (262)
Q Consensus 132 ~~~~DIl---ipaa~--~~~it~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~ 177 (262)
..+|.+ +|.++ ++.++.+.-.++ +.--|+..|.+.+ ++...+.|.
T Consensus 199 -~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~ 251 (406)
T KOG0068|consen 199 -PKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD 251 (406)
T ss_pred -hhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh
Confidence 356655 35554 488888877777 3446677777766 454455543
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0031 Score=56.96 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=66.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+| +|.+|+.+++.+.+ .++++++++|+...-. .|-|..++.... .+ +...+++.+++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~~-------~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGIG-------KV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCcC-------cC-CceeeCCHHHh-cCCCC
Confidence 5899999 69999999999876 6899999999422111 123333321110 01 12223323444 45799
Q ss_pred EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHH----HHCCCeEe
Q psy14499 137 ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDIL----RDKGIILA 184 (262)
Q Consensus 137 Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l----~~rgi~~i 184 (262)
|+|+|+.+....+ ..+-+.+..+|++-. .+|++..+.| ++.|+.++
T Consensus 71 vVIdfT~p~~~~~~~~~al~~g~~vVigtt--g~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 71 VLIDFTTPEGVLNHLKFALEHGVRLVVGTT--GFSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHHHhcCCccEE
Confidence 9999996644322 223333567888775 4666543333 45554443
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0065 Score=55.50 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.++|..||. +++++.+.+++|++|+|+|-| .||+-++.+|.+.|+.|+ +++++- ..|.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs~t----------~~l~----- 195 (285)
T PRK14191 136 FVPATPMGVM----RLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHILT----------KDLS----- 195 (285)
T ss_pred CCCCcHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeCCc----------HHHH-----
Confidence 4578888774 566777899999999999999 899999999999999987 776411 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+.. ..+||+|-|.. .+.++++..+ ...+|++.+
T Consensus 196 -----------------~~~-~~ADIvV~AvG~p~~i~~~~vk--~GavVIDvG 229 (285)
T PRK14191 196 -----------------FYT-QNADIVCVGVGKPDLIKASMVK--KGAVVVDIG 229 (285)
T ss_pred -----------------HHH-HhCCEEEEecCCCCcCCHHHcC--CCcEEEEee
Confidence 111 47888888875 4777776663 233555544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0084 Score=53.44 Aligned_cols=170 Identities=12% Similarity=0.105 Sum_probs=86.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEE--EEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKI--VAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~v--v~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|..+ +.++| -+.++..++.+..+ +.+..++..++. .++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r~~~~~~~l~~~~~------~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------RNAQIAARLAERFP------KVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------CCHHHHHHHHHHcC------CceEeCCHHHHH-HhCC
Confidence 37999999999999999999887533 33555 25566555544321 122223234444 4799
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHH-HHHHHHH--CCCeEeccccc-cchhhHH--HHHHHHhh---
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTE-ADDILRD--KGIILAPDVIT-NAGGVIV--SYFEWVQN--- 204 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~e-a~~~l~~--rgi~~iPD~~a-N~GGvi~--s~~E~~~~--- 204 (262)
+++-|.....+ .+....+ +-++|+.-+ .+++.+ ..+.+.. +-+.++|-.-. ...|++. ...++++.
T Consensus 64 vVilav~p~~~-~~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~ 141 (258)
T PRK06476 64 VVFLAVRPQIA-EEVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD 141 (258)
T ss_pred EEEEEeCHHHH-HHHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence 99999875433 2222222 345666655 455444 3444432 22334443211 1122211 11122221
Q ss_pred -hcCCCC--CHHHHHH------HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 205 -LSNLLW--TEQEINL------RLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 205 -~~~~~~--~~~~v~~------~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
.....| ++++... .....+ ..+....+.+.+.|++..+|-.++
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~-~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASALMATYF-GILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred hcCCcEEECChHhccceeehhccHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222 1222111 223333 456666777788888887665444
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=59.32 Aligned_cols=140 Identities=12% Similarity=0.159 Sum_probs=86.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----cc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SI 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~ 133 (262)
..+|+|.|||.+|+.+++.|.+.|..++ +.| .|++.+.+..+. |.-.-|-+++ ..+++ -.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDat----~~~~L~~agi~ 463 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRIT-VLE----------RDISAVNLMRKY-GYKVYYGDAT----QLELLRAAGAE 463 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhC-CCeEEEeeCC----CHHHHHhcCCc
Confidence 3589999999999999999999999988 778 688887766543 2111111221 12233 14
Q ss_pred CceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe-ccccccchhhHHHHHHHHhhhcC
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA-PDVITNAGGVIVSYFEWVQNLSN 207 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i-PD~~aN~GGvi~s~~E~~~~~~~ 207 (262)
++|.+|-+...+..|- ..++++ ..++|+-+. +++..+.|++.|+..+ |+-+..+--.. -+.+. .
T Consensus 464 ~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~l~l~---~~~L~---~ 533 (601)
T PRK03659 464 KAEAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSALELG---RKTLV---S 533 (601)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHHHHHH---HHHHH---H
Confidence 8999998877644443 234443 456666443 4677788999998654 66555322211 11222 2
Q ss_pred CCCCHHHHHHHHHHHH
Q psy14499 208 LLWTEQEINLRLNNII 223 (262)
Q Consensus 208 ~~~~~~~v~~~l~~~~ 223 (262)
...+++++.+.+++.-
T Consensus 534 lg~~~~~~~~~~~~~r 549 (601)
T PRK03659 534 LGMHPHQAQRAQQHFR 549 (601)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3346677766665553
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0047 Score=57.78 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=58.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC----------CC--CceecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD----------FN--EGEKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~----------~~--~~~~~~ 125 (262)
.||+|.|||.+|+.+++.+.+ .++.+++|+|+ +++....+.+..| ..- +. +.....
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~----------~~~~~~~la~~~G-~~~~~~~~~~~~~~~~~~i~V~~ 70 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKT----------KPDYEARVAVEKG-YPLYVADPEREKAFEEAGIPVAG 70 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECC----------ChHHHHHHHHhcC-CCccccCccccccccCCceEEcC
Confidence 589999999999999999876 57999999983 3332222222221 100 11 111112
Q ss_pred CCccccccCceEEeeCCccCcccccchhcc---CceEEEecCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGAN 165 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN 165 (262)
+.++++ .++|++++|+... .+.+++... ++++|..+..
T Consensus 71 ~~~el~-~~vDVVIdaT~~~-~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 71 TIEDLL-EKADIVVDATPGG-VGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred ChhHhh-ccCCEEEECCCch-hhHHHHHHHHHCCCEEEEcCCC
Confidence 233444 4799999999654 555555544 6788888753
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0025 Score=59.47 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=54.5
Q ss_pred EEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC--CccCCCC---------ceecCCCc
Q psy14499 61 ISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR--SIKDFNE---------GEKINDSK 128 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g--~~~~~~~---------~~~~~~~~ 128 (262)
|+|.|||.+|+.+++.+.+ .+.++|+|+| .|++....+....+ +...++. .....+.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD----------~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTK----------TSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEec----------CChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 5899999999999999865 5799999999 56664333333222 1111111 01111244
Q ss_pred cccccCceEEeeCCccCcccccchhcc---CceEEEec
Q psy14499 129 EFWSIPCDILIPAAIEDQITINNANNV---TAKIILEG 163 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~ 163 (262)
+++ .++|++++|++ ...+.+++..+ ++|.|+-+
T Consensus 71 eLl-~~vDiVve~Tp-~~~~~~na~~~~~~GakaVl~~ 106 (333)
T TIGR01546 71 DLL-EKVDIVVDATP-GGIGAKNKPLYEKAGVKAIFQG 106 (333)
T ss_pred HHh-hcCCEEEECCC-CCCChhhHHHHHhCCcCEEEEC
Confidence 565 57999999985 33444444443 55544433
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.005 Score=56.31 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=76.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
.+|+++|+|++|...|+.|.+.|+.+. |.| .++++..+...+.| ++..+++.+.. .++||+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~----------r~~~ka~~~~~~~G-------a~~a~s~~eaa-~~aDvV 61 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYN----------RTPEKAAELLAAAG-------ATVAASPAEAA-AEADVV 61 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEe----------CChhhhhHHHHHcC-------CcccCCHHHHH-HhCCEE
Confidence 479999999999999999999999987 888 67777444443322 33333232333 588999
Q ss_pred eeCCc-----cCcccccc--hhcc-CceEEEecCCCC-C-CHHHHHHHHHCCCeEeccccccchhh
Q psy14499 139 IPAAI-----EDQITINN--ANNV-TAKIILEGANGP-T-TTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 139 ipaa~-----~~~it~e~--a~~~-~~kiIve~AN~p-~-t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
|-|=+ ..++.+++ +..+ +.+++++-.... . +.+..+.++++|+.++=-.+. ||+
T Consensus 62 itmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVs--Gg~ 125 (286)
T COG2084 62 ITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVS--GGV 125 (286)
T ss_pred EEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCcc--CCc
Confidence 87643 23333322 2222 466777776664 3 567778889999999865555 555
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=53.01 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=69.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++|.++|+|++|+++++-|.+.|. .|+ ++| .+.+++.++.++.| .+..++..++. .
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~----------r~~~~~~~l~~~~g-------~~~~~~~~e~~-~ 62 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSD----------LNVSNLKNASDKYG-------ITITTNNNEVA-N 62 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEE-EEC----------CCHHHHHHHHHhcC-------cEEeCCcHHHH-h
Confidence 3589999999999999999998874 344 666 35666666554333 22222234444 4
Q ss_pred CceEEeeCCccCcccc---cchhccCc-eEEEecCCCCCCHHHHHHHHH--CCCeEeccccc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVTA-KIILEGANGPTTTEADDILRD--KGIILAPDVIT 189 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~~-kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~~a 189 (262)
+|||+|-|-.+..+.. +..+.++. ++|+.-+-+-...+..+.|.. +=+.++|..-+
T Consensus 63 ~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~ 124 (272)
T PRK12491 63 SADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPV 124 (272)
T ss_pred hCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHH
Confidence 8999999887643322 22222332 477777776665666666632 34566666544
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0016 Score=54.63 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=27.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+...+|+|.|.|+||+++++.|..+|++++ +.|
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d 50 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPD 50 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEE
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-ecc
Confidence 567899999999999999999999999988 666
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.014 Score=53.25 Aligned_cols=92 Identities=24% Similarity=0.317 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||. +++++.+.+++|++|+|+|.+ .||+.++.+|...|++|+ +++++- ..|
T Consensus 131 ~~PcTp~av~----~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~t----------~~L------ 189 (279)
T PRK14178 131 FAPCTPNGIM----TLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSKT----------ENL------ 189 (279)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecCh----------hHH------
Confidence 4678888875 456677999999999999998 899999999999999987 766421 111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
.+.. .++||+|-|.. .+.++++..+ ...+|++-+
T Consensus 190 ----------------~~~~-~~ADIvI~Avgk~~lv~~~~vk--~GavVIDVg 224 (279)
T PRK14178 190 ----------------KAEL-RQADILVSAAGKAGFITPDMVK--PGATVIDVG 224 (279)
T ss_pred ----------------HHHH-hhCCEEEECCCcccccCHHHcC--CCcEEEEee
Confidence 1122 47889998876 6888887763 234666655
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0088 Score=58.87 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--------C--ceecC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--------E--GEKIN 125 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--------~--~~~~~ 125 (262)
..+.+|+|+|+|.+|..++..+...|++|+ +.| .+..++...++-......++ + ++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d----------~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFD----------TRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcCCeEEeccccccccccccceeecC
Confidence 356899999999999999999999999966 777 34554433332111110000 0 12222
Q ss_pred CCccc------c---ccCceEEeeCC------ccCcccccchhccCc-eEEEec
Q psy14499 126 DSKEF------W---SIPCDILIPAA------IEDQITINNANNVTA-KIILEG 163 (262)
Q Consensus 126 ~~~~i------l---~~~~DIlipaa------~~~~it~e~a~~~~~-kiIve~ 163 (262)
.+.. + -.++||+|.|+ .+.++|++..+.++. -+|++-
T Consensus 231 -~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 231 -EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 1111 2 15799999998 234688888888852 355543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=54.56 Aligned_cols=93 Identities=16% Similarity=0.340 Sum_probs=56.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc-CCCC------------ce
Q psy14499 60 KISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK-DFNE------------GE 122 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~-~~~~------------~~ 122 (262)
||+|.|||.+|+.+++.|.+. +..|++|.| +...+.+.+..++.+.- .|++ .+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd----------~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~ 70 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE----------LADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGD 70 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec----------CCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCe
Confidence 589999999999999999875 389999988 33334444444433321 1210 11
Q ss_pred ---ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEec
Q psy14499 123 ---KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEG 163 (262)
Q Consensus 123 ---~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~ 163 (262)
.. .+++++ | +.++|++++|+... .+.+.+... .|+.|.-.
T Consensus 71 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~-~s~e~a~~~l~aGa~~V~~S 120 (325)
T TIGR01532 71 CIRVLHSPTPEALPWRALGVDLVLDCTGVY-GNREQGERHIRAGAKRVLFS 120 (325)
T ss_pred EEEEEEcCChhhccccccCCCEEEEccchh-ccHHHHHHHHHcCCeEEEec
Confidence 11 023332 3 46999999999754 555555544 45644444
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0046 Score=55.73 Aligned_cols=107 Identities=11% Similarity=0.184 Sum_probs=63.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
+||+|+|+|++|+.+++.|.+. +..+++|++... ...+..+.... +...+++.+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~--------~~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEH--------SIDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCC--------CHHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 5899999999999999998875 788888875211 11111111110 12223334455 668999
Q ss_pred EeeCCccCcccccchhcc---CceEEEecCCCCCC-----HHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQITINNANNV---TAKIILEGANGPTT-----TEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it~e~a~~~---~~kiIve~AN~p~t-----~ea~~~l~~rgi~~i 184 (262)
+++|+..... .+.+... +..++++.. +.++ ++..+..+++|..+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~-~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISV-GALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeCh-HHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999987644 4444443 345665432 2222 333455567786654
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0069 Score=55.32 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=67.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
+|.++|.|++|+.+++.|.+.|..++ +.|. ++. ..++.+ .| ....+++.++. .+||+++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~----------~~~-~~~~~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTI----------GPV-ADELLS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeC----------CHh-HHHHHH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 69999999999999999999999876 6662 332 222222 22 22222233444 5899999
Q ss_pred eCCccCc-----cccc--chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccc
Q psy14499 140 PAAIEDQ-----ITIN--NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 140 paa~~~~-----it~e--~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~ 188 (262)
-|-+.+. +.++ -+..+ +.++|++-..... +.+..+.+.++|+.++--.+
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV 119 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 8866432 1111 12222 4567887765532 45566888899998885544
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.02 Score=51.78 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=67.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|.|.+|+.++..|.+.|.+|+ +.| .+.+.+.+..+. +.+.. .++..+.+ .+||++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d----------~~~~~~~~a~~~-g~~~~------~~~~~~~~-~~aDlV 61 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVS----------RRESTCERAIER-GLVDE------ASTDLSLL-KDCDLV 61 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHC-CCccc------ccCCHhHh-cCCCEE
Confidence 379999999999999999999999877 556 355555544432 22211 11012233 589999
Q ss_pred eeCCccCcccc---cchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEec-cccccc--hhhHHHHHH
Q psy14499 139 IPAAIEDQITI---NNANNVT-AKIILEGANGPTTTEADDILRDKGIILAP-DVITNA--GGVIVSYFE 200 (262)
Q Consensus 139 ipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~iP-D~~aN~--GGvi~s~~E 200 (262)
|.|.+...+.. +..+.++ ..+|.+.+- +.++..+.+.+....+++ -++++. .|+..+...
T Consensus 62 ilavp~~~~~~~~~~l~~~l~~~~ii~d~~S--vk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~ 128 (279)
T PRK07417 62 ILALPIGLLLPPSEQLIPALPPEAIVTDVGS--VKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRG 128 (279)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEeCcc--hHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHH
Confidence 99998654422 2222233 235554333 233333444444333554 345443 345444433
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=53.59 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=76.6
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+.+.+.. ...++|.|+|.|..|+..++.+.. ++.+-|.|.+ .++++..++.++.... +. .....++
T Consensus 116 a~~~La~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~----------Rs~~~a~~~a~~~~~~-g~-~~~~~~~ 182 (314)
T PRK06141 116 AASYLAR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWG----------RDPAKAEALAAELRAQ-GF-DAEVVTD 182 (314)
T ss_pred HHHHhCC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHHhc-CC-ceEEeCC
Confidence 3444443 367899999999999999987665 5655454777 4666666665542211 10 1222332
Q ss_pred CccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 127 SKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.++.+ .++||++-|+... +++.+..+. .+-+..-+++.|...|....+.+++..|+
T Consensus 183 ~~~av-~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~v 240 (314)
T PRK06141 183 LEAAV-RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYV 240 (314)
T ss_pred HHHHH-hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEE
Confidence 33444 4899999887643 233333322 34577788888888888777778886555
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0097 Score=54.92 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=67.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC------ceecCCCcccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEKINDSKEFW 131 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~------~~~~~~~~~il 131 (262)
.++|+|+|.|++|..++..|.+.|..|. +.+ -+.+.+..+.+.......+++ ....+++.+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~----------r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWA----------RRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4589999999999999999999999877 555 244444444332111111111 12222233333
Q ss_pred ccCceEEeeCCccCcccccchhccC-ceEEEecCCCCC-----CHHHHHHHHH---CCCeE
Q psy14499 132 SIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT-----TTEADDILRD---KGIIL 183 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~-----t~ea~~~l~~---rgi~~ 183 (262)
.++|+++.|.....+ .+..+.++ ..+|+...|+-. .....+.+.+ +++.+
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~ 131 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV 131 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE
Confidence 589999999887653 44445553 347777788521 2334455555 66543
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0067 Score=56.41 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.|++++|+|+|+|++|+..|+.|...|.+|+ +.|
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~Vi-V~~ 46 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVV-VGV 46 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEE-EEE
Confidence 4799999999999999999999999999998 443
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0048 Score=55.51 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=67.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
++|.|+|+|++|+.+++.|.+.|. ..+.++| -+.+.+..+.++. ++.....+..++. .++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~----------r~~~~~~~~~~~~------~g~~~~~~~~~~~-~~a 63 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITN----------RTPAKAYHIKERY------PGIHVAKTIEEVI-SQS 63 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCHHHHHHHHHHc------CCeEEECCHHHHH-HhC
Confidence 369999999999999999999884 2344666 3555554444332 1222222233444 489
Q ss_pred eEEeeCCccCcccc---cchhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 136 DILIPAAIEDQITI---NNANNV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 136 DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
|+++-|.....+.+ +..+.+ +.++|+.-+|+-...+..+.+..+.+.++|.
T Consensus 64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~ 118 (273)
T PRK07680 64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPS 118 (273)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCC
Confidence 99999986544321 122233 3468888887654444455555455677774
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=54.48 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHH-CCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK-AGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~-~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.|++-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.+ .|. +++ +.++ +..++.++.++.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R----------~~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR----------QQERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC----------CHHHHHHHHHHh
Confidence 4667777788888888999999999999998 8999999999975 464 555 5552 344444444332
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCcc--C-cccccchhccCceEEEecCCCC-CCHHH
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--D-QITINNANNVTAKIILEGANGP-TTTEA 172 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~-~it~e~a~~~~~kiIve~AN~p-~t~ea 172 (262)
. .....+ .++.+ .++|+++-++.. . .++.+..+ +..++++.|.-. +.|+.
T Consensus 202 ~------~~~i~~-l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v 255 (340)
T PRK14982 202 G------GGKILS-LEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKV 255 (340)
T ss_pred c------cccHHh-HHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCccc
Confidence 1 111112 23344 479999988753 3 26665443 556899998764 45543
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0078 Score=53.16 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=64.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|.+|..+++++.+- .++.++|+| -|.++..++.+..+. ... ++.++++ .+.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D----------~~~ek~~~~~~~~~~------~~~-s~ide~~-~~~D 62 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYD----------RDEEKAKELEASVGR------RCV-SDIDELI-AEVD 62 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEec----------CCHHHHHHHHhhcCC------Ccc-ccHHHHh-hccc
Confidence 4789999999999999988753 689999999 466776665543321 111 2245666 7999
Q ss_pred EEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHH
Q psy14499 137 ILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l 176 (262)
++++||..+.+-+---+.+ .+.+|+=.-..-..|+....|
T Consensus 63 lvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl 104 (255)
T COG1712 63 LVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERL 104 (255)
T ss_pred eeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHH
Confidence 9999998766543322223 234444444333356655444
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.018 Score=58.14 Aligned_cols=111 Identities=17% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc----c
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS----I 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~----~ 133 (262)
..+|+|.|||.+|+.+++.|.+.|..++ +.| .|++.+.+..+. |.-.-|-+++ ..++++ .
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID----------~d~~~v~~~~~~-g~~v~~GDat----~~~~L~~agi~ 463 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLD----------HDPDHIETLRKF-GMKVFYGDAT----RMDLLESAGAA 463 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEE----------CCHHHHHHHHhc-CCeEEEEeCC----CHHHHHhcCCC
Confidence 4689999999999999999999999988 668 688887776543 2111111221 122331 3
Q ss_pred CceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe-cccc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA-PDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i-PD~~ 188 (262)
++|.+|-|...+..|. ..++++ +.++|+=+. +++..+.|++.|+..+ |...
T Consensus 464 ~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~----d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 464 KAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR----DVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC----CHHHHHHHHHCCCCEEehhhH
Confidence 7899998886544443 344444 345666432 4566788899998765 4443
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=51.28 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=84.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|+.=...+--.+.+++.. ...++++|+|.|..|+..++.+.. .+.+-+.|.| .+.++..++.+
T Consensus 100 d~~~lT~~RTaA~sala~~~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~a~ 168 (304)
T PRK07340 100 DGPTVTGRRTAAVSLLAARTLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRG----------RTAASAAAFCA 168 (304)
T ss_pred cChhHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEc----------CCHHHHHHHHH
Confidence 33444544333333334444443 367899999999999999999975 6777676877 56777666665
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
+.... ++ ... .++.++.+ .++||++-|+.. -+++.. -+-.+-++.=|++.|-..|.+..+..+- .++-|.
T Consensus 169 ~~~~~-~~-~~~-~~~~~~av-~~aDiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 169 HARAL-GP-TAE-PLDGEAIP-EAVDLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred HHHhc-CC-eeE-ECCHHHHh-hcCCEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 43321 11 111 22234445 499999999874 444442 2335668888999998777665555554 344344
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0063 Score=55.60 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=43.0
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|-+|+... +++.+.+++|++|+|+|.|. ||+.++.+|.+.|++|+ |+++
T Consensus 139 ~p~T~~gii~~----L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~ 191 (283)
T PRK14192 139 GSATPAGIMRL----LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS 191 (283)
T ss_pred cCCcHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 45777766554 45578899999999999998 99999999999999655 8874
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.096 Score=47.26 Aligned_cols=100 Identities=17% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++|.++|.|++|+++++.|.+.| ..++ ++|+ . +.+.+..+.++.+ .+..+++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r-------~--~~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNR-------S--NETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECC-------C--CHHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4579999999999999999999887 4444 5552 1 1233444443322 22222133343
Q ss_pred cCceEEeeCCccCcccc---cchhccC-ceEEEecCCCCCCHH-HHHH
Q psy14499 133 IPCDILIPAAIEDQITI---NNANNVT-AKIILEGANGPTTTE-ADDI 175 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~e-a~~~ 175 (262)
.+|||+|-|-.+..+.+ +....++ .++|+.-+++- +++ ..+.
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~ 110 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNL 110 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHH
Confidence 47899998877644332 1112232 35788876654 344 4443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0061 Score=52.74 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998555588854
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.013 Score=54.73 Aligned_cols=102 Identities=8% Similarity=0.149 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC
Q psy14499 41 VFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120 (262)
Q Consensus 41 v~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~ 120 (262)
+..+...+++.. .++.+++|.|+|.|.+|+-+++.|.+.|++-+.|+.++-.. .+.+.+ .
T Consensus 158 v~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~--------------~ 217 (338)
T PRK00676 158 IESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV--------------V 217 (338)
T ss_pred HHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh--------------h
Confidence 333334444554 46899999999999999999999999997655588764311 000000 0
Q ss_pred ceecCCCccccccCceEEeeC-----CccCcccccchhccCceEEEecCCCC
Q psy14499 121 GEKINDSKEFWSIPCDILIPA-----AIEDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 121 ~~~~~~~~~il~~~~DIlipa-----a~~~~it~e~a~~~~~kiIve~AN~p 167 (262)
.+.+ ++ ..++||+|-| ++...++.+.......+++++-|+..
T Consensus 218 ~~~~----~~-~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 218 REEL----SF-QDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred hhhh----hc-ccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 0001 12 2588999965 45577777776665557999999865
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0029 Score=55.92 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD 58 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLID 58 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 35789999999999999999999999987676877
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=51.73 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=59.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++++|.|.||+|.++++.|...|+.|+ |..++ +++++....+..+. ..+..+ +++.. ..+||+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r---------~~~~~~a~a~~l~~-----~i~~~~-~~dA~-~~aDVV 64 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSR---------GPKALAAAAAALGP-----LITGGS-NEDAA-ALADVV 64 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCC---------ChhHHHHHHHhhcc-----ccccCC-hHHHH-hcCCEE
Confidence 578999999999999999999999998 65432 34555555443321 122222 22222 469999
Q ss_pred eeCCccCccc---ccchhccCceEEEecCCC
Q psy14499 139 IPAAIEDQIT---INNANNVTAKIILEGANG 166 (262)
Q Consensus 139 ipaa~~~~it---~e~a~~~~~kiIve~AN~ 166 (262)
+.+-+-..+. .+..+.++-|||++..|.
T Consensus 65 vLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 65 VLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred EEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 9876643332 334444567999999995
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.037 Score=51.44 Aligned_cols=109 Identities=13% Similarity=0.263 Sum_probs=67.0
Q ss_pred CeEEEEcCCHHHH-HHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGS-VAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|.+|+ ..+..+.. .++++++|+| .|.++.. ++ |++...+++.++++. .+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d----------~~~~~~~---~~------~~~~~~~~~~~ell~~~~v 65 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSS----------SDATKVK---AD------WPTVTVVSEPQHLFNDPNI 65 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEEC----------CCHHHHH---hh------CCCCceeCCHHHHhcCCCC
Confidence 6999999999998 45676655 4799999999 4555432 11 222333444667774 579
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccc
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~ 187 (262)
|+++-|++.. .+.+.+... ...++||=.=.....|++++ .+++|+.+...+
T Consensus 66 D~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~ 122 (346)
T PRK11579 66 DLIVIPTPND-THFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFH 122 (346)
T ss_pred CEEEEcCCcH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEe
Confidence 9999988753 355544443 34466653222223445443 367787775444
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.055 Score=47.43 Aligned_cols=101 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC---E-EEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA---K-IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~---~-vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.+||.|+|.|++|+.+++.|.+.+. + ++ +++. -+.+++.++.++.+ ....++.++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~~~- 64 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNR---------SNVEKLDQLQARYN-------VSTTTDWKQHV- 64 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECC---------CCHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence 46799999999999999999988762 3 33 3331 13455555554332 12222244455
Q ss_pred cCceEEeeCCccCcccccchhc----cCceEEEecCCCCCCHHHHHHH
Q psy14499 133 IPCDILIPAAIEDQITINNANN----VTAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~----~~~kiIve~AN~p~t~ea~~~l 176 (262)
.++|+++-|.+...+ .+.+.+ ++-++|+..+.+-......+.+
T Consensus 65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERL 111 (245)
T ss_pred hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHc
Confidence 489999999887544 333333 2446777777664434333433
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=53.87 Aligned_cols=104 Identities=16% Similarity=0.295 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
-++.|+||.|.|+|.+|+.+|+.|..+|..+. -+.. ....++...++- .+.++ .++.+ .
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r-------~~~~~~~~~~~~-----------~~~~d-~~~~~-~ 216 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSR-------TQLPPEEAYEYY-----------AEFVD-IEELL-A 216 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccceee-eecc-------cCCchhhHHHhc-----------ccccC-HHHHH-h
Confidence 46899999999999999999999999994443 2221 112222222221 11223 44555 6
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHH
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRD 178 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~ 178 (262)
++|+++-|-+. +++|.+....++ .-+||..|-+++ ..++ .+.|++
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 89999988664 556666666664 558999999997 4444 355444
|
|
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.017 Score=47.99 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=34.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.||+|.|||.+|+.+++.+.. ....+++|.|. +.|++.+.-+.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~--------~~~~~~~a~Llk 45 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDP--------APDPEYLAYLLK 45 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEES--------SSSHHHHHHHHH
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecc--------cccchhhhhhhh
Confidence 489999999999999999874 57999999884 236666544443
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0053 Score=52.18 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=45.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH----------hcCCccC------CCCcee
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT----------FTRSIKD------FNEGEK 123 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~----------~~g~~~~------~~~~~~ 123 (262)
+|+|+|.|.+|+.+|..+...|+.|+ +.| .|.+.+.+..+ +.+.+.. +...+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d----------~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~ 69 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYD----------RSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF 69 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-----------SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEE----------CChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc
Confidence 68999999999999999999999988 877 45554433322 1222220 001112
Q ss_pred cCCCccccccCceEEeeCCccCccc
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQIT 148 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it 148 (262)
.++.+++. +||++|+|.+++.--
T Consensus 70 ~~dl~~~~--~adlViEai~E~l~~ 92 (180)
T PF02737_consen 70 TTDLEEAV--DADLVIEAIPEDLEL 92 (180)
T ss_dssp ESSGGGGC--TESEEEE-S-SSHHH
T ss_pred ccCHHHHh--hhheehhhccccHHH
Confidence 22222332 999999999876543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0085 Score=55.15 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+. +++++.|.+++|++|+|+|-| .||+.++.+|.+.|+.|+ ++++
T Consensus 138 ~~PcTp~aii----~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~ 191 (301)
T PRK14194 138 LTPCTPSGCL----RLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHS 191 (301)
T ss_pred CCCCcHHHHH----HHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECC
Confidence 3578888774 556677999999999999996 999999999999999988 7764
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=54.23 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNV-GSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~V-G~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ .+++++.+++++|++|+|+|.+++ |+-++.+|.++|++|+ ++++
T Consensus 137 ~~PcTp~ai----i~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 137 FRPCTPYGV----MKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred CcCCCHHHH----HHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 457888777 456677899999999999999886 9999999999999988 6553
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=54.12 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||+ +++++.+.+++|++++|+|-++ ||+-++.+|.+.|++|+ +|+++- -|
T Consensus 138 ~~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~T-------~~---------- 195 (285)
T PRK10792 138 LRPCTPRGIM----TLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRFT-------KN---------- 195 (285)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECCC-------CC----------
Confidence 3578888875 4556678999999999999999 99999999999999987 877531 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
..+.. ..+||+|-|.. .+.++.+..+. ..+|++.+
T Consensus 196 ---------------l~~~~-~~ADIvi~avG~p~~v~~~~vk~--gavVIDvG 231 (285)
T PRK10792 196 ---------------LRHHV-RNADLLVVAVGKPGFIPGEWIKP--GAIVIDVG 231 (285)
T ss_pred ---------------HHHHH-hhCCEEEEcCCCcccccHHHcCC--CcEEEEcc
Confidence 11122 47888888874 46777765542 34666655
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=53.99 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=45.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||.. ++++.+.++.|++|+|+|-++ ||+-++.+|.+.|++|+ +|++
T Consensus 143 ~~PcTp~av~~----ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs 196 (287)
T PRK14176 143 LVPCTPHGVIR----ALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHV 196 (287)
T ss_pred CCCCcHHHHHH----HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEec
Confidence 45788888754 556678999999999999999 99999999999999987 8774
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.055 Score=50.20 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=83.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=...+---+.+.+..+ .-.++.|+|.|..|+..++.|.. .+.+.+.|+| .+.+...++.+
T Consensus 104 d~~~lT~~RTaA~sala~~~La~~-~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~----------r~~~~~~~~~~ 172 (326)
T PRK06046 104 DGTYLTDMRTGAAGGVAAKYLARK-DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYD----------RTKSSAEKFVE 172 (326)
T ss_pred cCccHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEEC----------CCHHHHHHHHH
Confidence 334455543333333334554332 56799999999999999998874 5788998988 56666655554
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
+.....++ ..+..++.++.++ +||++-|++.. +++.+..+ -.+.+..=|++-|-..|.+..+.++.- ++-|..
T Consensus 173 ~~~~~~~~-~v~~~~~~~~~l~--aDiVv~aTps~~P~~~~~~l~-~g~hV~~iGs~~p~~~El~~~~~~~a~-vvvD~~ 247 (326)
T PRK06046 173 RMSSVVGC-DVTVAEDIEEACD--CDILVTTTPSRKPVVKAEWIK-EGTHINAIGADAPGKQELDPEILLRAK-VVVDDM 247 (326)
T ss_pred HHHhhcCc-eEEEeCCHHHHhh--CCEEEEecCCCCcEecHHHcC-CCCEEEecCCCCCccccCCHHHHhCCc-EEECCH
Confidence 32110010 1222333455553 99999998752 33333332 245577788888876666555555553 444543
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=62.21 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCE------------EEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAK------------IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~------------vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+.++|+|+|.|.||+..++.|.+. ++. +|+|+| .++++..++.+....+. ....
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD----------~~~~~a~~la~~~~~~~---~v~l 634 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVAS----------LYLKDAKETVEGIENAE---AVQL 634 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEEC----------CCHHHHHHHHHhcCCCc---eEEe
Confidence 577999999999999999999874 333 577899 67777666554321110 0111
Q ss_pred -cCCCccccc--cCceEEeeCCccCcccccchhc---cCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHH-
Q psy14499 124 -INDSKEFWS--IPCDILIPAAIEDQITINNANN---VTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV- 196 (262)
Q Consensus 124 -~~~~~~il~--~~~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~- 196 (262)
+.+.+++.. .++|++|-|++.. .+.+.+.. .+..++++.-..+-+.+..+..+++|+.++|++-.+ -|+..
T Consensus 635 Dv~D~e~L~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlD-PGid~~ 712 (1042)
T PLN02819 635 DVSDSESLLKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLD-PGIDHM 712 (1042)
T ss_pred ecCCHHHHHHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccC-HHHHHH
Confidence 232445554 4799999999763 45544443 355677776211112333466688999999988743 34433
Q ss_pred HHHHHH
Q psy14499 197 SYFEWV 202 (262)
Q Consensus 197 s~~E~~ 202 (262)
...+++
T Consensus 713 lA~~~I 718 (1042)
T PLN02819 713 MAMKMI 718 (1042)
T ss_pred HHHHHH
Confidence 334444
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.015 Score=53.53 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHH-HHHHHHhcCCccCCCCceecCCCccccc--
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPK-LQKYVTFTRSIKDFNEGEKINDSKEFWS-- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~-l~~~~~~~g~~~~~~~~~~~~~~~~il~-- 132 (262)
+..+|+|+|.|++|+..+..|.+ .+..+++++| +|++. -++..++.|--.. .++.++++.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvd----------id~es~gla~A~~~Gi~~~------~~~ie~LL~~~ 66 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVG----------IDPESDGLARARRLGVATS------AEGIDGLLAMP 66 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEe----------CChhhHHHHHHHHcCCCcc------cCCHHHHHhCc
Confidence 56899999999999987766654 5799999999 67653 2233333331111 121344553
Q ss_pred --cCceEEeeCCccCcccccchhcc---CceEEEec--CCCCC
Q psy14499 133 --IPCDILIPAAIEDQITINNANNV---TAKIILEG--ANGPT 168 (262)
Q Consensus 133 --~~~DIlipaa~~~~it~e~a~~~---~~kiIve~--AN~p~ 168 (262)
.++|+++.|++. ..+.+.+... .+.+|.+. +++|+
T Consensus 67 ~~~dIDiVf~AT~a-~~H~e~a~~a~eaGk~VID~sPA~~~Pl 108 (302)
T PRK08300 67 EFDDIDIVFDATSA-GAHVRHAAKLREAGIRAIDLTPAAIGPY 108 (302)
T ss_pred CCCCCCEEEECCCH-HHHHHHHHHHHHcCCeEEECCccccCCc
Confidence 479999999964 4566666655 44455543 35565
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.004 Score=56.96 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 368899999999999999999999999877778884
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.17 Score=48.63 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-++|+|+|.|.||..+|..|.+.|..|+ +.|
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~-~~D 33 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVI-GVD 33 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEE-EEe
Confidence 4789999999999999999999999988 556
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0041 Score=55.15 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+..+|+|+|.|.||..+++.|.+.|..-+.+.|.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDF 43 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 57889999999999999999999999755557774
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.014 Score=48.96 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=39.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-.+.|..|+.. ++++.+.+++|++++|+|-++ ||+-++.+|.+.|++|. ++++
T Consensus 14 ~~~PcTp~aii~----lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~ 68 (160)
T PF02882_consen 14 GFVPCTPLAIIE----LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHS 68 (160)
T ss_dssp SS--HHHHHHHH----HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-T
T ss_pred CCcCCCHHHHHH----HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccC
Confidence 456688887754 555678999999999999975 99999999999999988 7774
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.02 Score=54.54 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=70.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C---CCcee-cC-CCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F---NEGEK-IN-DSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~---~~~~~-~~-~~~ 128 (262)
++|+|+|.|.||..+|..|. .|+.|+ +.| +|.+++.++.+..-.+.+ + ..... .+ +..
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD----------~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALD----------ILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEE----------CCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 37999999999999997776 499988 677 677776665542111100 0 00111 11 012
Q ss_pred cccccCceEEeeCCccCcccc-------cch-------hcc-CceEEE-ecCCCCC-CHHHHHHHHHCCCeEecccccc
Q psy14499 129 EFWSIPCDILIPAAIEDQITI-------NNA-------NNV-TAKIIL-EGANGPT-TTEADDILRDKGIILAPDVITN 190 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~-------e~a-------~~~-~~kiIv-e~AN~p~-t~ea~~~l~~rgi~~iPD~~aN 190 (262)
+.. .+||++|.|-++.. +. +.+ .++ +.++|+ ++.=.|- |.+..+.+.++|+.+-|.++..
T Consensus 69 ~~~-~~ad~vii~Vpt~~-~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~ 145 (388)
T PRK15057 69 EAY-RDADYVIIATPTDY-DPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLRE 145 (388)
T ss_pred hhh-cCCCEEEEeCCCCC-ccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccC
Confidence 222 58999999987652 21 111 112 234444 4444443 5566677788899999998753
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.14 Score=56.26 Aligned_cols=171 Identities=15% Similarity=0.199 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
...+|.++|+|++|..+|+.|.+.|+.+. +.| .+.++..++.+.. +...+++.++. .+||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~a-~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFE----------ISTPLMEKFCELG--------GHRCDSPAEAA-KDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHcC--------CeecCCHHHHH-hcCC
Confidence 35689999999999999999999999987 777 5677776666542 33333244444 4799
Q ss_pred EEeeCCccCcccccc-------hhcc-CceEEEecCCC-CC-CHHHHHHHHHCC--CeEeccccccchhhHH--------
Q psy14499 137 ILIPAAIEDQITINN-------ANNV-TAKIILEGANG-PT-TTEADDILRDKG--IILAPDVITNAGGVIV-------- 196 (262)
Q Consensus 137 Ilipaa~~~~it~e~-------a~~~-~~kiIve~AN~-p~-t~ea~~~l~~rg--i~~iPD~~aN~GGvi~-------- 196 (262)
++|-|-+......+. +..+ ..++|++-.-. |- +.+..+.+.++| +.++=-.+. ||+..
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVs--Gg~~~A~~G~L~i 140 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVS--KGMSDLLNGKLMI 140 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCc--CCHHHHhcCCeEE
Confidence 999876543222211 2233 34577766544 32 566678889999 877743333 33211
Q ss_pred ------HHHH----HHhhhcC-CC-C----CHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 197 ------SYFE----WVQNLSN-LL-W----TEQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 197 ------s~~E----~~~~~~~-~~-~----~~~~----v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
..+| +++.... .. . ..-. +...+...+-..+.+.+..+++.|+++.....++.
T Consensus 141 mvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 141 IASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred EEcCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1111 1111111 11 1 1112 23333444445677888889999999987776654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.089 Score=45.70 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|.||..-++.|.+.|++|+ |.+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~Vt-Vvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLR-VIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEE-EEc
Confidence 36889999999999999999999999999988 554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.022 Score=43.97 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=63.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c---cCce
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S---IPCD 136 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~---~~~D 136 (262)
|+|.|+|.+|+.+++.|.+.+.+++ +.| .|++...+..++.-.+- +.+. . ..+.| + .++|
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid----------~d~~~~~~~~~~~~~~i-~gd~--~--~~~~l~~a~i~~a~ 64 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VID----------RDPERVEELREEGVEVI-YGDA--T--DPEVLERAGIEKAD 64 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEE----------SSHHHHHHHHHTTSEEE-ES-T--T--SHHHHHHTTGGCES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEE----------CCcHHHHHHHhcccccc-cccc--h--hhhHHhhcCccccC
Confidence 6899999999999999999777888 666 47887777665431110 0011 1 11222 1 4788
Q ss_pred EEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 137 ILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 137 Ilipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
.++-++..+..|- ..++++ ..++|+..- +++..+.|++-|+..
T Consensus 65 ~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~ 112 (116)
T PF02254_consen 65 AVVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADH 112 (116)
T ss_dssp EEEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SE
T ss_pred EEEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCE
Confidence 8888877554443 344443 356666544 366667788877654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=50.91 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=53.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|.||...++.|.+.|++|+ |.+. + ++ +++.++.+. +.+.-. ...+. ... + .
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~-VIs~-------~-~~-~~l~~l~~~-~~i~~~--~~~~~-~~~-l-~ 69 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIV-VISP-------E-LT-ENLVKLVEE-GKIRWK--QKEFE-PSD-I-V 69 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEcC-------C-CC-HHHHHHHhC-CCEEEE--ecCCC-hhh-c-C
Confidence 46899999999999999999999999999988 4432 1 22 233343332 222110 00111 112 2 4
Q ss_pred CceEEeeCCccCcccccchh
Q psy14499 134 PCDILIPAAIEDQITINNAN 153 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~ 153 (262)
++|++|-|+....+|...+.
T Consensus 70 ~adlViaaT~d~elN~~i~~ 89 (202)
T PRK06718 70 DAFLVIAATNDPRVNEQVKE 89 (202)
T ss_pred CceEEEEcCCCHHHHHHHHH
Confidence 78999999877766654443
|
|
| >KOG1257|consensus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.024 Score=55.36 Aligned_cols=126 Identities=20% Similarity=0.134 Sum_probs=90.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CC-------CEEEEEeCCCceeeCCC--
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AG-------AKIVAIQDDKTTIYNPN-- 98 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g-------~~vv~V~D~~G~i~~~~-- 98 (262)
+--+.||--+.+++..++|..|.++++.+|++.|.|..|.++|+++.. .| -++- +.|++|-|....
T Consensus 284 DDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~~ 362 (582)
T KOG1257|consen 284 DDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRKA 362 (582)
T ss_pred ccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeeccccC
Confidence 446789999999999999999999999999999999999999988753 34 2444 889998887643
Q ss_pred CCCHHHHHHHHHhcCCccCCCCceecCCCcc-ccccCceEEeeCCc-cCcccccchhcc---C-ceEEEecCCCCC
Q psy14499 99 GFNIPKLQKYVTFTRSIKDFNEGEKINDSKE-FWSIPCDILIPAAI-EDQITINNANNV---T-AKIILEGANGPT 168 (262)
Q Consensus 99 GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~-il~~~~DIlipaa~-~~~it~e~a~~~---~-~kiIve~AN~p~ 168 (262)
.++..+. .+.++ .+.+.+..+ +-.++..|||.||. ++..|++..+.+ . -.+|+.-.|-..
T Consensus 363 ~l~~~~~-~fAk~---------~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~ 428 (582)
T KOG1257|consen 363 SLTEEKK-PFAKD---------HEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTS 428 (582)
T ss_pred CCChhhc-ccccc---------ChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCcc
Confidence 4544331 11111 111111333 34689999999985 799999887776 3 348888888653
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.066 Score=52.53 Aligned_cols=76 Identities=17% Similarity=0.051 Sum_probs=47.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-------hcCCccC--C--CC-ceecCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-------FTRSIKD--F--NE-GEKIND 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-------~~g~~~~--~--~~-~~~~~~ 126 (262)
++|+|+|.|++|...|..|...|..|+ +.| .+++++.+..+ ..+.+.. + .+ .+..++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~ 73 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFD----------PHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCAS 73 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCC
Confidence 489999999999999999999999987 777 35554433211 0111110 0 01 122222
Q ss_pred CccccccCceEEeeCCccCc
Q psy14499 127 SKEFWSIPCDILIPAAIEDQ 146 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~ 146 (262)
..+.+ .+||++++|.+++.
T Consensus 74 ~~ea~-~~aD~Vieavpe~~ 92 (495)
T PRK07531 74 LAEAV-AGADWIQESVPERL 92 (495)
T ss_pred HHHHh-cCCCEEEEcCcCCH
Confidence 33333 58999999988774
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.024 Score=50.52 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=54.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC----EEEEEe-CCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA----KIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~-D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
++|.++|+|++|..+++.|.+.|. .++ ++ | .+.++...+.+ .| ....++..++. .
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~----------r~~~~~~~~~~-~g-------~~~~~~~~e~~-~ 60 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADD----------SNPARRDVFQS-LG-------VKTAASNTEVV-K 60 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeC----------CCHHHHHHHHH-cC-------CEEeCChHHHH-h
Confidence 479999999999999999999887 665 54 5 34555444332 22 22222233444 4
Q ss_pred CceEEeeCCccCcccccch----hcc-CceEEEecCCCCCCHHH
Q psy14499 134 PCDILIPAAIEDQITINNA----NNV-TAKIILEGANGPTTTEA 172 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~t~ea 172 (262)
+||++|.|.....+ .+.. +.+ +.++|+.-.++ ++.+.
T Consensus 61 ~aDvVil~v~~~~~-~~vl~~l~~~~~~~~~iIs~~~g-~~~~~ 102 (266)
T PLN02688 61 SSDVIILAVKPQVV-KDVLTELRPLLSKDKLLVSVAAG-ITLAD 102 (266)
T ss_pred cCCEEEEEECcHHH-HHHHHHHHhhcCCCCEEEEecCC-CcHHH
Confidence 89999999854322 2222 222 34567765554 34443
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.09 Score=49.21 Aligned_cols=96 Identities=15% Similarity=0.298 Sum_probs=57.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccC---CC------Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKD---FN------EGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~---~~------~~~ 122 (262)
.||+|.|||.||+.+.|.|.+. ..++++|-|. .|++.+.-+. ..+|.+.. .. +.+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~ 72 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDD 72 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCE
Confidence 4899999999999999999873 5889988773 3444432222 23333221 00 111
Q ss_pred ---ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 ---KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ---~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. .+++++ | +.++|++++|+... .+.+.++.. .|| +++.++
T Consensus 73 ~i~v~~~~~p~~~~w~~~gvDiVle~tG~~-~s~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 73 AIRLLHERDIASLPWRELGVDVVLDCTGVY-GSREDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEccchh-hhHHHHHHHHHcCCEEEEecCC
Confidence 11 023332 3 47999999999654 566665544 455 555544
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.012 Score=54.82 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|+|+|+|++|+++|+.|.+.|.+|+ +.+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv-v~~ 47 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVV-VGL 47 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEE-EEE
Confidence 4789999999999999999999999999887 443
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.2 Score=54.95 Aligned_cols=169 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
.++|.++|+|++|..+|+.|...|++|+ +.| .+.+++.++.+.. +...+++.++. .+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~G--------a~~~~s~~e~~-~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYD----------VYKPTLVRFENAG--------GLAGNSPAEVA-KDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcC--------CeecCCHHHHH-hcCCE
Confidence 4789999999999999999999999887 666 5666665554431 22222233444 58999
Q ss_pred EeeCCccC-----cccc--cchhcc-CceEEEecCCCCC--CHHHHHHHHH--CCCeEeccccccchhhHH---------
Q psy14499 138 LIPAAIED-----QITI--NNANNV-TAKIILEGANGPT--TTEADDILRD--KGIILAPDVITNAGGVIV--------- 196 (262)
Q Consensus 138 lipaa~~~-----~it~--e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~--rgi~~iPD~~aN~GGvi~--------- 196 (262)
++-|-... ++.+ .....+ ..++|++-..... +.+..+.+++ +|+.++=..+. ||...
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVs--Gg~~~A~~G~L~im 461 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVS--GGVKRAAMGTLTIM 461 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCC--CChhhhhcCCceEE
Confidence 99876632 2211 122233 3457776655432 4556677788 89988843332 33210
Q ss_pred -----HHHH----HHhhhcC-CCC-----CHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 197 -----SYFE----WVQNLSN-LLW-----TEQEINL----RLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 197 -----s~~E----~~~~~~~-~~~-----~~~~v~~----~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
..++ +++.... .++ ..-+... .+....-..+.+.+..+++.|+++.+...++
T Consensus 462 vgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl 532 (1378)
T PLN02858 462 ASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDII 532 (1378)
T ss_pred EECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1122 2222111 111 1122222 2333334556778888899999987766544
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.037 Score=52.96 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=72.2
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCce
Q psy14499 45 GSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGE 122 (262)
Q Consensus 45 ~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~ 122 (262)
++.+.+.++. ++..++++|+|+|.+|+.+++.|.+.|..++ +.| .|++.+.++.++...+.-+ -+..
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid----------~~~~~~~~~~~~~~~~~~i~gd~~ 285 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIE----------RDPERAEELAEELPNTLVLHGDGT 285 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHCCCCeEEECCCC
Confidence 4444454544 5678999999999999999999999999988 666 5777776666543111100 0110
Q ss_pred ecCCCccc---cccCceEEeeCCccCccc---ccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 123 KINDSKEF---WSIPCDILIPAAIEDQIT---INNANNVT-AKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 123 ~~~~~~~i---l~~~~DIlipaa~~~~it---~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+ .+.+ --.++|.++-++..+..| ...++.+. .++|+... +++-.+.|+..|+..
T Consensus 286 --~-~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~~ 346 (453)
T PRK09496 286 --D-QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGIDI 346 (453)
T ss_pred --C-HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCCE
Confidence 1 1112 124789988776543322 23344443 34555443 334456678888744
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.022 Score=50.68 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDF 56 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367899999999999999999999999877768874
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.019 Score=53.68 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|++++|+|+|.|.+|..+|+.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4688999999999999999999999998666688864
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.051 Score=49.70 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCHHHH-HHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 57 INSKISIQGFGNVGS-VAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~-~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
+.+||+|+|+|+.+. ..+..+.+.+ +.+++++| .|++++.+..++.+-- ..+++.++++..
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d----------~~~~~a~~~a~~~~~~------~~~~~~~~ll~~ 65 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVD----------RDPERAEAFAEEFGIA------KAYTDLEELLAD 65 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEec----------CCHHHHHHHHHHcCCC------cccCCHHHHhcC
Confidence 467999999997664 5777777765 69999999 7888888887765421 233335667754
Q ss_pred -CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEecc
Q psy14499 134 -PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPD 186 (262)
Q Consensus 134 -~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD 186 (262)
+.|+++=|++ +..+.+.+..- ...++||=.=.....|++ +.-+++|+.+...
T Consensus 66 ~~iD~V~Iatp-~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~ 124 (342)
T COG0673 66 PDIDAVYIATP-NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVG 124 (342)
T ss_pred CCCCEEEEcCC-ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence 4899888886 44455544332 455777754444445554 3335567666533
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.019 Score=52.46 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+.|..||. +++++.+.+++|++|+|+|- |.||+-++.+|.+.|+.|+ ++.
T Consensus 137 ~~PcTp~avi----~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~ 189 (284)
T PRK14179 137 MIPCTPAGIM----EMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTH 189 (284)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EEC
Confidence 4678998874 45667799999999999999 9999999999999999987 664
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.084 Score=48.90 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=80.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
...|++=...+---+.+++... ..++++|+|.|..|+..++.+.. .+++-|.|.| .++++..++.++.
T Consensus 104 ~~lT~~RTaa~sala~~~la~~-~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~----------r~~~~a~~~~~~~ 172 (325)
T PRK08618 104 TYLTQIRTGALSGVATKYLARE-DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYS----------RTFEKAYAFAQEI 172 (325)
T ss_pred chhhhhhHHHHHHHHHHHhcCC-CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEEC----------CCHHHHHHHHHHH
Confidence 3445443333333334555432 67799999999999999887754 6888888888 4666655554422
Q ss_pred CCccCCC-CceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 113 RSIKDFN-EGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 113 g~~~~~~-~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
.. .++ ....+++.++.+ .++||++-|++.. +++ +-. +-.+.++.=|++.|--.|....+.++.-.++-|..
T Consensus 173 ~~--~~~~~~~~~~~~~~~~-~~aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~~ 246 (325)
T PRK08618 173 QS--KFNTEIYVVNSADEAI-EEADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVESK 246 (325)
T ss_pred HH--hcCCcEEEeCCHHHHH-hcCCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 10 011 112233234444 5899999998753 222 211 22466778888888655554444444433444543
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.022 Score=51.61 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d 31 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVD 31 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEe
Confidence 479999999999999999999999988 777
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0096 Score=53.12 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4688999999999999999999999998666688853
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.025 Score=52.02 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.++|..||.. ++++.+.+++|++|+|+| .|.||+.+|.+|.+.|+.|+ +++
T Consensus 137 ~~PcTp~ai~~----ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~ 189 (296)
T PRK14188 137 LVPCTPLGCMM----LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAH 189 (296)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EEC
Confidence 46789888754 556678899999999999 99999999999999999988 775
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.018 Score=54.84 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=79.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCC-CCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDF-NEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~-~~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|.||+.+|..|.+.| .+|+ |+| -..+++.+..+..+. +.-. .++...+...+++ .+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAd----------Rs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~ 69 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IAD----------RSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDF 69 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEe----------CCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcC
Confidence 58999999999999999999988 7877 888 466777676554321 1100 0111111012344 466
Q ss_pred eEEeeCCccCcccccchhc-cC-ceEEEecCCCCCC-HHHHHHHHHCCCeEeccccccchhhHHHHHHH
Q psy14499 136 DILIPAAIEDQITINNANN-VT-AKIILEGANGPTT-TEADDILRDKGIILAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~-~~-~kiIve~AN~p~t-~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~ 201 (262)
|++|-|++..+ +....+. ++ -..+++-+|..-. -+.++..++.|+..+|+.=. +-|++..+...
T Consensus 70 d~VIn~~p~~~-~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~-dPGi~nv~a~~ 136 (389)
T COG1748 70 DLVINAAPPFV-DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGF-DPGITNVLAAY 136 (389)
T ss_pred CEEEEeCCchh-hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCc-CcchHHHHHHH
Confidence 99999997643 3222222 12 2356666666543 44567778999999988643 34666555443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=48.75 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
|++++|+|+|||+-|.+.|..|++.|..|+ |....+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~ 37 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREG 37 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TT
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCC
Confidence 478999999999999999999999999988 766433
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.097 Score=48.58 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=82.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=....---+.+++..+ .-+++.|+|.|..|+..++.|.. ...+-|.|.| .+.++..++.+
T Consensus 103 d~~~lT~~RTaA~salaa~~La~~-~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~----------r~~~~~~~~~~ 171 (325)
T TIGR02371 103 DGTYITDMRTGAAGGVAAKYLARK-DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC----------RTPSTREKFAL 171 (325)
T ss_pred eCcchhhHHHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHH
Confidence 334445443333323334555432 56899999999999998887765 3455565777 56776655544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
+.... + ......++.++.. .++||++-|++. -+++.+.. +-.+.+..=|++.|-..|.+..+.++.- ++.|..
T Consensus 172 ~~~~~-g-~~v~~~~~~~eav-~~aDiVitaT~s~~P~~~~~~l-~~g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~ 246 (325)
T TIGR02371 172 RASDY-E-VPVRAATDPREAV-EGCDILVTTTPSRKPVVKADWV-SEGTHINAIGADAPGKQELDPEILKNAK-IFVDDL 246 (325)
T ss_pred HHHhh-C-CcEEEeCCHHHHh-ccCCEEEEecCCCCcEecHHHc-CCCCEEEecCCCCcccccCCHHHHhcCc-EEECCH
Confidence 32211 1 0122333355555 599999999864 22333322 2256688888998876666555555543 445654
Q ss_pred c
Q psy14499 189 T 189 (262)
Q Consensus 189 a 189 (262)
.
T Consensus 247 ~ 247 (325)
T TIGR02371 247 E 247 (325)
T ss_pred H
Confidence 3
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.017 Score=50.78 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDD 53 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 468899999999999999999999999877778885
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.13 Score=48.04 Aligned_cols=96 Identities=24% Similarity=0.420 Sum_probs=58.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~~---~------~~~~-- 123 (262)
.||+|.|||.+|+.+.|.+.+ ....||+|-|. .|++.+.-+. ..+|.+..- . +.+.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~ 73 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 73 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEE
Confidence 589999999999999999764 47999999873 3444432222 233433210 0 1111
Q ss_pred cC---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 IN---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 ~~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+. +++++ | +.++|++++|+.. ..+.+.+... .|| ++..++
T Consensus 74 v~~~~dp~~~~w~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 74 VTAERDPANLKWDEVGVDVVAEATGL-FLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred EEEcCChhhCcccccCCCEEEEecch-hhcHHHHHHHHHCCCEEEEeCCC
Confidence 11 23332 3 4699999999964 4666666554 566 444544
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=56.28 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=65.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----ccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~~ 134 (262)
-+++|.|+|++|+.+++.|.+.|..++ +.| -|++++.+.++..-.. -+-+++ ..+.+ -.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId----------~d~~~~~~~~~~g~~~-i~GD~~----~~~~L~~a~i~~ 481 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIE----------TSRTRVDELRERGIRA-VLGNAA----NEEIMQLAHLDC 481 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHCCCeE-EEcCCC----CHHHHHhcCccc
Confidence 578999999999999999999999988 777 5788777665431110 000111 12222 147
Q ss_pred ceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+|.++-+...+..+- ..+++. .+++|+-.. +++..+.|++-|+..+
T Consensus 482 a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~v 532 (558)
T PRK10669 482 ARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGANQV 532 (558)
T ss_pred cCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCCEE
Confidence 887776665433222 112222 355666432 4677788888887654
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.11 Score=48.47 Aligned_cols=95 Identities=21% Similarity=0.421 Sum_probs=56.7
Q ss_pred eEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC-------Cce-
Q psy14499 60 KISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN-------EGE- 122 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~-------~~~- 122 (262)
||+|.|||.+|+.+.|.+.+. ..++|+|-|. .|++.+.-+.+ .+|.+.. +. +.+
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~ 71 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKF 71 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeE
Confidence 689999999999999998764 6899999883 35554433332 2333211 00 112
Q ss_pred ec--C---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 KI--N---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ~~--~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+ . +++++ | +.++|++++|+.. ..+.+.+... .|| ++..++
T Consensus 72 ~i~v~~~~dp~~~~w~~~gvDiVle~tG~-~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 72 VIVVASERDPSDLPWKALGVDIVIECTGK-FRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred EEEEEecCCcccCchhhcCCCEEEEccch-hhcHHHHHHHhhCCCEEEEeCCC
Confidence 11 1 13332 3 4589999999964 3566655543 566 444444
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.029 Score=46.33 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=57.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce-----ec-CCCcccccc
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE-----KI-NDSKEFWSI 133 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~-----~~-~~~~~il~~ 133 (262)
+|+|+|.|+.|.++|..|.+.|..|. +.+ .|.+.+..+.+.+.....+|+.+ .+ +|.++.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~----------~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWG----------RDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EET----------SCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEe----------ccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999998877 655 35566666665544333344321 12 2233344 4
Q ss_pred CceEEeeCCccCcccccchhcc-----CceEEEecCCCC
Q psy14499 134 PCDILIPAAIEDQITINNANNV-----TAKIILEGANGP 167 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p 167 (262)
++|+++-+.+.... .+..+++ +.+.|+-...+-
T Consensus 69 ~ad~IiiavPs~~~-~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 69 DADIIIIAVPSQAH-REVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp T-SEEEE-S-GGGH-HHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccEEEecccHHHH-HHHHHHHhhccCCCCEEEEecCCc
Confidence 89999998877655 3444443 334555555553
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.18 Score=48.18 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=27.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.||..+|..|.+.|++|+ +.|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~-~~d 30 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVT-GVD 30 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEE-EEE
Confidence 379999999999999999999999988 556
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.14 Score=49.27 Aligned_cols=97 Identities=20% Similarity=0.420 Sum_probs=58.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCccC---C-C------Ccee-
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIKD---F-N------EGEK- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~~---~-~------~~~~- 123 (262)
.||.|.|||.+|+.++|.+.+ .+.+||+|-|.. .|++.+.-+. -.+|.+.+ + . +.+.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I 157 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQI 157 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEE
Confidence 499999999999999999875 789999887732 3444432222 23343321 0 0 1111
Q ss_pred -cC---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEecC
Q psy14499 124 -IN---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEGA 164 (262)
Q Consensus 124 -~~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~A 164 (262)
+. ++.++ | +.++|++++|+.. ..+.+.+... .| |+|+.+.
T Consensus 158 ~V~~~~dp~~~~w~~~gVDiVlesTG~-f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 158 KVTSKRDPAEIPWGDFGAEYVVESSGV-FTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred EEEecCCcccCcccccCCCEEEEcCch-hccHHHHHHHhhCCCCEEEECCC
Confidence 11 13332 3 3589999999964 3555555543 45 4777765
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.013 Score=55.56 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=55.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC---------ceeeCCCCCCHHHHHHHHHhcCCccCCCCce---
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK---------TTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE--- 122 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~---------G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~--- 122 (262)
.++..+|+|+|.|.+|..+++.|...|..-+.+.|.+ -.+|+++-+...+....+++-..+......+
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 4788999999999999999999999998666688854 3455555444444444443322222111111
Q ss_pred -ecC--CCccccccCceEEeeCCc
Q psy14499 123 -KIN--DSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 123 -~~~--~~~~il~~~~DIlipaa~ 143 (262)
.++ +..+++ .++|++|.|+-
T Consensus 118 ~~i~~~~~~~~~-~~~DlVid~~D 140 (370)
T PRK05600 118 ERLTAENAVELL-NGVDLVLDGSD 140 (370)
T ss_pred eecCHHHHHHHH-hCCCEEEECCC
Confidence 122 011233 47999999985
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.023 Score=57.73 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=65.1
Q ss_pred HhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 51 ~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
..+.+++.++|+|+|+|.+|+.+|+.|.+.|.+|+ +.|. +... +...+.| ....++.+++
T Consensus 362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr----------~~~~--~~a~~~G-------v~~~~~~~el 421 (667)
T PLN02712 362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSR----------SDYS--DEAQKLG-------VSYFSDADDL 421 (667)
T ss_pred hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEEC----------ChHH--HHHHHcC-------CeEeCCHHHH
Confidence 34667899999999999999999999999999887 5452 1111 1111222 1122223444
Q ss_pred cccCceEEeeCCccCcccccchh-----ccC-ceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 131 WSIPCDILIPAAIEDQITINNAN-----NVT-AKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~-----~~~-~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
...++|++|-|.+... +.+.+. .++ ..+|++-+..-. .-++.+.+...|+.++
T Consensus 422 ~~~~aDvVILavP~~~-~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 422 CEEHPEVILLCTSILS-TEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred HhcCCCEEEECCChHH-HHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceE
Confidence 4346899999977432 222222 232 357777765532 2222233334455555
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.051 Score=50.57 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
+..||+|+|+|++|+..++.+.+. +..+++|+|+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr 36 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSR 36 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcC
Confidence 358999999999999999999764 8999999994
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.11 Score=50.43 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=34.4
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.+.++++++|+|+|.|.+|..+|+.|.+.|.+|+ ++|.
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~ 47 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDD 47 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 345667789999999999999999999999999977 6663
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999999999998756588853
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.012 Score=51.78 Aligned_cols=112 Identities=19% Similarity=0.322 Sum_probs=68.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCC--ccCCCCceecCCCccccc---
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRS--IKDFNEGEKINDSKEFWS--- 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~--~~~~~~~~~~~~~~~il~--- 132 (262)
++|+|+|.|.+|+.+|+.|.+.|..|+ +.| -|.+.+.+... +... +.+ +++ + .+.+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv-~Id----------~d~~~~~~~~~~~~~~~~v~g--d~t--~-~~~L~~agi 64 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVV-LID----------RDEERVEEFLADELDTHVVIG--DAT--D-EDVLEEAGI 64 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceE-EEE----------cCHHHHHHHhhhhcceEEEEe--cCC--C-HHHHHhcCC
Confidence 589999999999999999999999999 445 37777666433 2111 100 111 0 111222
Q ss_pred cCceEEeeCCccCcccc---cchhc-cCceEEEecCCCCCCHHHHHHHHHCC--CeEeccccc
Q psy14499 133 IPCDILIPAAIEDQITI---NNANN-VTAKIILEGANGPTTTEADDILRDKG--IILAPDVIT 189 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~-~~~kiIve~AN~p~t~ea~~~l~~rg--i~~iPD~~a 189 (262)
.++|+++-++..+..|- ..+.+ +..+-|+.=++ +++-.+.|++-| ..+.|...+
T Consensus 65 ~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~---~~~~~~~~~~~g~~~ii~Pe~~~ 124 (225)
T COG0569 65 DDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR---NPEHEKVLEKLGADVIISPEKLA 124 (225)
T ss_pred CcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec---CHHHHHHHHHcCCcEEECHHHHH
Confidence 48999999998766553 33333 34443333332 455567777777 344455544
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.018 Score=52.16 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|++.+|+|+|.|.||..+++.|.+.|..-+.+.|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4788999999999999999999999996555588854
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.026 Score=52.76 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998556688853
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.089 Score=48.16 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHH----CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFK----AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~----~g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.+++|++++|+|=++ ||+-++.+|.+ .+++|+ ++++
T Consensus 136 ~~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs 193 (286)
T PRK14184 136 FRPCTPAGVM----TLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHS 193 (286)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeC
Confidence 3578888774 5667779999999999999755 89999999998 789987 7664
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.004 Score=59.10 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|++.+|+|+|+|.+|+.+++.|.+.|..=+.+.|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 578999999999999999999999999866658774
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.048 Score=44.69 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.|..++ .+++++.|.+++|++|.|.|= ..||+-++.+|.+.|+.+. ++++
T Consensus 9 p~t~~a~----~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~ 60 (140)
T cd05212 9 SPVAKAV----KELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDW 60 (140)
T ss_pred ccHHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCC
Confidence 4565555 556677899999999999997 5599999999999999988 7774
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.032 Score=48.63 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=58.0
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-Ccc--CCC-CceecCCCcccccc
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIK--DFN-EGEKINDSKEFWSI 133 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~--~~~-~~~~~~~~~~il~~ 133 (262)
++|.|+| .|++|+.+++.|.+.|.+|+ +.+ -+.+++.+..+... .+. ++. .....+ ..+.. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~----------r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~-~~ea~-~ 67 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGS----------RDLEKAEEAAAKALEELGHGGSDIKVTGAD-NAEAA-K 67 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEE----------cCHHHHHHHHHHHHhhccccCCCceEEEeC-hHHHH-h
Confidence 4799997 89999999999999999887 555 24444433332210 010 110 011112 22333 4
Q ss_pred CceEEeeCCccCcccc---cchhccCceEEEecCCCCC
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVTAKIILEGANGPT 168 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~~kiIve~AN~p~ 168 (262)
++|++|-|.....+.. +....++.++|+...|+..
T Consensus 68 ~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 68 RADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 8999999887654422 1222344589999999854
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.017 Score=46.68 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|+|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcC
Confidence 5899999999999999999999865557774
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.099 Score=48.94 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=33.1
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+.+.. .|.+|+|.|+|.+|...+++....|++|+++.-
T Consensus 158 alk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~ 198 (339)
T COG1064 158 ALKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR 198 (339)
T ss_pred ehhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 34443333 589999999999999999999999999996653
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.024 Score=52.08 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++...+|-.+|.|++|.+.+..|.+.|++|+ |.| .+.++..++.+...++.+- |.++- .+
T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~d----------r~~~k~~~f~~~Ga~v~~s--------PaeVa-e~ 91 (327)
T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYD----------RTKDKCKEFQEAGARVANS--------PAEVA-ED 91 (327)
T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEE-EEe----------CcHHHHHHHHHhchhhhCC--------HHHHH-hh
Confidence 4568899999999999999999999999998 877 7888888888776555443 33443 35
Q ss_pred ceEEeeC
Q psy14499 135 CDILIPA 141 (262)
Q Consensus 135 ~DIlipa 141 (262)
||++|-|
T Consensus 92 sDvvitm 98 (327)
T KOG0409|consen 92 SDVVITM 98 (327)
T ss_pred cCEEEEE
Confidence 6666643
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.078 Score=43.20 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++|+++|+| -|..+|+.|.+.|..|+ ..| +|+.++...++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~Vi-aID----------i~~~aV~~a~~~ 58 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVI-VID----------INEKAVEKAKKL 58 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHh
Confidence 67899999999 89999999999999999 668 788876666553
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.044 Score=49.64 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 589999999999999999999999977 666
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=48.52 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHH---HHHHhcCCccC---C-C------C
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQ---KYVTFTRSIKD---F-N------E 120 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~---~~~~~~g~~~~---~-~------~ 120 (262)
+..+|+|.|||.+|+.+.|.|.+. ...+++|-|. .|++.+. ++-..+|++.. . . +
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~---------~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~ 129 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT---------GGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD 129 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC---------CCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC
Confidence 447999999999999999999875 4689988773 2444332 22223333211 0 0 1
Q ss_pred ceec---C--CCcc--ccccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 121 GEKI---N--DSKE--FWSIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 121 ~~~~---~--~~~~--il~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+.+ . ++++ +-+.++|++++|+.. ..+.+.+... .|| +++.++
T Consensus 130 gk~I~v~~~~dp~~~~w~~~gvDiVie~TG~-f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 130 GKVIKVVSDRNPLNLPWGELGIDLVIEGTGV-FVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred CEEEEEEEcCCcccccccccCCCEEEECcch-hhhHHHHHHHHHCCCEEEEeCCC
Confidence 1111 1 1333 224799999999964 4566655544 566 444443
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.24 Score=44.89 Aligned_cols=176 Identities=13% Similarity=0.165 Sum_probs=97.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
+++.++|+||+|++++.-|.+.| ..|+ |++ -+.++..++.++.+.. ..+ +..-...+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~----------~~~e~~~~l~~~~g~~-------~~~-~~~~~~~~ 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTN----------RSEEKRAALAAEYGVV-------TTT-DNQEAVEE 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeC----------CCHHHHHHHHHHcCCc-------ccC-cHHHHHhh
Confidence 57999999999999999999988 3555 887 3566665555554321 122 22233358
Q ss_pred ceEEeeCCccCcccccchhcc----CceEEEecCCCCCCHHHHHHHH-HCCCeEeccccccchhhHHHHHH---------
Q psy14499 135 CDILIPAAIEDQITINNANNV----TAKIILEGANGPTTTEADDILR-DKGIILAPDVITNAGGVIVSYFE--------- 200 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~----~~kiIve~AN~p~t~ea~~~l~-~rgi~~iPD~~aN~GGvi~s~~E--------- 200 (262)
+|+++.|--+..+ .+...++ +.|+|+.-+=+-......+.|- .+=+.++|..-+-.|--.+.++.
T Consensus 63 advv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~ 141 (266)
T COG0345 63 ADVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDK 141 (266)
T ss_pred CCEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHH
Confidence 9999988755332 2222333 4667777666655555555553 33356677765544432221111
Q ss_pred -HHh----hhcCCCCCHHHHHHHH-------HHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy14499 201 -WVQ----NLSNLLWTEQEINLRL-------NNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQ 255 (262)
Q Consensus 201 -~~~----~~~~~~~~~~~v~~~l-------~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~ 255 (262)
+++ ......|=+|.-.+.+ =.++.-.++.+.+.+-+.|+|. +-|+.++.+-+.-
T Consensus 142 ~~v~~l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~-~~A~~l~~~t~~G 207 (266)
T COG0345 142 AFVEALLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPR-EEARELAAQTVAG 207 (266)
T ss_pred HHHHHHHHhcCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHH
Confidence 222 1223344334333322 1223344555556677778665 4555666655543
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.042 Score=47.58 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCChhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHH
Q psy14499 33 RQKATGRGVFIIGSKIA-----SKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ 106 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~-----~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~ 106 (262)
-.+.|..||..-++..= +..|.+++|++++|+|=++ ||+-++.+|.+.|++|+ ++|++|..+-..+-..
T Consensus 32 ~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~~~---- 106 (197)
T cd01079 32 ILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGESI---- 106 (197)
T ss_pred ccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCccccccccccc----
Confidence 35799999876655320 0114589999999999765 89999999999999988 9998776553221110
Q ss_pred HHHHhcCCccCCCCceecCCCc-ccc--ccCceEEeeCCc-cCc-ccccchhccCceEEEe-cCCCCCCHHHHHHHHHCC
Q psy14499 107 KYVTFTRSIKDFNEGEKINDSK-EFW--SIPCDILIPAAI-EDQ-ITINNANNVTAKIILE-GANGPTTTEADDILRDKG 180 (262)
Q Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~-~il--~~~~DIlipaa~-~~~-it~e~a~~~~~kiIve-~AN~p~t~ea~~~l~~rg 180 (262)
++. .+...+.+ .+. -..+||+|-|.. .+. ++.+..+. .-+|++ |-|.-+. +..+++-
T Consensus 107 ~hs-----------~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~--GavVIDVGi~~dvd----~~v~~~a 169 (197)
T cd01079 107 RHE-----------KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD--GAICINFASIKNFE----PSVKEKA 169 (197)
T ss_pred ccc-----------cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC--CcEEEEcCCCcCcc----HhHHhhc
Confidence 110 00000000 121 258999998876 476 78777663 234444 3332222 1223332
Q ss_pred CeEeccccccchhhHHHHH
Q psy14499 181 IILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 181 i~~iPD~~aN~GGvi~s~~ 199 (262)
-.+.|= .|.++++.+
T Consensus 170 s~iTPv----VGpvTva~L 184 (197)
T cd01079 170 SIYVPS----IGKVTIAML 184 (197)
T ss_pred CEeCCC----cCHHHHHHH
Confidence 246663 677776553
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.059 Score=48.84 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEe
Confidence 689999999999999999999999987 767
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.03 Score=48.43 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+|+.|.+.|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4788999999999999999999999998544488854
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.17 Score=47.35 Aligned_cols=96 Identities=20% Similarity=0.346 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Ccee
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGEK 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~~ 123 (262)
.||+|.|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.. +. +.+.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~ 72 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKLNADISADENSITVNGKT 72 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEE
Confidence 4899999999999999997653 6899999773 35554433322 3443321 00 1111
Q ss_pred ---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 124 ---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 124 ---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.. +++++ | +.++|++++|+.. ..+.+.+... .||.|.-.+
T Consensus 73 I~v~~~~dp~~~~W~~~gvDiV~e~tG~-f~s~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 73 IKCVSDRNPLNLPWKEWGIDLIIESTGV-FVTKEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEcCCcccCChhhcCCCEEEeccch-hhhHHHHHHHhhCCcEEEEeCC
Confidence 11 13332 3 4699999999964 3555555544 577555444
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.016 Score=59.07 Aligned_cols=120 Identities=20% Similarity=0.247 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.|++.+|+|+|+|.||..+++.|...|..-+.++|.+- +++.-|+-+-+.. ...+ +.++.+.. .+.+.+.+
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~~----~~dv-G~~Kv~v~--~~~l~~in 110 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGAR----VPSF-GRPKLAVM--KEQALSIN 110 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCcC----hhhC-CCHHHHHH--HHHHHHhC
Confidence 47899999999999999999999999986666888321 1111121111000 0001 11111111 12233444
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCCCCH---HHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGPTTT---EADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~---ea~~~l~~rgi~~i 184 (262)
.++=|.+- ..-++.+|+..+ ++.+|+++..++... ...+...+++|.++
T Consensus 111 P~~~I~~~-~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i 164 (679)
T PRK14851 111 PFLEITPF-PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVI 164 (679)
T ss_pred CCCeEEEE-ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 45544432 334566666654 577777777765321 12233456777765
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.049 Score=49.77 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=59.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh----cCCccC-------CCCceecCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIKD-------FNEGEKINDS 127 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~----~g~~~~-------~~~~~~~~~~ 127 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.| .+.+.+.+..+. .+.+.. ....+..++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 73 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LID----------VMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGL 73 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCH
Confidence 579999999999999999999999887 666 345444443321 111110 0001111112
Q ss_pred ccccccCceEEeeCCccCcc-cc----cchhccCce-EEEecCCCCCCHHHHHHH
Q psy14499 128 KEFWSIPCDILIPAAIEDQI-TI----NNANNVTAK-IILEGANGPTTTEADDIL 176 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~i-t~----e~a~~~~~k-iIve~AN~p~t~ea~~~l 176 (262)
.+.+ .+||++|.|.+++.. .. +..+.++.+ +|+...++....+..+.+
T Consensus 74 ~~~~-~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~ 127 (311)
T PRK06130 74 AAAV-SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAV 127 (311)
T ss_pred HHHh-ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhc
Confidence 2233 489999999887642 22 222222333 555666665444444444
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.11 Score=47.85 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=43.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHH----CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFK----AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~----~g~~vv~V~D~ 90 (262)
-.++|..|+ .+.+++.+.+++|++|+|+|=+ .||+-++.+|.+ .+++|+ ++.+
T Consensus 138 ~~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs 195 (295)
T PRK14174 138 FVSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHS 195 (295)
T ss_pred cCCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeC
Confidence 357899887 5667778999999999999975 489999999987 688877 6663
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.24 Score=46.44 Aligned_cols=96 Identities=26% Similarity=0.397 Sum_probs=59.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Cce---
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGE--- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~--- 122 (262)
.||+|.|||.+|+.+.|.+.+ ....+|+|-|. .|++.+.-+.+ .+|.+.. +. +.+
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~ 73 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIR 73 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEE
Confidence 589999999999999999765 46899999773 35554433322 3343321 00 111
Q ss_pred ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 123 KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 123 ~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.. .+++++ | +.++|++++|+.. ..+.+.+... .||.|.-.|
T Consensus 74 v~~~~dp~~~~W~~~gvDiVle~tG~-f~s~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 74 LLNNRDPKELPWTDLGIDIVIEATGK-FNSKEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEcCChhhCcccccCCCEEEEccch-hhhHhHHHHHHHcCCeEEEeCC
Confidence 11 024443 3 4699999999964 3566655544 577555443
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.17 Score=47.35 Aligned_cols=98 Identities=17% Similarity=0.334 Sum_probs=58.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC----C-C------Cce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD----F-N------EGE 122 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~----~-~------~~~ 122 (262)
..||+|.|||.+|+..++.+.+ .+.++++|+|.. .|++.+.-+.+ .+|.+.+ + . +.+
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~--------~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~ 76 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPF--------ITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK 76 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCC--------CCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCE
Confidence 3699999999999999999876 479999998842 24544333222 2343321 0 0 011
Q ss_pred e---c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 123 K---I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 123 ~---~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
. . .+++++ | +.++|++++|+.. ..+.+.+... .||.|+=.+
T Consensus 77 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~-~~s~~~a~~hl~aGak~ViiSa 127 (338)
T PLN02358 77 PVTVFGIRNPEDIPWGEAGADFVVESTGV-FTDKDKAAAHLKGGAKKVVISA 127 (338)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEcccc-hhhHHHHHHHHHCCCEEEEeCC
Confidence 1 1 112232 3 3689999999964 4666665544 566444443
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.082 Score=48.31 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.-.+|+|+|+|.+|..+++.|.+.|. +|+ +.| .+.+.+....+ .+... ...++.++.+ .+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~d----------r~~~~~~~a~~-~g~~~-----~~~~~~~~~~-~~ 66 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIV-GAD----------RSAETRARARE-LGLGD-----RVTTSAAEAV-KG 66 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEE----------CCHHHHHHHHh-CCCCc-----eecCCHHHHh-cC
Confidence 34689999999999999999999885 555 666 34555444332 22110 1111123334 48
Q ss_pred ceEEeeCCccCc
Q psy14499 135 CDILIPAAIEDQ 146 (262)
Q Consensus 135 ~DIlipaa~~~~ 146 (262)
||++|.|.+...
T Consensus 67 aDvViiavp~~~ 78 (307)
T PRK07502 67 ADLVILCVPVGA 78 (307)
T ss_pred CCEEEECCCHHH
Confidence 999999998654
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.055 Score=49.38 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|| .+++++.+.+++|++++|+|-+ .||+-++.+|.+.+++|+ +|.+
T Consensus 136 ~~PcTp~av----i~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs 189 (281)
T PRK14183 136 FVPCTPLGV----MELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHI 189 (281)
T ss_pred CCCCcHHHH----HHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 457888877 5567778999999999999987 699999999999999987 8775
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.058 Score=49.25 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..++|..|+. +++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 135 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs 188 (282)
T PRK14169 135 VVASTPYGIM----ALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHS 188 (282)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECC
Confidence 4678998875 4566779999999999999754 89999999999999987 7764
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.051 Score=49.50 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|+|+|.|.+|..+|..|...|+.|+ +.|
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d 35 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFE 35 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEE
Confidence 389999999999999999999999988 777
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.088 Score=46.89 Aligned_cols=89 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g---~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
++|.|+|+|++|..+++.|.+.| ..+. ++| -+.+.+.++.+..+ ....++..+++ .++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~----------r~~~~~~~~~~~~g-------~~~~~~~~~~~-~~a 63 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSD----------PSPEKRAALAEEYG-------VRAATDNQEAA-QEA 63 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEc----------CCHHHHHHHHHhcC-------CeecCChHHHH-hcC
Confidence 57999999999999999999888 4443 656 24555544444322 11122133444 489
Q ss_pred eEEeeCCccCcccccchhccC---ceEEEecCCCC
Q psy14499 136 DILIPAAIEDQITINNANNVT---AKIILEGANGP 167 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~~---~kiIve~AN~p 167 (262)
|+++.|.....+. +....++ -++|+.-.|+-
T Consensus 64 dvVil~v~~~~~~-~v~~~l~~~~~~~vvs~~~gi 97 (267)
T PRK11880 64 DVVVLAVKPQVME-EVLSELKGQLDKLVVSIAAGV 97 (267)
T ss_pred CEEEEEcCHHHHH-HHHHHHHhhcCCEEEEecCCC
Confidence 9999998765432 2222221 35777777765
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.032 Score=52.77 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4789999999999999999999999998666688854
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.095 Score=50.18 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++++.|.|.|..|.++|+.|.+.|++|+ ++|.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~ 36 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDG 36 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 4678999999999999999999999999987 7774
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.4 Score=41.96 Aligned_cols=81 Identities=23% Similarity=0.413 Sum_probs=53.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|-|.||..=+++|.+.|++|+-+++. + .+++..+.++.+ +.-. . ..++ .+.+ .
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~---------~-~~el~~~~~~~~-i~~~-~-~~~~-~~~~--~ 71 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE---------F-EPELKALIEEGK-IKWI-E-REFD-AEDL--D 71 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC---------c-cHHHHHHHHhcC-cchh-h-cccC-hhhh--c
Confidence 3689999999999999999999999999999977763 3 456666655543 1111 1 1121 2222 2
Q ss_pred CceEEeeCCccCccccc
Q psy14499 134 PCDILIPAAIEDQITIN 150 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e 150 (262)
++++.|-|+....+|..
T Consensus 72 ~~~lviaAt~d~~ln~~ 88 (210)
T COG1648 72 DAFLVIAATDDEELNER 88 (210)
T ss_pred CceEEEEeCCCHHHHHH
Confidence 37777777765555543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.068 Score=49.98 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=64.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcccc--c--cC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKEFW--S--IP 134 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~il--~--~~ 134 (262)
+|+|+|.|++|.-++..+...|+..|-++| ++.++|...++..+. ....+..+.. ...++ . ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d----------~~~~Rl~~A~~~~g~~~~~~~~~~~~--~~~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD----------RSPERLELAKEAGGADVVVNPSEDDA--GAEILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC----------CCHHHHHHHHHhCCCeEeecCccccH--HHHHHHHhCCCC
Confidence 999999999999999999999987776778 788887666553331 1111111000 11121 1 36
Q ss_pred ceEEeeCCccCc--ccccchhccCceEEEecCCCCCC-HHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQ--ITINNANNVTAKIILEGANGPTT-TEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~--it~e~a~~~~~kiIve~AN~p~t-~ea~~~l~~rgi~~i 184 (262)
+|++++|+.... .+.-.+.+...+++.=|--.+-. +.-...+-.|++.+.
T Consensus 239 ~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~ 291 (350)
T COG1063 239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLR 291 (350)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEE
Confidence 999999997221 11122223356665555554432 222233445555554
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.048 Score=50.24 Aligned_cols=33 Identities=39% Similarity=0.605 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V 87 (262)
+.+.++|+|+|+|.+|+.+++.|.+.|.+|+++
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~ 65 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLAT 65 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEE
Confidence 457889999999999999999999999888844
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=48.79 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++++++|+|+|.|.+|..+|+.|.+.|+.|+ ++|.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~ 36 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDE 36 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4688999999999999999999999999988 6664
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.06 Score=50.08 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=28.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|+..|..+...|+.|+ +.|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 589999999999999999999999988 777
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.049 Score=49.13 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=27.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..++..|...|..|+ +.|
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEe
Confidence 479999999999999999999999888 667
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.064 Score=49.03 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=62.2
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+.. ++++.+.++.|++++|+|-+ .||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 138 ~~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T-------~~l~-------- 197 (284)
T PRK14177 138 YLPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKT-------QNLP-------- 197 (284)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 45789988865 55677999999999999975 589999999999999988 887521 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+.. ..+||+|-|.. .+.++.+.++.
T Consensus 198 -----------------~~~-~~ADIvIsAvGk~~~i~~~~ik~ 223 (284)
T PRK14177 198 -----------------SIV-RQADIIVGAVGKPEFIKADWISE 223 (284)
T ss_pred -----------------HHH-hhCCEEEEeCCCcCccCHHHcCC
Confidence 111 47888887765 47777776664
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.29 Score=45.40 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
...++++|+|.|..|+..+..|.. .+.+-|.|.+ -+.++..++.++...-.+. .....++.++.+ .+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~----------R~~~~a~~l~~~~~~~~g~-~v~~~~d~~~al-~~ 197 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWA----------RDAAKAEAYAADLRAELGI-PVTVARDVHEAV-AG 197 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEc----------CCHHHHHHHHHHHhhccCc-eEEEeCCHHHHH-cc
Confidence 356799999999999999988875 5677777877 4667666665532210011 111223233444 47
Q ss_pred ceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccc
Q psy14499 135 CDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~a 189 (262)
+||++-|++. .+++.+..+. .+.+..=|++.|...|.+..+.++.-.|+-|.+.
T Consensus 198 aDiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 198 ADIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred CCEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 9999999864 3344433221 2446666777777666665555554445556544
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.027 Score=52.93 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc---------eeeCCCCCCHHHHHHHHHhcCCccCCCCcee--
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT---------TIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK-- 123 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G---------~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~-- 123 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+- .+|+++-+-..+....+++-..+..+-..+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 36889999999999999999999999987777888532 3444432222333333332222222111111
Q ss_pred --cCCCc---cccccCceEEeeCCccCccc----ccchhccCceEEEecCCCC
Q psy14499 124 --INDSK---EFWSIPCDILIPAAIEDQIT----INNANNVTAKIILEGANGP 167 (262)
Q Consensus 124 --~~~~~---~il~~~~DIlipaa~~~~it----~e~a~~~~~kiIve~AN~p 167 (262)
++ .+ +++ .++|++|.|+-. .-+ -+.+.+.+..+|..+..+.
T Consensus 105 ~~i~-~~~~~~~~-~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 105 RRLT-WSNALDEL-RDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred eecC-HHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 21 11 233 489999999742 111 1234444566666655443
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.04 Score=51.59 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...+|+|+||||.|+-.|+.|.+.|..++ ++|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsR 83 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSR 83 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCc
Confidence 57899999999999999999999999988 6664
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.1 Score=47.39 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+++|+|.|.||..++++++.+|+++|.++|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~ 176 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWE 176 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 3577899999999999999999999999776777
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.12 Score=47.81 Aligned_cols=126 Identities=15% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+.+++..+ .-.++.|+|.|..++.-++.|.. +..+-|-|.+ .+.+...++.++...+ ++ .....++
T Consensus 119 a~~~La~~-~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~----------r~~~~~~~~~~~~~~~-~~-~v~~~~~ 185 (313)
T PF02423_consen 119 AARYLARP-DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYS----------RSPERAEAFAARLRDL-GV-PVVAVDS 185 (313)
T ss_dssp HHHHHS-T-T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-----------SSHHHHHHHHHHHHCC-CT-CEEEESS
T ss_pred HHHHhCcC-CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEc----------cChhHHHHHHHhhccc-cc-cceeccc
Confidence 44555432 45699999999999999998876 5676666766 5676666665543321 22 2223332
Q ss_pred CccccccCceEEeeCCccCc----ccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccc
Q psy14499 127 SKEFWSIPCDILIPAAIEDQ----ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVIT 189 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~----it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~a 189 (262)
.++.. .++||++-|+.... ++.+..+. .+-++.=|++.|-..|.+..+-++--.++ |...
T Consensus 186 ~~~av-~~aDii~taT~s~~~~P~~~~~~l~~-g~hi~~iGs~~~~~~El~~~~~~~a~~~v-d~~~ 249 (313)
T PF02423_consen 186 AEEAV-RGADIIVTATPSTTPAPVFDAEWLKP-GTHINAIGSYTPGMRELDDELLKRADIVV-DSEA 249 (313)
T ss_dssp HHHHH-TTSSEEEE----SSEEESB-GGGS-T-T-EEEE-S-SSTTBESB-HHHHHCSEEEE-SCHH
T ss_pred hhhhc-ccCCEEEEccCCCCCCccccHHHcCC-CcEEEEecCCCCchhhcCHHHhccCCEEE-ccHH
Confidence 44455 58999999987654 56554433 56688888888876676666666655565 7764
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.067 Score=52.71 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=50.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH----------HhcCCccCC------CCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV----------TFTRSIKDF------NEGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~----------~~~g~~~~~------~~~~ 122 (262)
++|.|+|.|.+|..+|..|...|+.|+ +.| .+.+.+.+.. .+.|.+..- ...+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D----------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~ 76 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYD----------ARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR 76 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE
Confidence 579999999999999999999999988 878 5666555431 223332210 0112
Q ss_pred ecCCCccccccCceEEeeCCccCccc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQIT 148 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it 148 (262)
..++.++ + .+||++|+|-+++.--
T Consensus 77 ~~~~~~~-~-~~aDlViEav~E~~~v 100 (507)
T PRK08268 77 PVEALAD-L-ADCDLVVEAIVERLDV 100 (507)
T ss_pred EeCCHHH-h-CCCCEEEEcCcccHHH
Confidence 2222322 3 3899999997765443
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.11 Score=47.65 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|.++|..|.+.|.+|+ +.|
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d 32 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWD 32 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEe
Confidence 379999999999999999999999987 666
|
|
| >KOG0455|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.12 Score=46.53 Aligned_cols=174 Identities=17% Similarity=0.133 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeC----CCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYN----PNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~----~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+...|+|+|+|+||+++.+.+..+ -+++|+|||+.+.+.. |.-++-+..-++...+++-
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~~a-------- 73 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTGSA-------- 73 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcCCc--------
Confidence 457899999999999998777653 2699999999887754 3333333333344443321
Q ss_pred cCCCcc----cc-ccCceEEeeCCccCcccccchhccCceEEEecCC-CCCC--HHHHHHHHHC---CCeEeccccccch
Q psy14499 124 INDSKE----FW-SIPCDILIPAAIEDQITINNANNVTAKIILEGAN-GPTT--TEADDILRDK---GIILAPDVITNAG 192 (262)
Q Consensus 124 ~~~~~~----il-~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN-~p~t--~ea~~~l~~r---gi~~iPD~~aN~G 192 (262)
++ .+. ++ +-..=||++|+.+-.+-+-.-+-+.-++-+.-+| -|+| .+-.+-|..+ +-.+.+.-...+|
T Consensus 74 ls-LdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAG 152 (364)
T KOG0455|consen 74 LS-LDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAG 152 (364)
T ss_pred cc-HHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCC
Confidence 11 222 22 2245678888765443332222223333334444 4664 4555666555 5566666556555
Q ss_pred -hhHHHHHHHHhhhcC-------CCCCHHHHHHHHHHHHH--HHHHHHHHHHhhcCC
Q psy14499 193 -GVIVSYFEWVQNLSN-------LLWTEQEINLRLNNIIC--NAFDAIWELANTKKV 239 (262)
Q Consensus 193 -Gvi~s~~E~~~~~~~-------~~~~~~~v~~~l~~~~~--~~~~~v~~~a~~~~~ 239 (262)
.+|++--|.++--.. +.-+..-++..+++--. -.+.++.+.|++.|.
T Consensus 153 LPiIs~L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGY 209 (364)
T KOG0455|consen 153 LPIISSLNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGY 209 (364)
T ss_pred chhHHHHHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCC
Confidence 345555666542110 00112223333332211 245678888888775
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.039 Score=47.60 Aligned_cols=37 Identities=22% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.++..+|.|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3688999999999999999999999998877788753
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.039 Score=45.93 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|.||...++.|.+.|+.|+ |.+ |+ +. +++.++ +.+. + ..+.+. ..++ .
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~-VIs-------p~-~~-~~l~~l----~~i~-~-~~~~~~-~~dl--~ 69 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVT-VVS-------PE-IC-KEMKEL----PYIT-W-KQKTFS-NDDI--K 69 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEc-------Cc-cC-HHHHhc----cCcE-E-EecccC-hhcC--C
Confidence 47899999999999999999999999999998 443 22 21 122221 1110 0 011122 2223 4
Q ss_pred CceEEeeCCccCcccccch
Q psy14499 134 PCDILIPAAIEDQITINNA 152 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a 152 (262)
++|+++-|+..+.+|...+
T Consensus 70 ~a~lViaaT~d~e~N~~i~ 88 (157)
T PRK06719 70 DAHLIYAATNQHAVNMMVK 88 (157)
T ss_pred CceEEEECCCCHHHHHHHH
Confidence 7899999987766665433
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.19 Score=47.03 Aligned_cols=97 Identities=21% Similarity=0.339 Sum_probs=60.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~~-- 123 (262)
.||+|.|||.+|+.+.|.+.+ ....+|+|-|.. .|++.+.-+.+ .+|.+.. +. +.+.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~--------~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~ 74 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPF--------MTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVH 74 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCC--------CChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEE
Confidence 589999999999999999765 469999987731 35544333322 2343321 00 1111
Q ss_pred -c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 124 -I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 124 -~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
. .++.++ | +.++|++++|+.. ..+.+.+... .||.|.-.+
T Consensus 75 ~~~~~dp~~lpW~~~gvDiVle~tG~-~~s~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 75 VFFEKDPAAIPWGKNGVDVVCESTGV-FLTKEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEeCCChhhCCccccCCCEEEEecch-hcCHHHHHHHhhCCCEEEEeCC
Confidence 1 123443 3 5799999999964 4666666654 577666555
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.028 Score=43.25 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|+||..-++.|.+.|++|+-++.
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 368999999999999999999999999999985554
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.037 Score=52.70 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|+|.+|..+++.|...|..-+.+.|.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDF 70 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 468899999999999999999999999877778884
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.061 Score=51.43 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=54.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-CCCceecCCCccccc---cC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-FNEGEKINDSKEFWS---IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-~~~~~~~~~~~~il~---~~ 134 (262)
++|+|.|+|.+|+.+++.|.+.|..++ +.| -|++.+.+..+..+ +.- +.+.. + ...+.+ .+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~-vid----------~~~~~~~~~~~~~~-~~~~~gd~~--~-~~~l~~~~~~~ 65 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVT-VID----------TDEERLRRLQDRLD-VRTVVGNGS--S-PDVLREAGAED 65 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEE----------CCHHHHHHHHhhcC-EEEEEeCCC--C-HHHHHHcCCCc
Confidence 479999999999999999999999998 556 36666655544221 100 00111 1 111111 37
Q ss_pred ceEEeeCCccCcccc---cchhcc--CceEEEecC
Q psy14499 135 CDILIPAAIEDQITI---NNANNV--TAKIILEGA 164 (262)
Q Consensus 135 ~DIlipaa~~~~it~---e~a~~~--~~kiIve~A 164 (262)
+|.++-|+..+..|. ..++.+ ..++|+...
T Consensus 66 a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 66 ADLLIAVTDSDETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred CCEEEEecCChHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 899998887655543 344444 344555543
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.071 Score=48.20 Aligned_cols=113 Identities=13% Similarity=0.195 Sum_probs=66.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.+|.|+|+|++|+.+++.|.+.| .+++.+..+ +.+++....... +......+..++. .+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~----------~~~~~~~l~~~~------~~~~~~~~~~e~~-~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS----------KNEHFNQLYDKY------PTVELADNEAEIF-TK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC----------cHHHHHHHHHHc------CCeEEeCCHHHHH-hh
Confidence 37999999999999999999887 566633321 122333332221 1122122133343 48
Q ss_pred ceEEeeCCccCcccccchh----cc-CceEEEecCCCCCCHHHHHHHHH-CCCeEeccccc
Q psy14499 135 CDILIPAAIEDQITINNAN----NV-TAKIILEGANGPTTTEADDILRD-KGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~----~~-~~kiIve~AN~p~t~ea~~~l~~-rgi~~iPD~~a 189 (262)
+|++|.|.....+. +.+. .+ +-++|+.-+|+-...+..+.+.. +=+.++|..-+
T Consensus 65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~ 124 (277)
T PRK06928 65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTS 124 (277)
T ss_pred CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHH
Confidence 99999998765433 2222 23 23478888888666666666643 33466675544
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.087 Score=55.48 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH-HhcCCccCCCCceecCCCcccccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV-TFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~-~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.|+..+|+|+|+|.||..+++.|...|..-+.++|-+- ++..-|-+.. .....+ +-++++.. .+.+.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kaeva--a~~l~~I 398 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLDVM--TERALSV 398 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHHHH--HHHHHHH
Confidence 48999999999999999999999999987777888321 1111111100 000001 00111111 1223344
Q ss_pred CceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHH---HHHHHHHCCCeEe
Q psy14499 134 PCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTE---ADDILRDKGIILA 184 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~e---a~~~l~~rgi~~i 184 (262)
+.++=|.+-.. -++.+|+..+ .+.+|+++..++.+.. ......++||.++
T Consensus 399 NP~v~I~~~~~-~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I 453 (989)
T PRK14852 399 NPFLDIRSFPE-GVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVI 453 (989)
T ss_pred CCCCeEEEEec-CCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEE
Confidence 55555544322 3466666665 5677787777754322 2223367777765
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.028 Score=52.94 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=64.5
Q ss_pred EEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhc--CCccCCCCceec--CCCcccc--c
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT--RSIKDFNEGEKI--NDSKEFW--S 132 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~--g~~~~~~~~~~~--~~~~~il--~ 132 (262)
|+|.|.|.||+.+++.|.+..- +++ |+| -+.+++.+..++. ..+.. ..+ .+.+++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~----------r~~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VAD----------RNPEKAERLAEKLLGDRVEA----VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEE----------SSHHHHHHHHT--TTTTEEE----EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEE----------CCHHHHHHHHhhccccceeE----EEEecCCHHHHHHHH
Confidence 6899999999999999998764 555 888 6888887776542 11111 111 1122222 2
Q ss_pred cCceEEeeCCccCcccccchhc---cCceEEEecCCCC-CCHHHHHHHHHCCCeEeccccccchhh
Q psy14499 133 IPCDILIPAAIEDQITINNANN---VTAKIILEGANGP-TTTEADDILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p-~t~ea~~~l~~rgi~~iPD~~aN~GGv 194 (262)
.++|++|.|++.. .+...++. .++. .++.+... ...+.++..+++|+.++++.=.+.|=.
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~-yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVH-YVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-E-EEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCC-eeccchhHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 5899999999765 33322222 2444 44422200 012234566789999998876665543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.18 Score=46.75 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.-++++|+|.|..++.-++.+.. ...+-|-|.| .++++..++.+..... ++ .....++.++.. .++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~~~~~~~~~-~~-~v~~~~~~~~av-~~A 193 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWG----------RSETALEEYRQYAQAL-GF-AVNTTLDAAEVA-HAA 193 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHhc-CC-cEEEECCHHHHh-cCC
Confidence 56799999999999999998876 3444444655 4566655544322111 11 223333234444 699
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
||++-|+.. -++..+..+ -.+-++.=|++.|-..|.+..+.++.-.++-|..
T Consensus 194 DIV~taT~s~~P~~~~~~l~-~G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~~ 247 (315)
T PRK06823 194 NLIVTTTPSREPLLQAEDIQ-PGTHITAVGADSPGKQELDAELVARADKILVDSI 247 (315)
T ss_pred CEEEEecCCCCceeCHHHcC-CCcEEEecCCCCcccccCCHHHHhhCCEEEECCH
Confidence 999988764 444444432 2566888899999777776555555533444553
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.072 Score=51.50 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=53.3
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|.|+| +|.+|+.+++.|.+.|..|+ +.| .|.+.+.+...+.+ ....++..+.+ .++|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~----------r~~~~~~~~a~~~g-------v~~~~~~~e~~-~~aDv 61 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTG----------RDPKKGKEVAKELG-------VEYANDNIDAA-KDADI 61 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEE----------CChHHHHHHHHHcC-------CeeccCHHHHh-ccCCE
Confidence 4799997 89999999999999999877 555 34444444433332 11111122333 47899
Q ss_pred EeeCCccCcccccchhc----c-CceEEEecCC
Q psy14499 138 LIPAAIEDQITINNANN----V-TAKIILEGAN 165 (262)
Q Consensus 138 lipaa~~~~it~e~a~~----~-~~kiIve~AN 165 (262)
+|-|.+.+.+. +.+.+ + ...+|++-+.
T Consensus 62 VIlavp~~~~~-~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 62 VIISVPINVTE-DVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred EEEecCHHHHH-HHHHHHHhhCCCCCEEEEccc
Confidence 99888765442 22222 3 2346777665
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.014 Score=59.76 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
.|+..+|+|+|.| +|+.++.+|.+.|. +++ ++|.
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~ 139 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADF 139 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcC
Confidence 4789999999999 99999999999995 554 8874
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.085 Score=48.10 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=64.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+. +++++.+.+++|++++|+|-+ .||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 137 ~~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T-------~~l~-------- 196 (278)
T PRK14172 137 FLPCTPNSVI----TLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKT-------KNLK-------- 196 (278)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 4578888774 456677899999999999974 589999999999999987 887521 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEec
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEG 163 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~ 163 (262)
++. ..+||+|-|.. .+.++++.++. ..+|++.
T Consensus 197 -----------------~~~-~~ADIvIsAvGkp~~i~~~~ik~--gavVIDv 229 (278)
T PRK14172 197 -----------------EVC-KKADILVVAIGRPKFIDEEYVKE--GAIVIDV 229 (278)
T ss_pred -----------------HHH-hhCCEEEEcCCCcCccCHHHcCC--CcEEEEe
Confidence 111 46888888776 57788777653 2344443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.093 Score=47.64 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d 34 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLD 34 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEe
Confidence 579999999999999999999999887 667
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.057 Score=46.52 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D 89 (262)
-||-|-.-.....+.+|.+ +..+++|+|.||.|++++.+- .+.+.+++++.|
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FD 117 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFD 117 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEec
Confidence 4566655556666667777 778999999999999999663 467999999999
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.14 Score=48.88 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
...+-|+|++.+|+++|-.+.++|++|. |.+ -+.++..++.++.+.-..+.+...+++.-.-++.|=-|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~Va-vyN----------Rt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI 71 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVA-VYN----------RTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKI 71 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEE-EEe----------CCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceE
Confidence 3567899999999999999999999976 655 25666666666554322222222121011112233333
Q ss_pred EeeCCccCccc---ccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQIT---INNANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it---~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
++-..-+..++ .+-.+-+ +..||++|.|.-. |-.-.+.|.++||.++
T Consensus 72 ~lMVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 72 LLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred EEEEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 33322222222 2223333 6779999999987 4455688999999988
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.059 Score=49.10 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ ..++++.+.++.|++++|+|-++ ||+-++.+|...+++|. ||.+
T Consensus 135 ~~PCTp~gi----~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs 188 (283)
T COG0190 135 FLPCTPAGI----MTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHS 188 (283)
T ss_pred CCCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcC
Confidence 457888887 45677789999999999999887 89999999999999988 8875
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.052 Score=51.71 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 368899999999999999999999999877778884
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.22 Score=48.64 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.+++|+|+|+|..|.+++++|...|++|+ ++|
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D 42 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCD 42 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEc
Confidence 367899999999999999999999999988 688
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.025 Score=50.54 Aligned_cols=35 Identities=23% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|++.+|+|+|.|.||+++++.|.+-|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 68899999999999999999999999765557774
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.076 Score=52.29 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-++|+|+|.|.+|+.+|..|...|+.|+ +.|
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d 35 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVL-LYD 35 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEE-EEe
Confidence 3579999999999999999999999988 777
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.091 Score=48.12 Aligned_cols=53 Identities=17% Similarity=0.340 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.+++|++++|+|- ..||+-++.+|.+.+++|+ +|.+
T Consensus 134 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs 187 (287)
T PRK14173 134 LEPCTPAGVV----RLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHS 187 (287)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCC
Confidence 4678988875 45567799999999999997 5589999999999999987 7764
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.074 Score=48.64 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..||. +++++.|.++.|++|+|+|-++ ||+-++.+|.+.+++|+ +|.++. -|+.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T-------~~l~-------- 195 (284)
T PRK14170 136 FVPCTPAGII----ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT-------KDLP-------- 195 (284)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH--------
Confidence 3578887774 4556789999999999999755 89999999999999987 877522 1111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+.. ..+||+|-|.. .+.++++..+.
T Consensus 196 -----------------~~~-~~ADIvI~AvG~~~~i~~~~vk~ 221 (284)
T PRK14170 196 -----------------QVA-KEADILVVATGLAKFVKKDYIKP 221 (284)
T ss_pred -----------------HHH-hhCCEEEEecCCcCccCHHHcCC
Confidence 111 36788887765 47777776664
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.091 Score=47.88 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC------CceecCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN------EGEKINDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~------~~~~~~~~~~il~ 132 (262)
++|+|+|.|++|..++..|.+.|..|. +.| .+.+.+.+..+........+ +....++.++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 69 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWA----------RDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL- 69 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH-
Confidence 479999999999999999999999875 666 34444444443211111011 122222122233
Q ss_pred cCceEEeeCCccCcccccchhc----c-CceEEEecCCCC
Q psy14499 133 IPCDILIPAAIEDQITINNANN----V-TAKIILEGANGP 167 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~----~-~~kiIve~AN~p 167 (262)
.+||++|-|.....+ .+.... + ..++|+.-.|+-
T Consensus 70 ~~~D~vi~~v~~~~~-~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 70 ADADLILVAVPSQAL-REVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred hCCCEEEEeCCHHHH-HHHHHHHHhhcCCCCEEEEEeecc
Confidence 489999999876432 222222 2 235777776653
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.14 Score=49.74 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC-----CCEEEEEeCCCc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDDKT 92 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~-----g~~vv~V~D~~G 92 (262)
+.+.++|+|-|||.+|+.++|.+.+. +.++++|.++.+
T Consensus 124 ~~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 124 DIEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 36788999999999999999998764 689999976544
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.046 Score=46.21 Aligned_cols=32 Identities=31% Similarity=0.452 Sum_probs=27.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998755588853
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.36 Score=46.74 Aligned_cols=98 Identities=19% Similarity=0.353 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---C-C------C
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---F-N------E 120 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~-~------~ 120 (262)
+..||+|.|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.. + . +
T Consensus 74 ~~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~ 144 (442)
T PLN02237 74 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTFKADVKIVDDETISVD 144 (442)
T ss_pred ceEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCcCCceEECCCCEEEEC
Confidence 447999999999999999987643 5899988773 35544333222 3343321 0 0 1
Q ss_pred cee---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 121 GEK---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 121 ~~~---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.+. .+ ++.++ | +.++|++++|+.. ..+.+.+... .||.|.-.|
T Consensus 145 Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~-f~s~e~a~~hl~aGAkkV~iSA 197 (442)
T PLN02237 145 GKPIKVVSNRDPLKLPWAELGIDIVIEGTGV-FVDGPGAGKHIQAGAKKVIITA 197 (442)
T ss_pred CEEEEEEEcCCchhCChhhcCCCEEEEccCh-hhhHHHHHHHHhCCCEEEEECC
Confidence 111 11 12232 3 4689999999964 4566655544 576554443
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.23 Score=46.67 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|.+|+++++.|.+.|..+. +.| ++++ ...+... ...+.+.. ..++..+.. .+||++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~-i~~-----~~~~---~~~~~~a-~~~~~~~~-----~~~~~~~~~-~~aDlV 64 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVF-IIG-----YDPS---AAQLARA-LGFGVIDE-----LAADLQRAA-AEADLI 64 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeE-EEE-----eCCC---HHHHHHH-hcCCCCcc-----cccCHHHHh-cCCCEE
Confidence 479999999999999999999998765 555 2222 1222111 11111110 011112233 589999
Q ss_pred eeCCccCcccccchhc-----cC-ceEEEecCCCCC--CHHHHHHHHHCCCeEec-cccccc--hhhHHHHHHHHhh
Q psy14499 139 IPAAIEDQITINNANN-----VT-AKIILEGANGPT--TTEADDILRDKGIILAP-DVITNA--GGVIVSYFEWVQN 204 (262)
Q Consensus 139 ipaa~~~~it~e~a~~-----~~-~kiIve~AN~p~--t~ea~~~l~~rgi~~iP-D~~aN~--GGvi~s~~E~~~~ 204 (262)
|.|.+...+ .+...+ ++ ..+|...+.... ..++ +.+..++..+++ -+++|+ .|+-.+..+..++
T Consensus 65 ilavP~~~~-~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~-~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g 139 (359)
T PRK06545 65 VLAVPVDAT-AALLAELADLELKPGVIVTDVGSVKGAILAEA-EALLGDLIRFVGGHPMAGSHKSGVAAARADLFEN 139 (359)
T ss_pred EEeCCHHHH-HHHHHHHhhcCCCCCcEEEeCccccHHHHHHH-HHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCC
Confidence 999987643 222222 22 235554333322 1222 222345667776 457764 4554444444333
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.13 Score=37.22 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=35.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHH
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
||+|+|.|.+|..+|..|.+.|.+|+ +.+....+. ..+|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999987 777666665 4477664
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.086 Score=48.24 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=52.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHH-HHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKL-QKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l-~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.+|+|+|.|++|+..+..+. ..+..+++|+| .|+++. ++..++.|-- ...++.++++. -+.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d----------~d~es~~la~A~~~Gi~------~~~~~~e~ll~~~dI 65 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVG----------IDPESDGLARARELGVK------TSAEGVDGLLANPDI 65 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEe----------CCcccHHHHHHHHCCCC------EEECCHHHHhcCCCC
Confidence 58999999999998765554 56899999999 565432 1233333211 11221334443 478
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEe
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILE 162 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve 162 (262)
|+++.|++.. .+.+.+... .+.+|.+
T Consensus 66 DaV~iaTp~~-~H~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 66 DIVFDATSAK-AHARHARLLAELGKIVIDL 94 (285)
T ss_pred CEEEECCCcH-HHHHHHHHHHHcCCEEEEC
Confidence 9999999754 555555544 3445444
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.57 Score=43.44 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
..++++|+|.|..++..++.|.. .+.+-+.|.+ -+.++..++.++...-.+. .....++.++.+ .++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~----------R~~~~a~~~a~~~~~~~g~-~v~~~~~~~~av-~~a 195 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWA----------RDSAKAEALALQLSSLLGI-DVTAATDPRAAM-SGA 195 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEEC----------CCHHHHHHHHHHHHhhcCc-eEEEeCCHHHHh-ccC
Confidence 56799999999999999999974 6777676877 4666655554432110011 112223233344 489
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
||++-|+.. -+++.+..+. .+.+..=|+..|.-.|.+..+.++--.|+-|..
T Consensus 196 DiVvtaT~s~~p~i~~~~l~~-g~~i~~vg~~~p~~rEld~~~l~~a~~~vvD~~ 249 (326)
T TIGR02992 196 DIIVTTTPSETPILHAEWLEP-GQHVTAMGSDAEHKNEIDPAVIAKADHYVADRL 249 (326)
T ss_pred CEEEEecCCCCcEecHHHcCC-CcEEEeeCCCCCCceecCHHHHhccCEEEcCCH
Confidence 999999875 3344443322 344555677777655544333333333544543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.099 Score=48.16 Aligned_cols=53 Identities=25% Similarity=0.345 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.++|..||. +++++.|.+++|++++|+|=++ ||+-++.+|.+.|++|+ +|.+
T Consensus 146 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs 199 (299)
T PLN02516 146 FLPCTPKGCL----ELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHS 199 (299)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCC
Confidence 4679998864 4556779999999999999755 89999999999999988 8875
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.097 Score=47.96 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.8
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|| .+++++.+.+++|++++|+|-++ ||+-++.+|.+.+++|+ +|.+
T Consensus 138 ~~PcTp~av----~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs 191 (288)
T PRK14171 138 FIPCTALGC----LAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHS 191 (288)
T ss_pred CcCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 467888886 45666779999999999999755 89999999999999987 8875
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.1 Score=47.97 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=61.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.++|..||. +++++.+.+++|++++|+|-++ ||+-++.+|.+.+++|+ +|+++. -|+.
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T-------~~l~--------- 198 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT-------RDLA--------- 198 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC-------CCHH---------
Confidence 568888874 5667789999999999999755 89999999999999988 887522 1111
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+. ...+||+|-|.. .+.++++.++.
T Consensus 199 ----------------~~-~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 199 ----------------DY-CSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred ----------------HH-HhhCCEEEEccCCcCccCHHHcCC
Confidence 11 147788887765 47777776663
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.096 Score=47.91 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+ .+++++.+.+++|++++|+|= ..||+-++.+|.+.+++|+ +|++
T Consensus 137 ~~PcTp~av----~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 137 FLPCTPHGI----LELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCCHHHH----HHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 356888777 456677899999999999997 5599999999999999988 7764
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.11 Score=47.72 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.++|..|+ .+++++.|.+++|++++|+|=++ ||+-++.+|.+.|++|+ +|.+
T Consensus 138 ~PcTp~ai----i~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs 190 (297)
T PRK14186 138 RSCTPAGV----MRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHS 190 (297)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCC
Confidence 46888777 45667779999999999999754 89999999999999987 7764
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.11 Score=52.79 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+.++|.|+|+|++|+.+++.|.+.|.+|++ .|. +... +..++.| .....+.+++...++|
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~-~dr----------~~~~--~~A~~~G-------v~~~~d~~e~~~~~aD 110 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLA-HSR----------SDHS--LAARSLG-------VSFFLDPHDLCERHPD 110 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEE-EeC----------CHHH--HHHHHcC-------CEEeCCHHHHhhcCCC
Confidence 457999999999999999999999998874 442 2111 1122222 1112223444434689
Q ss_pred EEeeCCccCcccccchhc-----cC-ceEEEecC
Q psy14499 137 ILIPAAIEDQITINNANN-----VT-AKIILEGA 164 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~-----~~-~kiIve~A 164 (262)
+++-|.+... +.+.+.. ++ -.+|++-.
T Consensus 111 vViLavP~~~-~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 111 VILLCTSIIS-TENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred EEEEcCCHHH-HHHHHHhhhhhcCCCCeEEEECC
Confidence 9999987543 2332222 22 34777764
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.08 Score=49.05 Aligned_cols=145 Identities=20% Similarity=0.302 Sum_probs=92.4
Q ss_pred CCChhHH-HHHHHHHHHHHHhC--------C-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCH
Q psy14499 33 RQKATGR-GVFIIGSKIASKIN--------L-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 102 (262)
Q Consensus 33 ~~~aTg~-Gv~~~~~~~~~~~g--------~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~ 102 (262)
-++..|+ ++..+....-|..| . -...-+|+|+|.|-||.+.|++..-.|++|+ |.| +++
T Consensus 133 MSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild----------~n~ 201 (371)
T COG0686 133 MSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILD----------LNI 201 (371)
T ss_pred HHHHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeE-EEe----------cCH
Confidence 3667777 66555555444322 2 2466789999999999999999999999988 989 888
Q ss_pred HHHHHHHHhcC-CccCCCCceecCCCccccc--cCceEEe-----eCC-ccCcccccchhccC-ceEEEecCCCC-----
Q psy14499 103 PKLQKYVTFTR-SIKDFNEGEKINDSKEFWS--IPCDILI-----PAA-IEDQITINNANNVT-AKIILEGANGP----- 167 (262)
Q Consensus 103 ~~l~~~~~~~g-~~~~~~~~~~~~~~~~il~--~~~DIli-----paa-~~~~it~e~a~~~~-~kiIve~AN~p----- 167 (262)
++|..+...++ ++. +.++++..+-+ .++|++| |.+ .+..++.+..++++ ..+|++-|=-+
T Consensus 202 ~rl~~ldd~f~~rv~-----~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E 276 (371)
T COG0686 202 DRLRQLDDLFGGRVH-----TLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE 276 (371)
T ss_pred HHHhhhhHhhCceeE-----EEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence 88877765433 111 12232222221 3677666 433 35778888888883 44555544222
Q ss_pred ---CCHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 168 ---TTTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 168 ---~t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
.|.-.+..+++.|+.+- -++|--|.+
T Consensus 277 t~~~TTh~~PtY~~~gvvhY--~VaNmPgaV 305 (371)
T COG0686 277 TSHPTTHDDPTYEVDGVVHY--GVANMPGAV 305 (371)
T ss_pred ccccccCCCCceeecCEEEE--ecCCCCccc
Confidence 13334566778887553 677777775
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=47.39 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=64.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.++|..||. +++++.+.+++|++|+|+|=+ .||+-++.+|.+.+++|+ +|.++- -|+.
T Consensus 137 ~PcTp~avi----~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T-------~nl~--------- 195 (282)
T PRK14166 137 LPCTPLGVM----KLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT-------KDLS--------- 195 (282)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH---------
Confidence 578888875 455667999999999999975 489999999999999988 877421 0111
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+. ...+||+|-|.. .+.++++.++. ..+|++-.
T Consensus 196 ----------------~~-~~~ADIvIsAvGkp~~i~~~~vk~--GavVIDvG 229 (282)
T PRK14166 196 ----------------LY-TRQADLIIVAAGCVNLLRSDMVKE--GVIVVDVG 229 (282)
T ss_pred ----------------HH-HhhCCEEEEcCCCcCccCHHHcCC--CCEEEEec
Confidence 11 147888888876 57788776653 23444433
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.64 Score=43.71 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=84.3
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=...+---+++++..+ .-.+++|+|.|..++.-++.+.. +..+=|-|.+ .++++..++.+
T Consensus 104 dg~~lT~~RTaA~sala~~~Lar~-da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~----------r~~~~a~~~~~ 172 (346)
T PRK07589 104 EMTLLTALRTAATSALAAKYLARP-DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYD----------IDPAATAKLAR 172 (346)
T ss_pred cCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe----------CCHHHHHHHHH
Confidence 445566655444444445555443 56799999999999999887765 4455554655 46666555544
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCccC----cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED----QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~----~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
+-... ++ +....++.++.. .++||++=|+.+. ++..+.. +-.+.+..=|++.|-..|.+..+-++.-.|+ |
T Consensus 173 ~~~~~-~~-~v~~~~~~~~av-~~ADIIvtaT~S~~~~Pvl~~~~l-kpG~hV~aIGs~~p~~~Eld~~~l~~a~v~v-D 247 (346)
T PRK07589 173 NLAGP-GL-RIVACRSVAEAV-EGADIITTVTADKTNATILTDDMV-EPGMHINAVGGDCPGKTELHPDILRRARVFV-E 247 (346)
T ss_pred HHHhc-CC-cEEEeCCHHHHH-hcCCEEEEecCCCCCCceecHHHc-CCCcEEEecCCCCCCcccCCHHHHhcCEEEE-C
Confidence 32211 11 122233344444 5899999988642 2444433 2256688889999987777655545543344 6
Q ss_pred cc
Q psy14499 187 VI 188 (262)
Q Consensus 187 ~~ 188 (262)
..
T Consensus 248 ~~ 249 (346)
T PRK07589 248 YE 249 (346)
T ss_pred CH
Confidence 54
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=47.39 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=61.3
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
..+.|..|+.. ++++.+.+++|++++|+|=+ .||+-++.+|.+.+++|+ +|.++- -|+.
T Consensus 137 ~~PcTp~aii~----lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~T-------~dl~-------- 196 (282)
T PRK14180 137 LESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT-------TDLK-------- 196 (282)
T ss_pred cCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCCC-------CCHH--------
Confidence 45788888754 55667999999999999975 589999999999999987 776421 0111
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhc
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANN 154 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~ 154 (262)
+. ...+||+|-|.. .+.++++.++.
T Consensus 197 -----------------~~-~k~ADIvIsAvGkp~~i~~~~vk~ 222 (282)
T PRK14180 197 -----------------SH-TTKADILIVAVGKPNFITADMVKE 222 (282)
T ss_pred -----------------HH-hhhcCEEEEccCCcCcCCHHHcCC
Confidence 11 147888888765 57777766653
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.76 Score=41.88 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
++..+.. .+.+|+|.|.|.||..+++++...|++ |++ +|
T Consensus 156 l~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~-~~ 195 (339)
T cd08239 156 LRRVGVS-GRDTVLVVGAGPVGLGALMLARALGAEDVIG-VD 195 (339)
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEE-EC
Confidence 3334433 489999999999999999999999999 774 44
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.47 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
..+.+|+|+|.|.||..+++++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 368899999999999999999999999988543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.68 Score=43.30 Aligned_cols=143 Identities=13% Similarity=0.081 Sum_probs=87.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+-...|++=.+.+=--+++++... .-.+++|+|.|..++.-++.+.+ ++.+=+-|.+ -+++...++..
T Consensus 105 d~~~lTa~RTaAasavAa~~LA~~-da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~----------r~~~~~e~~a~ 173 (330)
T COG2423 105 DATRLTALRTAAASAVAAKYLARK-DASTLAIIGAGAQARTQLEALKAVRDIREIRVYS----------RDPEAAEAFAA 173 (330)
T ss_pred cCccHHHHHHHHHHHHHHHHhccC-CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEc----------CCHHHHHHHHH
Confidence 445556655555444556666543 45689999999999999999977 4665565766 46666655543
Q ss_pred hcCCccCCC-CceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 111 FTRSIKDFN-EGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 111 ~~g~~~~~~-~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
.-.. .++ .....++.++.. .++||++-|+.+. ++..+..+ -...|..=|+|.|--.|.+..+..|-=.++.|.
T Consensus 174 ~l~~--~~~~~v~a~~s~~~av-~~aDiIvt~T~s~~Pil~~~~l~-~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~ 249 (330)
T COG2423 174 RLRK--RGGEAVGAADSAEEAV-EGADIVVTATPSTEPVLKAEWLK-PGTHINAIGADAPGKRELDPEVLARADRVVVDS 249 (330)
T ss_pred HHHh--hcCccceeccCHHHHh-hcCCEEEEecCCCCCeecHhhcC-CCcEEEecCCCCcccccCCHHHHHhcCeEEEcC
Confidence 2111 111 123333233444 4899999999853 33443333 245677788888877776655555543455566
Q ss_pred cc
Q psy14499 188 IT 189 (262)
Q Consensus 188 ~a 189 (262)
..
T Consensus 250 ~~ 251 (330)
T COG2423 250 LE 251 (330)
T ss_pred HH
Confidence 54
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.25 Score=44.48 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=56.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc-cC-CC-CceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI-KD-FN-EGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~-~~-~~-~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|++|..++..|.+.|..|+ +.++ +.+.+....+..-.+ .+ .. .....++..++ .++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~-~~~r----------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~ 67 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVT-LVAR----------RGAHLDALNENGLRLEDGEITVPVLAADDPAEL--GPQ 67 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------ChHHHHHHHHcCCcccCCceeecccCCCChhHc--CCC
Confidence 479999999999999999999999887 4442 222333332221111 00 00 00111212222 589
Q ss_pred eEEeeCCccCcccccchhcc----Cc-eEEEecCCCCCCHH
Q psy14499 136 DILIPAAIEDQITINNANNV----TA-KIILEGANGPTTTE 171 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~----~~-kiIve~AN~p~t~e 171 (262)
|+++-|.....+ .+.+..+ .. ..|+-..|+.-..+
T Consensus 68 d~vila~k~~~~-~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 68 DLVILAVKAYQL-PAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred CEEEEecccccH-HHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 999999876543 3333333 22 46778888765444
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=47.14 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|..||. +++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 137 ~PcTp~avi----~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs 189 (282)
T PRK14182 137 RPCTPAGVM----RMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHS 189 (282)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCC
Confidence 578888774 4567779999999999999755 89999999999999887 7764
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.48 Score=44.46 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D 89 (262)
.||+|.|||.+|+.+.|.+.+ .+..+|+|-|
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd 34 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVND 34 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecC
Confidence 589999999999999999765 4689999977
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.58 Score=43.04 Aligned_cols=118 Identities=11% Similarity=0.100 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.-++++|+|.|.-++.-++.+.. ...+=|-|.| -++++..++.++.....+. ..+..++.++.. .++
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~----------r~~~~a~~f~~~~~~~~~~-~v~~~~~~~eav-~~a 183 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYS----------RNFDHARAFAERFSKEFGV-DIRPVDNAEAAL-RDA 183 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEEC----------CCHHHHHHHHHHHHHhcCC-cEEEeCCHHHHH-hcC
Confidence 67899999999999999998876 3555554655 4566655554432211011 223333344555 699
Q ss_pred eEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 136 DILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
||++-|+.. -+++.+..+. .+.+..=|++.|-..|....+.++.-.++-|.
T Consensus 184 DIV~taT~s~~P~~~~~~l~p-g~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 184 DTITSITNSDTPIFNRKYLGD-EYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred CEEEEecCCCCcEecHHHcCC-CceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 999988764 4455554443 56788889999987777655555553344453
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.12 Score=52.92 Aligned_cols=111 Identities=15% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
-.+|.|+|+|++|..+++.|.+.|. +|+ +.| .+.+++....+ .|.... ..++..+.+ .++
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~-~~d----------~~~~~~~~a~~-~g~~~~-----~~~~~~~~~-~~a 64 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVV-AVD----------RRAKSLELAVS-LGVIDR-----GEEDLAEAV-SGA 64 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEE-EEE----------CChhHHHHHHH-CCCCCc-----ccCCHHHHh-cCC
Confidence 4689999999999999999999883 655 556 34455443332 232100 011122333 489
Q ss_pred eEEeeCCccCcccccchhcc----C-ceEEEecCCCC--CCHHHHHHHHHCCCeEeccc
Q psy14499 136 DILIPAAIEDQITINNANNV----T-AKIILEGANGP--TTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~----~-~kiIve~AN~p--~t~ea~~~l~~rgi~~iPD~ 187 (262)
|+++.|.+...+ .+....+ + ..+|...+... +..+..+.+.+..+.++|.-
T Consensus 65 DvVilavp~~~~-~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~h 122 (735)
T PRK14806 65 DVIVLAVPVLAM-EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGH 122 (735)
T ss_pred CEEEECCCHHHH-HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecC
Confidence 999999876533 2222222 2 23666555433 23444445444455666544
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.15 Score=47.87 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..||.. ++++.+.+++|++++|+|=++ ||+-++.+|.+.+++|+ +|.+
T Consensus 193 ~~PCTp~avi~----LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs 246 (345)
T PLN02897 193 FVSCTPKGCVE----LLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHA 246 (345)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcC
Confidence 46789988854 556779999999999999755 89999999999999987 7764
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.31 Score=45.47 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CeEEEEcCCHHHH-HHHHHH-HH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 59 SKISIQGFGNVGS-VAANLF-FK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L-~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
.||+|+|+|..++ .-+..+ .. .+..+++|+| .|.++. +..++.+ ....+++.+++++ .+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d----------~~~~~~-~~~~~~~------~~~~~~~~~ell~~~~ 64 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFR----------RHAKPE-EQAPIYS------HIHFTSDLDEVLNDPD 64 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEc----------CChhHH-HHHHhcC------CCcccCCHHHHhcCCC
Confidence 5899999999765 334544 33 4799999999 344332 3333322 2223343566764 57
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccc
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDV 187 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~ 187 (262)
.|+++-|++ +..+.+.+... ...+++|=.=.....|++++ .+++|+.+...+
T Consensus 65 iD~V~I~tp-~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~ 122 (344)
T PRK10206 65 VKLVVVCTH-ADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQ 122 (344)
T ss_pred CCEEEEeCC-chHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 899999886 44455554443 33477764333333555444 466787765433
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.27 Score=44.74 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=68.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEE-eCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAI-QDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V-~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
.+|+|.|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|...+... .+.-.+......+.+++++..+|
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d 70 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPE 70 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCC
Confidence 37999997 999999999998899999986 45322 23344443221 11000011111224455655588
Q ss_pred -EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHH---CCCeEeccccc
Q psy14499 137 -ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRD---KGIILAPDVIT 189 (262)
Q Consensus 137 -Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~---rgi~~iPD~~a 189 (262)
|+|+-+.+..... +-+.+.+..+|+.-.. ++++-.+.|.+ -++++.|.|..
T Consensus 71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG--~~~~~~~~l~~~~~i~~l~apNfSi 127 (275)
T TIGR02130 71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTG--GDREALAKLVADAKHPAVIAPNMAK 127 (275)
T ss_pred EEEEECCChHHHHHHHHHHHHCCCCEEEcCCC--CCHHHHHHHHHhcCCCEEEECcccH
Confidence 9999997765533 2233335556665443 44444444433 46777787755
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.13 Score=46.21 Aligned_cols=70 Identities=27% Similarity=0.331 Sum_probs=45.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|.|+|+|++|+.+++.|.+.|. .|+ +.| .+.+.+....+ .|.... ..+..++. +||
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d----------~~~~~~~~~~~-~g~~~~------~~~~~~~~--~aD 60 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYD----------HNELHLKKALE-LGLVDE------IVSFEELK--KCD 60 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEc----------CCHHHHHHHHH-CCCCcc------cCCHHHHh--cCC
Confidence 379999999999999999999885 444 455 45555444432 222111 11133443 499
Q ss_pred EEeeCCccCccc
Q psy14499 137 ILIPAAIEDQIT 148 (262)
Q Consensus 137 Ilipaa~~~~it 148 (262)
++|-|.+...+.
T Consensus 61 ~Vilavp~~~~~ 72 (275)
T PRK08507 61 VIFLAIPVDAII 72 (275)
T ss_pred EEEEeCcHHHHH
Confidence 999998765543
|
|
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.3 Score=45.70 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK---AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~---~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~ 132 (262)
...|+.|.|+|.+++.+++.|.. .+++|++|+|. +.+...+..++++ +|..+.+++-++++ +
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~----------s~~~A~~fAq~~~----~~~~k~y~syEeLakd 70 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP----------SLERAKEFAQRHN----IPNPKAYGSYEELAKD 70 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc----------cHHHHHHHHHhcC----CCCCccccCHHHHhcC
Confidence 46789999999999999999875 47999999983 5666666666543 44444455456666 4
Q ss_pred cCceEEeeCCccCcccccchhcc--Cce-EEEecCCCCCCHHHHHHH---HHCCCeEec
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAK-IILEGANGPTTTEADDIL---RDKGIILAP 185 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~k-iIve~AN~p~t~ea~~~l---~~rgi~~iP 185 (262)
-++|++.=.+ ++..+-+-+..+ +.| +.||=+=...-+|+++++ ++||+.++=
T Consensus 71 ~~vDvVyi~~-~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 71 PEVDVVYIST-PNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred CCcCEEEeCC-CCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEe
Confidence 6789876544 566666665554 333 777754444447787777 679987763
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.17 Score=47.72 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=45.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+. +++++.+.+++|++|+|+|=.+ ||+-++.+|.+.+++|+ +|.+
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs 263 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHS 263 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCC
Confidence 4679998864 5667779999999999999754 89999999999999987 7764
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.14 Score=47.19 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=47.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----CC-CceecCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----FN-EGEKINDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~~-~~~~~~~~~~il~ 132 (262)
++|.|+|.|++|..++..|.+.|..|. +.+ -|.+.+....+.+..... +| .....++..+.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~----------r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 69 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWG----------RNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS 69 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEe----------cCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh
Confidence 369999999999999999999998886 655 244444444433222211 11 1111121223333
Q ss_pred cCceEEeeCCccCcc
Q psy14499 133 IPCDILIPAAIEDQI 147 (262)
Q Consensus 133 ~~~DIlipaa~~~~i 147 (262)
.++|+++-|..+..+
T Consensus 70 ~~~Dliiiavks~~~ 84 (326)
T PRK14620 70 DNATCIILAVPTQQL 84 (326)
T ss_pred CCCCEEEEEeCHHHH
Confidence 478999988776544
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.054 Score=43.39 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+||+|.|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 3579999999999999999999999866668884
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.11 Score=45.05 Aligned_cols=52 Identities=31% Similarity=0.312 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D 89 (262)
.||-|..-+...=+.+|.. ...+|+|+|+|++|+.+++.+ ...|+++++++|
T Consensus 64 ~gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D 117 (213)
T PRK05472 64 VGYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFD 117 (213)
T ss_pred CCeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEE
Confidence 3566666555555555666 668999999999999999864 356899999998
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.2 Score=45.87 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHH--CCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFK--AGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~--~g~~vv~V~D~ 90 (262)
-.++|..||.. ++++.|.+++|++++|+|- ..||+-++.+|.+ .+++|+ +|.+
T Consensus 137 ~~PcTp~av~~----ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs 192 (284)
T PRK14193 137 PLPCTPRGIVH----LLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHT 192 (284)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCC
Confidence 35789888854 5567799999999999996 5599999999998 789887 8875
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.19 Score=46.20 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=63.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC-HHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHH
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG-NVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQK 107 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG-~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~ 107 (262)
-.+.|..|+. +++++.+.+++|++|+|+|=+ .||+-++.+|.++ +++|+ +|.++- -|+.
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T-------~~l~---- 199 (297)
T PRK14167 136 FKPCTPHGIQ----KLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRT-------DDLA---- 199 (297)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCC-------CCHH----
Confidence 3568888774 556777999999999999975 4899999999887 78877 776421 0111
Q ss_pred HHHhcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecC
Q psy14499 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGA 164 (262)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~A 164 (262)
+. ...+||+|-|.. .+.++++.++. ..+|++..
T Consensus 200 ---------------------~~-~~~ADIvIsAvGkp~~i~~~~ik~--gaiVIDvG 233 (297)
T PRK14167 200 ---------------------AK-TRRADIVVAAAGVPELIDGSMLSE--GATVIDVG 233 (297)
T ss_pred ---------------------HH-HhhCCEEEEccCCcCccCHHHcCC--CCEEEEcc
Confidence 11 147888888765 57777766663 23444433
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.14 Score=44.09 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++..+|.|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~ 51 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDH 51 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 57899999999999999999999999877768875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.084 Score=41.60 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=43.6
Q ss_pred eEEEEc-CCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 60 KISIQG-FGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 60 ~v~IqG-fG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
||+|+| .|.+|+.++++|.++ .+.++.+..++- ..|..+...... ...+.+....+...+.+ .++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVFPH------PKGFEDLSVEDADPEEL-SDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTTGG------GTTTEEEBEEETSGHHH-TTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhccc------cccccceeEeecchhHh-hcCCE
Confidence 789999 999999999999884 678887776422 245555443221 11111111111011222 68999
Q ss_pred EeeCCccC
Q psy14499 138 LIPAAIED 145 (262)
Q Consensus 138 lipaa~~~ 145 (262)
++-|+..+
T Consensus 70 vf~a~~~~ 77 (121)
T PF01118_consen 70 VFLALPHG 77 (121)
T ss_dssp EEE-SCHH
T ss_pred EEecCchh
Confidence 99997643
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.6 Score=42.19 Aligned_cols=40 Identities=33% Similarity=0.346 Sum_probs=32.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
.++|.|+|.|.||..+|..|.+ |+.|+ +.| +|.+++..+.
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D----------~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFD----------VNKKRILELK 45 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEE-EEe----------CCHHHHHHHH
Confidence 4789999999999999999876 68887 667 6777766655
|
|
| >KOG2018|consensus | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.21 Score=46.39 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++.=|+|+|+|.||++++.+|.+-|.+=+-|.|
T Consensus 71 kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 71 KLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HhcCcEEEEEecCchhHHHHHHHHHhcCceEEEec
Confidence 47889999999999999999999999986665776
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.38 Score=37.86 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred CeEEEEc----CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQG----FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqG----fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++|+|+| -++.|..+.+.|.+.|++|+.|.-.. +.+.+ ...+++..++ ..+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~---------------------~~i~G---~~~y~sl~e~-p~~ 55 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKG---------------------GEILG---IKCYPSLAEI-PEP 55 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTC---------------------SEETT---EE-BSSGGGC-SST
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCc---------------------eEECc---EEeeccccCC-CCC
Confidence 5899999 58999999999999999998763221 11111 1222223332 468
Q ss_pred ceEEeeCCccCcccc--cchhccCce-EEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITI--NNANNVTAK-IILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~--e~a~~~~~k-iIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.|+++-|......-+ +.+..+.++ +++-.. ...+++.+.+++.|+.++
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 888888876533321 223333344 333333 567889999999999997
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.22 Score=45.72 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=43.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
-.+.|..||. +++++.+.++.|++|+|+|-++ ||+-++.+|.+. +++|+ +|.+
T Consensus 136 ~~PcTp~av~----~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs 193 (293)
T PRK14185 136 FVSATPNGIL----ELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHS 193 (293)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecC
Confidence 4578888874 4566778999999999999755 899999999988 68877 7765
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=3.6 Score=38.55 Aligned_cols=40 Identities=0% Similarity=-0.125 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q psy14499 219 LNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 258 (262)
Q Consensus 219 l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a~~ 258 (262)
+-........+.+..+++.+.+|++.+..++.+-+....+
T Consensus 207 l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~ 246 (342)
T PRK12557 207 VTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMAS 246 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4444455667778888899999999999999988876554
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.54 Score=42.51 Aligned_cols=119 Identities=17% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.++|+|.|+ |.+|+.+++.+.+. +..+++..|+.+.... |-|..++.- .+.+ ..++.+.......++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~--g~d~ge~~g----~~~~-----gv~v~~~~~~~~~~~ 70 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSL--GSDAGELAG----LGLL-----GVPVTDDLLLVKADA 70 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCcccc--ccchhhhcc----cccc-----CceeecchhhcccCC
Confidence 468999999 99999999999875 6999999997665432 334443311 0111 112221223345799
Q ss_pred eEEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHH----HHHHCCCeEeccccc
Q psy14499 136 DILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADD----ILRDKGIILAPDVIT 189 (262)
Q Consensus 136 DIlipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~----~l~~rgi~~iPD~~a 189 (262)
||+|+-+.+...- -+.+.+.+-++|++-.. +|++-.+ ..++-++++.|.|..
T Consensus 71 DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTG--f~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 71 DVLIDFTTPEATLENLEFALEHGKPLVIGTTG--FTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred CEEEECCCchhhHHHHHHHHHcCCCeEEECCC--CCHHHHHHHHHHHhhCCEEEeccchH
Confidence 9999999764332 22333334445654332 3444333 334457788888765
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.5 Score=41.08 Aligned_cols=96 Identities=22% Similarity=0.360 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Cceec-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEKI- 124 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~~- 124 (262)
.+|+|.|||.+|+.+.+.+.+. ..+++++.|. ..|++.+.-+.+ .+|++..- . +.+.+
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~--------~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~ 74 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP--------AGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIR 74 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC--------CCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEE
Confidence 6899999999999999998764 6899988762 135554433322 34433210 0 11111
Q ss_pred -C---CCccc-cccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 125 -N---DSKEF-WSIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 125 -~---~~~~i-l~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
. +++++ |+ ++|++++|+.. ..+.+-+... .|| ++..++
T Consensus 75 v~~~~~~~~~~w~-gvDiVle~tG~-~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 75 TTQNKAIADTDWS-GCDVVIEASGV-MKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred EEecCChhhCCcc-CCCEEEEccch-hhcHHHHHHHHHCCCEEEEECCC
Confidence 1 23332 44 99999999964 4566666554 566 444444
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.26 Score=48.07 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c-CceEEeeCCccCc
Q psy14499 69 VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I-PCDILIPAAIEDQ 146 (262)
Q Consensus 69 VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~-~~DIlipaa~~~~ 146 (262)
+|+++|+.|.+.|++|+ |.| .++++..++.+..+. + .+.+..+++.++.+ . .+|+++-|=+.+.
T Consensus 1 MG~~mA~nL~~~G~~V~-v~n----------rt~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYN----------RTPEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EEC----------CCHHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 58899999999999987 878 577777777653221 0 02233333455543 2 5898887754433
Q ss_pred ccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc------------cchhhHHHHHHHHhh---
Q psy14499 147 ITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT------------NAGGVIVSYFEWVQN--- 204 (262)
Q Consensus 147 it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a------------N~GGvi~s~~E~~~~--- 204 (262)
...+. .+.+ ..++|+++.|... |.+..+.++++|+.++--.+. -.||--. .++.++.
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~-a~~~~~piL~ 145 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKE-AYELVAPILE 145 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHH-HHHHHHHHHH
Confidence 32222 2333 4679999999754 555668889999999833332 1233211 1222221
Q ss_pred -hc-CC-------CC-C-------HHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHH
Q psy14499 205 -LS-NL-------LW-T-------EQEINLRLNNIICNAFDAIWELAN-TKKVSLRTAAFII 248 (262)
Q Consensus 205 -~~-~~-------~~-~-------~~~v~~~l~~~~~~~~~~v~~~a~-~~~~~~r~aa~~~ 248 (262)
.. .. .| . -.-|...++..+-..+.+.+..++ +.|+++.+.+.++
T Consensus 146 ~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 146 KIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 10 00 11 0 123455677777777888888888 4788877766554
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.35 Score=45.67 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=28.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-----CCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-----g~~vv~V~D~ 90 (262)
-.||+|.|||.+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 3 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred ceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 36999999999999999998764 5899999883
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.24 Score=45.40 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
.+.|..||.. ++++.|.+++|++++|+|=++ ||+-++.+|.+. +++|+ +|.+
T Consensus 133 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs 189 (287)
T PRK14181 133 IPCTPAGIIE----LLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHS 189 (287)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCC
Confidence 5788888754 566779999999999999754 899999999998 78877 7764
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.48 Score=43.64 Aligned_cols=106 Identities=12% Similarity=0.199 Sum_probs=59.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc--------eecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG--------EKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~--------~~~~~~~~i 130 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|+ +. ......+..-.+.+.++. -...+..+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~-~~~r----------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVT-LIGR----------AR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA 70 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEE-EEec----------HH-HHHHHHhcCceeecCCCcceecccceeEeccChhh
Confidence 579999999999999999999999887 4452 11 111222211111111110 001101122
Q ss_pred cccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCCCH-HHHHHHHH
Q psy14499 131 WSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT-EADDILRD 178 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t~-ea~~~l~~ 178 (262)
. .++|+++.|.....+ .+....+ .-.+|+...|+.-+. ...+.+.+
T Consensus 71 ~-~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~ 122 (341)
T PRK08229 71 L-ATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPG 122 (341)
T ss_pred c-cCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCC
Confidence 2 489999998765433 3333333 235788888877653 34455543
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.25 Score=45.67 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
++++|+|+|.|+||+.+|-.|...+. .++ +.|
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D 38 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IID 38 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 56799999999999999999988886 444 777
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.84 Score=42.86 Aligned_cols=107 Identities=14% Similarity=0.128 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|. ..|+.-++.+.+. +++++||+| .|.++..+..++.+ +. .+++.++++. .
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d----------~~~erA~~~A~~~g-i~------~y~~~eell~d~ 63 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILA----------QGSERSRALAHRLG-VP------LYCEVEELPDDI 63 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEc----------CCHHHHHHHHHHhC-CC------ccCCHHHHhcCC
Confidence 3579999999 5698888888774 699999999 68888877777654 11 2233456653 4
Q ss_pred CceEEe-eCCccCcccccchhcc---CceEEEecCCCCCC-HHHHHHH---HHCCCeEe
Q psy14499 134 PCDILI-PAAIEDQITINNANNV---TAKIILEGANGPTT-TEADDIL---RDKGIILA 184 (262)
Q Consensus 134 ~~DIli-paa~~~~it~e~a~~~---~~kiIve~AN~p~t-~ea~~~l---~~rgi~~i 184 (262)
++|++. |.+..+..+.+.+... ...+++|= |++ .|+++++ +++|+.+.
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EK---Pla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEH---PLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcC---CCCHHHHHHHHHHHHHcCCEEE
Confidence 555554 3334455666665554 34577775 443 4555443 66788775
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.2 Score=40.95 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=28.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
.+.+|+|.|.|.||..++++++..|++ |+ ++|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~ 201 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CAD 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEe
Confidence 688999999999999999999999995 55 555
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.39 Score=43.97 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH-HHHHHHHhcCCccCCCCceec--CCCcccc-c
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP-KLQKYVTFTRSIKDFNEGEKI--NDSKEFW-S 132 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~-~l~~~~~~~g~~~~~~~~~~~--~~~~~il-~ 132 (262)
..+|+|.|+ |++|+.+++.+.+.+..+|+..|... +|-|.. .+.. . +.... ++.++++ +
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~-----~~~~~~~~~~g----------~-~v~~~~~~dl~~~l~~ 74 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGP-----AGVGVTVEVCG----------V-EVRLVGPSEREAVLSS 74 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEecccc-----ccccccceecc----------c-eeeeecCccHHHHHHH
Confidence 469999997 99999999999889999999888533 333322 1111 0 11111 2233444 3
Q ss_pred c---Cce-EEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHHC---CCeEeccccc
Q psy14499 133 I---PCD-ILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRDK---GIILAPDVIT 189 (262)
Q Consensus 133 ~---~~D-Ilipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~r---gi~~iPD~~a 189 (262)
. .+| |+|+-+.+..... +.+...+.++|++-.. ++++-.+.+.+. ++++.|.|..
T Consensus 75 ~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG--~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 75 VKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTG--GDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred hhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCC--CCHHHHHHHHhcCCccEEEECcccH
Confidence 3 688 9999997665533 2334446667776554 455533334333 6777777755
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.15 Score=46.66 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+..+|+|+|.|.+|..+|+.|...|.+-+.+.|.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~ 51 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDT 51 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 57889999999999999999999999988878885
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.19 Score=42.85 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|-||.-+|-.|.+.|++|+ ..|
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~-g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVI-GVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEE-EE-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEE-EEe
Confidence 589999999999999999999999999 456
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.16 Score=45.39 Aligned_cols=105 Identities=16% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
..++|.|+|+|++|+++++-|.+.+. ++. ++|. +.+++ +.....++.++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~----------~~~~~--------------~~~~~~~~~~~~- 55 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTP----------SKKNT--------------PFVYLQSNEELA- 55 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECC----------ChhcC--------------CeEEeCChHHHH-
Confidence 45799999999999999999998762 243 4442 11110 011122133444
Q ss_pred cCceEEeeCCccCccc---ccchhccCceEEEecCCCCCCHHHHHHHHH--CCCeEeccc
Q psy14499 133 IPCDILIPAAIEDQIT---INNANNVTAKIILEGANGPTTTEADDILRD--KGIILAPDV 187 (262)
Q Consensus 133 ~~~DIlipaa~~~~it---~e~a~~~~~kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~ 187 (262)
.+||++|-|..+..+. .+..+.++.+.|+.-+++-.....++.+.. +-+.++|..
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~ 115 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNT 115 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCc
Confidence 4789999887654432 122222334566666666554444454422 224455543
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.24 Score=46.32 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=55.9
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
++|+|+|. |.+|+.+++.|.+. +.+++++++.. +.|-.+.+ ....+....... +++.++....++|
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-----~~g~~l~~------~~~~~~~~~~~~-~~~~~~~~~~~vD 70 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-----SAGKPLSD------VHPHLRGLVDLV-LEPLDPEILAGAD 70 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-----ccCcchHH------hCcccccccCce-eecCCHHHhcCCC
Confidence 69999997 99999999999886 78999888731 11111111 011111110111 1112222235799
Q ss_pred EEeeCCccCcccccchhcc--CceEEEecCCCC
Q psy14499 137 ILIPAAIEDQITINNANNV--TAKIILEGANGP 167 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~--~~kiIve~AN~p 167 (262)
+++-|++.+ .+.+.+..+ ..+.|++.++..
T Consensus 71 ~Vf~alP~~-~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 71 VVFLALPHG-VSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEEECCCcH-HHHHHHHHHHhCCCEEEECCccc
Confidence 999988653 555665555 245777777554
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.55 Score=45.65 Aligned_cols=34 Identities=32% Similarity=0.628 Sum_probs=31.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|.|+|.-|+++++.|.+.|++|+ ++|.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~ 38 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDD 38 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcC
Confidence 458999999999999999999999999988 8873
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.4 Score=49.26 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEe
Confidence 579999999999999999999999988 878
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.34 Score=44.43 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=26.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
++|+|+|.|.||+.++..|...|. .++ +.|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence 379999999999999999999884 555 7773
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.39 Score=39.11 Aligned_cols=30 Identities=47% Similarity=0.653 Sum_probs=25.3
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCC--CEEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAG--AKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g--~~vv~V~D 89 (262)
++|+|+|. |+||++++-.|...+ -.++ +.|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D 33 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LID 33 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-Eec
Confidence 48999999 999999999998876 4555 777
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.5 Score=45.28 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEcC-----------------CHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 54 LNIINSKISIQGF-----------------GNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 54 ~~l~~~~v~IqGf-----------------G~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.++++++|+|.|- |.+|.++|+.|.+.|++|+. .+..
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~-v~~~ 237 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL-VSGP 237 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE-eCCC
Confidence 5789999999987 88999999999999999984 4443
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.16 Score=47.19 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
+.++|+|+|.|+||..++..+...|. . +.+.|.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi 38 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDI 38 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeC
Confidence 45799999999999999999988885 6 448783
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.37 Score=44.41 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=42.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHC----CCEEEEEeCC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKA----GAKIVAIQDD 90 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~----g~~vv~V~D~ 90 (262)
.+.|..||. +++++.|.+++|++|+|+|= ..||+-++.+|.++ +++|. +|.+
T Consensus 141 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs 197 (297)
T PRK14168 141 LPCTPAGIQ----EMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHT 197 (297)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecC
Confidence 578888775 45567799999999999997 45899999999988 68877 7764
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.2 Score=48.66 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++|+|.|+|.-|.+++++|.+.|++|+ ++|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~ 39 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLF 39 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcC
Confidence 568899999999999999999999999988 8884
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.07 Score=51.82 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEE
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIV 85 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv 85 (262)
.|++++|+|+|+|+.|++.|..|...|.+|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3799999999999999998888888898877
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.78 Score=41.38 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|++|..++..|.+.|..|+ +.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~-~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVT-FLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceE-EEe
Confidence 479999999999999999999998877 444
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.58 Score=43.30 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=67.8
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
...||.-.++++ .+.|..=.|.+|+|.+. |.||+-+.++-.-+|++||+++-+ .++..-+++..
T Consensus 131 LGmpG~TAY~gL----l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg-----------~eK~~~l~~~l 195 (340)
T COG2130 131 LGMPGLTAYFGL----LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG-----------AEKCDFLTEEL 195 (340)
T ss_pred cCCchHHHHHHH----HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC-----------HHHHHHHHHhc
Confidence 344444444444 34566557999999996 999999999888899999999974 23332222222
Q ss_pred C--CccCCCCceecCCCcccc----ccCceEEeeCCccCcccccchhc--cCceEEEecC
Q psy14499 113 R--SIKDFNEGEKINDSKEFW----SIPCDILIPAAIEDQITINNANN--VTAKIILEGA 164 (262)
Q Consensus 113 g--~~~~~~~~~~~~~~~~il----~~~~DIlipaa~~~~it~e~a~~--~~~kiIve~A 164 (262)
| ..-+|... + ..+.| --..||++++-.+++.+. -.+. .++|+++-|+
T Consensus 196 GfD~~idyk~~---d-~~~~L~~a~P~GIDvyfeNVGg~v~DA-v~~~ln~~aRi~~CG~ 250 (340)
T COG2130 196 GFDAGIDYKAE---D-FAQALKEACPKGIDVYFENVGGEVLDA-VLPLLNLFARIPVCGA 250 (340)
T ss_pred CCceeeecCcc---c-HHHHHHHHCCCCeEEEEEcCCchHHHH-HHHhhccccceeeeee
Confidence 2 11122111 1 22222 246799999988777653 2223 3688877765
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.36 Score=43.78 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=38.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.+++++++|.|. +.+|+.+|+.|.+.|+.++-|+- +.++|.++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR-----------~~~kL~~la~~ 49 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVAR-----------REDKLEALAKE 49 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeC-----------cHHHHHHHHHH
Confidence 357889999996 89999999999999999997776 56777776553
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.1 Score=42.80 Aligned_cols=113 Identities=22% Similarity=0.369 Sum_probs=65.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEe-C-------CCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQ-D-------DKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~-D-------~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
.+++|+|+|-||.-+|-.+.+.|++|+|+= | .+|..|=.+ .+.+++++...+.|.+. + -+++ +-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr----a--Ttd~-~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR----A--TTDP-EE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce----E--ecCh-hh
Confidence 899999999999999999999999999762 1 133333211 33444333333333332 1 1112 23
Q ss_pred cccCceEEeeCCccCccc-cc--------chhcc------CceEEEecCCCCC-CHHHH-HHHHHCC
Q psy14499 131 WSIPCDILIPAAIEDQIT-IN--------NANNV------TAKIILEGANGPT-TTEAD-DILRDKG 180 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it-~e--------~a~~~------~~kiIve~AN~p~-t~ea~-~~l~~rg 180 (262)
++ +||+++=|=++-.-. .+ .++++ ..-+|.|+.=-|= |.+.. .+|+++.
T Consensus 82 l~-~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 82 LK-ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred cc-cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcC
Confidence 33 999998775542222 11 12222 3458889888874 55554 4555534
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.13 Score=47.39 Aligned_cols=54 Identities=20% Similarity=0.422 Sum_probs=42.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCcee-eC---CCCCCHHHHHHHHH
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI-YN---PNGFNIPKLQKYVT 110 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i-~~---~~GlD~~~l~~~~~ 110 (262)
|++++|+|+|+|+=|.+-+..|++.|..|+ |-=+.|.. |+ .+|+++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 699999999999999999999999999976 66555544 43 47777666555543
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.28 Score=45.30 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=28.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|+|.|.+|..+|+.|...|..-+.+.|.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 5899999999999999999999877778884
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.78 Score=43.85 Aligned_cols=104 Identities=8% Similarity=0.034 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcccc-c--
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKEFW-S-- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~il-~-- 132 (262)
....++|.|+|.+|+.+++.|.+.|..++ |.|. | +..+..++.-. +.+ +. + .++.+ +
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vv-VId~----------d--~~~~~~~~g~~vI~G--D~---t-d~e~L~~Ag 299 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVT-VIVP----------L--GLEHRLPDDADLIPG--DS---S-DSAVLKKAG 299 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEE-EEEC----------c--hhhhhccCCCcEEEe--CC---C-CHHHHHhcC
Confidence 35679999999999999999999998887 4442 1 11111111100 100 11 1 12222 1
Q ss_pred -cCceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 133 -IPCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
.+|+.++-++..+..|- ..++++ ++|+|+...| ++..+.|++.|+..
T Consensus 300 I~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~GaD~ 352 (393)
T PRK10537 300 AARARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHPDM 352 (393)
T ss_pred cccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCCCE
Confidence 37888888776544333 344555 4677776554 56677788877543
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.67 Score=44.21 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=36.1
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHC--CCEEEEEe-CCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKA--GAKIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~--g~~vv~V~-D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
++|+|.| .|++|+...+.+.+. .++|++++ + -+++.+.+..++.+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~----------~n~~~l~~q~~~f~ 50 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAG----------KNVELLAEQAREFR 50 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcC----------CCHHHHHHHHHHhC
Confidence 6899999 899999999998764 78999998 5 56777766665543
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.4 Score=43.40 Aligned_cols=30 Identities=30% Similarity=0.501 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|...|..|+ +.|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d 33 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVD 33 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEe
Confidence 589999999999999999999999987 667
|
|
| >KOG2336|consensus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.23 Score=45.41 Aligned_cols=43 Identities=28% Similarity=0.519 Sum_probs=35.8
Q ss_pred HHHHHHhCC-----CCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 46 SKIASKINL-----NIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 46 ~~~~~~~g~-----~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.-+++++|+ .++...|+|+|.|.||+-.|++|.+.|+ |++ ..|
T Consensus 65 LMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfD 113 (422)
T KOG2336|consen 65 LMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFD 113 (422)
T ss_pred HHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eee
Confidence 456788886 3789999999999999999999999995 554 555
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.53 Score=48.39 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=27.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d 343 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKD 343 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEe
Confidence 479999999999999999999999988 878
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.43 Score=44.18 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-++|+|+|.|.+|+++|..+...|+.|+ +.|.
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~ 34 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDI 34 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceE-EEeC
Confidence 34789999999999999999988779988 8884
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.49 Score=48.83 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+...|+.|+ +.|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d 365 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKD 365 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-Eec
Confidence 579999999999999999999999988 778
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.97 Score=41.56 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=25.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++|+|+|.|.||..+|..|...|. .-+.+.|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D 32 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVD 32 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence 479999999999999999999984 3344777
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.91 Score=42.76 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.++|+|.|.+. +|..+++.|.+.|++|+ ++|+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi-~~d~ 36 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVI-LADS 36 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 468999999986 89999999999999999 5553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.35 Score=44.26 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++|.|+|.|++|+.+|+.|.+.|..|. +.|+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r 35 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSR 35 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeC
Confidence 46789999999999999999999999987 6664
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.72 Score=47.31 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=26.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+. ..|+.|+ +.|
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d 335 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKD 335 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEe
Confidence 47999999999999999887 5899987 777
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.63 Score=36.35 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=26.6
Q ss_pred eEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCC
Q psy14499 60 KISIQGF-GNVGSVAANLFFK-AGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~ 90 (262)
|++|+|. |.+|..+++.|.+ .++.+++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEec
Confidence 5889995 9999999999988 58999999663
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.76 Score=40.63 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~ 39 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLS 39 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEe
Confidence 4688999999997 6799999999999999987 556
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.36 Score=46.66 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+++|.|.|+|.-|.++|++|.+.|++|. ++|.
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~ 45 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDK 45 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECC
Confidence 457899999999999999999999999977 7884
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.54 Score=42.71 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=31.1
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
..++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34678999999997 8899999999999999998543
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.6 Score=42.74 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D 89 (262)
++|+|+|.|.||..+|-.|.+. |.+|+++ |
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-D 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-E
Confidence 5799999999999999999988 4788855 6
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.87 Score=39.68 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~ 41 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LAD 41 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEc
Confidence 4678999999996 8999999999999999988 555
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.83 E-value=3.9 Score=36.67 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|.|.|.||+.++++++.+|++++.++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~ 187 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR 187 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 3678999999999999999999999999875544
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.98 Score=38.84 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.|
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi-~~~ 36 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLA-LID 36 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999997 9999999999999999987 455
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.45 Score=46.30 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+++|.|.|+|..|++++++|.+.|++|+ ++|.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~ 46 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADD 46 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECC
Confidence 577899999999999999999999999766 7884
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.82 Score=41.71 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+|+|.|.|.+|+.+++.|.+.|..+. |.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~-i~g 33 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVR-IIG 33 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEE-EEe
Confidence 4689999999999999999999998874 444
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.1 Score=38.44 Aligned_cols=35 Identities=17% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~-~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVV-AAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEE-EEe
Confidence 4578899999997 8999999999999999988 445
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.1 Score=42.01 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=69.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC--ceecCCCccccccC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE--GEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~--~~~~~~~~~il~~~ 134 (262)
++|+|+|. |-||+.++++|.++ +.+++++++++.. .|-.+... ...+....+ .+..+ .+++.. +
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s----agk~~~~~------~~~l~~~~~~~~~~~~-~~~~~~-~ 68 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES----AGKPVSEV------HPHLRGLVDLNLEPID-EEEIAE-D 68 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh----cCCChHHh------CccccccCCceeecCC-HHHhhc-C
Confidence 48999998 99999999999886 7888877664311 11111111 111111000 11111 233433 8
Q ss_pred ceEEeeCCccCcccccchhcc--CceEEEecCCCC-CC-HHHHH----------HHHHCCCeEecc----------cccc
Q psy14499 135 CDILIPAAIEDQITINNANNV--TAKIILEGANGP-TT-TEADD----------ILRDKGIILAPD----------VITN 190 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p-~t-~ea~~----------~l~~rgi~~iPD----------~~aN 190 (262)
+|+++-|.+.. .+.+.+..+ ..+.|++.++.. +. ++.-+ .|.+.=+..+|. +++|
T Consensus 69 ~DvVf~alP~~-~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iian 147 (346)
T TIGR01850 69 ADVVFLALPHG-VSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIKGARLIAN 147 (346)
T ss_pred CCEEEECCCch-HHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhCCCcEEEc
Confidence 99999988644 555555554 224455555443 33 22111 122233456676 4667
Q ss_pred chhhHHHHHH
Q psy14499 191 AGGVIVSYFE 200 (262)
Q Consensus 191 ~GGvi~s~~E 200 (262)
.|.-.++..-
T Consensus 148 PgC~~t~~~l 157 (346)
T TIGR01850 148 PGCYPTATLL 157 (346)
T ss_pred CCcHHHHHHH
Confidence 7766555443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1 Score=39.17 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~ 41 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNG 41 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEe
Confidence 578999999996 9999999999999999988 555
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.47 Score=46.38 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++.+++|.|.|+|..|.++|++|.+.|++|. ++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLR-VADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCC
Confidence 3567899999999999999999999999987 78853
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.38 Score=44.54 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~ 90 (262)
.+.++|+|+|.|+||+.++..|...| .. +.+.|.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di 37 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDV 37 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEEC
Confidence 35679999999999999999998888 56 447773
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.04 E-value=1.1 Score=41.80 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc-------eecCCCccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG-------EKINDSKEF 130 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~-------~~~~~~~~i 130 (262)
.++|+|+|.|+.|..++..|.+.|. ++ +.. .|.+.+.+..+.+.....+++. ...++..+.
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g~-v~-l~~----------~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRGP-TL-QWV----------RSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-EE-EEe----------CCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHH
Confidence 3689999999999999999999984 44 222 2444444444432222222211 111112222
Q ss_pred cccCceEEeeCCccCccc---ccchhccCc-eEEEecCCCC
Q psy14499 131 WSIPCDILIPAAIEDQIT---INNANNVTA-KIILEGANGP 167 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it---~e~a~~~~~-kiIve~AN~p 167 (262)
+ .++|+++-|.++..+. .+..+.++. .+|+-.+|+-
T Consensus 75 ~-~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 A-NCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 2 4889999988765432 122222332 3577777753
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.59 Score=43.74 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNP 97 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~ 97 (262)
+++..+|+|+|.|.+|..+|..|.+.|++|+ |.|..-...++
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 4667899999999999999999999999988 88864333333
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=2.6 Score=39.51 Aligned_cols=108 Identities=12% Similarity=0.054 Sum_probs=66.8
Q ss_pred ecccCCCCccC-CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC---CHHHHHHHHHHHHC-CCEEEEEeCCCceee
Q psy14499 21 TGKPISIGGSF-GRQKATGRGVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFKA-GAKIVAIQDDKTTIY 95 (262)
Q Consensus 21 tGkp~~~GG~~-~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf---G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~ 95 (262)
...|+-.+|+. +.-+-=+..=++.+++.+...|.+++|++|+++|= ++|...++..|..+ |..++ ++-
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~-~~~------ 193 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFT-LVS------ 193 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEE-EEC------
Confidence 56899888885 44444455555555554322355789999999998 58999999887754 88877 443
Q ss_pred CCCCCC-HHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCC
Q psy14499 96 NPNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA 142 (262)
Q Consensus 96 ~~~GlD-~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa 142 (262)
|.|+. ++.+.+..++.|. ..+..+++++.+ .++||+..-.
T Consensus 194 -P~~~~~~~~~~~~~~~~g~-----~~~~~~d~~ea~-~~aDvvyt~~ 234 (338)
T PRK08192 194 -PKELAMPDYVISDIENAGH-----KITITDQLEGNL-DKADILYLTR 234 (338)
T ss_pred -CccccCCHHHHHHHHHcCC-----eEEEEcCHHHHH-ccCCEEEEcC
Confidence 44543 2344443333221 122233344555 4999999854
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.62 Score=44.74 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.++++.|.|.|..|.++|++|.+.|++|+ ++|.
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~ 36 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDA 36 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 3578899999999999999999999999987 6774
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.85 Score=42.30 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|.|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDL 31 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcC
Confidence 5899999999999999999999887778884
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.42 Score=48.39 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=49.8
Q ss_pred CceEecccCCCCccCCCCChhHHHHHHHHHHH----HHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 17 PGIVTGKPISIGGSFGRQKATGRGVFIIGSKI----ASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 17 ~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~----~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|....+-+.++-+-++..-.-..|=.-++-+ +..++. .|+..+|+|+|.|.+|..+|+.|...|.+-+.++|.
T Consensus 292 ~GKl~pr~~dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 292 NGKLQPISVDLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred CCCcCceEechhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 34444445555555555544444444443322 112233 478999999999999999999999999887879985
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.2 Score=38.84 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~-~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLH-LVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 4578899999997 7899999999999999988 444
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=89.83 E-value=2.3 Score=38.71 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=28.1
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
+.+|+|.|. |.||..+++++..+|+ +|++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~ 188 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG 188 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC
Confidence 489999998 9999999999999999 7886654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=89.77 E-value=1.1 Score=46.07 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..+. ..|+.|+ +.|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~-l~d 340 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVR-IKD 340 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEE-EEe
Confidence 67999999999999999988 7899988 777
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=4.7 Score=36.88 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|+|.|.+|..++++++..|+++|.++|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~ 192 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 3688999999999999999999999998543555
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.3 Score=38.62 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAA 40 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEc
Confidence 578999999997 8899999999999999988 555
|
|
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.6 Score=40.85 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred ecccCCCCccC-CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC---CHHHHHHHHHHHHC-CCEEEEEeCCCceee
Q psy14499 21 TGKPISIGGSF-GRQKATGRGVFIIGSKIASKINLNIINSKISIQGF---GNVGSVAANLFFKA-GAKIVAIQDDKTTIY 95 (262)
Q Consensus 21 tGkp~~~GG~~-~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf---G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~ 95 (262)
...|+-.+|.. ..-+-=+..=++.+++....+|.+++|++|+++|- ++|...++..+..+ |+.++ ++-
T Consensus 203 s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l~~------ 275 (429)
T PRK11891 203 TNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-LVS------ 275 (429)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-EEC------
Confidence 56899888863 44444444444454443211233589999999998 59999999998876 99987 444
Q ss_pred CCCCCCH-HHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 96 NPNGFNI-PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 96 ~~~GlD~-~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|.|+++ +.+.+..++.|. ..+..+++++.+ .++||+.....
T Consensus 276 -P~~~~~~~~~~~~~~~~G~-----~v~~~~d~~eav-~~ADVVYt~~~ 317 (429)
T PRK11891 276 -PPTLEMPAYIVEQISRNGH-----VIEQTDDLAAGL-RGADVVYATRI 317 (429)
T ss_pred -CCccccCHHHHHHHHhcCC-----eEEEEcCHHHHh-CCCCEEEEcCc
Confidence 455533 344444333221 112233345555 49999998553
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.58 Score=44.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..+|.|+|+|..|.++|+.|.+.|++|+ ++|.
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~ 34 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDK 34 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeC
Confidence 45789999999999999999999999877 6774
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=89.39 E-value=3.3 Score=38.12 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=65.6
Q ss_pred ecccCCCCccCC-CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeCCCceeeC
Q psy14499 21 TGKPISIGGSFG-RQKATGRGVFIIGSKIASKINLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDDKTTIYN 96 (262)
Q Consensus 21 tGkp~~~GG~~~-~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D~~G~i~~ 96 (262)
.+.|+-.+|... .-+-=+..=++.+++ +.| +++|++|+++|-+ +|.+.++..+..+|+.+. ++-
T Consensus 116 s~vPVINa~~g~~~HPtQ~LaDl~Ti~e---~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~-~~~------- 183 (301)
T TIGR00670 116 SEVPVINAGDGSNQHPTQTLLDLYTIYE---EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVY-LIS------- 183 (301)
T ss_pred CCCCEEeCCCCCCCCcHHHHHHHHHHHH---HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEE-EEC-------
Confidence 568988888743 333334433444443 345 6899999999985 999999999999999987 544
Q ss_pred CCCCC-HHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 97 PNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 97 ~~GlD-~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|.|++ ++.+.+..++.|. ..+..+|+++.+ .++||+..-..
T Consensus 184 P~~~~~~~~~~~~~~~~G~-----~v~~~~d~~~a~-~~aDvvyt~~~ 225 (301)
T TIGR00670 184 PEELRMPKEILEELKAKGI-----KVRETESLEEVI-DEADVLYVTRI 225 (301)
T ss_pred CccccCCHHHHHHHHHcCC-----EEEEECCHHHHh-CCCCEEEECCc
Confidence 45552 3344443333220 112223344555 48999988543
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.62 Score=44.91 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++|.|+|+|..|..+|++|.+.|++|. ++|.
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~ 40 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDD 40 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECC
Confidence 578899999999999999999999999876 7884
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.3 Score=39.80 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVD 40 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 8899999999999999987 555
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=89.16 E-value=1.3 Score=38.14 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|.|+.|.+.|.|. +|+.+++.|+..|++|++++.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR 39 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVAR 39 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEec
Confidence 468999999999876 999999999999999999986
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.1 Score=36.10 Aligned_cols=97 Identities=22% Similarity=0.262 Sum_probs=53.6
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC-----CccccccCc
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND-----SKEFWSIPC 135 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~-----~~~il~~~~ 135 (262)
|+|.|.|.+|..+|-.|++.|..|.-++. ...+....++.-.+....+...... .......++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSR------------SPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEES------------HHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEc------------cccHHhhhheeEEEEecccceecccccccCcchhccCCC
Confidence 68999999999999999999999885544 2223333333222322211111110 111234689
Q ss_pred eEEeeCCccCcccccchhcc-----CceEEEecCCCCCCH
Q psy14499 136 DILIPAAIEDQITINNANNV-----TAKIILEGANGPTTT 170 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t~ 170 (262)
|+++-|.-.... .+..+.+ +...|+-.-|+--..
T Consensus 69 D~viv~vKa~~~-~~~l~~l~~~~~~~t~iv~~qNG~g~~ 107 (151)
T PF02558_consen 69 DLVIVAVKAYQL-EQALQSLKPYLDPNTTIVSLQNGMGNE 107 (151)
T ss_dssp SEEEE-SSGGGH-HHHHHHHCTGEETTEEEEEESSSSSHH
T ss_pred cEEEEEecccch-HHHHHHHhhccCCCcEEEEEeCCCCcH
Confidence 999999754333 2222222 223677777775443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=1.4 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~ 37 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGD 37 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 468899999984 8899999999999999987 666
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=2 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=27.6
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 468999996 89999999999999999986543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.04 E-value=1.4 Score=37.81 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.| .|.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 36788999999 599999999999999999885543
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.03 E-value=1.5 Score=41.54 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
...||.|+|+ |-+|+.+++.|.+. +.+|+ ..|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcC
Confidence 5689999999 99999999999874 78877 4554
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.7 Score=37.69 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 578999999996 999999999999999998844
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.9 Score=41.92 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
|.++.+++|+|.| .|-+|+++++.|.+.|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5678999999999 499999999999999999996544
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.2 Score=41.62 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=60.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee------cCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK------INDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~------~~~~~~il~ 132 (262)
++|+|+|.|+=|.++|..|.+.|..|. +.. .|++.+.+..+.+.....+|+... .+|..+.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~-lw~----------r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~- 69 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVR-LWG----------RDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL- 69 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeE-EEe----------cCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHH-
Confidence 589999999999999999999998877 544 577777777665444444553321 11122233
Q ss_pred cCceEEeeCCccCcccccchhcc-----CceEEEecCCC
Q psy14499 133 IPCDILIPAAIEDQITINNANNV-----TAKIILEGANG 166 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~ 166 (262)
.++|+++-+-+...+ .+.++++ +-..|+-.+.+
T Consensus 70 ~~ad~iv~avPs~~~-r~v~~~l~~~l~~~~~iv~~sKG 107 (329)
T COG0240 70 DGADIIVIAVPSQAL-REVLRQLKPLLLKDAIIVSATKG 107 (329)
T ss_pred hcCCEEEEECChHHH-HHHHHHHhhhccCCCeEEEEecc
Confidence 359999987765443 2333332 33456666665
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.85 E-value=4.6 Score=38.75 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=101.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C----C-Cce-ecC-C
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F----N-EGE-KIN-D 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~----~-~~~-~~~-~ 126 (262)
++|+|+|.|=||...+-.|.+.|+.|+ ..| +|..++..+....-.+-+ + . .++ ..+ |
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv-~vD----------id~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVV-CVD----------IDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEE-EEe----------CCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcC
Confidence 589999999999999999999999998 557 566655444332111110 0 0 000 011 1
Q ss_pred CccccccCceEEeeCCccCcc-ccc--------chhc----c-CceEEEecCCCCC--CHHHHHHHHHCC------CeEe
Q psy14499 127 SKEFWSIPCDILIPAAIEDQI-TIN--------NANN----V-TAKIILEGANGPT--TTEADDILRDKG------IILA 184 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~i-t~e--------~a~~----~-~~kiIve~AN~p~--t~ea~~~l~~rg------i~~i 184 (262)
..+.+ .++||.+-|.++..- ++. .++. + +.++||.=.=.|+ +.+..+.+.+.. |..-
T Consensus 70 ~~~a~-~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N 148 (414)
T COG1004 70 YEEAV-KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148 (414)
T ss_pred HHHHH-hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence 11222 488998888765433 221 1222 2 3478887777776 566666666655 6666
Q ss_pred ccccccchhh------------------HHHHHHHHhhh--cCC-----CCCHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy14499 185 PDVITNAGGV------------------IVSYFEWVQNL--SNL-----LWTEQEI-----NLRLNNIICNAFDAIWELA 234 (262)
Q Consensus 185 PD~~aN~GGv------------------i~s~~E~~~~~--~~~-----~~~~~~v-----~~~l~~~~~~~~~~v~~~a 234 (262)
|.||--.-.| ..-..|+.+.. ++. .+...|. ..-|..++ .-++++-+.|
T Consensus 149 PEFLREG~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKI-sFiNEia~ic 227 (414)
T COG1004 149 PEFLREGSAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKI-SFINEIANIC 227 (414)
T ss_pred hHHhcCcchhhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 7776432221 00111111110 110 1112221 12344443 3356777788
Q ss_pred hhcCCCHHHHHHHHHHH-HHHHHHH
Q psy14499 235 NTKKVSLRTAAFIIGCT-RVLQAHK 258 (262)
Q Consensus 235 ~~~~~~~r~aa~~~a~~-rv~~a~~ 258 (262)
++.|.+.++.+.-++++ ||...+.
T Consensus 228 e~~g~D~~~V~~gIGlD~RIG~~fl 252 (414)
T COG1004 228 EKVGADVKQVAEGIGLDPRIGNHFL 252 (414)
T ss_pred HHhCCCHHHHHHHcCCCchhhHhhC
Confidence 88888888888777653 5555443
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.81 Score=39.82 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+.++++++++|.|. |.+|+.+++.|.+.|++++.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 46789999999995 889999999999999998744
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.75 E-value=1.6 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+ +++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~ 36 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGD 36 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEE
Confidence 467889999997 8899999999999999987 555
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.73 E-value=1.6 Score=38.26 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~ 39 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICG 39 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 4688999999997 7799999999999999988 445
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.70 E-value=0.88 Score=39.29 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999997 8899999999999999998553
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.62 Score=42.70 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+...++|+|+|.|.+|..+|..|.+.|..|+-+.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 3456799999999999999999999999888444
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=88.60 E-value=2.9 Score=38.85 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.+.+|+|.|.|.+|..++++++.+|+ +|+ ++|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi-~~~ 223 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVV-AVD 223 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEE-EEc
Confidence 57899999999999999999999999 466 445
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.5 Score=37.95 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 467899999997 999999999999999998844
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=88.57 E-value=0.65 Score=45.79 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=33.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC----Cceee
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD----KTTIY 95 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~----~G~i~ 95 (262)
..+.++|+|+|.|--|.++|+.|+++|++|+ |-+. .|-||
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEeccCCcCceeE
Confidence 4577899999999999999999999999987 7643 45555
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.55 E-value=3 Score=38.59 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+...+....+.+|+|.|.|.+|..++++++..|++++.+++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 33444444788999999999999999999999999886654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=88.52 E-value=1.5 Score=37.61 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|+.|+ +.+
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~-~~~ 37 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVG-LHG 37 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEc
Confidence 567889999995 9999999999999999776 444
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.52 E-value=3 Score=35.57 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 467899999996 899999999999999998743
|
|
| >KOG1196|consensus | Back alignment and domain information |
|---|
Probab=88.47 E-value=2.8 Score=38.82 Aligned_cols=118 Identities=17% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHH
Q psy14499 27 IGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKL 105 (262)
Q Consensus 27 ~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l 105 (262)
.=|..|-++.|+|--+ . ++...-+|.+|.|.|. |.||+-+-++-+-.|++|||++-|+ ++.
T Consensus 130 ylg~lGm~glTAy~Gf---~----ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~-----------EKv 191 (343)
T KOG1196|consen 130 YLGLLGMPGLTAYAGF---Y----EICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK-----------EKV 191 (343)
T ss_pred hhhccCCchhHHHHHH---H----HhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh-----------hhh
Confidence 3344455556665433 3 3334447899999996 9999999998888999999998752 222
Q ss_pred HHHHHhcCCcc--CCCCceecCCCcc----ccccCceEEeeCCccCcccccchhcc--CceEEEecCCC
Q psy14499 106 QKYVTFTRSIK--DFNEGEKINDSKE----FWSIPCDILIPAAIEDQITINNANNV--TAKIILEGANG 166 (262)
Q Consensus 106 ~~~~~~~g~~~--~~~~~~~~~~~~~----il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~ 166 (262)
.-++.+.|--. +|... ++..+ ......||+++--.+++++.- ...+ +.+|++-|+=.
T Consensus 192 ~ll~~~~G~d~afNYK~e---~~~~~aL~r~~P~GIDiYfeNVGG~~lDav-l~nM~~~gri~~CG~IS 256 (343)
T KOG1196|consen 192 DLLKTKFGFDDAFNYKEE---SDLSAALKRCFPEGIDIYFENVGGKMLDAV-LLNMNLHGRIAVCGMIS 256 (343)
T ss_pred hhhHhccCCccceeccCc---cCHHHHHHHhCCCcceEEEeccCcHHHHHH-HHhhhhccceEeeeeeh
Confidence 22222222111 11110 01122 234678999998777766542 2222 67788777644
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=1 Score=41.30 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTT 93 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~ 93 (262)
-++|++-|+|+||.+..+.|..+ +..+|++.++++.
T Consensus 2 ~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~a 38 (350)
T COG3804 2 SLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAA 38 (350)
T ss_pred CceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcc
Confidence 36899999999999888888776 9999999886543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.7 Score=37.95 Aligned_cols=33 Identities=21% Similarity=0.544 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467889999995 899999999999999998844
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.7 Score=38.20 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 37 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVD 37 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 8899999999999999988 555
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.7 Score=37.94 Aligned_cols=34 Identities=21% Similarity=0.424 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVA-LAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 7899999999999999988 555
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.33 E-value=3.1 Score=37.01 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeC
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQD 89 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D 89 (262)
+++..+. ..+.+|+|.|.|.+|..++++++.+|++ |+ ++|
T Consensus 112 al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi-~~~ 152 (280)
T TIGR03366 112 ALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAAAGAARVV-AAD 152 (280)
T ss_pred HHHhccC-CCCCEEEEECCCHHHHHHHHHHHHcCCCEEE-EEC
Confidence 3444433 3788999999999999999999999997 66 446
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.67 Score=41.47 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG 81 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g 81 (262)
+..+|+|+|.|.+|..+++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 6789999999999999999999875
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=1.7 Score=37.87 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|+|.|. |.+|.++++.|.+.|++|+ +.|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~-~~~ 38 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVV-VGD 38 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 478999999998 9999999999999999988 444
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.6 Score=40.32 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
..+|+|+|.|+||+.+|-.|...+. .++ +.|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~-LiD 35 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELV-LVD 35 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 4599999999999999999887764 344 667
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.8 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.409 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~ 36 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVA-VLD 36 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 7899999999999999988 545
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.7 Score=38.55 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~ 37 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLV-LAD 37 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEe
Confidence 457789999996 8899999999999999988 555
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=88.11 E-value=0.84 Score=42.74 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..+|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 3589999999999999999999999988 88853
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.9 Score=40.08 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-.+.+|+|.|.|.||..++++++.+|++++.+.+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3688999999999999999999999999885544
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=0.79 Score=43.21 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+...|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~-viE~~ 35 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVA-VLEQR 35 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEE-EEeCC
Confidence 34689999999999999999999999987 88853
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.03 E-value=5.7 Score=36.13 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+..+. ..+.+++|.|.|.+|+.+++++..+|++++.+.+
T Consensus 163 ~~~~~-~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~ 201 (337)
T cd05283 163 KRNGV-GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSR 201 (337)
T ss_pred HhcCC-CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcC
Confidence 33443 3678999999999999999999999999885544
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=1.9 Score=38.91 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi-~~~ 71 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVV-AVA 71 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 34568899999996 8999999999999999988 444
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.9 Score=37.39 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-IND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEc
Confidence 568899999995 8899999999999999988 555
|
|
| >TIGR03628 arch_S11P archaeal ribosomal protein S11P | Back alignment and domain information |
|---|
Probab=87.92 E-value=2.4 Score=33.55 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=51.6
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEc--------CCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 29 GSFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 29 G~~~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqG--------fG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
|--++...|.|....+.+.+.+.. ...++...|-|-| .|.-...+.+.|.+.|.+|+.|.|..
T Consensus 36 g~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvT 107 (114)
T TIGR03628 36 VKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVT 107 (114)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcC
Confidence 334678889999888888887654 3467889999999 67888889999999999999999853
|
This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.59 Score=42.63 Aligned_cols=31 Identities=42% Similarity=0.507 Sum_probs=26.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
++|+|+|.|.||..+|..+...|. .++ +.|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVV-LFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEEC
Confidence 589999999999999999988774 555 7784
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.3 Score=43.05 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=51.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|+|+..=++.|.+.|++|+-|+- + ++. ++.++.+ .+.+.-. .. .+. .+++ .
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp--------~-~~~-~~~~l~~-~~~i~~~-~~-~~~-~~dl--~ 71 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL--------A-FIP-QFTAWAD-AGMLTLV-EG-PFD-ESLL--D 71 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC--------C-CCH-HHHHHHh-CCCEEEE-eC-CCC-hHHh--C
Confidence 478999999999999999999999999999885542 1 443 3444332 2333211 01 111 1222 3
Q ss_pred CceEEeeCCccCcccccc
Q psy14499 134 PCDILIPAAIEDQITINN 151 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~ 151 (262)
++|+++-|+....+|.+.
T Consensus 72 ~~~lv~~at~d~~~n~~i 89 (457)
T PRK10637 72 TCWLAIAATDDDAVNQRV 89 (457)
T ss_pred CCEEEEECCCCHHHhHHH
Confidence 678777777655555543
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.85 E-value=0.92 Score=40.16 Aligned_cols=86 Identities=16% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhcc--Cce
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV--TAK 158 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~--~~k 158 (262)
++++++|+| .+.++..++.++.+ ...+++.++++..++|+++.|++....-+--..-+ +..
T Consensus 1 ~~eLvaV~D----------~~~e~a~~~a~~~g-------~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkh 63 (229)
T TIGR03855 1 NFEIAAVYD----------RNPKDAKELAERCG-------AKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKD 63 (229)
T ss_pred CeEEEEEEC----------CCHHHHHHHHHHhC-------CceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCC
Confidence 467899999 67888777766543 22344356777678999999998665433333333 344
Q ss_pred EEEecCCCCCCHHH----HHHHHHCCCeE
Q psy14499 159 IILEGANGPTTTEA----DDILRDKGIIL 183 (262)
Q Consensus 159 iIve~AN~p~t~ea----~~~l~~rgi~~ 183 (262)
++++..-...+.+. .+..+++|..+
T Consensus 64 Vl~~s~gAlad~e~~~~l~~aA~~~g~~l 92 (229)
T TIGR03855 64 LLIMSVGALADRELRERLREVARSSGRKV 92 (229)
T ss_pred EEEECCcccCCHHHHHHHHHHHHhcCCEE
Confidence 77754433324332 33446677555
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.83 Score=44.14 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~~g~~vv~V~D~ 90 (262)
.++++|.|+|.|..|.+ +|++|.+.|++|. ++|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECC
Confidence 36789999999999999 7999999999987 8885
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=1 Score=39.79 Aligned_cols=83 Identities=12% Similarity=0.166 Sum_probs=51.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++++++|+|+|.|.|+..=++.|.+.|++|+-|+-. ++. ++.++.+ .+.+.-. .+.++ ++++ .+
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~---------i~~-el~~l~~-~~~i~~~--~r~~~-~~dl--~g 85 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK---------FSK-EFLDLKK-YGNLKLI--KGNYD-KEFI--KD 85 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC---------CCH-HHHHHHh-CCCEEEE--eCCCC-hHHh--CC
Confidence 567999999999999999999999999999855531 333 3444332 2222111 01122 2222 46
Q ss_pred ceEEeeCCccCcccccchh
Q psy14499 135 CDILIPAAIEDQITINNAN 153 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~ 153 (262)
++++|-|+.-..+|...+.
T Consensus 86 ~~LViaATdD~~vN~~I~~ 104 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRK 104 (223)
T ss_pred CcEEEECCCCHHHHHHHHH
Confidence 7888888765555554333
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=2 Score=37.07 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi-~~~ 37 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVV-VAD 37 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 9999999999999999998 444
|
|
| >PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes | Back alignment and domain information |
|---|
Probab=87.74 E-value=3.8 Score=34.24 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=32.1
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeE-EEEcCCH---HHHHHHHHHHHCCCEEEE
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKI-SIQGFGN---VGSVAANLFFKAGAKIVA 86 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v-~IqGfG~---VG~~~a~~L~~~g~~vv~ 86 (262)
+..|++++..++..+. ..+..+| ++.|-|| -|..+|++|.+.|++|.-
T Consensus 6 E~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3467777766555442 3344555 5689977 678899999999999773
|
In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A .... |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.7 Score=38.04 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.8
Q ss_pred CCCCeEEEEcC-C-HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-G-NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G-~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. | .+|+.+++.|.+.|++|+ +.|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEe
Confidence 56899999997 6 699999999999999977 555
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.1 Score=38.61 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999997 8999999999999999988554
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.2 Score=37.07 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~-~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVL-VNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE-EEe
Confidence 3678999999996 8899999999999999988 445
|
|
| >KOG1198|consensus | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.9 Score=39.32 Aligned_cols=77 Identities=18% Similarity=0.257 Sum_probs=46.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC--CccCCCCceecCCCcccc-
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR--SIKDFNEGEKINDSKEFW- 131 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g--~~~~~~~~~~~~~~~~il- 131 (262)
+|++|+|.|- |.||+.++++....+ .++++++-. +.+ ++.++.| .+-+|.+...++ .+.
T Consensus 157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~-------e~~------~l~k~lGAd~vvdy~~~~~~e---~~kk 220 (347)
T KOG1198|consen 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSK-------EKL------ELVKKLGADEVVDYKDENVVE---LIKK 220 (347)
T ss_pred CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEccc-------chH------HHHHHcCCcEeecCCCHHHHH---HHHh
Confidence 7778888775 799999999999999 666656541 112 2222222 223343321111 121
Q ss_pred --ccCceEEeeCCccCcccc
Q psy14499 132 --SIPCDILIPAAIEDQITI 149 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~ 149 (262)
..++|++++|......+.
T Consensus 221 ~~~~~~DvVlD~vg~~~~~~ 240 (347)
T KOG1198|consen 221 YTGKGVDVVLDCVGGSTLTK 240 (347)
T ss_pred hcCCCccEEEECCCCCcccc
Confidence 347999999998755544
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.3 Score=39.11 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CC-CEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AG-AKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g-~~vv~V~D 89 (262)
.+.+|+|.|.|.||..++.++.. .| .+|+ ++|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~ 196 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLV-VFG 196 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEe
Confidence 58899999999999999998876 55 5666 555
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=87.55 E-value=1 Score=43.49 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
|...+++||+|.|. |-||+++++.|.+.|.+|+++.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 55557899999995 9999999999999999999653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.1 Score=37.48 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. +.+|+++++.|.+.|++|+.+.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~ 40 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 4688999999997 78999999999999999875444
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=87.47 E-value=0.93 Score=42.23 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++..+|+|+|.|.+|..+|..|.+.|.+|+ |.|+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~-liE~~ 39 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVA-LVAPE 39 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEE-EEeCC
Confidence 345689999999999999999999999987 88764
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.9 Score=40.89 Aligned_cols=33 Identities=36% Similarity=0.389 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+.+|+|.|.|.+|..+++++..+|++++.++|
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d 217 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGD 217 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeC
Confidence 688999999999999999999999998775666
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.3 Score=38.13 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467889999996 8999999999999999987443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=2.3 Score=36.85 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~ 37 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA 37 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 578899999996 889999999999999998844
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.1 Score=41.05 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+++++.++|.|.| .+|+++|+.|.+.|++|+ +.|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 357899999999997 799999999999999998 665
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.35 E-value=2 Score=37.32 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 368899999996 999999999999999998744
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=87.33 E-value=7.8 Score=34.83 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+.+|+|.|.|.+|+.+++++..+|++++.+++
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~ 199 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcC
Confidence 4678999999999999999999999999986655
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.5 Score=42.78 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
....|+|+|.|.+|..+|-.|.+.|.+|+ |.|..-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~-viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFR-LIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEE-EEeCCC
Confidence 35689999999999999999999999988 888643
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=87.24 E-value=1 Score=40.55 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=27.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
..|+|+|.|..|..+|..|.+.|++|+ |.|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 479999999999999999999999987 888643
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.23 E-value=6.7 Score=36.28 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=48.2
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
...|+-.+|....-+-=+..=++.++ ++.|. +++|++|+++|- ++|...++..+..+|+.+. ++-..+
T Consensus 118 ~~vPVINag~~~~HPtQaL~Dl~Ti~---e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~-~~~P~~ 187 (311)
T PRK14804 118 SQVPVINGCDNMFHPCQSLADIMTIA---LDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLT-LVTPIA 187 (311)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHH---HHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EECCCC
Confidence 45788888866544443433344444 34565 689999999997 7899999999999999987 555433
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.5 Score=37.31 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~ 37 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYA 37 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 467889999996 89999999999999999875554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.8 Score=40.68 Aligned_cols=31 Identities=29% Similarity=0.511 Sum_probs=25.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~ 90 (262)
++|+|+|.|+||+.+|-.|...+. .++ +.|.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELA-LVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeC
Confidence 699999999999999999887764 344 7673
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.9 Score=37.31 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~ 36 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAA 36 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEe
Confidence 57889999996 8899999999999999988 555
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=87.12 E-value=0.86 Score=37.85 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCCeEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC--CHH-HHH----HHHHhcCCccCCCCceecCCC
Q psy14499 57 INSKISIQGF--GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF--NIP-KLQ----KYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 57 ~~~~v~IqGf--G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~Gl--D~~-~l~----~~~~~~g~~~~~~~~~~~~~~ 127 (262)
+|++|+++|= ++|..+++..+..+|..+. ++- |.|+ +++ .++ +...+++. ..+..++.
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~-~~~-------P~~~~~~~~~~~~~~~~~~~~~~g~-----~i~~~~~~ 67 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVV-LIA-------PEGLRYPPDPEVLEKAKKNAKKNGG-----KITITDDI 67 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEE-EES-------SGGGGGSHHHHHHHHHHHHHHHHTT-----EEEEESSH
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEE-EEC-------CCcccCCCCHHHHHHHHHHHHHhCC-----CeEEEeCH
Confidence 5899999993 8999999999999999965 544 4552 332 233 22222221 11122223
Q ss_pred ccccccCceEEeeCCcc
Q psy14499 128 KEFWSIPCDILIPAAIE 144 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~ 144 (262)
++.+ .++||++.-...
T Consensus 68 ~e~l-~~aDvvy~~~~~ 83 (158)
T PF00185_consen 68 EEAL-KGADVVYTDRWQ 83 (158)
T ss_dssp HHHH-TT-SEEEEESSS
T ss_pred HHhc-CCCCEEEEcCcc
Confidence 4455 489999987766
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=87.00 E-value=4 Score=38.19 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCcc------
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKE------ 129 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~------ 129 (262)
.|.+|+|.|.|++|......++.+|++=|.++| ++..+|...++ .|. .-....... + +++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d----------~~~~Rle~Ak~-~Ga~~~~~~~~~~-~-~~~~~~~v~ 235 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITD----------LVANRLELAKK-FGATVTDPSSHKS-S-PQELAELVE 235 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEee----------cCHHHHHHHHH-hCCeEEeeccccc-c-HHHHHHHHH
Confidence 789999999999999999888999986665999 78888766655 431 111000000 0 111
Q ss_pred -ccc-cCceEEeeCCccC
Q psy14499 130 -FWS-IPCDILIPAAIED 145 (262)
Q Consensus 130 -il~-~~~DIlipaa~~~ 145 (262)
.+. ...|+-++|+...
T Consensus 236 ~~~g~~~~d~~~dCsG~~ 253 (354)
T KOG0024|consen 236 KALGKKQPDVTFDCSGAE 253 (354)
T ss_pred hhccccCCCeEEEccCch
Confidence 222 4489999999754
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=1.9 Score=38.10 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~-~~~ 34 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVV-ATA 34 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEE
Confidence 4678999985 8999999999999999987 444
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=2.3 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~ 39 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA 39 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578899999997 899999999999999998844
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.2 Score=37.02 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|.+ .+|+++++.|.+.|++|+ +.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~-~~~ 36 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLI-LCD 36 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEE-EEc
Confidence 5788999999974 599999999999999987 444
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=2.2 Score=36.93 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46899999997 889999999999999998854
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.5 Score=37.56 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+++++++.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 467899999997 7899999999999999998543
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.99 Score=44.85 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 368999999999999999999999999977 7774
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.85 E-value=1.1 Score=45.50 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~ 358 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDR 358 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 368999999999999999999999999977 7775
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.4 Score=36.85 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~-~~~ 37 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVV-IAD 37 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEE-EEc
Confidence 367889999995 8999999999999999988 445
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.74 E-value=2.1 Score=39.53 Aligned_cols=29 Identities=38% Similarity=0.587 Sum_probs=24.0
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+|+|+|.|+||+.+|..|...+. .++ +.|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elv-L~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIV-LID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 58999999999999999887764 344 777
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=86.70 E-value=1.7 Score=40.85 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=45.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHCC--------CEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCCccCCCCce------ec
Q psy14499 60 KISIQGFGNVGSVAANLFFKAG--------AKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGE------KI 124 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g--------~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~~~~~~~~~------~~ 124 (262)
+|+|+|.|+.|.++|..|.+.| .+|. +... ++ -++-+.+.+... .+.....+|+.+ ..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~-----~~-~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at 73 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVF-----EE-EIEGRNLTEIINTTHENVKYLPGIKLPANLVAV 73 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEe-----cc-ccCCHHHHHHHHhcCCCccccCCCcCCCCeEEE
Confidence 5899999999999999999888 6655 4321 11 111223333332 233333333321 11
Q ss_pred CCCccccccCceEEeeCCccCcc
Q psy14499 125 NDSKEFWSIPCDILIPAAIEDQI 147 (262)
Q Consensus 125 ~~~~~il~~~~DIlipaa~~~~i 147 (262)
+|.++++ .++|+++-|.+...+
T Consensus 74 ~dl~eal-~~ADiIIlAVPs~~i 95 (342)
T TIGR03376 74 PDLVEAA-KGADILVFVIPHQFL 95 (342)
T ss_pred CCHHHHH-hcCCEEEEECChHHH
Confidence 2122333 489999998776554
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.2 Score=36.84 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|.++++.|.+.|++|+ +.|
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi-~~~ 43 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVI-LLG 43 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEE-EEe
Confidence 368899999985 8899999999999999998 445
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.5 Score=36.53 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|.++++.|.+.|++|+.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 578899999995 889999999999999999844
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=86.62 E-value=3.3 Score=38.06 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
++|+|+|.|.||..+|..|...|. .|+ +.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vv-lvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLV-LLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEE-EEeC
Confidence 589999999999999999999775 655 7785
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.9 Score=39.25 Aligned_cols=90 Identities=16% Similarity=0.290 Sum_probs=59.9
Q ss_pred CCCCeEEEEcC----------CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 56 IINSKISIQGF----------GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 56 l~~~~v~IqGf----------G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
++|++|+|-|. -.-...+++.|.+.|++|+ + |||. ...+.+. .||+.+..+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~-a-------YDP~-----a~~~~~~------~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI-A-------YDPV-----AMENAFR------NFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE-E-------ECch-----hhHHHHh------cCCCceEeC
Confidence 89999999996 3468888999999999998 4 4443 3222222 223334444
Q ss_pred CCccccccCceEEeeCCccCccc---ccchhccCceEEEecCCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQIT---INNANNVTAKIILEGANG 166 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it---~e~a~~~~~kiIve~AN~ 166 (262)
+.++.+ ..+|+++-++.-+.+- -+.. .++.++|++|-|.
T Consensus 369 ~~~~~~-~~aDaivi~tew~ef~~~d~~~~-~m~~~~v~DgRni 410 (414)
T COG1004 369 DAEEAL-KGADAIVINTEWDEFRDLDFEKL-LMKTPVVIDGRNI 410 (414)
T ss_pred CHHHHH-hhCCEEEEeccHHHHhccChhhh-hccCCEEEecccc
Confidence 344444 5899999998743332 2223 5688899998875
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.60 E-value=2.9 Score=37.74 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.0
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+||.|.|. |-+|+++++.|.+.| .|+++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~ 29 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIAL 29 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEe
Confidence 47999996 999999999999999 67644
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.3 Score=39.34 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|.+ .+|+++|+.|.+.|++|+ +.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~ 39 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTY 39 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEe
Confidence 688999999986 699999999999999987 555
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=2.5 Score=36.39 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.4
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQG-FGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5678999999 5999999999999999998844
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.4 Score=36.77 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=29.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+++|.|.|..|+.+++.|.+.|++++++.|.+
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~ 32 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDN 32 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 47899999999999999999999999999864
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.45 E-value=1.4 Score=37.43 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=29.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 467899999986 999999999999999998744
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.43 E-value=2.6 Score=36.54 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~ 36 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG 36 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 467889999996 789999999999999998844
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.5 Score=40.15 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++|+|.|. |.+|+++++.|.+.|++|+++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578899999986 9999999999999999998654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=1.5 Score=37.92 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~ 45 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALL 45 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999995 999999999999999998844
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.73 Score=34.79 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCHHHHHHHHH-HHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANL-FFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~-L~~~g~~vv~V~D 89 (262)
+..+++|+|.|+.|+.++.. +...|.+++++.|
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~d 35 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFD 35 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEE
Confidence 45799999999999998743 3457899999998
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=86.30 E-value=5.3 Score=38.02 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
...|++=...+---+++++..+ .-++++|+|.|..++.-++.+.+. ..+-|-|.| -++++..++.++
T Consensus 132 ~~lTa~RTaA~salaa~~LAr~-da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~----------r~~~~a~~f~~~ 200 (379)
T PRK06199 132 NLLSAYRTGAVPGVGARHLARK-DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKG----------RGQKSLDSFATW 200 (379)
T ss_pred cchhhhHHHHHHHHHHHHhccC-CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEEC----------CCHHHHHHHHHH
Confidence 3344443333333344555432 567999999999999999998873 366665766 466666555443
Q ss_pred cCC-ccCCCCceecCCCccccccCceEEeeCCcc
Q psy14499 112 TRS-IKDFNEGEKINDSKEFWSIPCDILIPAAIE 144 (262)
Q Consensus 112 ~g~-~~~~~~~~~~~~~~~il~~~~DIlipaa~~ 144 (262)
-.. +.+.......++.++.. .++||++-|+..
T Consensus 201 ~~~~~~~~~~v~~~~s~~eav-~~ADIVvtaT~s 233 (379)
T PRK06199 201 VAETYPQITNVEVVDSIEEVV-RGSDIVTYCNSG 233 (379)
T ss_pred HHHhcCCCceEEEeCCHHHHH-cCCCEEEEccCC
Confidence 221 11111123334344555 589999998864
|
|
| >PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.28 E-value=7.9 Score=37.62 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++|.|.|-|-.+..+++.+.+.|+++++++
T Consensus 6 ~~vLi~~~geia~~ii~aa~~lG~~~v~~~ 35 (467)
T PRK12833 6 RKVLVANRGEIAVRIIRAARELGMRTVAAC 35 (467)
T ss_pred cEEEEECCcHHHHHHHHHHHHcCCeEEEEE
Confidence 589999999999999999999999999775
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=1 Score=43.78 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++|+|.|+|.-|.+++++|.+ |++|+ |+|.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~-v~D~ 36 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVI-VYDD 36 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEE-EECC
Confidence 57899999999999999999995 99987 8883
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=86.22 E-value=7.1 Score=36.56 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=37.5
Q ss_pred HHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 47 KIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 47 ~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|++.|.. .|+++.|.|.|.+|.-..++-..+|++|++|+.+
T Consensus 172 spLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~ 214 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTS 214 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCC
Confidence 457777877 8999999999999999999999999999977754
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.21 E-value=2.8 Score=35.96 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++++.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 467899999995 999999999999999998855
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.6 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=27.3
Q ss_pred EEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 61 ISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 61 v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|.|. |.+|+.+++.|.+.|++|++++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~ 31 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRS 31 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecC
Confidence 678996 999999999999999999998873
|
... |
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.20 E-value=1.7 Score=37.50 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. |.+|+.+++.|.+.|++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46789999996 89999999999999999885544
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.1 Score=42.10 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..|+|+|.|.+|..+|-.|.+.|++|+ |.|..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~-viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVL-LLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEE-EEcCC
Confidence 579999999999999999999999987 88863
|
|
| >CHL00041 rps11 ribosomal protein S11 | Back alignment and domain information |
|---|
Probab=86.16 E-value=3.2 Score=32.91 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=47.6
Q ss_pred CCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCce
Q psy14499 32 GRQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTT 93 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~ 93 (262)
+....|-|....+.+.+++.. ...++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|....
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpi 111 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPM 111 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 345677777776666666543 34578899999999987778889999999999999996443
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=86.13 E-value=1.2 Score=43.37 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...++|+|+|.|..|..+|+.|.+.|.+++ |.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~-vfE~ 41 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVV-VFER 41 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEE-EEec
Confidence 456899999999999999999999999988 7764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.09 E-value=1.2 Score=41.98 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
...|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVT-LLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Confidence 4679999999999999999999999988 88875
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=86.04 E-value=1.9 Score=40.26 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=27.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCC-CEEEEEeCC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAG-AKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g-~~vv~V~D~ 90 (262)
++|+|.|. |-+|+.++++|.+.. ..+++++++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence 47999995 999999999998865 799988775
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=86.03 E-value=1.6 Score=38.15 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++.++|+|.|. |.+|+.+++.|.+.|++|++++.
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 356789999995 99999999999999999987764
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=1.2 Score=41.22 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=28.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++|+|+|.|.+|..+|..|.+.|++++ |.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~-v~E~ 31 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVK-VFEK 31 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEec
Confidence 479999999999999999999999987 7764
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=2.8 Score=36.75 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi-~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVL-IAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 478899999997 6799999999999999988 445
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=85.92 E-value=1.3 Score=47.22 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=31.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 479999999999999999999999999998 7775
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.2 Score=41.90 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
..+|+|+|.|.+|..+|-.|.+.|.+|+ |.|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~-viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIA-VIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 4689999999999999999999999987 88864
|
|
| >PRK09607 rps11p 30S ribosomal protein S11P; Reviewed | Back alignment and domain information |
|---|
Probab=85.90 E-value=3.7 Score=33.38 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=51.7
Q ss_pred cCCCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEc--------CCHHHHHHHHHHHHCCCEEEEEeCCCce
Q psy14499 30 SFGRQKATGRGVFIIGSKIASKI-NLNIINSKISIQG--------FGNVGSVAANLFFKAGAKIVAIQDDKTT 93 (262)
Q Consensus 30 ~~~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqG--------fG~VG~~~a~~L~~~g~~vv~V~D~~G~ 93 (262)
--++...|-|....+.+.+.+.. ...++...|.|-| .|.-...+.+.|.+.|.+|+.|.|..-.
T Consensus 44 ~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpi 116 (132)
T PRK09607 44 KADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 116 (132)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 34677889888888888877654 4467889999999 7788888999999999999999995433
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.90 E-value=2.9 Score=36.35 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+.+++.|.+.|++|+ +.+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~-~~~ 43 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVV-LSA 43 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEE-EEe
Confidence 3578899999995 8999999999999999987 445
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.8 Score=36.71 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+.+++.|.+.|++++ +.+
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIV-FND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEe
Confidence 678899999986 7899999999999999988 555
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.81 E-value=6.2 Score=36.12 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|.|.|.+|..++++++.+|++++++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~ 195 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVM 195 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEE
Confidence 5889999999999999999999999998754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.2 Score=41.49 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+..+|+|+|.|..|..+|..|.+.|.+|+ |.|+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~-v~E~~ 35 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVT-LIERQ 35 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 45689999999999999999999999988 88864
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.7 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~ 36 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILV 36 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 478899999996 889999999999999998844
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=5.2 Score=37.41 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=45.6
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFG--NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG--~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+.|+-.+++...-+.=+..=++.+. ++.|.+++|++|+++|-+ +|..+++..+..+|+.+. ++-.
T Consensus 122 ~~vPVINa~~~~~HPtQaL~Dl~Ti~---e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~-~~~P 189 (334)
T PRK01713 122 AGVPVFNGLTDEFHPTQMLADVLTMI---ENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVR-ICAP 189 (334)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHH---HHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEE-EECC
Confidence 45788777664433333333333333 345657899999999986 689999999999999987 5544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=3.3 Score=35.58 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 357889999996 899999999999999998844
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=2.6 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vv-l~~ 38 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLV-LAA 38 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 578899999997 8899999999999999988 444
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.69 E-value=2.9 Score=35.66 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+++++++|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 56789999985 999999999999999998844
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=1.3 Score=42.60 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|.|+|+|..|..+|++|.+.|++|. ++|.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~ 31 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDR 31 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECC
Confidence 68999999999999999999999977 7884
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 262 | ||||
| 3aoe_A | 424 | Crystal Structure Of Hetero-Hexameric Glutamate Deh | 1e-75 | ||
| 3aog_A | 440 | Crystal Structure Of Glutamate Dehydrogenase (Gdhb) | 2e-75 | ||
| 1b3b_A | 415 | Thermotoga Maritima Glutamate Dehydrogenase Mutant | 1e-58 | ||
| 1b26_A | 416 | Glutamate Dehydrogenase Length = 416 | 2e-58 | ||
| 2tmg_A | 415 | Thermotoga Maritima Glutamate Dehydrogenase Mutant | 2e-57 | ||
| 3k92_A | 424 | Crystal Structure Of A E93k Mutant Of The Majour Ba | 5e-57 | ||
| 3k8z_A | 423 | Crystal Structure Of Gudb1 A Decryptified Secondary | 6e-56 | ||
| 1euz_A | 419 | Glutamate Dehydrogenase From Thermococcus Profundus | 9e-55 | ||
| 1gtm_A | 419 | Structure Of Glutamate Dehydrogenase Length = 419 | 1e-54 | ||
| 1bvu_A | 418 | Glutamate Dehydrogenase From Thermococcus Litoralis | 3e-52 | ||
| 1v9l_A | 421 | L-Glutamate Dehydrogenase From Pyrobaculum Islandic | 4e-45 | ||
| 2yfq_A | 421 | Crystal Structure Of Glutamate Dehydrogenase From P | 8e-45 | ||
| 3etd_A | 501 | Structure Of Glutamate Dehydrogenase Complexed With | 1e-37 | ||
| 1l1f_A | 505 | Structure Of Human Glutamate Dehydrogenase-Apo Form | 1e-37 | ||
| 1nr1_A | 496 | Crystal Structure Of The R463a Mutant Of Human Glut | 1e-37 | ||
| 1nqt_A | 496 | Crystal Structure Of Bovine Glutamate Dehydrogenase | 1e-37 | ||
| 3mw9_A | 501 | Bovine Glutamate Dehydrogenase Complexed With Nadh, | 1e-36 | ||
| 1hwy_A | 501 | Bovine Glutamate Dehydrogenase Complexed With Nad A | 2e-35 | ||
| 3aoe_E | 419 | Crystal Structure Of Hetero-Hexameric Glutamate Deh | 7e-33 | ||
| 3r3j_A | 456 | Kinetic And Structural Characterization Of Plasmodi | 6e-28 | ||
| 2yfh_A | 448 | Structure Of A Chimeric Glutamate Dehydrogenase Len | 2e-27 | ||
| 4fcc_A | 450 | Glutamate Dehydrogenase From E. Coli Length = 450 | 1e-26 | ||
| 3sbo_A | 447 | Structure Of E.Coli Gdh From Native Source Length = | 2e-26 | ||
| 2yfg_E | 447 | Structural Determinants Of Cofactor Specificity And | 7e-26 | ||
| 1k89_A | 449 | K89l Mutant Of Glutamate Dehydrogenase Length = 449 | 2e-22 | ||
| 1hrd_A | 449 | Glutamate Dehydrogenase Length = 449 | 2e-22 | ||
| 1aup_A | 449 | Glutamate Dehydrogenase Length = 449 | 1e-21 | ||
| 2bma_A | 470 | The Crystal Structure Of Plasmodium Falciparum Glut | 8e-21 | ||
| 1c1x_B | 355 | L-Phenylalanine Dehydrogenase Structure In Ternary | 1e-09 | ||
| 1c1d_B | 355 | L-Phenylalanine Dehydrogenase Structure In Ternary | 1e-09 | ||
| 1c1x_A | 355 | L-Phenylalanine Dehydrogenase Structure In Ternary | 1e-09 | ||
| 1bxg_B | 356 | Phenylalanine Dehydrogenase Structure In Ternary Co | 1e-09 | ||
| 1bw9_B | 356 | Phenylalanine Dehydrogenase Structure In Ternary Co | 1e-09 | ||
| 1bw9_A | 356 | Phenylalanine Dehydrogenase Structure In Ternary Co | 1e-09 | ||
| 1c1d_A | 355 | L-Phenylalanine Dehydrogenase Structure In Ternary | 1e-09 | ||
| 1bxg_A | 356 | Phenylalanine Dehydrogenase Structure In Ternary Co | 1e-09 | ||
| 3vpx_A | 364 | Crystal Structure Of Leucine Dehydrogenase From A P | 3e-04 |
| >pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 424 | Back alignment and structure |
|
| >pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From Thermus Thermophilus (Glu Bound Form) Length = 440 | Back alignment and structure |
|
| >pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d, G376k Length = 415 | Back alignment and structure |
|
| >pdb|1B26|A Chain A, Glutamate Dehydrogenase Length = 416 | Back alignment and structure |
|
| >pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r, T158e, N117r, S160e Length = 415 | Back alignment and structure |
|
| >pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus Su Glutamate Dehydrogenase Rocg Length = 424 | Back alignment and structure |
|
| >pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary Glutamate Dehydrogenase From B. Subtilis Length = 423 | Back alignment and structure |
|
| >pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The Unligated State Length = 419 | Back alignment and structure |
|
| >pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase Length = 419 | Back alignment and structure |
|
| >pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis Length = 418 | Back alignment and structure |
|
| >pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum Complexed With Nad Length = 421 | Back alignment and structure |
|
| >pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From Peptoniphilus Asaccharolyticus Length = 421 | Back alignment and structure |
|
| >pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With Bithionol Length = 501 | Back alignment and structure |
|
| >pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form Length = 505 | Back alignment and structure |
|
| >pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate Dehydrogenase Length = 496 | Back alignment and structure |
|
| >pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp Complex Length = 496 | Back alignment and structure |
|
| >pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp, Glu Length = 501 | Back alignment and structure |
|
| >pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And 2-Oxoglutarate Length = 501 | Back alignment and structure |
|
| >pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate Dehydrogenase From Thermus Thermophilus (Leu Bound Form) Length = 419 | Back alignment and structure |
|
| >pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium Falciparum Glutamate Dehydrogenase 2 Length = 456 | Back alignment and structure |
|
| >pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase Length = 448 | Back alignment and structure |
|
| >pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli Length = 450 | Back alignment and structure |
|
| >pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source Length = 447 | Back alignment and structure |
|
| >pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain Flexibility In Bacterial Glutamate Dehydrogenases Length = 447 | Back alignment and structure |
|
| >pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase Length = 449 | Back alignment and structure |
|
| >pdb|1HRD|A Chain A, Glutamate Dehydrogenase Length = 449 | Back alignment and structure |
|
| >pdb|1AUP|A Chain A, Glutamate Dehydrogenase Length = 449 | Back alignment and structure |
|
| >pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate Dehydrogenase, A Putative Target For Novel Antimalarial Drugs Length = 470 | Back alignment and structure |
|
| >pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355 | Back alignment and structure |
|
| >pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355 | Back alignment and structure |
|
| >pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And L-3-Phenyllactate Length = 355 | Back alignment and structure |
|
| >pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356 | Back alignment and structure |
|
| >pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356 | Back alignment and structure |
|
| >pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Phenylpyruvate Length = 356 | Back alignment and structure |
|
| >pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex With Nadh And L-Phenylalanine Length = 355 | Back alignment and structure |
|
| >pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex With Nad+ And Beta-Phenylpropionate Length = 356 | Back alignment and structure |
|
| >pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A Psychrophilic Bacterium Sporosarcina Psychrophila. Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 262 | |||
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 1e-140 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 1e-138 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 1e-137 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 1e-136 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 1e-135 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 1e-135 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 1e-134 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 1e-118 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 2e-93 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 4e-93 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 6e-84 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 7e-80 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 3e-79 | |
| 2yfg_A | 447 | NADP-specific glutamate dehydrogenase; oxidoreduct | 6e-76 |
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-140
Identities = 134/262 (51%), Positives = 187/262 (71%), Gaps = 1/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMDTYS T+PG+VTGKPI++GGS GR+ ATGRGVFI + A KI L + ++
Sbjct: 178 MAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGAR 237
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
++IQGFGNVG+ AA F GA++VA+QD T+YN G + L ++V ++ + +
Sbjct: 238 VAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPK 297
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
E + + +FW +P + L+PAA+E QIT NA + A+I+ EGANGPTT ADDIL +KG
Sbjct: 298 AEPL-PAADFWGLPVEFLVPAALEKQITEQNAWRIRARIVAEGANGPTTPAADDILLEKG 356
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
+++ PDVI NAGGV VSYFEWVQ+ ++ WTE+EIN RL ++ NAF+A+W++A KK+
Sbjct: 357 VLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIP 416
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LRTAA+++ TRVL+A RGL
Sbjct: 417 LRTAAYVVAATRVLEARALRGL 438
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415 | Back alignment and structure |
|---|
Score = 393 bits (1012), Expect = e-138
Identities = 109/263 (41%), Positives = 167/263 (63%), Gaps = 2/263 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
++W MD Y +T+ GIVTGKP+ +GGS GR++ATGRGV + + ++ +
Sbjct: 152 IAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKAT 211
Query: 61 ISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+++QGFGNVG AA L + G+K+VA+ D + IYNP GF++ +L +Y ++ +
Sbjct: 212 VAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYP 271
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDK 179
+GE+I ++E + DIL+PAA+E I NA + AK ++EGANGPTT EAD+IL +
Sbjct: 272 KGERI-TNEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRR 330
Query: 180 GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239
GI++ PD++ NAGGV VSYFEWVQ+L + W ++ L ++ AF+ + ++ V
Sbjct: 331 GILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 390
Query: 240 SLRTAAFIIGCTRVLQAHKTRGL 262
+RTAA+I+ RV A K RG+
Sbjct: 391 DMRTAAYILAIDRVAYATKKRGI 413
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-137
Identities = 110/262 (41%), Positives = 165/262 (62%), Gaps = 2/262 (0%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WMMD YS + + PG +TGKP+ +GGS GR+ AT +GV I + K + + N++
Sbjct: 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNAR 223
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
I IQGFGN GS A AGAK++ I D +YNP+G +IP L + +
Sbjct: 224 IIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL-F 282
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+ I ++E CDIL+PAAI +QIT NA+N+ A I++E ANGPTT +A IL ++G
Sbjct: 283 TDVI-TNEELLEKDCDILVPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERG 341
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
++L PD++ +AGGV VSYFEWVQN W+E+E+ +L +++ ++F+ I++ A T KV
Sbjct: 342 VLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVD 401
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
+R AA++ G + +A + RG
Sbjct: 402 MRLAAYMTGIRKSAEASRFRGW 423
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-136
Identities = 101/268 (37%), Positives = 152/268 (56%), Gaps = 6/268 (2%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+WM+D YS K Y +PG+ T KP + G+ R+ ATG GV + ++A K+ I
Sbjct: 153 MAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKT 212
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI----- 115
++IQG GNVG A K GAK++A+ D Y G N+ +QK T
Sbjct: 213 VAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELF 272
Query: 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDI 175
+ E + + + + DI +PAAIE+ I +NA V A++++EGANGPTT EA+ I
Sbjct: 273 TTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERI 332
Query: 176 LRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELAN 235
L ++G+++ PD++ NAGGVI+SY EWV+NL +W E+E RL NI+ N + +++
Sbjct: 333 LYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQ 392
Query: 236 T-KKVSLRTAAFIIGCTRVLQAHKTRGL 262
K ++R AA + R+ A K RG
Sbjct: 393 REKGWTMRDAAIVTALERIYNAMKIRGW 420
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-135
Identities = 99/268 (36%), Positives = 153/268 (57%), Gaps = 7/268 (2%)
Query: 1 MSWMMDTYSTKKNYTI-PGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINS 59
MSW +D Y + G TGKP++ GGS GR +ATG GV ++ + A + + + ++
Sbjct: 154 MSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDA 213
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT-----TIYNPNGFNIPKLQKYVTFTRS 114
KI++QGFGNVG+ + G K+ AI + +YN NG + +L Y ++
Sbjct: 214 KIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKT 273
Query: 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADD 174
+ F E+I +EFW+ DI++PAA+E+ IT A + AK++ E ANGPTT E D
Sbjct: 274 LIGFPGAERI-TDEEFWTKEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDK 332
Query: 175 ILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 234
+L ++GI L PD++TN+GGV+VSY+EWVQN WTE E+ + + A ++ +A
Sbjct: 333 VLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVA 392
Query: 235 NTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ V+LR A ++ + A K RG
Sbjct: 393 DEYNVTLREAVYMYAIKSIDVAMKLRGW 420
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-135
Identities = 79/262 (30%), Positives = 139/262 (53%), Gaps = 5/262 (1%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
M+W+MDTYS T+PG+VTGKP ++GGS GR A G G ++ +A + L++ ++
Sbjct: 161 MAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGAR 220
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE 120
+ +QG G VG+ A + G ++VA+ +Y P G ++ ++ T S+ +
Sbjct: 221 VVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL 280
Query: 121 GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKG 180
+E + + ++L+ AA E + + A V A+ ++E AN EA+ L KG
Sbjct: 281 -----APEEVFGLEAEVLVLAAREGALDGDRARQVQAQAVVEVANFGLNPEAEAYLLGKG 335
Query: 181 IILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240
++ PD+++ GG++ SY EWVQ+L+ W+ +E+ R + DA+ A +
Sbjct: 336 ALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLD 395
Query: 241 LRTAAFIIGCTRVLQAHKTRGL 262
LR A + R+ +A + RG+
Sbjct: 396 LRMGALALALERLDEATRLRGV 417
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-134
Identities = 116/265 (43%), Positives = 161/265 (60%), Gaps = 5/265 (1%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNII- 57
M+WMMD Y T P GI+TGKP+SIGGS GR +AT RG + A + + +
Sbjct: 152 MAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLK 211
Query: 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116
I+IQG+GN G A + + G K+VA+ D K IYNP+G N ++ K+ S+K
Sbjct: 212 GKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVK 271
Query: 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDIL 176
DF I ++E + D+L PAAIE+ IT NA+N+ AKI+ E ANGP T EAD+IL
Sbjct: 272 DFPGATNI-TNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEIL 330
Query: 177 RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 236
+KGI+ PD + NAGGV VSYFEWVQN++ WT +E+ RL+ + AF ++ +A
Sbjct: 331 FEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKE 390
Query: 237 KKVSLRTAAFIIGCTRVLQAHKTRG 261
K + +R AA+++ RV QA RG
Sbjct: 391 KNIHMRDAAYVVAVQRVYQAMLDRG 415
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-118
Identities = 97/325 (29%), Positives = 143/325 (44%), Gaps = 65/325 (20%)
Query: 1 MSWMMDTYSTKKNY---TIPGIVTGKPISIGGSFGRQKATGRGVFII--------GSKIA 49
MSW+ DTY++ + VTGKPIS GG GR ATGRGVF
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSI 235
Query: 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109
+ + +QGFGNVG + + GAK + + + +I+NP+G + +L+ +
Sbjct: 236 LGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFK 295
Query: 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTT 169
+I F + + + CDILIPAA E Q+T +NA V AKII EGANGPTT
Sbjct: 296 LQHGTILGFPKAKIYEG--SILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTT 353
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQE--------------- 214
EAD I ++ I++ PD+ NAGGV VSYFEW+ NL+++ +
Sbjct: 354 PEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSV 413
Query: 215 -----------------------------------INLRLNNIICNAFDAIWELANTKK- 238
++ L + + I A
Sbjct: 414 QESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNL 473
Query: 239 -VSLRTAAFIIGCTRVLQAHKTRGL 262
+ LRTAA++ +V + + G+
Sbjct: 474 GLDLRTAAYVNAIEKVFRVYNEAGV 498
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 2e-93
Identities = 53/265 (20%), Positives = 89/265 (33%), Gaps = 38/265 (14%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKI--NLNIIN 58
M + VTG + G S T GV+ A + + ++
Sbjct: 123 MDLIHQET---------DYVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEG 173
Query: 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118
+S+QG GNV GAK+V +K + +
Sbjct: 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVS------------------AAVAE 215
Query: 119 NEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILR 177
+ + + + CDI P A+ + + AK+I A N L
Sbjct: 216 EGADAV-APNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLH 274
Query: 178 DKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237
+ GI+ APD + NAGGVI E + R++ I ++ + I+ ++
Sbjct: 275 ELGIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDGIY-DSIEKIFAISKRD 327
Query: 238 KVSLRTAAFIIGCTRVLQAHKTRGL 262
V AA + R+ + K R
Sbjct: 328 GVPSYVAADRMAEERIAKVAKARSQ 352
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 277 bits (711), Expect = 4e-93
Identities = 61/263 (23%), Positives = 101/263 (38%), Gaps = 37/263 (14%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNII-NS 59
M + DT V G+ + GG+ T GVF + L +
Sbjct: 126 MDTLNDTTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGL 176
Query: 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN 119
+ +QG G VG A+L +AGA+++ D + + +
Sbjct: 177 TVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-------------- 222
Query: 120 EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE-ADDILRD 178
++ S PCD+ P A+ IT A + ++ AN E A DIL
Sbjct: 223 ------ALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHA 276
Query: 179 KGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKK 238
+GI+ APD + NAGG I + L W+E ++ R I + + ++E+++
Sbjct: 277 RGILYAPDFVANAGGAI-----HLVGREVLGWSESVVHERAVAIG-DTLNQVFEISDNDG 330
Query: 239 VSLRTAAFIIGCTRVLQAHKTRG 261
V+ AA + R +A T
Sbjct: 331 VTPDEAARTLAGRRAREASTTTA 353
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Length = 449 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 6e-84
Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 13/275 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ +M Y G++TGK S GGS R +ATG G + N ++
Sbjct: 173 IGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKT 232
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-----SI 115
+++ GFGNV AA + GAK V + IY+P G + Y+ R +
Sbjct: 233 VALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKV 292
Query: 116 KDFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTT 170
+D+ + G + ++ W DI++P A ++ + + A + A K +E AN PTT
Sbjct: 293 QDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTN 352
Query: 171 EADDIL-RDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229
EA L + +++AP NAGGV+VS FE QN L WT +E++ +L+ ++ + D
Sbjct: 353 EALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDG 412
Query: 230 IWELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 262
A +L A I+G ++ A +G+
Sbjct: 413 SAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Length = 456 | Back alignment and structure |
|---|
Score = 246 bits (631), Expect = 7e-80
Identities = 85/274 (31%), Positives = 131/274 (47%), Gaps = 13/274 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ ++ Y KN G++TGK I GGS R +ATG GV + +N N+ N K
Sbjct: 183 IGYLFGQYKKLKNSF-EGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKK 241
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIK 116
+ G GNV + GA ++ + D I PNGF +L + +K
Sbjct: 242 CLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLK 301
Query: 117 DFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTT 170
++ + K ++++ W+IPCDI P A +++I N+A+ K+I+EGAN PT
Sbjct: 302 EYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHI 361
Query: 171 EADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAI 230
+A L+ IIL P NAGGV VS E QN L WT QE +++L NI+ + ++
Sbjct: 362 KALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYEQC 421
Query: 231 WELANT--KKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ + L A I G +V + +G
Sbjct: 422 HNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Length = 470 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 3e-79
Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 16/276 (5%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ ++ Y N G +TGK + GGS R +ATG G+ ++ +N+ +
Sbjct: 196 IGYLYGQYKKIVNSF-NGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQT 254
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQ-----KYVTFTRSI 115
+ G GNV K++ + D +Y PNGF L+ K R I
Sbjct: 255 AVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGR-I 313
Query: 116 KDFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTT 169
K++ K +++ W +PC + P A ++ + ++ A + ++ EGAN P+T
Sbjct: 314 KEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPST 373
Query: 170 TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229
+A ++ + II P NAGGV +S E QN WT + ++ +L I+ N F A
Sbjct: 374 VDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIA 433
Query: 230 IWELA---NTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
E A K L+ A I G +V +++ +G
Sbjct: 434 CSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469
|
| >2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A {Escherichia coli} PDB: 3sbo_A 2yfg_E Length = 447 | Back alignment and structure |
|---|
Score = 236 bits (604), Expect = 6e-76
Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 11/272 (4%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSK 60
+ +M N T + TGK +S GGS R +ATG G+ + + + +
Sbjct: 176 VGFMAGMMKKLSNNT-ACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMR 234
Query: 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR----SIK 116
+S+ G GNV A + GA+++ D T+ + +GF KL + + +
Sbjct: 235 VSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVA 294
Query: 117 DFNE--GEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTA---KIILEGANGPTTTE 171
D+ + G + ++ WS+P DI +P A ++++ ++ A+ + A K + EGAN PTT E
Sbjct: 295 DYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIE 354
Query: 172 ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIW 231
A ++ + G++ AP NAGGV S E QN + L W ++++ RL++I+ + A
Sbjct: 355 ATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHACV 414
Query: 232 ELANTK-KVSLRTAAFIIGCTRVLQAHKTRGL 262
E + + A I G +V A +G+
Sbjct: 415 EHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 446
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 262 | |||
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 100.0 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 100.0 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 100.0 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 100.0 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 100.0 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 100.0 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 100.0 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 100.0 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 100.0 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 100.0 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 100.0 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 100.0 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 100.0 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 100.0 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 98.8 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 98.77 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 98.68 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.54 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.53 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.5 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.49 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.48 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.47 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.45 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.42 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.42 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 98.4 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.39 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.35 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.31 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.3 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.27 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.26 | |
| 1gq2_A | 555 | Malic enzyme; oxidoreductase, pigeon liver, NADP-d | 98.25 | |
| 1o0s_A | 605 | NAD-ME, NAD-dependent malic enzyme; oxidoreductase | 98.23 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 98.21 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 98.19 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 98.18 | |
| 1pj3_A | 564 | NAD-dependent malic enzyme, mitochondrial; oxidati | 98.18 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.18 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.17 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.14 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.14 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.13 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 98.1 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 98.09 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.08 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.08 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.07 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.06 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.05 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.04 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.03 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.03 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.02 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.02 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 98.01 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.99 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.99 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.97 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.93 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 97.91 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 97.9 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.89 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.89 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.88 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.88 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.87 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.87 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 97.87 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.86 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 97.85 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.84 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 97.83 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.82 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.81 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.8 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.79 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.78 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 97.76 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.76 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.75 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.75 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.75 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 97.74 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 97.73 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 97.72 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.72 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.69 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 97.69 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.68 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 97.67 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.66 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 97.66 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.65 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.64 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.62 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.62 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.61 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.6 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.6 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.6 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 97.6 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.58 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.58 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.58 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.57 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.57 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.56 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.56 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 97.56 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.55 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.55 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.54 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.54 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.53 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.53 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.52 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.52 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.51 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.51 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.48 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.48 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.46 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.46 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.45 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.44 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.44 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.44 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.42 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.39 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.39 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.37 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.37 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.37 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.35 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.34 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 97.34 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.34 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.32 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.31 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.3 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.3 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.3 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.28 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.27 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.27 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.26 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.24 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 97.23 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.23 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.22 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.2 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.2 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.2 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.18 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.18 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.17 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.16 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.16 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.16 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.16 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.15 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.14 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.13 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.11 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.11 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.1 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.1 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.06 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.06 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.06 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.06 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.05 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 97.05 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.04 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.03 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.03 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.01 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.01 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.01 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.01 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.0 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.0 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 96.98 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.97 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 96.97 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.97 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.95 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 96.95 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.94 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.91 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.9 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 96.89 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 96.89 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.89 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 96.88 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.87 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.87 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.86 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.81 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.8 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 96.79 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 96.79 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 96.78 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.78 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 96.78 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.76 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.76 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.75 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 96.75 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.75 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.7 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 96.68 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.66 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.64 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.64 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.64 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.63 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 96.63 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.62 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 96.61 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 96.61 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.6 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.6 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.6 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 96.58 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.58 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 96.56 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 96.54 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 96.52 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.52 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 96.51 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.5 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 96.49 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 96.48 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 96.48 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 96.48 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 96.47 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.46 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.46 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.45 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.4 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 96.38 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.38 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 96.37 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 96.36 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 96.34 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.31 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 96.3 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.28 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.27 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.25 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 96.22 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.19 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.15 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.14 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 96.12 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 96.11 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 96.02 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 96.02 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 95.95 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.93 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 95.9 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 95.9 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 95.87 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 95.86 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.8 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 95.8 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.78 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.78 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 95.74 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.7 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 95.7 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 95.69 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.69 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 95.65 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.55 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.54 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.51 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.48 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.44 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.43 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 95.42 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 95.41 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 95.4 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 95.37 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 95.36 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.32 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.24 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 95.23 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 95.19 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.18 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 95.12 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.08 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 95.02 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 94.99 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 94.99 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 94.95 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 94.92 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.9 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.89 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.83 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.82 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.78 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.75 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 94.69 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 94.66 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.6 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.58 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 94.57 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 94.57 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.55 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 94.51 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.49 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.46 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.44 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.39 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.34 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 94.32 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 94.3 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.26 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.24 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 94.15 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.14 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.12 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 94.08 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.07 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 94.06 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 94.04 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 94.01 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 93.93 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.93 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 92.98 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 93.89 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 93.88 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.81 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 93.81 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.81 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.79 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 93.79 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.75 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.74 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.73 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.73 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.71 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 93.7 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.67 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.61 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.59 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 93.57 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 93.55 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 93.5 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.5 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.5 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.42 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 93.36 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 93.35 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.33 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.31 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 93.3 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.29 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 93.28 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.28 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 93.23 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 93.18 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 93.13 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 93.12 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 93.11 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.1 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 93.1 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.08 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 93.07 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 93.03 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 93.0 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 92.97 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 92.97 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 92.94 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.94 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 92.94 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.85 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.78 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 92.66 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 92.62 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 92.56 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.49 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 92.45 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 92.45 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 92.45 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 92.45 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 92.44 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.43 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.4 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.38 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 92.37 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 92.36 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.34 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 92.27 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 92.18 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 92.17 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 92.13 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 92.13 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 92.05 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.03 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 92.03 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.03 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 92.01 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 91.99 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 91.99 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 91.98 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 91.97 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.96 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.91 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.91 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 91.86 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 91.84 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 91.81 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 91.81 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.77 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 91.68 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.65 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 91.62 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 91.62 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 91.6 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 91.59 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.55 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 91.54 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 91.51 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.48 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 91.47 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.47 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 91.46 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 91.43 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 91.43 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 91.36 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 91.35 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 91.35 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.34 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 91.34 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 91.33 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 91.3 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 91.28 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 91.1 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 91.06 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 91.06 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 91.05 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 91.03 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.01 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 90.99 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 90.93 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 90.92 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 90.92 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 90.92 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 90.9 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 90.89 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 90.88 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 90.88 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 90.87 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 90.87 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 90.85 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 90.84 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 90.82 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 90.81 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 90.8 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 90.76 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 90.75 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 90.74 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 90.74 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 90.7 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.67 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 90.66 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 90.64 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 90.63 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 90.62 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 90.62 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.61 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 90.6 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 90.55 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 90.55 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 90.55 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 90.5 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 90.46 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 90.41 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 90.4 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.37 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 90.36 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.33 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 90.26 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.22 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 90.21 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 90.2 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 90.18 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 90.17 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 90.13 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 90.1 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 90.07 |
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-75 Score=548.02 Aligned_cols=260 Identities=42% Similarity=0.778 Sum_probs=254.6
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++|+++++++||||+.+|||.+|.++|||||+++++++++++|.+++++||+||||||||+++|++|.+.
T Consensus 164 m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~ 243 (424)
T 3k92_A 164 MAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA 243 (424)
T ss_dssp HHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHHHHHHHHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC
Confidence 79999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+|+|++|++|||+|||+++|++++++++++.+|| ++.++ ++++|+.+||||+|||++++||++|+++++||+|
T Consensus 244 GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~-a~~~~-~~~i~~~~~DIliPcA~~n~I~~~~a~~l~ak~V 321 (424)
T 3k92_A 244 GAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLF-TDVIT-NEELLEKDCDILVPAAISNQITAKNAHNIQASIV 321 (424)
T ss_dssp TCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGC-SCCBC-HHHHHHSCCSEEEECSCSSCBCTTTGGGCCCSEE
T ss_pred CCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCC-cEEec-CccceeccccEEeecCcccccChhhHhhcCceEE
Confidence 999999999999999999999999999999999999997 67776 7889999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||+++++|++++|.++|+++|.++++++++.|++++++
T Consensus 322 ~EgAN~p~t~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~l~~~m~~~~~~v~~~a~~~~~~ 401 (424)
T 3k92_A 322 VERANGPTTIDATKILNERGVLLVPDILASAGGVTVSYFEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVD 401 (424)
T ss_dssp ECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EcCCCCCCCHHHHHHHHHCCCEEECchHhcCCCEEeehhHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+|+|||++|++||+++|+.|||
T Consensus 402 ~~~aA~~~a~~rva~a~~~~G~ 423 (424)
T 3k92_A 402 MRLAAYMTGIRKSAEASRFRGW 423 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999996
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-73 Score=535.33 Aligned_cols=261 Identities=51% Similarity=0.925 Sum_probs=255.8
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++|+++++++||||+.+|||.+|.++|||||+++++++++++|.+++++||+||||||||++++++|.++
T Consensus 178 m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~ 257 (440)
T 3aog_A 178 MAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDH 257 (440)
T ss_dssp HHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHC
Confidence 79999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+|+|++|++|||+|||+++|++++++++++.+|++++.++ ++++|+.+||||+|||++|.||++||++++||+|
T Consensus 258 GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~-~~ei~~~~~DIlvPcA~~n~i~~~na~~l~ak~V 336 (440)
T 3aog_A 258 GARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLP-AADFWGLPVEFLVPAALEKQITEQNAWRIRARIV 336 (440)
T ss_dssp TCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECC-HHHHTTCCCSEEEECSSSSCBCTTTGGGCCCSEE
T ss_pred CCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcC-chhhhcCCCcEEEecCCcCccchhhHHHcCCcEE
Confidence 999999999999999999999999999999999999999888776 7789999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||.+++.|++|+|.++|+++|.++++++++.|++++++
T Consensus 337 vEgAN~p~t~eA~~iL~~~GI~~~PD~~aNaGGV~vS~~E~~qN~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~~~ 416 (440)
T 3aog_A 337 AEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEINARLERVLRNAFEAVWQVAQEKKIP 416 (440)
T ss_dssp ECCSSSCBCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EecCccccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+|+|||++|++||+++|..|||
T Consensus 417 ~~~aA~~~a~~rva~a~~~~G~ 438 (440)
T 3aog_A 417 LRTAAYVVAATRVLEARALRGL 438 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999996
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-72 Score=528.28 Aligned_cols=257 Identities=31% Similarity=0.591 Sum_probs=250.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++|+++++++||||..+|||.+|.++|||||+++++++++++|.+++++||+||||||||++++++|.+.
T Consensus 161 m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~~ 240 (419)
T 3aoe_E 161 MAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERL 240 (419)
T ss_dssp HHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHHC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEE
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKII 160 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiI 160 (262)
|++||+|+|++|++|||+|||++++.+++++++++.+| .++ ++++++.+||||+||+++|.||++++++++||+|
T Consensus 241 GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~----~~~-~~e~~~~~~DVliP~A~~n~i~~~~A~~l~ak~V 315 (419)
T 3aoe_E 241 GMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRL----DLA-PEEVFGLEAEVLVLAAREGALDGDRARQVQAQAV 315 (419)
T ss_dssp TCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCC----CBC-TTTGGGSSCSEEEECSCTTCBCHHHHTTCCCSEE
T ss_pred CCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCccee----ecc-chhhhccCceEEEecccccccccchHhhCCceEE
Confidence 99999999999999999999999999999998888877 345 6788999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy14499 161 LEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVS 240 (262)
Q Consensus 161 ve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~ 240 (262)
+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||++++.|++|+|.++|+++|.++++++++.|++++++
T Consensus 316 ~EgAN~p~t~~A~~~L~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~l~~im~~~~~~v~~~a~~~~~~ 395 (419)
T 3aoe_E 316 VEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWSPEEVRERFETRVARVVDAVCRRAERGGLD 395 (419)
T ss_dssp EECSTTCBCHHHHHHHHHHTCEEECHHHHTCHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred EECCCCcCCHHHHHHHHHCCCEEECHHHHhCCCchhhHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q psy14499 241 LRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 241 ~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+|+|||++|++||+++|..||+
T Consensus 396 ~~~aA~~~a~~rv~~a~~~~G~ 417 (419)
T 3aoe_E 396 LRMGALALALERLDEATRLRGV 417 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999996
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-72 Score=526.05 Aligned_cols=261 Identities=42% Similarity=0.780 Sum_probs=254.3
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK- 79 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~- 79 (262)
|+||+|+|++++|+++++++||||..+|||.+|.++|||||+++++++++++|.+++++||+||||||||++++++|.+
T Consensus 152 m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e~ 231 (415)
T 2tmg_A 152 IAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQE 231 (415)
T ss_dssp HHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHHHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceE
Q psy14499 80 AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKI 159 (262)
Q Consensus 80 ~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~ki 159 (262)
+|++||+|+|++|++|||+|||++++.+++++++++.+|++++.++ ++++|+.+||||+|||+++.||++|+++++||+
T Consensus 232 ~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~-~~eil~~~~DIliP~A~~n~i~~~~a~~l~ak~ 310 (415)
T 2tmg_A 232 LGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERIT-NEELLELDVDILVPAALEGAIHAGNAERIKAKA 310 (415)
T ss_dssp TCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEEC-HHHHTTCSCSEEEECSSTTSBCHHHHTTCCCSE
T ss_pred cCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcC-chhhhcCCCcEEEecCCcCccCcccHHHcCCeE
Confidence 9999999999999999999999999999999999999999888886 778999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 160 ILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 160 Ive~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
|+||||+|+||+|+++|++|||.|+||+++|+|||++||+||+||.++.+|++++|.++|+++|.++++++++.|+++++
T Consensus 311 V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~s~~E~vqN~~~~~w~~e~v~~~l~~~m~~~~~~v~~~A~~~g~ 390 (415)
T 2tmg_A 311 VVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNV 390 (415)
T ss_dssp EECCSSSCBCHHHHHHHHHTTCEEECHHHHTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCcccCHHHHHHHHHCCCEEEChHHHhCCCceEEEEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 240 SLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 240 ~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++|+|||++|++||+++|..||+
T Consensus 391 ~~~~aA~~~a~~rv~~a~~~~G~ 413 (415)
T 2tmg_A 391 DMRTAAYILAIDRVAYATKKRGI 413 (415)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999996
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-72 Score=531.86 Aligned_cols=261 Identities=39% Similarity=0.672 Sum_probs=253.7
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++|+++++++||||..+|||.+|.++|||||+++++++++++|.++++++|+||||||||++++++|.++
T Consensus 153 m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e~ 232 (421)
T 1v9l_A 153 MAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKM 232 (421)
T ss_dssp HHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHHHHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHC
Confidence 79999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCc---eec-CCCccccccCceEEeeCCccCcccccchhc
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEG---EKI-NDSKEFWSIPCDILIPAAIEDQITINNANN 154 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~---~~~-~~~~~il~~~~DIlipaa~~~~it~e~a~~ 154 (262)
|+|||+|+|++|++|||+|||++++.++++++++ +.+|+++ +.+ + ++++|+.+||||+||+.++.||.+|+++
T Consensus 233 GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~-~~~~~~~~~Dil~P~A~~~~I~~~~a~~ 311 (421)
T 1v9l_A 233 GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKN-PDAIFKLDVDIFVPAAIENVIRGDNAGL 311 (421)
T ss_dssp TCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSS-TTGGGGCCCSEEEECSCSSCBCTTTTTT
T ss_pred CCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCC-chhhhcCCccEEEecCcCCccchhhHHH
Confidence 9999999999999999999999999999988888 8888765 667 6 7889999999999999999999999999
Q ss_pred cCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14499 155 VTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 234 (262)
Q Consensus 155 ~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a 234 (262)
++||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||++++.|++++|.++|+++|.++++++++.|
T Consensus 312 l~ak~V~EgAN~p~t~~a~~~l~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~~a 391 (421)
T 1v9l_A 312 VKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRW 391 (421)
T ss_dssp CCCSEEECCSSSCBCHHHHHHHHTTTCEEECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEecCCCcCCHHHHHHHHHCCCEEeChHHhhCCCeeeeHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hcCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 235 N-TKKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 235 ~-~~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+ ++++++|+|||++|++||+++|..||+
T Consensus 392 ~~~~~~~~~~aA~~~a~~rv~~a~~~~G~ 420 (421)
T 1v9l_A 392 QREKGWTMRDAAIVTALERIYNAMKIRGW 420 (421)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9 999999999999999999999999996
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-72 Score=530.22 Aligned_cols=260 Identities=32% Similarity=0.517 Sum_probs=247.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++.+. .++++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|++.
T Consensus 183 m~w~~~~y~~~~~~-~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~ 261 (456)
T 3r3j_A 183 IGYLFGQYKKLKNS-FEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEK 261 (456)
T ss_dssp HHHHHHHHHHHHTS-CCCSCBSCCGGGTCCTTTTTHHHHHHHHHHHHHHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCc-ccceecCCcccccCCCCCCcccchHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHC
Confidence 89999999999854 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHH---HHh-cCCccCC----CCceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKY---VTF-TRSIKDF----NEGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~---~~~-~g~~~~~----~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|+|++|+||||+|||+++|.++ +++ .+++.+| |+++.++ ++++|+.+||||+|||.+++||.+|+
T Consensus 262 GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v~-~~~i~~~~~DI~iPcA~~~~I~~~na 340 (456)
T 3r3j_A 262 GAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFE-NQKPWNIPCDIAFPCATQNEINENDA 340 (456)
T ss_dssp TCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEEC-SCCGGGSCCSEEEECSCTTCBCHHHH
T ss_pred CCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEeC-CccccccCccEEEeCCCccchhhHHH
Confidence 9999999999999999999999998765 444 3456655 7888887 78899999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||||+++|++|||+|+||+++|+|||++||+||+||.++++|++|+|.++|+++|.+++++
T Consensus 341 ~~l~~~~ak~V~EgAN~p~T~eA~~iL~~rGI~~~PD~~aNAGGV~vS~~E~~qn~~~~~w~~eeV~~~L~~im~~~~~~ 420 (456)
T 3r3j_A 341 DLFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQWTHQETDMKLQNIMKSIYEQ 420 (456)
T ss_dssp HHHHHHTCCEEECCSSSCBCTTHHHHHHTTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEecCCCCCCHHHHHHHHHCCCEEeChHHhcCCceeeehHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~~~--~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.|+++++ ++|+|||+.|++||++||+.||+
T Consensus 421 ~~~~a~~~~~~~~~r~aA~i~~~~rva~a~~~~G~ 455 (456)
T 3r3j_A 421 CHNTSKIYLNESDLVAGANIAGFLKVADSFLEQGG 455 (456)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHhccHHHHHHHHHHHHhcCC
Confidence 9999999988 99999999999999999999996
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-72 Score=529.10 Aligned_cols=261 Identities=38% Similarity=0.689 Sum_probs=236.5
Q ss_pred CchhhhHhhhhcCCc-CCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYT-IPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK 79 (262)
Q Consensus 1 m~w~~d~y~~~~g~~-~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~ 79 (262)
|+||+|+|++++|++ +++++||||+.+|||.+|.++|||||+++++++++++|.+++++||+||||||||++++++|.+
T Consensus 154 m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~ 233 (421)
T 2yfq_A 154 MSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIER 233 (421)
T ss_dssp HHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHHHHHHHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH
Confidence 799999999999987 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCC-----ceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhc
Q psy14499 80 AGAKIVAIQDDK-----TTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANN 154 (262)
Q Consensus 80 ~g~~vv~V~D~~-----G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~ 154 (262)
+|++||+|+|++ |++|||+|||+++|.+++++++++.+|++++.++ ++++|+.+||||+|||++|.||++|+++
T Consensus 234 ~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~-~~~~~~~~~DIliP~A~~n~i~~~~A~~ 312 (421)
T 2yfq_A 234 QGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERIT-DEEFWTKEYDIIVPAALENVITGERAKT 312 (421)
T ss_dssp TTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------------CEEECSCSSCSCHHHHTT
T ss_pred CCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeC-ccchhcCCccEEEEcCCcCcCCcccHHH
Confidence 999999999999 9999999999999999999999999998888787 7789999999999999999999999999
Q ss_pred cCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy14499 155 VTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELA 234 (262)
Q Consensus 155 ~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a 234 (262)
++||+|+||||+|+||+|+++|++|||.|+||+++|+|||++||+||+||.++.+|++|+|.++|+++|..+++++++.|
T Consensus 313 l~ak~VvEgAN~P~t~ea~~il~~~GI~~~Pd~~aNaGGV~vS~~E~~qN~~~~~w~~e~V~~~l~~~m~~~~~~v~~~A 392 (421)
T 2yfq_A 313 INAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSGGVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVA 392 (421)
T ss_dssp CCCSEEECCSSSCSCHHHHHHHHHHTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEeCCccccCHHHHHHHHHCCCEEEChHHHhCCCeEEEEEEEEecCccCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 235 NTKKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 235 ~~~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++++++|+|||++|++||+++|..|||
T Consensus 393 ~~~g~~~~~aA~~~a~~rv~~a~~~~G~ 420 (421)
T 2yfq_A 393 DEYNVTLREAVYMYAIKSIDVAMKLRGW 420 (421)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999996
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-71 Score=527.68 Aligned_cols=260 Identities=38% Similarity=0.605 Sum_probs=246.0
Q ss_pred CchhhhHhhhhcCCc---CCceEecccCCCCccCCCCChhHHHHHHHHHHHH------HHhCC--CCCCCeEEEEcCCHH
Q psy14499 1 MSWMMDTYSTKKNYT---IPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIA------SKINL--NIINSKISIQGFGNV 69 (262)
Q Consensus 1 m~w~~d~y~~~~g~~---~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~------~~~g~--~l~~~~v~IqGfG~V 69 (262)
|+||+|+|++++|.+ .++++||||+.+|||++|.++|||||++++++++ +.+|. +++|+||+|||||||
T Consensus 176 M~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNV 255 (501)
T 3mw9_A 176 MSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNV 255 (501)
T ss_dssp HHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHH
T ss_pred HHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHHHHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHH
Confidence 899999999999975 4799999999999999999999999999999754 46786 589999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccc
Q psy14499 70 GSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI 149 (262)
Q Consensus 70 G~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~ 149 (262)
|+++|++|.+.|++||+|+|++|+||||+|||+++|.+++++++++.+||+++.++ +++|+.+||||+|||.+++||.
T Consensus 256 G~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~--~~il~~~~DIliPcA~~n~I~~ 333 (501)
T 3mw9_A 256 GLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE--GSILEVDCDILIPAASEKQLTK 333 (501)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC--SCGGGSCCSEEEECSSSCCBCT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec--cccccccceEEeeccccCccCH
Confidence 99999999999999999999999999999999999999999999999999988876 3799999999999999999999
Q ss_pred cchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCC--------------CCHHHH
Q psy14499 150 NNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLL--------------WTEQEI 215 (262)
Q Consensus 150 e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~--------------~~~~~v 215 (262)
+|+++++||+|+||||+|+||+|+++|++|||+|+||+++|+|||++|||||+||++++. |+.++|
T Consensus 334 ~na~~l~akiV~EgAN~p~T~eA~~iL~~rGIl~~PD~~aNAGGV~vSy~E~~qn~~~~~~grl~~~~e~~~~~w~~~~v 413 (501)
T 3mw9_A 334 SNAPRVKAKIIAEGANGPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNLNHVSYGRLTFKYERDSNYHLLMSV 413 (501)
T ss_dssp TTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCSCTTTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHcCceEEEeCCCCcCCHHHHHHHHHCCCEEEChHHhcCchHHhhHHHHHhccccccccccchhhhcccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 888888
Q ss_pred HHHHHHH------------------------------------HHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHH
Q psy14499 216 NLRLNNI------------------------------------ICNAFDAIWELANTKK--VSLRTAAFIIGCTRVLQAH 257 (262)
Q Consensus 216 ~~~l~~~------------------------------------~~~~~~~v~~~a~~~~--~~~r~aa~~~a~~rv~~a~ 257 (262)
.++|+++ |.++++++++.|++++ +++|+|||++|++||+++|
T Consensus 414 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~ga~e~d~v~sgL~~~m~~a~~~v~~~a~~~~~~~~lRtAAy~~ai~rv~~a~ 493 (501)
T 3mw9_A 414 QESLERKFGKHGGTIPIVPTAEFQDRISGASEKDIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVY 493 (501)
T ss_dssp HHHHHHHSCTTTCCCCCCCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccccccCchHHHHHHHcCCcHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777665 9999999999999988 6999999999999999999
Q ss_pred HHcCC
Q psy14499 258 KTRGL 262 (262)
Q Consensus 258 ~~rg~ 262 (262)
+.||+
T Consensus 494 ~~~G~ 498 (501)
T 3mw9_A 494 NEAGV 498 (501)
T ss_dssp HHTTS
T ss_pred HHcCc
Confidence 99996
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-71 Score=525.25 Aligned_cols=260 Identities=27% Similarity=0.454 Sum_probs=247.0
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++++.. +++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.
T Consensus 196 m~~~~~~y~~~~~~~~-gvvTGKp~~~GGs~~r~~aTg~Gv~~~~~~~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~ 274 (470)
T 2bma_A 196 IGYLYGQYKKIVNSFN-GTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHL 274 (470)
T ss_dssp HHHHHHHHHHHHCCCS-CSSSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcc-cEEeCCCccCCCCCCccccchHHHHHHHHHHHHhccCCcCCCEEEEECCcHHHHHHHHHHHHC
Confidence 8999999999998764 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCC---CHHHHHHHHHhc-CCccCCC----CceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGF---NIPKLQKYVTFT-RSIKDFN----EGEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~Gl---D~~~l~~~~~~~-g~~~~~~----~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|+|++|+||||+|| |++.|+++++++ +++.+|+ +++.++ ++++|+.+||||+|||.++.||.+|+
T Consensus 275 GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~~~~~~~~~DI~iPcA~~~~I~~~na 353 (470)
T 2bma_A 275 NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-NEKPWGVPCTLAFPCATQNDVDLDQA 353 (470)
T ss_dssp TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-SCCTTSSCCSEEEECSSTTCBCSHHH
T ss_pred CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-CcCeeecCccEEEeccccCcCCHHHH
Confidence 99999999999999999999 555666667664 6888874 567776 67889999999999999999999999
Q ss_pred hcc---CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy14499 153 NNV---TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDA 229 (262)
Q Consensus 153 ~~~---~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 229 (262)
+++ +||+|+||||+|+||+|+++|++|||+|+||+++|+|||++||+||+||++++.|++++|.++|+++|.+++++
T Consensus 354 ~~l~~~~ak~V~EgAN~p~T~eA~~~L~~rGIl~~PD~~aNAGGV~~S~~E~~qn~~~~~w~~eev~~~L~~im~~~~~~ 433 (470)
T 2bma_A 354 KLLQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWTRETVDEKLKEIMRNIFIA 433 (470)
T ss_dssp HHHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhhCCCceeeHHHhhccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC---CHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 230 IWELANTKKV---SLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 230 v~~~a~~~~~---~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++.|+++++ ++|+|||+.|++||++||..|||
T Consensus 434 ~~~~a~~~~~~~~~~r~~A~i~~~~rva~am~~~G~ 469 (470)
T 2bma_A 434 CSENALKYTKNKYDLQAGANIAGFLKVAESYIEQGC 469 (470)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999998 99999999999999999999996
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-69 Score=508.85 Aligned_cols=260 Identities=28% Similarity=0.492 Sum_probs=243.9
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|+++++. .++++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.+.
T Consensus 179 m~~~~~~y~~~~~~-~~~v~TGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~ 257 (450)
T 4fcc_A 179 VGFMAGMMKKLSNN-TACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEF 257 (450)
T ss_dssp HHHHHHHHHHHHTC-CSCCCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhccCC-CceeecCCCcccCCCCCCCCceeeeHHHHHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHHHHhc
Confidence 78999999999764 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCCCHHHHHHHHHh----cCCccCCC---CceecCCCccccccCceEEeeCCccCcccccchh
Q psy14499 81 GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----TRSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNAN 153 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~----~g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~ 153 (262)
|++||+++|++|+||||+|||+++|.++++. .+++.+|+ +++.++ ++++|+.+||||+|||.+++||.++++
T Consensus 258 GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~-~~~i~~~~~DI~iPcAl~~~I~~~~a~ 336 (450)
T 4fcc_A 258 GARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE-GQQPWSVPVDIALPCATQNELDVDAAH 336 (450)
T ss_dssp TCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE-TCCGGGSCCSEEEECSCTTCBCHHHHH
T ss_pred CCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec-CcccccCCccEEeeccccccccHHHHH
Confidence 9999999999999999999999999888763 34444443 566677 889999999999999999999999999
Q ss_pred ccC---ceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14499 154 NVT---AKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAI 230 (262)
Q Consensus 154 ~~~---~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v 230 (262)
+++ ||+|+||||+|+||||+++|++|||+|+||+++|+|||++||+||+||.+++.|++|+|.++|+++|.++++++
T Consensus 337 ~L~a~g~k~IaEgAN~p~t~eA~~iL~~rGIl~~PD~~aNAGGVi~S~~E~~qn~~~~~w~~eeV~~kL~~im~~~~~~~ 416 (450)
T 4fcc_A 337 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARLHHIMLDIHHAC 416 (450)
T ss_dssp HHHHTTCCEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCceEEecCCCCCCCHHHHHHHHHCCCEEEChHHhcCccHhhhHHHHhhhcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 996 69999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 231 WELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 231 ~~~a~~-~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++.+++ +..++|.|||++|++||++||..|||
T Consensus 417 ~~~~~e~~~~~~~~aA~i~a~~rVa~Am~~~G~ 449 (450)
T 4fcc_A 417 VEHGGEGEQTNYVQGANIAGFVKVADAMLAQGV 449 (450)
T ss_dssp HHTSCSSSSCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 998866 56899999999999999999999996
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-68 Score=507.12 Aligned_cols=261 Identities=29% Similarity=0.479 Sum_probs=250.2
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA 80 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~ 80 (262)
|+||+|+|++++++++++++||||..+|||.+|.++|||||+++++++++++|.+++++||+||||||||+.++++|.+.
T Consensus 173 m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~ 252 (449)
T 1bgv_A 173 IGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL 252 (449)
T ss_dssp HHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHHHHHHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 89999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCceeeCCCCC----CHHHHHHHHHhc-CCccCCCC---ceecCCCccccccCceEEeeCCccCcccccch
Q psy14499 81 GAKIVAIQDDKTTIYNPNGF----NIPKLQKYVTFT-RSIKDFNE---GEKINDSKEFWSIPCDILIPAAIEDQITINNA 152 (262)
Q Consensus 81 g~~vv~V~D~~G~i~~~~Gl----D~~~l~~~~~~~-g~~~~~~~---~~~~~~~~~il~~~~DIlipaa~~~~it~e~a 152 (262)
|++||+|+|++|++|||+|| |+++|.++++++ +++.+|++ ++.++ ++++|+.+||||+||+.++.||.+|+
T Consensus 253 GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~-~~e~~~~~~Dil~P~A~~~~I~~~na 331 (449)
T 1bgv_A 253 GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFP-GEKPWGQKVDIIMPCATQNDVDLEQA 331 (449)
T ss_dssp TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-TCCGGGSCCSEEECCSCTTCBCHHHH
T ss_pred CCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeC-chhhhcCCcceeeccccccccchhhH
Confidence 99999999999999999999 667888888876 68888864 67776 67889999999999999999999999
Q ss_pred hccCc---eEEEecCCCCCCHHHHHHHHHC-CCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy14499 153 NNVTA---KIILEGANGPTTTEADDILRDK-GIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFD 228 (262)
Q Consensus 153 ~~~~~---kiIve~AN~p~t~ea~~~l~~r-gi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 228 (262)
++++| |+|+||||+|+||+|+++|++| ||+|+||+++|+|||++||+||+||.++..|++++|.++|+++|.++++
T Consensus 332 ~~l~a~g~kiV~EgAN~p~T~eA~~~l~~~~Gi~~~PD~~aNaGGV~~S~~E~~qn~~~~~w~~eev~~~L~~~m~~~~~ 411 (449)
T 1bgv_A 332 KKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHD 411 (449)
T ss_dssp HHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEeCCCCcCCHHHHHHHHHcCCEEEEChHHhcCCCceeehhhhhcccccccccHHHHHHHHHHHHHHHHH
Confidence 99986 9999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 229 AIWELANTKKV--SLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 229 ~v~~~a~~~~~--~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++++.|+++++ ++|.+||+.|++||+++|..||+
T Consensus 412 ~v~~~a~~~~~~~~~~~~A~i~~~~rv~~a~~~~G~ 447 (449)
T 1bgv_A 412 GSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGI 447 (449)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCCCHHHHhhHHHHHHHHHHHHhcCc
Confidence 99999999999 89999999999999999999996
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-58 Score=437.14 Aligned_cols=261 Identities=44% Similarity=0.752 Sum_probs=251.0
Q ss_pred CchhhhHhhhhcCCcCC--ceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCC-CCCCeEEEEcCCHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTIP--GIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINLN-IINSKISIQGFGNVGSVAANLF 77 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~--~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~-l~~~~v~IqGfG~VG~~~a~~L 77 (262)
|+||+|+|++++|++++ +++||||..+|||.+|.++|||||+++++++++++|.+ ++++||.|||||+||+.+|++|
T Consensus 152 m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l 231 (419)
T 1gtm_A 152 MAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIM 231 (419)
T ss_dssp HHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhHHHHHHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHH
Confidence 79999999999998777 99999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC
Q psy14499 78 FK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT 156 (262)
Q Consensus 78 ~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~ 156 (262)
.+ +|++|++++|+.|.+|+++|+|+++|+++++..+++..||..+.++ .++++..+|||||||+.++++|+++++.++
T Consensus 232 ~~~~G~kVv~~sD~~g~~~~~~gvdl~~L~~~~d~~~~l~~l~~t~~i~-~~~l~~mk~dilIn~ArG~~Vde~a~~aL~ 310 (419)
T 1gtm_A 232 SEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNIT-NEELLELEVDVLAPAAIEEVITKKNADNIK 310 (419)
T ss_dssp HHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEEC-HHHHHHSCCSEEEECSCSCCBCTTGGGGCC
T ss_pred HHhcCCEEEEEeCCCccccCccCCCHHHHHHHHHhcCEeecCccCeeeC-HHHHHhCCCCEEEECCCcccCCHHHHHHhc
Confidence 99 9999999999999999999999999999988778888887766675 667888899999999999999999999999
Q ss_pred ceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14499 157 AKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 236 (262)
Q Consensus 157 ~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~ 236 (262)
++.|+|+||.|++|++.++|..+||.+.||+++|+|||++||+||+||+++.+|+.+++.++++++|.+++.++++.|++
T Consensus 311 ~~~I~~aAneP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~~a~~ 390 (419)
T 1gtm_A 311 AKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKE 390 (419)
T ss_dssp CSEEECCSSSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 237 KKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 237 ~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+++++|+|||++|++||+++|..||+
T Consensus 391 ~~~~~~~aA~~~a~~rv~~a~~~~g~ 416 (419)
T 1gtm_A 391 KNIHMRDAAYVVAVQRVYQAMLDRGW 416 (419)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999996
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=388.86 Aligned_cols=224 Identities=27% Similarity=0.410 Sum_probs=204.1
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFK 79 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~ 79 (262)
|+||+|+|+ ++||||..+|||.+|.++|||||+++++++++++|. +++|++|+|||||+||+.+|++|.+
T Consensus 126 m~~~~~~~~---------~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~ 196 (355)
T 1c1d_A 126 MDTLNDTTE---------FVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAE 196 (355)
T ss_dssp HHHHHHHCS---------CBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHhcC---------eeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHHHHHHHHHHHH
Confidence 799999986 489999999999999999999999999999999998 8999999999999999999999999
Q ss_pred CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceE
Q psy14499 80 AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKI 159 (262)
Q Consensus 80 ~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~ki 159 (262)
+|++|+ ++| .|+++ .++.++. +++.++ .+++|..+||||+||+.++.||.++++.++|++
T Consensus 197 ~GakVv-vsD----------~~~~~-~~~a~~~-------ga~~v~-~~ell~~~~DIliP~A~~~~I~~~~~~~lk~~i 256 (355)
T 1c1d_A 197 AGAQLL-VAD----------TDTER-VAHAVAL-------GHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVARTLDCSV 256 (355)
T ss_dssp TTCEEE-EEC----------SCHHH-HHHHHHT-------TCEECC-GGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSE
T ss_pred CCCEEE-EEe----------CCccH-HHHHHhc-------CCEEeC-hHHhhcCccceecHhHHHhhcCHHHHhhCCCCE
Confidence 999999 999 45554 3444432 345555 678898999999999999999999999999999
Q ss_pred EEecCCCCCCH-HHHHHHHHCCCeEeccccccchhhHHHH-HHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14499 160 ILEGANGPTTT-EADDILRDKGIILAPDVITNAGGVIVSY-FEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237 (262)
Q Consensus 160 Ive~AN~p~t~-ea~~~l~~rgi~~iPD~~aN~GGvi~s~-~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~ 237 (262)
|+|+||+|+++ +|.++|+++||.++||+++|+|||++|| +|| +.|++|+|.++++++| +++++|++.|+++
T Consensus 257 Vie~AN~p~t~~eA~~~L~~~gIlv~Pd~~aNaGGV~~s~~~E~------~~w~~e~v~~~l~~i~-~~~~~i~~~~~~~ 329 (355)
T 1c1d_A 257 VAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREV------LGWSESVVHERAVAIG-DTLNQVFEISDND 329 (355)
T ss_dssp ECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTHHHHHHHHHHT------TCCCHHHHHHHHHTHH-HHHHHHHHHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHhCCEEEECCeEEcCCCeeeeeeehh------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 99999999985 9999999999999999999999999999 999 5699999999999998 7799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHc
Q psy14499 238 KVSLRTAAFIIGCTRVLQAHKTR 260 (262)
Q Consensus 238 ~~~~r~aa~~~a~~rv~~a~~~r 260 (262)
++++|+|||.+|++||.++|..+
T Consensus 330 ~~~~~~aA~~~a~~rv~~a~~~~ 352 (355)
T 1c1d_A 330 GVTPDEAARTLAGRRAREASTTT 352 (355)
T ss_dssp TCCHHHHHHHHHHHHHHHTC---
T ss_pred CcCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=372.22 Aligned_cols=227 Identities=24% Similarity=0.344 Sum_probs=210.4
Q ss_pred CchhhhHhhhhcCCcCCceEecccCCCCccCCCCChhHHHHHHHHHHHHHHh-CC-CCCCCeEEEEcCCHHHHHHHHHHH
Q psy14499 1 MSWMMDTYSTKKNYTIPGIVTGKPISIGGSFGRQKATGRGVFIIGSKIASKI-NL-NIINSKISIQGFGNVGSVAANLFF 78 (262)
Q Consensus 1 m~w~~d~y~~~~g~~~~~~~tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~-g~-~l~~~~v~IqGfG~VG~~~a~~L~ 78 (262)
|+||+|+|+ ++||||+.+||+.+|.++|||||++++++++++. |. +++|++|+|||+|+||+.+|+.|.
T Consensus 123 m~~l~~~~~---------~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~ 193 (364)
T 1leh_A 123 MDLIHQETD---------YVTGISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLN 193 (364)
T ss_dssp HHHHHTTCS---------CBCSCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHhcc---------hhcccccccCCCCCcccchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHHHHHHHHHHH
Confidence 789999985 4899999999999999999999999999999985 87 899999999999999999999999
Q ss_pred HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCce
Q psy14499 79 KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAK 158 (262)
Q Consensus 79 ~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~k 158 (262)
++|++|+ ++| +|++++.++.++.+ ++.++ .++++..+|||++||+.+++||.++++.++++
T Consensus 194 ~~GakVv-v~D----------~~~~~l~~~a~~~g-------a~~v~-~~~ll~~~~DIvip~a~~~~I~~~~~~~lg~~ 254 (364)
T 1leh_A 194 TEGAKLV-VTD----------VNKAAVSAAVAEEG-------ADAVA-PNAIYGVTCDIFAPCALGAVLNDFTIPQLKAK 254 (364)
T ss_dssp HTTCEEE-EEC----------SCHHHHHHHHHHHC-------CEECC-GGGTTTCCCSEEEECSCSCCBSTTHHHHCCCS
T ss_pred HCCCEEE-EEc----------CCHHHHHHHHHHcC-------CEEEC-hHHHhccCCcEeeccchHHHhCHHHHHhCCCc
Confidence 9999999 999 68888887776642 34455 66788889999999999999999999999999
Q ss_pred EEEecCCCCCC-HHHHHHHHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14499 159 IILEGANGPTT-TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTK 237 (262)
Q Consensus 159 iIve~AN~p~t-~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~ 237 (262)
+|+|+||+|++ +++.++|+++||.++||+++|+|||++||+|| +.|++|+|.++++++| +++++|++.|+++
T Consensus 255 iV~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~~NaGGv~~s~~E~------~~~~~e~v~~~l~~i~-~~~~~i~~~~~~~ 327 (364)
T 1leh_A 255 VIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVADEL------YGYNRTRAMKRVDGIY-DSIEKIFAISKRD 327 (364)
T ss_dssp EECCSCSCCBSSHHHHHHHHHHTCEECCHHHHTTHHHHHHHHGG------GCCCHHHHHHHHTHHH-HHHHHHHHHHHHT
T ss_pred EEEeCCCCCcccHHHHHHHHhCCCEEecceeecCCceEEEEEee------cCCCHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 99999999997 59999999999999999999999999999999 4699999999999998 7799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 238 KVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 238 ~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
++++|+|||.+|++||.++++.||+
T Consensus 328 ~~~~~~aA~~~a~~ri~~a~~~~~~ 352 (364)
T 1leh_A 328 GVPSYVAADRMAEERIAKVAKARSQ 352 (364)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999985
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=91.06 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
++..+|+|+|+|+||+.+++.|.+ .+.++++|+|++...++++ +|+++..+.+++.+.+..+ .++ ..
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~-idl~~~~~~~~~~g~~~~~----~~d-~~ 75 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRN-LDISSIISNKEKTGRISDR----AFS-GP 75 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSS-CCHHHHHHHHHHHSCSCSS----BCC-SG
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccc-cCHHHHHHHhhhcCCCCcc----cCC-HH
Confidence 356799999999999999999977 3689999999999999998 9998877766655544321 123 45
Q ss_pred ccc-ccCceEEeeCCccCcccccc----hhcc--CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhh---H
Q psy14499 129 EFW-SIPCDILIPAAIEDQITINN----ANNV--TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGV---I 195 (262)
Q Consensus 129 ~il-~~~~DIlipaa~~~~it~e~----a~~~--~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGv---i 195 (262)
+++ +.++||+++|++.+ .+.++ +... ..|.|+-+...+++ ++..+.-+++|+.+. |-++.|+- +
T Consensus 76 e~l~~~~iDvVVe~T~~~-~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~--~Ea~vg~giPii 152 (325)
T 3ing_A 76 EDLMGEAADLLVDCTPAS-RDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIR--YEATVAGGVPLF 152 (325)
T ss_dssp GGGTTSCCSEEEECCCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE--CGGGSSTTSCCH
T ss_pred HHhcCCCCCEEEECCCCc-cccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEE--EEeeecccCHHH
Confidence 555 56899999999876 22222 2222 56677766555654 333444577898776 55655543 4
Q ss_pred HHHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 196 VSYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 196 ~s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
..-.+++.... + +.-+-.-++.++++ ...+.++++.|++.|.
T Consensus 153 ~~l~~~l~g~~I~~i~Gi~nGT~nyil~~m~~--g~~f~~~l~~Aq~~Gy 200 (325)
T 3ing_A 153 SVLDYSILPSKVKRFRGIVSSTINYVIRNMAN--GRSLRDVVDDAIKKGI 200 (325)
T ss_dssp HHHHHTCTTCCEEEEEEECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTC
T ss_pred HHHHHHhhCCCeeEEEEEEEeeeeEEeecccC--CCCHHHHHHHHHHcCC
Confidence 44444432100 0 00122234555533 3478899999999886
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.7e-08 Score=90.51 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=96.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCC---CCHHHHHHHH
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNG---FNIPKLQKYV 109 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~G---lD~~~l~~~~ 109 (262)
-...|+--+..++.++++..|+++++.||+|+|.|.+|.+++++|...|++-+-++|++|.++.... |+..+ +..
T Consensus 167 DiqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k--~~~ 244 (388)
T 1vl6_A 167 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYH--LEI 244 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHH--HHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHH--HHH
Confidence 3468888899999999998899999999999999999999999999999954449999999997542 65432 322
Q ss_pred HhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCC
Q psy14499 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPT 168 (262)
Q Consensus 110 ~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~ 168 (262)
.+... .+.. ..+..+.+ .++||||-++.++++|+|.++++. -.+|++-+| |+
T Consensus 245 A~~~~--~~~~---~~~L~eav-~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSN-Pt 297 (388)
T 1vl6_A 245 ARITN--PERL---SGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALAN-PV 297 (388)
T ss_dssp HHTSC--TTCC---CSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS-SS
T ss_pred HHhhh--ccCc---hhhHHHHH-ccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCC-CC
Confidence 22111 1101 11123444 368999999999999999999995 339999999 54
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=98.68 E-value=6e-08 Score=90.56 Aligned_cols=127 Identities=15% Similarity=0.099 Sum_probs=95.7
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCC--CCCHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPN--GFNIPKLQKYV 109 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~--GlD~~~l~~~~ 109 (262)
+-...|+--+..++.++++..|++++..||+|.|.|.+|.+++++|...|++-|-++|++|.+++.. .|+..+ +..
T Consensus 162 DDiqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k--~~f 239 (398)
T 2a9f_A 162 DDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHH--LDI 239 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC-----CH
T ss_pred chhhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHH--HHH
Confidence 4556899999999999999889999999999999999999999999999994444999999998753 455432 211
Q ss_pred HhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCC
Q psy14499 110 TFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANG 166 (262)
Q Consensus 110 ~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~ 166 (262)
.+... .+.. ..+ ..+.+ .++||||-++.++++|+|.++++. -.||+.-+|-
T Consensus 240 a~~~~--~~~~--~~~-L~eav-~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNP 291 (398)
T 2a9f_A 240 AKVTN--REFK--SGT-LEDAL-EGADIFIGVSAPGVLKAEWISKMAARPVIFAMANP 291 (398)
T ss_dssp HHHHS--CTTC--CCS-CSHHH-HTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSS
T ss_pred hhccC--cccc--hhh-HHHHh-ccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCC
Confidence 11111 0101 111 34455 368999999999999999999995 4499999995
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-06 Score=72.41 Aligned_cols=136 Identities=11% Similarity=0.019 Sum_probs=90.9
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec
Q psy14499 45 GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI 124 (262)
Q Consensus 45 ~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~ 124 (262)
+..++++.+.++++ +++|+|+|.+|+.+++.|.+.|++|+ ++| -+.++..++.++.+. . +
T Consensus 104 ~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~-v~~----------r~~~~~~~l~~~~~~-------~-~ 163 (263)
T 2d5c_A 104 FLEALKAGGIPLKG-PALVLGAGGAGRAVAFALREAGLEVW-VWN----------RTPQRALALAEEFGL-------R-A 163 (263)
T ss_dssp HHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHHHTC-------E-E
T ss_pred HHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHhcc-------c-h
Confidence 34445566788999 99999999999999999999999654 877 456665555544331 1 2
Q ss_pred CCCccccccCceEEeeCCccCccc--ccc--hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHHH
Q psy14499 125 NDSKEFWSIPCDILIPAAIEDQIT--INN--ANNV-TAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 125 ~~~~~il~~~~DIlipaa~~~~it--~e~--a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~ 199 (262)
++..++ .++||+|-|++..... ... ...+ ..++|++-+.+|...+..+.++++|+.++|..-.-.+..+.++.
T Consensus 164 ~~~~~~--~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v~g~~mlv~q~~~a~~ 241 (263)
T 2d5c_A 164 VPLEKA--REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAFR 241 (263)
T ss_dssp CCGGGG--GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHH
T ss_pred hhHhhc--cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEECcHHHHHHHHHHHHH
Confidence 213344 6899999999866321 111 2334 35588898887763245667788999988765444444455555
Q ss_pred HHH
Q psy14499 200 EWV 202 (262)
Q Consensus 200 E~~ 202 (262)
.|.
T Consensus 242 ~w~ 244 (263)
T 2d5c_A 242 LWT 244 (263)
T ss_dssp HHH
T ss_pred HHh
Confidence 564
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.5e-07 Score=84.12 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=78.7
Q ss_pred HHHHHHHHHHH-HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 39 RGVFIIGSKIA-SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 39 ~Gv~~~~~~~~-~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
||+..++...+ +..+..+.|++|+|+|+|+||+.+|+.|..+|++|+ ++| .|+....+....
T Consensus 227 yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Vi-v~d----------~dp~~a~~A~~~------ 289 (464)
T 3n58_A 227 YGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVK-VTE----------VDPICALQAAMD------ 289 (464)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHT------
T ss_pred hcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEE-EEe----------CCcchhhHHHhc------
Confidence 44444443333 345889999999999999999999999999999988 777 566554333321
Q ss_pred CCCceecCCCccccccCceEEeeCCc-cCcccccchhccC-ceEEEecCCCCC
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANGPT 168 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~-~kiIve~AN~p~ 168 (262)
+.+..+ .++++ ..+||++.|+. .++|+.+....++ .-+|+..+.+..
T Consensus 290 --G~~vv~-LeElL-~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 290 --GFEVVT-LDDAA-STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --TCEECC-HHHHG-GGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --Cceecc-HHHHH-hhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence 223333 55666 48999999986 4688999888885 457778777664
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-06 Score=82.67 Aligned_cols=110 Identities=11% Similarity=0.124 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
..|+.+++.++.. ..+..+.|++|+|+|+|++|+.+|+.|..+|++|+ ++| .|+.........
T Consensus 200 yGt~~s~~~gi~r---at~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Vi-v~D----------~dp~ra~~A~~~--- 262 (435)
T 3gvp_A 200 YCCRESILDGLKR---TTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVY-VTE----------IDPICALQACMD--- 262 (435)
T ss_dssp HHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT---
T ss_pred hhhHHHHHHHHHH---hhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEe----------CChhhhHHHHHc---
Confidence 3455555555443 34788999999999999999999999999999987 778 566544433322
Q ss_pred ccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccC-ceEEEecCCCCC
Q psy14499 115 IKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANGPT 168 (262)
Q Consensus 115 ~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~-~kiIve~AN~p~ 168 (262)
+.+..+ .++++ ..+||++.|+. .++++.+....++ ..+|+..++++.
T Consensus 263 -----G~~v~~-Leeal-~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 263 -----GFRLVK-LNEVI-RQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp -----TCEECC-HHHHT-TTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred -----CCEecc-HHHHH-hcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence 122233 44555 48999999975 5889988888885 558888888875
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=82.08 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
|+.+++.++ .+..+..+.|++|+|+|+|++|+.+|+.|..+|++|+ ++| .|+.........
T Consensus 193 t~~slldgi---~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Vi-v~D----------~~p~~a~~A~~~----- 253 (436)
T 3h9u_A 193 CRESLVDGI---KRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVV-VTE----------VDPINALQAAME----- 253 (436)
T ss_dssp HHHHHHHHH---HHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT-----
T ss_pred chHHHHHHH---HHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEC----------CChhhhHHHHHh-----
Confidence 444444443 3345889999999999999999999999999999987 777 466554443332
Q ss_pred CCCCceecCCCccccccCceEEeeCCcc-CcccccchhccC-ceEEEecCCCCC--CHHH
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVT-AKIILEGANGPT--TTEA 172 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~-~kiIve~AN~p~--t~ea 172 (262)
+.+..+ .++++ ..+||++.++.. ++++.+....++ .-+|+..++++. .+++
T Consensus 254 ---G~~~~s-L~eal-~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~ 308 (436)
T 3h9u_A 254 ---GYQVLL-VEDVV-EEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAW 308 (436)
T ss_dssp ---TCEECC-HHHHT-TTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHH
T ss_pred ---CCeecC-HHHHH-hhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHH
Confidence 122233 55666 489999988764 889999888885 558889998874 4443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-06 Score=75.58 Aligned_cols=117 Identities=21% Similarity=0.267 Sum_probs=82.2
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec--CCC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI--NDS 127 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~--~~~ 127 (262)
+..+.++.+++|.|+|+|++|+.+++.|..+|++|+ +.| -+++++....+ .+ .+.+ ++.
T Consensus 149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~d----------~~~~~~~~~~~-~g-------~~~~~~~~l 209 (300)
T 2rir_A 149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVK-VGA----------RSSAHLARITE-MG-------LVPFHTDEL 209 (300)
T ss_dssp HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SSHHHHHHHHH-TT-------CEEEEGGGH
T ss_pred HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH-CC-------CeEEchhhH
Confidence 445778999999999999999999999999999987 666 24444433332 11 1211 113
Q ss_pred ccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEe--ccc
Q psy14499 128 KEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPTTTEADDILRDKGIILA--PDV 187 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~i--PD~ 187 (262)
++++ .++|+++.|.+.+.++.+....++ ..+++.-+-+|..-+. +..+++|+.++ |..
T Consensus 210 ~~~l-~~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~ 270 (300)
T 2rir_A 210 KEHV-KDIDICINTIPSMILNQTVLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGL 270 (300)
T ss_dssp HHHS-TTCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCH
T ss_pred HHHh-hCCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCC
Confidence 3444 489999999999999887776664 5588888877753223 45577898875 544
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.47 E-value=8.6e-07 Score=81.02 Aligned_cols=169 Identities=22% Similarity=0.269 Sum_probs=103.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcc
Q psy14499 59 SKISIQGFGNVGSVAANLFFK---------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKE 129 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~---------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 129 (262)
.||+|+|+|+||+.+++.|.+ .+.++++|+|++....++ +|+.+....+...+.+.. .. +.++
T Consensus 3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~--id~~~~~~~~~~~~~~~~-----~~-d~~~ 74 (327)
T 3do5_A 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD--FSLVEALRMKRETGMLRD-----DA-KAIE 74 (327)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS--CCHHHHHHHHHHHSSCSB-----CC-CHHH
T ss_pred EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc--cCHHHHHhhhccCccccC-----CC-CHHH
Confidence 589999999999999999977 478999999999988887 887765544332222110 01 2455
Q ss_pred cc-ccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhh---HH
Q psy14499 130 FW-SIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGV---IV 196 (262)
Q Consensus 130 il-~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGv---i~ 196 (262)
++ +.+.|++++|++.+.-+.+ +..+ ..|.|+-....|++ ++..+..+++|+.+. |-++.|+- +.
T Consensus 75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~--~ea~v~~g~Pii~ 151 (327)
T 3do5_A 75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLM--YEATVGGAMPVVK 151 (327)
T ss_dssp HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEE--CGGGSSTTSCCHH
T ss_pred HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEE--EEEEeeecCHHHH
Confidence 66 4689999999987654333 3222 45666666666765 344455578899776 55555443 33
Q ss_pred HHHHHHhhhc-----CC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 197 SYFEWVQNLS-----NL-LWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 197 s~~E~~~~~~-----~~-~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
.-.+++.... +. .-+-.-++.++++. ...+.+++..|++.|.
T Consensus 152 ~l~~~l~~~~I~~I~GIlnGT~nyilt~m~~~-g~~f~~~l~~Aq~~Gy 199 (327)
T 3do5_A 152 LAKRYLALCEIESVKGIFNGTCNYILSRMEEE-RLPYEHILKEAQELGY 199 (327)
T ss_dssp HHHTTTTTSCEEEEEEECCHHHHHHHHHHHHH-CCCHHHHHHHHHHTTS
T ss_pred HHHHHhhCCCccEEEEEECCCcCcchhhcCcC-CcCHHHHHHHHHHcCC
Confidence 3333332100 00 00112244445322 3568899999999875
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=77.06 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=80.8
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec--C
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI--N 125 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~--~ 125 (262)
++...+.++.+++|.|+|+|++|+.+++.|..+|++|+ +.|+ +++++....+ .+ .+.+ +
T Consensus 145 ~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~-~~dr----------~~~~~~~~~~-~g-------~~~~~~~ 205 (293)
T 3d4o_A 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVK-VGAR----------ESDLLARIAE-MG-------MEPFHIS 205 (293)
T ss_dssp HHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES----------SHHHHHHHHH-TT-------SEEEEGG
T ss_pred HHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEEC----------CHHHHHHHHH-CC-------CeecChh
Confidence 34556789999999999999999999999999999887 6663 3444333322 22 2221 1
Q ss_pred CCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
+.++++ .++|+++.|.+.+.++.+....++ ..+++.-+-+|..-+. +..+++|+.++
T Consensus 206 ~l~~~l-~~aDvVi~~~p~~~i~~~~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~ 263 (293)
T 3d4o_A 206 KAAQEL-RDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKAL 263 (293)
T ss_dssp GHHHHT-TTCSEEEECCSSCCBCHHHHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEE
T ss_pred hHHHHh-cCCCEEEECCChHHhCHHHHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEE
Confidence 123344 489999999998888887777664 4588888876652222 45577898775
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=79.98 Aligned_cols=127 Identities=12% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
...+++-.++..+..+.++++.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.| +..- . ...
T Consensus 91 ~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~-~~d------------~~~~-~--~~~ 154 (380)
T 2o4c_A 91 NARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVL-VCD------------PPRQ-A--REP 154 (380)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC------------HHHH-H--HST
T ss_pred ChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEE-EEc------------CChh-h--hcc
Confidence 35577888888888888889999999999999999999999999999999987 445 2210 0 111
Q ss_pred CCccCCCCceecCCCccccccCceEEeeCCcc---------CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCC
Q psy14499 113 RSIKDFNEGEKINDSKEFWSIPCDILIPAAIE---------DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKG 180 (262)
Q Consensus 113 g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~---------~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rg 180 (262)
+....+ .++++. +|||++.|.+. ++++.+....++ ..+++..+.+++ . .+..+.|++.+
T Consensus 155 -------g~~~~~-l~ell~-~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~ 225 (380)
T 2o4c_A 155 -------DGEFVS-LERLLA-EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225 (380)
T ss_dssp -------TSCCCC-HHHHHH-HCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTC
T ss_pred -------CcccCC-HHHHHH-hCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCC
Confidence 111122 455663 89999988743 456666667775 558999999886 4 33467788877
Q ss_pred CeEe
Q psy14499 181 IILA 184 (262)
Q Consensus 181 i~~i 184 (262)
|.-.
T Consensus 226 i~~A 229 (380)
T 2o4c_A 226 DLEV 229 (380)
T ss_dssp CEEE
T ss_pred CceE
Confidence 6644
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=71.20 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++.|+..+++ ..+.++++++|+|+|.|.+|+.+++.|.+.|++|+ ++| -+.++..++.++.+
T Consensus 112 d~~G~~~~l~----~~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~-v~~----------r~~~~~~~l~~~~g--- 173 (275)
T 2hk9_A 112 DWIGFLKSLK----SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVF-LWN----------RTKEKAIKLAQKFP--- 173 (275)
T ss_dssp HHHHHHHHHH----HHCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEE-EEC----------SSHHHHHHHTTTSC---
T ss_pred CHHHHHHHHH----HhCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEE-EEE----------CCHHHHHHHHHHcC---
Confidence 5667766654 45778899999999999999999999999999655 777 46666655544322
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCccc--ccch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEeccccccc
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQIT--INNA--NNV-TAKIILEGANGPTTTEADDILRDKGIILAPDVITNA 191 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it--~e~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~ 191 (262)
.+..++..+.+ .++|++|-|++..... .+.. ..+ ..++|++-+. ..|+- .+..+++|+.++|..-.-.
T Consensus 174 ----~~~~~~~~~~~-~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~-~~t~l-l~~a~~~g~~~v~g~~mlv 246 (275)
T 2hk9_A 174 ----LEVVNSPEEVI-DKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY-KETKL-LKKAKEKGAKLLDGLPMLL 246 (275)
T ss_dssp ----EEECSCGGGTG-GGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS-SCCHH-HHHHHHTTCEEECSHHHHH
T ss_pred ----CeeehhHHhhh-cCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC-ChHHH-HHHHHHCcCEEECCHHHHH
Confidence 22222133444 4899999999866431 1122 223 3568889888 44543 3455779999988765555
Q ss_pred hhhHHHHHHHHh
Q psy14499 192 GGVIVSYFEWVQ 203 (262)
Q Consensus 192 GGvi~s~~E~~~ 203 (262)
+..+.++..|..
T Consensus 247 ~q~~~a~~~w~g 258 (275)
T 2hk9_A 247 WQGIEAFKIWNG 258 (275)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
Confidence 555566666653
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=81.95 Aligned_cols=130 Identities=20% Similarity=0.173 Sum_probs=96.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHH---
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKL--- 105 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l--- 105 (262)
|-.+.||--+..++.+++|..|+++++.||++.|.|..|.+++++|.+.|. ++. ++|++|.|++... |+...
T Consensus 193 DD~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~-l~D~~Gli~~~R~-~l~~~~~~ 270 (487)
T 3nv9_A 193 DDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIV-MFDSKGSLHNGRE-DIKKDTRF 270 (487)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEETTEECCTTCH-HHHHCGGG
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEE-EEeccccccCCcc-hhhhhccc
Confidence 567799999999999999999999999999999999999999999999998 555 9999999997541 12110
Q ss_pred ---HHHHHhcCCccCCCCceecCCCccccccCceEEeeCC--ccCcccccchhccC-ceEEEecCCCC--CCHH
Q psy14499 106 ---QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAA--IEDQITINNANNVT-AKIILEGANGP--TTTE 171 (262)
Q Consensus 106 ---~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa--~~~~it~e~a~~~~-~kiIve~AN~p--~t~e 171 (262)
.++.+... +. ...+..+++. .+||||-+| .++.+|+|.++++. -.||+.-+|-. ++||
T Consensus 271 ~~k~~~A~~~n-----~~--~~~~L~eav~-~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe 336 (487)
T 3nv9_A 271 YRKWEICETTN-----PS--KFGSIAEACV-GADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPY 336 (487)
T ss_dssp HHHHHHHHHSC-----TT--CCCSHHHHHT-TCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHH
T ss_pred HHHHHHHHhcc-----cc--cCCCHHHHHh-cCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHH
Confidence 11111110 00 0111334443 569999999 45999999999994 44999999964 2554
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.8e-06 Score=76.20 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.| +...+.+...+. +.+..++.++++
T Consensus 159 ~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~-~~d-------r~~~~~~~~~~~-----------g~~~~~~l~ell- 218 (351)
T 3jtm_A 159 AYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLL-YHD-------RLQMAPELEKET-----------GAKFVEDLNEML- 218 (351)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEE-EEC-------SSCCCHHHHHHH-----------CCEECSCHHHHG-
T ss_pred cccccCCEEeEEEeCHHHHHHHHHHHHCCCEEE-EeC-------CCccCHHHHHhC-----------CCeEcCCHHHHH-
Confidence 457999999999999999999999999999977 444 333344332221 122232245666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
..|||++-|.+. ++++.+....++ ..+++..+.+++ . ....+.|++..|.
T Consensus 219 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 276 (351)
T 3jtm_A 219 PKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG 276 (351)
T ss_dssp GGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCcc
Confidence 489999988764 466777777774 669999999987 3 4446888887765
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-05 Score=67.08 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
.+.|+..+++ ..|.++++++++|+|.|.+|+.+++.|.+.|++|+ |+| .+.+++.++.++.+..
T Consensus 102 D~~G~~~~L~----~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~-v~~----------R~~~~~~~la~~~~~~- 165 (271)
T 1nyt_A 102 DGVGLLSDLE----RLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVT-ITN----------RTVSRAEELAKLFAHT- 165 (271)
T ss_dssp HHHHHHHHHH----HHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHHTGGG-
T ss_pred CHHHHHHHHH----hcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEE-EEE----------CCHHHHHHHHHHhhcc-
Confidence 4777776654 45778999999999999999999999999998877 777 4666666665443211
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCcccc-cch--hcc-CceEEEecCCCCC-CHHHHHHHHHCCCe-Eec
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITI-NNA--NNV-TAKIILEGANGPT-TTEADDILRDKGII-LAP 185 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~-e~a--~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~-~iP 185 (262)
......+ .+++.+.++||+|-|++...... .+. ..+ ...+|++-...|. |+.. +..+++|.. +++
T Consensus 166 --~~~~~~~-~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t~~~-~~a~~~G~~~~~~ 236 (271)
T 1nyt_A 166 --GSIQALS-MDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFL-AWCEQRGSKRNAD 236 (271)
T ss_dssp --SSEEECC-SGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHH-HHHHHTTCCEEEC
T ss_pred --CCeeEec-HHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCCHHH-HHHHHcCCCeecC
Confidence 0111111 22221147999999987543210 001 112 3468999988886 5544 556889987 553
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.6e-05 Score=69.97 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhC-CCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 38 GRGVFIIGSKIASKIN-LNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g-~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
+.|+..++ +..+ .++++++++|+|.|.+|+.++..|.+.|+ +|+ |++ -+.+++.++.++.+..
T Consensus 124 ~~G~~~~l----~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~-v~n----------R~~~ka~~la~~~~~~ 188 (297)
T 2egg_A 124 GLGYVQAL----EEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERID-MAN----------RTVEKAERLVREGDER 188 (297)
T ss_dssp HHHHHHHH----HHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEE-EEC----------SSHHHHHHHHHHSCSS
T ss_pred HHHHHHHH----HHhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEE-EEe----------CCHHHHHHHHHHhhhc
Confidence 45555555 4456 78899999999999999999999999998 665 887 4677766666553321
Q ss_pred cCCCCceecC--CCccccccCceEEeeCCccCcccc---cch--hcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEecc
Q psy14499 116 KDFNEGEKIN--DSKEFWSIPCDILIPAAIEDQITI---NNA--NNV-TAKIILEGANGPT-TTEADDILRDKGIILAPD 186 (262)
Q Consensus 116 ~~~~~~~~~~--~~~~il~~~~DIlipaa~~~~it~---e~a--~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~iPD 186 (262)
++ ...+ +..+.+ .++||+|-|++...... -+. ..+ ...+|++-.-+|. |+ ..+..+++|+.+++.
T Consensus 189 --~~--~~~~~~~~~~~~-~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-ll~~A~~~G~~~v~G 262 (297)
T 2egg_A 189 --RS--AYFSLAEAETRL-AEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETK-WLKEAKARGARVQNG 262 (297)
T ss_dssp --SC--CEECHHHHHHTG-GGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSCH-HHHHHHHTTCEEECS
T ss_pred --cC--ceeeHHHHHhhh-ccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCCH-HHHHHHHCcCEEECC
Confidence 00 1111 011222 47999999997654211 011 123 3568999998886 54 556678899988766
Q ss_pred c
Q psy14499 187 V 187 (262)
Q Consensus 187 ~ 187 (262)
.
T Consensus 263 l 263 (297)
T 2egg_A 263 V 263 (297)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-06 Score=76.95 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=86.7
Q ss_pred CCChhHHHHHHHHHHHHHH--------------------hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE-EEEEeCCC
Q psy14499 33 RQKATGRGVFIIGSKIASK--------------------INLNIINSKISIQGFGNVGSVAANLFFKAGAK-IVAIQDDK 91 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~--------------------~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D~~ 91 (262)
...+++-.++..+..+.|+ .+.++.|++|.|+|+|++|+.+|+.|..+|++ |+ +.|.
T Consensus 119 ~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~-~~d~- 196 (364)
T 2j6i_A 119 NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-YYDY- 196 (364)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEE-EECS-
T ss_pred CcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE-EECC-
Confidence 3456666666666555442 25579999999999999999999999999997 87 4452
Q ss_pred ceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCcc-----CcccccchhccC-ceEEEecCC
Q psy14499 92 TTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-----DQITINNANNVT-AKIILEGAN 165 (262)
Q Consensus 92 G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN 165 (262)
.....+.. .+.| ....++.++++ .++||++.|.+. ++++.+....++ ..+++..+.
T Consensus 197 ------~~~~~~~~----~~~g-------~~~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~ar 258 (364)
T 2j6i_A 197 ------QALPKDAE----EKVG-------ARRVENIEELV-AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTAR 258 (364)
T ss_dssp ------SCCCHHHH----HHTT-------EEECSSHHHHH-HTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred ------CccchhHH----HhcC-------cEecCCHHHHH-hcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCC
Confidence 22223221 1111 22222244566 489999999876 456666666664 558888888
Q ss_pred CCC-C-HHHHHHHHHCCCe
Q psy14499 166 GPT-T-TEADDILRDKGII 182 (262)
Q Consensus 166 ~p~-t-~ea~~~l~~rgi~ 182 (262)
+++ . .+..+.|++.+|.
T Consensus 259 G~~vd~~aL~~aL~~g~i~ 277 (364)
T 2j6i_A 259 GAICVAEDVAAALESGQLR 277 (364)
T ss_dssp GGGBCHHHHHHHHHHTSEE
T ss_pred CchhCHHHHHHHHHcCCCc
Confidence 876 4 4456888887765
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-05 Score=68.31 Aligned_cols=126 Identities=11% Similarity=0.096 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++|...++ +..+.++++++++|.|.|.+|+.++..|.+.|+ +|+ |++ -+.++..++.++.+..
T Consensus 110 ~~G~~~~L----~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~-v~~----------R~~~~a~~la~~~~~~- 173 (281)
T 3o8q_A 110 GEGLVQDL----LAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASIT-VTN----------RTFAKAEQLAELVAAY- 173 (281)
T ss_dssp HHHHHHHH----HHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEE-EEE----------SSHHHHHHHHHHHGGG-
T ss_pred HHHHHHHH----HHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEE-EEE----------CCHHHHHHHHHHhhcc-
Confidence 56666655 456889999999999999999999999999997 655 777 3566666655443211
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCccccc---chhcc-CceEEEecCCCCC-CHHHHHHHHHCCCe-Ee
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN---NANNV-TAKIILEGANGPT-TTEADDILRDKGII-LA 184 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e---~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~-~i 184 (262)
......+ .+++. .++||+|-|++....... +...+ +..+|++-.-+|. |+-. +..+++|+. ++
T Consensus 174 --~~~~~~~-~~~l~-~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~~~~ 242 (281)
T 3o8q_A 174 --GEVKAQA-FEQLK-QSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYTVFN-QWARQHGCAQAI 242 (281)
T ss_dssp --SCEEEEE-GGGCC-SCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCCHHH-HHHHHTTCSEEE
T ss_pred --CCeeEee-HHHhc-CCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccCHHH-HHHHHCCCCEEE
Confidence 0112222 33333 689999999876543221 11223 3568999998886 6654 566899986 55
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=74.00 Aligned_cols=174 Identities=20% Similarity=0.167 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 34 QKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
..+++--++..+..+.+..|.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.| +.. . ... .
T Consensus 95 ~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~-~~d------------~~~--~-~~~-~ 157 (381)
T 3oet_A 95 AIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTL-LCD------------PPR--A-ARG-D 157 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC------------HHH--H-HTT-C
T ss_pred cchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EEC------------CCh--H-Hhc-c
Confidence 4456666666667777888999999999999999999999999999999988 444 221 0 011 0
Q ss_pred CccCCCCceecCCCccccccCceEEeeCCcc---------CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCC
Q psy14499 114 SIKDFNEGEKINDSKEFWSIPCDILIPAAIE---------DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGI 181 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~il~~~~DIlipaa~~---------~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi 181 (262)
.....+ .++++ .+|||++-+.+. ++++.+....++ ..+++..+-+++ . .+..+.|++.++
T Consensus 158 ------~~~~~s-l~ell-~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i 229 (381)
T 3oet_A 158 ------EGDFRT-LDELV-QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229 (381)
T ss_dssp ------CSCBCC-HHHHH-HHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCC
T ss_pred ------CcccCC-HHHHH-hhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCC
Confidence 111122 45566 489999987753 456666666664 569999999986 3 444677888776
Q ss_pred eE-eccccccchhhHHHHHHHH-hhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14499 182 IL-APDVITNAGGVIVSYFEWV-QNLSNLLWTEQEINLRLNNIICNAFDAIWE 232 (262)
Q Consensus 182 ~~-iPD~~aN~GGvi~s~~E~~-~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~ 232 (262)
.- .=|+..+=--.-...++.. --.+|..|...+...++...+.+++.+.+.
T Consensus 230 ~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~ 282 (381)
T 3oet_A 230 LSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVFEAYSAFIG 282 (381)
T ss_dssp EEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeeccccCCCCcchhhhCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 53 3344333221111211110 013466665445444444444455555443
|
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.1e-07 Score=85.59 Aligned_cols=124 Identities=17% Similarity=0.144 Sum_probs=96.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC-------EEEEEeCCCceeeCC-CC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA-------KIVAIQDDKTTIYNP-NG 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~-------~vv~V~D~~G~i~~~-~G 99 (262)
|-.+.||--+..++.++++..|+++++.||++.|.|..|.++|++|.. .|. ++. ++|++|.|++. ++
T Consensus 256 DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~-~~D~~Gli~~~r~~ 334 (555)
T 1gq2_A 256 DDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIW-MVDSKGLIVKGRAS 334 (555)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEE-EEETTEECBTTCSS
T ss_pred CccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEE-EEECCCeeeCCCCC
Confidence 567799999999999999999999999999999999999999999987 674 455 99999999985 34
Q ss_pred CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCC
Q psy14499 100 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANG 166 (262)
Q Consensus 100 lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~ 166 (262)
|+..+ +...+.. . ...+..+++ .+++||||-+|. ++++|+|.+++| .-.||+.-+|-
T Consensus 335 l~~~k--~~~A~~~------~--~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 397 (555)
T 1gq2_A 335 LTPEK--EHFAHEH------C--EMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNP 397 (555)
T ss_dssp CCTTG--GGGCBSC------C--CCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred chHHH--HHHHhhc------C--CCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 55432 1111110 0 011133444 358999999995 799999999999 35699999995
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=85.09 Aligned_cols=124 Identities=13% Similarity=0.049 Sum_probs=95.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC-------EEEEEeCCCceeeCC-CC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA-------KIVAIQDDKTTIYNP-NG 99 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~-------~vv~V~D~~G~i~~~-~G 99 (262)
|-.+.||--+..++.++++..|+++++.||++.|.|..|.++|++|.. .|. ++. ++|++|.|++. ++
T Consensus 294 DDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~vD~~Gli~~~r~~ 372 (605)
T 1o0s_A 294 DDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNRKE 372 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTCSS
T ss_pred cccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEE-EEECCCceeCCCCC
Confidence 345689999999999999999999999999999999999999999988 785 455 99999999985 34
Q ss_pred CCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCC
Q psy14499 100 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANG 166 (262)
Q Consensus 100 lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~ 166 (262)
|+..+ +. +..- .....+..+++ .+++||||-+|. ++++|+|.+++| .-.||+.-+|-
T Consensus 373 l~~~k-----~~---~A~~--~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 435 (605)
T 1o0s_A 373 MNPRH-----VQ---FAKD--MPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNP 435 (605)
T ss_dssp CCGGG-----TT---TCBS--SCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred chHHH-----HH---HHhh--cCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 55432 11 1100 00111133444 358999999995 799999999999 35699999995
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-05 Score=68.18 Aligned_cols=176 Identities=12% Similarity=0.138 Sum_probs=105.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.+++.++|.|+|+|++|+.+++.|.+.|++|+ +.| .+.+++.++.+. | ....++..+++ .
T Consensus 5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~-~~d----------r~~~~~~~~~~~-g-------~~~~~~~~e~~-~ 64 (306)
T 3l6d_A 5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVA-IWN----------RSPGKAAALVAA-G-------AHLCESVKAAL-S 64 (306)
T ss_dssp CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHH-T-------CEECSSHHHHH-H
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHC-C-------CeecCCHHHHH-h
Confidence 34567899999999999999999999999987 667 577777666554 2 22222234444 4
Q ss_pred CceEEeeCCccCcccccc-----hhc-cCceEEEecCCCCCC--HHHHHHHHHCCCeEecccccc------chhh-----
Q psy14499 134 PCDILIPAAIEDQITINN-----ANN-VTAKIILEGANGPTT--TEADDILRDKGIILAPDVITN------AGGV----- 194 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~-----a~~-~~~kiIve~AN~p~t--~ea~~~l~~rgi~~iPD~~aN------~GGv----- 194 (262)
+||++|.|.+.+....+. ... .+.++|+...+.... .+..+.+.++|+.++.-.+.. .++.
T Consensus 65 ~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~g 144 (306)
T 3l6d_A 65 ASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHT 144 (306)
T ss_dssp HSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEE
T ss_pred cCCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEc
Confidence 799999998754322221 122 256688888777553 445577888999988543321 1111
Q ss_pred -HHHHHHH----Hhhh-cCCCCC--HHH-----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 195 -IVSYFEW----VQNL-SNLLWT--EQE-----INLRLNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 195 -i~s~~E~----~~~~-~~~~~~--~~~-----v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
--..++. ++.. ....+- -+. ....+...+...+.+.+..+++.|+++.+....+.
T Consensus 145 g~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 212 (306)
T 3l6d_A 145 GDREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLLL 212 (306)
T ss_dssp ECHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0122232 2222 112223 221 11122222345667778889999999877665543
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.9e-05 Score=67.01 Aligned_cols=127 Identities=20% Similarity=0.194 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++|...+ +++..+.++++++++|.|.|.+|+.++..|.+.|+ +|+ |++ -+.++..++.++.+. .
T Consensus 103 ~~G~~~~---lL~~~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~-i~~----------R~~~~a~~la~~~~~-~ 167 (272)
T 3pwz_A 103 GIGLLRD---IEENLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELV-IAN----------RDMAKALALRNELDH-S 167 (272)
T ss_dssp HHHHHHH---HHTTSCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEE-EEC----------SCHHHHHHHHHHHCC-T
T ss_pred HHHHHHH---HHHHcCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEE-EEe----------CCHHHHHHHHHHhcc-C
Confidence 5666555 13556889999999999999999999999999997 655 777 366776666655432 0
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCccccc---chhcc-CceEEEecCCCCC-CHHHHHHHHHCCCe-Ee
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITIN---NANNV-TAKIILEGANGPT-TTEADDILRDKGII-LA 184 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e---~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~-~i 184 (262)
.....+ .+++-..++||+|-|++...-... +...+ +..+|++-.-+|. |+ ..+..+++|+. ++
T Consensus 168 ---~~~~~~-~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T~-ll~~A~~~G~~~~~ 236 (272)
T 3pwz_A 168 ---RLRISR-YEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLTP-FLRLAREQGQARLA 236 (272)
T ss_dssp ---TEEEEC-SGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSCH-HHHHHHHHSCCEEE
T ss_pred ---CeeEee-HHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCCH-HHHHHHHCCCCEEE
Confidence 122222 333333689999999876543211 11223 4568999999886 66 44455889986 55
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.6e-06 Score=76.15 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
+..+|+|+|+|+||+.+++.|.+. +.++++|+|++....++. +|++...+.... +.+..+... .. +.+
T Consensus 5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~-d~~ 80 (331)
T 3c8m_A 5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNER-IDIGKVISYKEK-GSLDSLEYE-SI-SAS 80 (331)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTT-CCHHHHHHHHHT-TCGGGCCSE-EC-CHH
T ss_pred cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcc-cChHHHhhhhcc-CCcccccCC-CC-CHH
Confidence 457999999999999999999764 489999999987777655 776665444332 222111000 01 245
Q ss_pred cccccCceEEeeCCccCcccccchhcc------CceEEEecCCCCCCHHH---HHHHHHCCCeEeccccccchh---hHH
Q psy14499 129 EFWSIPCDILIPAAIEDQITINNANNV------TAKIILEGANGPTTTEA---DDILRDKGIILAPDVITNAGG---VIV 196 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~e~a~~~------~~kiIve~AN~p~t~ea---~~~l~~rgi~~iPD~~aN~GG---vi~ 196 (262)
++++.+.||+++|++.+ .|.+.+..+ ..|.|+-....|+..++ .+.-+++|+.+. |-++.|+ ++.
T Consensus 81 ~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~--~ea~vg~giPii~ 157 (331)
T 3c8m_A 81 EALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIR--YEATVAGGVPLFS 157 (331)
T ss_dssp HHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEE--CGGGSSTTSCCHH
T ss_pred HHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEE--EEeecccccHHHH
Confidence 55566899999999876 334433322 45666665444554333 344467898776 3343333 344
Q ss_pred HHHHHHhhhcCCC-----CC--HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 197 SYFEWVQNLSNLL-----WT--EQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 197 s~~E~~~~~~~~~-----~~--~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
...+++.. ..+. ++ ..-+..++++ ...+.+++..|++.|.
T Consensus 158 ~l~~~l~g-~~I~~I~GI~nGT~nyil~~m~~--g~~f~~~l~eAq~~Gy 204 (331)
T 3c8m_A 158 FIDYSVLP-SRIKKFRGIVSLTINYFIRELAN--KREFDDVLSEATKLGI 204 (331)
T ss_dssp HHHHHSTT-CCCCEEEEECCHHHHHHHHHHHT--TCCHHHHHHHHHHHTS
T ss_pred HHHHHhhc-CcccEEEEEEeccceeEecchhc--CCCHHHHHHHHHHcCC
Confidence 45555532 1010 11 1223334432 2357778888888764
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-06 Score=84.99 Aligned_cols=126 Identities=17% Similarity=0.072 Sum_probs=95.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH----CCC-------EEEEEeCCCceeeCCC--
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK----AGA-------KIVAIQDDKTTIYNPN-- 98 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~----~g~-------~vv~V~D~~G~i~~~~-- 98 (262)
|-.+.||--+..++.+++|..|+++++.||++.|.|..|.++|++|.. .|. ++. ++|++|.|++..
T Consensus 258 DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~-~~D~~Gli~~~r~~ 336 (564)
T 1pj3_A 258 DDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGRKA 336 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTCSS
T ss_pred CCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEE-EEeCCCeEECCCcc
Confidence 445689999999999999999999999999999999999999999986 784 445 999999999853
Q ss_pred CCCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhccC----ceEEEecCCC
Q psy14499 99 GFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNVT----AKIILEGANG 166 (262)
Q Consensus 99 GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~~----~kiIve~AN~ 166 (262)
+|+..+ +...+.. +... ..+..+++ .+++||||-+|. ++++|+|.+++|. -.||+.-+|-
T Consensus 337 ~l~~~k--~~~A~~~-----~~~~-~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 402 (564)
T 1pj3_A 337 KIDSYQ--EPFTHSA-----PESI-PDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP 402 (564)
T ss_dssp CCCTTT--GGGCBCC-----CSSC-CSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred cchHHH--HHHHHhc-----Cccc-cCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 465432 1111100 0000 01133444 358999999995 7999999999984 5699999995
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.18 E-value=6e-05 Score=68.14 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=82.5
Q ss_pred CChhHHHHHHHHHHHHHH----------------hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCC
Q psy14499 34 QKATGRGVFIIGSKIASK----------------INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNP 97 (262)
Q Consensus 34 ~~aTg~Gv~~~~~~~~~~----------------~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~ 97 (262)
..+++--++..+..+.|+ .+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|++
T Consensus 102 ~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~------ 174 (313)
T 2ekl_A 102 TDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVL-AYDIL------ 174 (313)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEE-EECSS------
T ss_pred chHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCC------
Confidence 445665566666555554 2457999999999999999999999999999987 55531
Q ss_pred CCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH
Q psy14499 98 NGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT 170 (262)
Q Consensus 98 ~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ 170 (262)
.++. .. .+.| .+..+ .++++ .++|+++.|.+. ++++.+....++ ..+++.-+-+++ ..
T Consensus 175 ----~~~~-~~-~~~g-------~~~~~-l~ell-~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~ 239 (313)
T 2ekl_A 175 ----DIRE-KA-EKIN-------AKAVS-LEELL-KNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNG 239 (313)
T ss_dssp ----CCHH-HH-HHTT-------CEECC-HHHHH-HHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCH
T ss_pred ----cchh-HH-HhcC-------ceecC-HHHHH-hhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCH
Confidence 1121 11 1221 22222 45555 489999998764 345555555664 568888888875 43
Q ss_pred H-HHHHHHHCCC
Q psy14499 171 E-ADDILRDKGI 181 (262)
Q Consensus 171 e-a~~~l~~rgi 181 (262)
+ ..+.|++.+|
T Consensus 240 ~aL~~aL~~g~i 251 (313)
T 2ekl_A 240 KALLDYIKKGKV 251 (313)
T ss_dssp HHHHHHHHTTCE
T ss_pred HHHHHHHHcCCC
Confidence 3 4677777665
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=6.1e-05 Score=66.51 Aligned_cols=129 Identities=12% Similarity=0.091 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
+.|+..++ +..|.++++++++|.|.|.+|+.++..|.+.|.+|+ |++ -+.+++.++.++.+..
T Consensus 103 ~~G~~~~L----~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~-v~~----------R~~~~a~~l~~~~~~~-- 165 (272)
T 1p77_A 103 GIGLVTDL----QRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LAN----------RTFSKTKELAERFQPY-- 165 (272)
T ss_dssp HHHHHHHH----HHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEE----------SSHHHHHHHHHHHGGG--
T ss_pred HHHHHHHH----HHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHcccc--
Confidence 66666655 446778999999999999999999999999998876 777 4666666665442211
Q ss_pred CCCceecCCCccccccCceEEeeCCccCcccc-cch--hcc-CceEEEecCCCCC--CHHHHHHHHHCCCe-Eecc
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITI-NNA--NNV-TAKIILEGANGPT--TTEADDILRDKGII-LAPD 186 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~-e~a--~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~-~iPD 186 (262)
......+ .+++...++||+|-|++...... .+. ..+ ...+|++-...|. |+. .+..+++|.. +++-
T Consensus 166 -~~~~~~~-~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t~l-l~~a~~~G~~~~v~G 238 (272)
T 1p77_A 166 -GNIQAVS-MDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPF-IALCKSLGLTNVSDG 238 (272)
T ss_dssp -SCEEEEE-GGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHH-HHHHHHTTCCCEECS
T ss_pred -CCeEEee-HHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCCHH-HHHHHHcCCCEeeCC
Confidence 0111111 22221137999999987544211 001 112 3468899988884 554 4556889987 7654
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.8e-05 Score=70.56 Aligned_cols=108 Identities=14% Similarity=0.203 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.| +...+.+. +. +.+..++.++++
T Consensus 168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~-~~d-------r~~~~~~~-----~~--------g~~~~~~l~ell- 225 (345)
T 4g2n_A 168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIH-YHN-------RTRLSHAL-----EE--------GAIYHDTLDSLL- 225 (345)
T ss_dssp BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEE-EEC-------SSCCCHHH-----HT--------TCEECSSHHHHH-
T ss_pred ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEE-EEC-------CCCcchhh-----hc--------CCeEeCCHHHHH-
Confidence 457899999999999999999999999999987 444 33233221 11 122232255666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~ 182 (262)
.+||+++-|.+. +.++.+....++ ..+++..+.+++ ..+ ..+.|++..|.
T Consensus 226 ~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 283 (345)
T 4g2n_A 226 GASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLF 283 (345)
T ss_dssp HTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCce
Confidence 489999988764 566667677774 669999999987 333 45777776654
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-05 Score=72.32 Aligned_cols=109 Identities=13% Similarity=0.209 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|. ...+.+...+. + .+..+ .++++
T Consensus 140 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~-~~d~-------~~~~~~~~~~~----g-------~~~~~-l~ell- 198 (330)
T 4e5n_A 140 GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQ-YHEA-------KALDTQTEQRL----G-------LRQVA-CSELF- 198 (330)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEE-EECS-------SCCCHHHHHHH----T-------EEECC-HHHHH-
T ss_pred CCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECC-------CCCcHhHHHhc----C-------ceeCC-HHHHH-
Confidence 446899999999999999999999999999987 4453 22233322111 1 12222 45566
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
..+|+++-|.+. +.++.+....++ ..+++..+.+++ . .+..+.|++.+|.
T Consensus 199 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~ 256 (330)
T 4e5n_A 199 ASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLG 256 (330)
T ss_dssp HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCcc
Confidence 479999988763 466666667774 569999999986 3 4456888888775
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.9e-06 Score=77.44 Aligned_cols=142 Identities=14% Similarity=0.157 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeC----CCceeeCCCCCCHHHHHHH
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA---KIVAIQD----DKTTIYNPNGFNIPKLQKY 108 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D----~~G~i~~~~GlD~~~l~~~ 108 (262)
.||--...++.++++..|.++++++|+|.|.|..|+++++.|.+.|+ +|+ |+| ++|.++..+ +.+++.++
T Consensus 164 gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~-vvd~~~~R~G~~~~a~--~~~~L~~~ 240 (439)
T 2dvm_A 164 GTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEAGVKPENVR-VVELVNGKPRILTSDL--DLEKLFPY 240 (439)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEE-EEEEETTEEEECCTTS--CHHHHSTT
T ss_pred EEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEE-EEEccCCCcCcccccc--chhHHHHH
Confidence 56644567778888888999999999999999999999999999998 555 898 888776543 21222221
Q ss_pred HHhcCCccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 109 VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVT-AKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 109 ~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
++....... ......+..+.+ .++||||-|+.. +.++++....+. ..+|++-+|-.-|+-.++. +++|..++
T Consensus 241 ~~~~a~~~~--~~~~~~~L~e~l-~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A-~~~G~~iv 315 (439)
T 2dvm_A 241 RGWLLKKTN--GENIEGGPQEAL-KDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEA-KKAGARIV 315 (439)
T ss_dssp CHHHHTTSC--TTCCCSSHHHHH-TTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHH-HHHTCSEE
T ss_pred HHHHhhccc--cccccccHHHHh-ccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHH-HHcCCeEE
Confidence 111100000 000011122333 368999999997 899887777774 4599999664434333333 33465554
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00013 Score=65.21 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|+..++ +..+.++++++++|.|.|.+|++++..|.+.|++-|.|++ -+.++..++.++..
T Consensus 106 ~~G~~~~L----~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~n----------Rt~~ka~~La~~~~---- 167 (282)
T 3fbt_A 106 YIGFGKML----SKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVT----------RNPEKTSEIYGEFK---- 167 (282)
T ss_dssp HHHHHHHH----HHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEE----------SCHHHHHHHCTTSE----
T ss_pred HHHHHHHH----HHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHhcC----
Confidence 46665555 4568889999999999999999999999999994344777 35666655543221
Q ss_pred CCCceecCCCccccccCceEEeeCCccCcccc---cc--hhcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEecc
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITI---NN--ANNV-TAKIILEGANGPT-TTEADDILRDKGIILAPD 186 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~---e~--a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~iPD 186 (262)
...+++..+ + ++||+|-|++.+.... .+ ...+ +..+|++-..+|. ||=. +.-+++|..+++.
T Consensus 168 ---~~~~~~l~~-l--~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll-~~A~~~G~~~~~G 236 (282)
T 3fbt_A 168 ---VISYDELSN-L--KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLFL-KYARESGVKAVNG 236 (282)
T ss_dssp ---EEEHHHHTT-C--CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCHHH-HHHHHTTCEEECS
T ss_pred ---cccHHHHHh-c--cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCHHH-HHHHHCcCeEeCc
Confidence 111211122 2 8999999987654321 11 1122 3568999999997 5543 4447899877643
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.5e-05 Score=71.98 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=94.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|.+|+.+|+.|..+|++|+ +.|. +... .... +. +.+..++.++++
T Consensus 155 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~-~~d~----------~~~~-~~~~-~~-------g~~~~~~l~ell- 213 (352)
T 3gg9_A 155 GRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVL-VWGR----------ENSK-ERAR-AD-------GFAVAESKDALF- 213 (352)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------HHHH-HHHH-HT-------TCEECSSHHHHH-
T ss_pred CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEE-EECC----------CCCH-HHHH-hc-------CceEeCCHHHHH-
Confidence 346899999999999999999999999999988 4442 1111 1111 11 223332255666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC--CHHHHHHHHHCCCeE-eccccccchhhHHHHHHHH-
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT--TTEADDILRDKGIIL-APDVITNAGGVIVSYFEWV- 202 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~--t~ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~- 202 (262)
.++|+++-|.+. +.++.+....++ ..+++..+.+++ +.+..+.|++..|.- .=|+..+=- .- ....+.
T Consensus 214 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP-l~-~~~pL~~ 291 (352)
T 3gg9_A 214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-IL-QGHTLLR 291 (352)
T ss_dssp HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSC-CC-SCCGGGG
T ss_pred hhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCC-CC-CCChhhc
Confidence 489999988753 456666666664 568999999986 455678888888752 222221100 00 000111
Q ss_pred -hh---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 203 -QN---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 203 -~~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.| .+|..|..++..+++.+...+++.+.+
T Consensus 292 ~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~ 324 (352)
T 3gg9_A 292 MENCICTPHIGYVERESYEMYFGIAFQNILDIL 324 (352)
T ss_dssp CTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12 336666656665556555555555554
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.5e-05 Score=72.01 Aligned_cols=110 Identities=9% Similarity=0.079 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ .....+.. .+.| .+...+.++++
T Consensus 186 ~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~-~~d~-------~~~~~~~~----~~~G-------~~~~~~l~ell- 245 (393)
T 2nac_A 186 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLH-YTDR-------HRLPESVE----KELN-------LTWHATREDMY- 245 (393)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECS-------SCCCHHHH----HHHT-------CEECSSHHHHG-
T ss_pred CccCCCCEEEEEeECHHHHHHHHHHHhCCCEEE-EEcC-------CccchhhH----hhcC-------ceecCCHHHHH-
Confidence 457999999999999999999999999999987 5452 21222211 1111 22222144566
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
..+||++.+.+. ++++.+....++ ..+++.-+.+++ .. +..+.|++..|.
T Consensus 246 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 303 (393)
T 2nac_A 246 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 303 (393)
T ss_dssp GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCee
Confidence 489999988763 456666666664 568888888876 43 456777776554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=74.55 Aligned_cols=113 Identities=17% Similarity=0.244 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~ 133 (262)
++.++|.|+|+|++|+.+|+.|.+.|..|+ +.| .+.+++.++.+. + ....++..++.. .
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~-v~d----------r~~~~~~~l~~~-g-------~~~~~s~~e~~~~a~ 80 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECV-VYD----------LNVNAVQALERE-G-------IAGARSIEEFCAKLV 80 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHTT-T-------CBCCSSHHHHHHHSC
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEE-EEe----------CCHHHHHHHHHC-C-------CEEeCCHHHHHhcCC
Confidence 357899999999999999999999999987 777 577777666543 1 222222344442 2
Q ss_pred CceEEeeCCccCcccccchhc----c-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccc
Q psy14499 134 PCDILIPAAIEDQITINNANN----V-TAKIILEGANGPT--TTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~----~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~ 188 (262)
.+|+++-|-+.+ ...+.+.. + ..++|+...|.+. +.+..+.+.++|+.+++-.+
T Consensus 81 ~~DvVi~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 81 KPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp SSCEEEECSCGG-GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCC
Confidence 349999998776 33333333 3 4569999998874 45556788899999885443
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-05 Score=71.87 Aligned_cols=156 Identities=14% Similarity=0.098 Sum_probs=90.8
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
+.++.|++|.|+|+|++|+.+|+.|. .+|.+|+ +.|. ..-..+.. .+ .+ .+..++.++++
T Consensus 158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~-~~d~-------~~~~~~~~---~~-~g-------~~~~~~l~ell 218 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLV-YYDV-------APADAETE---KA-LG-------AERVDSLEELA 218 (348)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECS-------SCCCHHHH---HH-HT-------CEECSSHHHHH
T ss_pred CcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEE-EECC-------CCcchhhH---hh-cC-------cEEeCCHHHHh
Confidence 56799999999999999999999999 9999987 5553 21222221 11 11 22222134555
Q ss_pred ccCceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe-EeccccccchhhHHHHHHHH
Q psy14499 132 SIPCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII-LAPDVITNAGGVIVSYFEWV 202 (262)
Q Consensus 132 ~~~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~-~iPD~~aN~GGvi~s~~E~~ 202 (262)
.++|+++.|.+.+ +++.+....++ ..+++.-+.+++ + .+..+.|.+..|. ..-|+..+-- .. ..++.
T Consensus 219 -~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~--~~~L~ 294 (348)
T 2w2k_A 219 -RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QV--SKELI 294 (348)
T ss_dssp -HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SC--CHHHH
T ss_pred -ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CC--Cchhh
Confidence 4899999997654 44444555564 458888888875 4 3445777765554 2345443221 00 11222
Q ss_pred h--h---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 203 Q--N---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 203 ~--~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
+ | ..|..|...+...++.+.+.+++.+.+
T Consensus 295 ~~~nviltPH~~~~t~e~~~~~~~~~~~ni~~~~ 328 (348)
T 2w2k_A 295 EMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFL 328 (348)
T ss_dssp TSSSEEECCSCTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEcCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 1 224555545555555555555555544
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-05 Score=71.98 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=93.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.| +. .+.+.. . .. +.+..+ .++++ .
T Consensus 172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~-~~d-------~~-~~~~~~---~-~~-------g~~~~~-l~ell-~ 229 (365)
T 4hy3_A 172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIR-VFD-------PW-LPRSML---E-EN-------GVEPAS-LEDVL-T 229 (365)
T ss_dssp CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEE-EEC-------SS-SCHHHH---H-HT-------TCEECC-HHHHH-H
T ss_pred cccCCCEEEEecCCcccHHHHHhhhhCCCEEE-EEC-------CC-CCHHHH---h-hc-------CeeeCC-HHHHH-h
Confidence 46889999999999999999999999999988 434 33 222221 1 11 122223 55666 5
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCeEeccccccchhhHHHHHHHHhh-
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGIILAPDVITNAGGVIVSYFEWVQN- 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~~- 204 (262)
.+||++-|.+. ++++.+....++ ..+++.-+-+++ . .+..+.|++..|...=|+..+=--..-+-+.-+.|
T Consensus 230 ~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nv 309 (365)
T 4hy3_A 230 KSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGF 309 (365)
T ss_dssp SCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTE
T ss_pred cCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCE
Confidence 89999987664 466677777774 558899998886 3 44467888776664444433211000000100111
Q ss_pred --hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 --LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 --~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..|...+...++.+...+++.+.+
T Consensus 310 ilTPHia~~t~e~~~~~~~~~~~ni~~~~ 338 (365)
T 4hy3_A 310 IRSAHRAGALDSAFKKMGDMVLEDMDLMD 338 (365)
T ss_dssp EECCSCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 235556555666666655555554443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-05 Score=69.43 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee-cCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK-INDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~-~~~~~~il~~~~ 135 (262)
+.++|.|+|+|++|..+++.|.+.|.+|+ +.| .+.+++.++.+. | ... .++..++. .+|
T Consensus 6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~d----------r~~~~~~~~~~~-g-------~~~~~~~~~e~~-~~a 65 (303)
T 3g0o_A 6 TDFHVGIVGLGSMGMGAARSCLRAGLSTW-GAD----------LNPQACANLLAE-G-------ACGAAASAREFA-GVV 65 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT-T-------CSEEESSSTTTT-TTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHc-C-------CccccCCHHHHH-hcC
Confidence 45789999999999999999999999987 667 577777666554 2 111 22244555 489
Q ss_pred eEEeeCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEec
Q psy14499 136 DILIPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAP 185 (262)
Q Consensus 136 DIlipaa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iP 185 (262)
|++|.|.+.+....+ ..+.+ +.++|+...+.+. +.+..+.+.++|+.++.
T Consensus 66 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~ 125 (303)
T 3g0o_A 66 DALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD 125 (303)
T ss_dssp SEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred CEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 999999886432222 22333 3568887776543 23445677888988764
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.5e-05 Score=72.46 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC
Q psy14499 40 GVFIIGSKIA-SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118 (262)
Q Consensus 40 Gv~~~~~~~~-~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~ 118 (262)
|...++...+ +..+..+.|++++|.|+|.+|+.+|+.|..+|++|+ ++| .|+.++.+.....
T Consensus 246 Gt~~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Vi-v~D----------~~~~~a~~Aa~~g------ 308 (488)
T 3ond_A 246 GCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVI-VTE----------IDPICALQATMEG------ 308 (488)
T ss_dssp HHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHTT------
T ss_pred cccHHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHhC------
Confidence 3333333333 445888999999999999999999999999999987 778 6776665554431
Q ss_pred CCceecCCCccccccCceEEeeCCc-cCcccccchhccC-ceEEEecCCC
Q psy14499 119 NEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANG 166 (262)
Q Consensus 119 ~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~-~kiIve~AN~ 166 (262)
....+ .++++ ..+|+++.++. .++++.+....++ .-+|+..+..
T Consensus 309 --~dv~~-lee~~-~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 309 --LQVLT-LEDVV-SEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp --CEECC-GGGTT-TTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred --CccCC-HHHHH-HhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence 12222 34444 47999998875 4778777777774 3366666654
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=3e-05 Score=71.31 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=92.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|.+- +.. .. ...| .+...+.++++ .
T Consensus 164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~-~~d~~~--------~~~-~~---~~~g-------~~~~~~l~ell-~ 222 (347)
T 1mx3_A 164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVL-FYDPYL--------SDG-VE---RALG-------LQRVSTLQDLL-F 222 (347)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECTTS--------CTT-HH---HHHT-------CEECSSHHHHH-H
T ss_pred cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EECCCc--------chh-hH---hhcC-------CeecCCHHHHH-h
Confidence 47899999999999999999999999999987 555321 111 11 1111 22222245566 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCeEe-ccccccchhhH-HHHHHHHh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGIILA-PDVITNAGGVI-VSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~~i-PD~~aN~GGvi-~s~~E~~~ 203 (262)
.+||++.|.+. ++++.+....++ ..+++.-+.+++ . .+..+.|++.+|.-. -|+..+---.. .+-+.-..
T Consensus 223 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~ 302 (347)
T 1mx3_A 223 HSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 302 (347)
T ss_dssp HCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCS
T ss_pred cCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCC
Confidence 89999988654 456666666664 458889998876 4 345688888876522 22222110000 00000011
Q ss_pred h---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 204 N---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 204 ~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
| ..|..|..++....+.+...+++.+.+
T Consensus 303 nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~ 333 (347)
T 1mx3_A 303 NLICTPHAAWYSEQASIEMREEAAREIRRAI 333 (347)
T ss_dssp SEEECSSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 235556556666666665555555544
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00013 Score=66.66 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+ . .+.. ... +.| .+..+ .++++
T Consensus 160 ~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~-~~d~-------~-~~~~---~~~-~~g-------~~~~~-l~ell- 217 (335)
T 2g76_A 160 GTELNGKTLGILGLGRIGREVATRMQSFGMKTI-GYDP-------I-ISPE---VSA-SFG-------VQQLP-LEEIW- 217 (335)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECS-------S-SCHH---HHH-HTT-------CEECC-HHHHG-
T ss_pred CcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEE-EECC-------C-cchh---hhh-hcC-------ceeCC-HHHHH-
Confidence 457999999999999999999999999999987 4442 2 1221 111 111 22222 45566
Q ss_pred cCceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++|+++.|.+.+ +++.+....++ ..+++.-+-+++ . .+..+.|++..|.
T Consensus 218 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 218 PLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp GGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred hcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 4899999987653 45555666664 568888888876 3 3346778877654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00013 Score=65.18 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++ ..+.++++++++|.|.|.+|++++..|.+.|++-|.|++ -+.++..++.++.+..
T Consensus 111 ~~G~~~~l~----~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~----------R~~~~a~~la~~~~~~-- 174 (283)
T 3jyo_A 111 VSGFGRGME----EGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVAD----------LDTSRAQALADVINNA-- 174 (283)
T ss_dssp HHHHHHHHH----HHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEEC----------SSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHH----HhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEE----------CCHHHHHHHHHHHHhh--
Confidence 566666654 456789999999999999999999999999995344877 3566655554322110
Q ss_pred CCC--ceecCCCccccc--cCceEEeeCCccCccccc--c--hhcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEec
Q psy14499 118 FNE--GEKINDSKEFWS--IPCDILIPAAIEDQITIN--N--ANNV-TAKIILEGANGPT-TTEADDILRDKGIILAP 185 (262)
Q Consensus 118 ~~~--~~~~~~~~~il~--~~~DIlipaa~~~~it~e--~--a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~iP 185 (262)
+++ ...++ .+++-+ .++||+|-|++.+.-... + ...+ +..+|++-..+|. ||=. +.-+++|..+++
T Consensus 175 ~~~~~i~~~~-~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~ll-~~A~~~G~~~~~ 250 (283)
T 3jyo_A 175 VGREAVVGVD-ARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELL-KAARALGCETLD 250 (283)
T ss_dssp HTSCCEEEEC-STTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSCHHH-HHHHHHTCCEEC
T ss_pred cCCceEEEcC-HHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCCHHH-HHHHHCcCeEeC
Confidence 111 11222 222221 379999999875432211 1 1223 3568999999996 6544 344778987763
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-05 Score=66.39 Aligned_cols=169 Identities=11% Similarity=0.175 Sum_probs=100.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
..||.++|+|++|..+|+.|.+.|++|+ +.| .+.+++.++.+. +++..+++.++. .+|||
T Consensus 5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~--------G~~~~~s~~e~~-~~~dv 64 (297)
T 4gbj_A 5 SEKIAFLGLGNLGTPIAEILLEAGYELV-VWN----------RTASKAEPLTKL--------GATVVENAIDAI-TPGGI 64 (297)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEE-EC-----------------CTTTTT--------TCEECSSGGGGC-CTTCE
T ss_pred CCcEEEEecHHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHc--------CCeEeCCHHHHH-hcCCc
Confidence 4689999999999999999999999987 766 444444333222 344444355555 58999
Q ss_pred EeeCCccCc-----ccccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH--------------
Q psy14499 138 LIPAAIEDQ-----ITINNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI-------------- 195 (262)
Q Consensus 138 lipaa~~~~-----it~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi-------------- 195 (262)
++-|-+.+. +.++....+ +.++|++..+... +.+..+.+.++|+.++=-.+. ||..
T Consensus 65 vi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVs--Gg~~~a~~g~l~im~gG~ 142 (297)
T 4gbj_A 65 VFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIF--ARPEAVRAKVGNICLSGN 142 (297)
T ss_dssp EEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE--CCHHHHHHTCCEEEEEEC
T ss_pred eeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcC--CCccccccccceeecccc
Confidence 998866432 222323333 4568888887653 456678889999999844433 3321
Q ss_pred HHHHHHHhh----hcC--CCC----CHHH----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 196 VSYFEWVQN----LSN--LLW----TEQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 196 ~s~~E~~~~----~~~--~~~----~~~~----v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
-..+|-++. ... +++ ..-+ +...+...+...+.+.+..+++.|+++.+...++
T Consensus 143 ~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l 209 (297)
T 4gbj_A 143 AGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEML 209 (297)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222221 110 111 1122 3344555556677888899999999998765544
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.99 E-value=5.3e-05 Score=68.35 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|++ .+.+ .. .+.| .+..+ .++++ .
T Consensus 138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~--------~~~~---~~-~~~g-------~~~~~-l~ell-~ 195 (307)
T 1wwk_A 138 IELEGKTIGIIGFGRIGYQVAKIANALGMNIL-LYDPY--------PNEE---RA-KEVN-------GKFVD-LETLL-K 195 (307)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS--------CCHH---HH-HHTT-------CEECC-HHHHH-H
T ss_pred cccCCceEEEEccCHHHHHHHHHHHHCCCEEE-EECCC--------CChh---hH-hhcC-------ccccC-HHHHH-h
Confidence 47899999999999999999999999999987 55531 1111 11 1211 22223 45566 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
++|+++.|.+. ++++.+....++ ..+++.-+-+++ .. +..+.|++..|.
T Consensus 196 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 196 ESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp HCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 89999998764 445555556664 457888888875 43 346778777654
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00022 Score=62.94 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=98.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|++|+ +.| .+.+++.+..+. +....++..++. .+||++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~-~~d----------r~~~~~~~~~~~--------g~~~~~~~~~~~-~~aDvv 61 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVT-IWN----------RSPEKAEELAAL--------GAERAATPCEVV-ESCPVT 61 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSGGGGHHHHHT--------TCEECSSHHHHH-HHCSEE
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC--------CCeecCCHHHHH-hcCCEE
Confidence 689999999999999999999999987 667 455555555443 122233234444 479999
Q ss_pred eeCCccCcccccch-------hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH-------------
Q psy14499 139 IPAAIEDQITINNA-------NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI------------- 195 (262)
Q Consensus 139 ipaa~~~~it~e~a-------~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi------------- 195 (262)
+.|.+......+.. +.+ +.++|+...+.+. +.+..+.+.++|+.++.-.+. |+..
T Consensus 62 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~--g~~~~a~~g~l~~~~gg 139 (287)
T 3pef_A 62 FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS--GSKKPAEDGTLIILAAG 139 (287)
T ss_dssp EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE--CCHHHHHHTCEEEEEEE
T ss_pred EEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCc--CCHHHHhcCCEEEEEeC
Confidence 99987532222222 233 4567887766543 244456778899988732222 2221
Q ss_pred -HHHHHHHhh----hc----CC-CCCHHHHHHHHHHH----HHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 196 -VSYFEWVQN----LS----NL-LWTEQEINLRLNNI----ICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 196 -~s~~E~~~~----~~----~~-~~~~~~v~~~l~~~----~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
-..++.++. .. .. .....+....+.+. +...+.+.+..+++.|+++.+..-.+.
T Consensus 140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~ 207 (287)
T 3pef_A 140 DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIG 207 (287)
T ss_dssp CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 111222221 11 00 01122222222332 234677888889999999888766654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.8e-05 Score=69.17 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=70.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|.+. -..+.+ .+. +....+ .++++ .
T Consensus 151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~-------~~~~~~----~~~-------g~~~~~-l~e~l-~ 209 (330)
T 2gcg_A 151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF-LYTGRQ-------PRPEEA----AEF-------QAEFVS-TPELA-A 209 (330)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEE-EEESSS-------CCHHHH----HTT-------TCEECC-HHHHH-H
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-------cchhHH----Hhc-------CceeCC-HHHHH-h
Confidence 46899999999999999999999999999987 545211 112221 111 122222 44555 4
Q ss_pred CceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
+||+++.|.+.. +++.+....++ ..+++..+.+++ + .+..+.|++.++.
T Consensus 210 ~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ 266 (330)
T 2gcg_A 210 QSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIA 266 (330)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCcc
Confidence 899999998754 34444445554 457888888865 4 4456778776653
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=8.4e-06 Score=75.28 Aligned_cols=171 Identities=11% Similarity=0.115 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCC--CCCH-HHHHHHHHhc-CCccCCCCceecCCCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPN--GFNI-PKLQKYVTFT-RSIKDFNEGEKINDSK 128 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~--GlD~-~~l~~~~~~~-g~~~~~~~~~~~~~~~ 128 (262)
+..+|+|+|+|.||+.+++.|.+. +.++++|+|++...++++ |++. ....+..+.. + ...+ .+
T Consensus 3 k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~~~~~~~gi~~~~~~~e~l~~~~~--------~~~d-id 73 (358)
T 1ebf_A 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTT--------KTLP-LD 73 (358)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCC--------BCCC-HH
T ss_pred ceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhhhccccCCCCccccHHHHHhcccC--------CCCC-HH
Confidence 447899999999999999999885 379999999987778776 8765 3333333321 1 0001 22
Q ss_pred cccc-----cCceEEeeCCccCcccccchhcc-CceEEEecCCCCCC---HHHHHHH--HHCCCeEeccccccchh---h
Q psy14499 129 EFWS-----IPCDILIPAAIEDQITINNANNV-TAKIILEGANGPTT---TEADDIL--RDKGIILAPDVITNAGG---V 194 (262)
Q Consensus 129 ~il~-----~~~DIlipaa~~~~it~e~a~~~-~~kiIve~AN~p~t---~ea~~~l--~~rgi~~iPD~~aN~GG---v 194 (262)
.+++ ...||+++|++....-.....-+ ..|.|+-+...|++ .++.++. +++|+.+. |-++.|+ +
T Consensus 74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~~A~~~gv~~~--~Ea~vg~giPi 151 (358)
T 1ebf_A 74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVY--HEATVGAGLPI 151 (358)
T ss_dssp HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEE--CGGGTTTTSSC
T ss_pred HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHHHHHHcCCEEE--EccccccCCcH
Confidence 2321 13499999998643222222223 56777777667775 4444433 45787776 4444443 3
Q ss_pred HHHHHHHHhhhcCC-----CCC--HHHHHHHHH---HHHHHHHHHHHHHHhhcCC
Q psy14499 195 IVSYFEWVQNLSNL-----LWT--EQEINLRLN---NIICNAFDAIWELANTKKV 239 (262)
Q Consensus 195 i~s~~E~~~~~~~~-----~~~--~~~v~~~l~---~~~~~~~~~v~~~a~~~~~ 239 (262)
+....+++..-..+ -++ -.-++.++. +. ...+.++++.|++.|.
T Consensus 152 i~~l~~~l~~G~~I~~I~GIlnGT~nyil~~m~~~~~~-g~~f~~~l~eAq~~Gy 205 (358)
T 1ebf_A 152 ISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQAN-DVKFSDVVKVAKKLGY 205 (358)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCC-CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCeEEEEEEEeecceeeeccccccccc-CCCHHHHHHHHHHcCC
Confidence 44445555210000 011 111222221 00 1357888888888775
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=69.86 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=76.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
+++.++|.|+|+|++|+.+++.|.+.|..|+ +.| .+++++.++.+. +.+..++..++. .+
T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~-~~d----------r~~~~~~~l~~~--------g~~~~~~~~e~~-~~ 87 (320)
T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQ-VWN----------RTPARAASLAAL--------GATIHEQARAAA-RD 87 (320)
T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHTT--------TCEEESSHHHHH-TT
T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEE-EEc----------CCHHHHHHHHHC--------CCEeeCCHHHHH-hc
Confidence 3467899999999999999999999999977 667 577777666543 223333244444 48
Q ss_pred ceEEeeCCccCccccc------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecc
Q psy14499 135 CDILIPAAIEDQITIN------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPD 186 (262)
Q Consensus 135 ~DIlipaa~~~~it~e------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD 186 (262)
||+++.|.+......+ ..+.+ +.++|+...+.+. +.+..+.+.++|+.++.-
T Consensus 88 aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~ 148 (320)
T 4dll_A 88 ADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDT 148 (320)
T ss_dssp CSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 9999999875432222 22233 4568888877654 344557788899988743
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.8e-05 Score=67.94 Aligned_cols=108 Identities=14% Similarity=0.192 Sum_probs=73.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|++.. ...+++ ......+.++++
T Consensus 135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~-~~dr~~~--~~~~~~------------------~~~~~~~l~ell- 192 (324)
T 3hg7_A 135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVL-GVSRSGR--ERAGFD------------------QVYQLPALNKML- 192 (324)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC--CCTTCS------------------EEECGGGHHHHH-
T ss_pred CcccccceEEEEEECHHHHHHHHHHHhCCCEEE-EEcCChH--Hhhhhh------------------cccccCCHHHHH-
Confidence 457899999999999999999999999999988 4453220 000000 001111144555
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.+|||++-|.+. ++++.+....++ ..+++.-+.+++ . .+..+.|++..|.
T Consensus 193 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ 250 (324)
T 3hg7_A 193 AQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250 (324)
T ss_dssp HTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSS
T ss_pred hhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCce
Confidence 589999988663 566666666664 569999999986 3 4446888877763
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.2e-05 Score=69.06 Aligned_cols=108 Identities=12% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|++ .|.+..- .++++ .....++.++++
T Consensus 132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~--~~~~~------------------~~~~~~~l~ell- 189 (324)
T 3evt_A 132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIG-VNTTGHP--ADHFH------------------ETVAFTATADAL- 189 (324)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE-EESSCCC--CTTCS------------------EEEEGGGCHHHH-
T ss_pred CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEE-ECCCcch--hHhHh------------------hccccCCHHHHH-
Confidence 4578999999999999999999999999999984 4432110 01110 001112245666
Q ss_pred cCceEEeeCCc-----cCcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAI-----EDQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~-----~~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.+||+++-|.+ .++++.+....++ ..+++..+.+++ . ....+.|++..|.
T Consensus 190 ~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 247 (324)
T 3evt_A 190 ATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS 247 (324)
T ss_dssp HHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCS
T ss_pred hhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCce
Confidence 48999998866 3566666667674 558999999886 4 3345778777664
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=7.2e-05 Score=67.85 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=89.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|+. . -+.. ... +.+ .+..++.++++ .
T Consensus 142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~------~-~~~~---~~~-~~g-------~~~~~~l~ell-~ 201 (320)
T 1gdh_A 142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDID-YFDTH------R-ASSS---DEA-SYQ-------ATFHDSLDSLL-S 201 (320)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSS------C-CCHH---HHH-HHT-------CEECSSHHHHH-H
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCC------C-cChh---hhh-hcC-------cEEcCCHHHHH-h
Confidence 46899999999999999999999999999987 55520 1 1221 111 111 22222244555 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCCeE-eccccccchhhHHHHHHHHhh
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGIIL-APDVITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~~ 204 (262)
++|+++.|.+. ++++.+....++ ..+++.-+.+++ ..+ ..+.|++..|.- .-|++.+-- .....+.+.
T Consensus 202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP---~~~~~L~~~ 278 (320)
T 1gdh_A 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP---NINEGYYDL 278 (320)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT---SCCTTGGGC
T ss_pred hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC---CCCChhhhC
Confidence 89999998764 345555555563 568888888865 433 467787776541 223332111 001112221
Q ss_pred -----hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 205 -----LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 205 -----~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
.+|..|..++..+++.+.. +++.+.+
T Consensus 279 ~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~ 309 (320)
T 1gdh_A 279 PNTFLFPHIGSAATQAREDMAHQA-NDLIDAL 309 (320)
T ss_dssp TTEEECSSCTTCBHHHHHHHHHHH-HHHHHHH
T ss_pred CCEEECCcCCcCcHHHHHHHHHHH-HHHHHHH
Confidence 2355555455555666655 5555554
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.9e-05 Score=69.34 Aligned_cols=107 Identities=15% Similarity=0.231 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|.+. +.+.. .+.+ ....+ .++++ .
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~d~~~--------~~~~~----~~~g-------~~~~~-l~e~l-~ 199 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLY-YWSRHR--------KVNVE----KELK-------ARYMD-IDELL-E 199 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECSSC--------CHHHH----HHHT-------EEECC-HHHHH-H
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCc--------chhhh----hhcC-------ceecC-HHHHH-h
Confidence 67899999999999999999999999999987 555311 11111 1111 12122 44555 4
Q ss_pred CceEEeeCCccC-----cccccchhccCceEEEecCCCCCC-HH-HHHHHHHCCCe
Q psy14499 134 PCDILIPAAIED-----QITINNANNVTAKIILEGANGPTT-TE-ADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~~-----~it~e~a~~~~~kiIve~AN~p~t-~e-a~~~l~~rgi~ 182 (262)
++|+++.|.+.+ +++.+....++..+++..+.+++. .+ ..+.|++..|.
T Consensus 200 ~aDiVil~vp~~~~t~~~i~~~~~~~mk~gilin~srg~~vd~~aL~~aL~~~~i~ 255 (333)
T 2d0i_A 200 KSDIVILALPLTRDTYHIINEERVKKLEGKYLVNIGRGALVDEKAVTEAIKQGKLK 255 (333)
T ss_dssp HCSEEEECCCCCTTTTTSBCHHHHHHTBTCEEEECSCGGGBCHHHHHHHHHTTCBC
T ss_pred hCCEEEEcCCCChHHHHHhCHHHHhhCCCCEEEECCCCcccCHHHHHHHHHcCCce
Confidence 899999998765 444444445532288999988864 33 35777776554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=67.59 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|.+|+ +.|.+.. . .. +.....+.++++
T Consensus 166 ~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~-~~dr~~~-------~---------~~-------~~~~~~sl~ell- 220 (340)
T 4dgs_A 166 GHSPKGKRIGVLGLGQIGRALASRAEAFGMSVR-YWNRSTL-------S---------GV-------DWIAHQSPVDLA- 220 (340)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSCC-------T---------TS-------CCEECSSHHHHH-
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCCcc-------c---------cc-------CceecCCHHHHH-
Confidence 457899999999999999999999999999987 5553210 0 00 111222245555
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC--CHHHHHHHHHCCCeE-eccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT--TTEADDILRDKGIIL-APDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~--t~ea~~~l~~rgi~~-iPD~~aN~GGvi~s~~E~~~ 203 (262)
.++|+++-|.+. ++++.+....++ ..+++..+.+++ +.+..+.|++..|.- .-|+..+=--. .+ .+.+
T Consensus 221 ~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~-~~--~L~~ 297 (340)
T 4dgs_A 221 RDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RS--EFHT 297 (340)
T ss_dssp HTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSC-CS--HHHH
T ss_pred hcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCC-cc--chhh
Confidence 489999988763 556666666664 568999999987 344457777766642 23333221111 11 2222
Q ss_pred --h---hcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14499 204 --N---LSNLLWTEQEINLRLNNIICNAFDAI 230 (262)
Q Consensus 204 --~---~~~~~~~~~~v~~~l~~~~~~~~~~v 230 (262)
| .+|..|...+...++.+.+.+++.+.
T Consensus 298 ~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~ 329 (340)
T 4dgs_A 298 TPNTVLMPHQGSATVETRMAMGKLVLANLAAH 329 (340)
T ss_dssp SSSEEECSSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1 23555554555555555554555444
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00011 Score=70.24 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=71.9
Q ss_pred HhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 51 ~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
..+..+.|++|.|+|+|.+|+.+|+.|..+|++|+ +.| .++...++.... +.+..+ .+++
T Consensus 250 ~~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Vi-v~d----------~~~~~~~~a~~~--------g~~~~~-l~el 309 (479)
T 1v8b_A 250 ATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITE----------IDPICAIQAVME--------GFNVVT-LDEI 309 (479)
T ss_dssp HHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EEC----------SCHHHHHHHHTT--------TCEECC-HHHH
T ss_pred ccccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEE-EEe----------CChhhHHHHHHc--------CCEecC-HHHH
Confidence 34778999999999999999999999999999988 666 455554333321 122223 4555
Q ss_pred cccCceEEeeCCc-cCcccccchhccC-ceEEEecCCCCC
Q psy14499 131 WSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANGPT 168 (262)
Q Consensus 131 l~~~~DIlipaa~-~~~it~e~a~~~~-~kiIve~AN~p~ 168 (262)
+ .++|+++-|+. .++++.+....++ ..+|+.-+-+++
T Consensus 310 l-~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~ 348 (479)
T 1v8b_A 310 V-DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDD 348 (479)
T ss_dssp T-TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred H-hcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence 5 48999999954 5778888888775 458888888766
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.4e-05 Score=68.67 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=105.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.++|+|++|...|+.|.+.|+.|+ |.| .+++++.++.+. +++..+++.++. .+|||+
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~-v~d----------r~~~~~~~l~~~--------Ga~~a~s~~e~~-~~~dvv 63 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFD----------LVQSAVDGLVAA--------GASAARSARDAV-QGADVV 63 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHT--------TCEECSSHHHHH-TTCSEE
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEE-EEc----------CCHHHHHHHHHc--------CCEEcCCHHHHH-hcCCce
Confidence 489999999999999999999999987 777 678887777664 234333344554 589999
Q ss_pred eeCCccCc-----cccc--chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhHH------------
Q psy14499 139 IPAAIEDQ-----ITIN--NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIV------------ 196 (262)
Q Consensus 139 ipaa~~~~-----it~e--~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi~------------ 196 (262)
+-|=+... +.++ ....+ +-++|++..+... +.+..+.++++|+.++=-.+. ||+..
T Consensus 64 ~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVs--Gg~~~A~~G~L~imvGG 141 (300)
T 3obb_A 64 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS--GGTAGAAAGTLTFMVGG 141 (300)
T ss_dssp EECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE--SCHHHHHHTCEEEEEES
T ss_pred eecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCC--CCHHHHHhCCEEEEEeC
Confidence 98855322 2221 12233 3578999888754 566778889999999843333 44421
Q ss_pred --HHHHHHhh----hc-CCC----CC----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 197 --SYFEWVQN----LS-NLL----WT----EQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 197 --s~~E~~~~----~~-~~~----~~----~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
..||-++. .. .+. .. ..-+...+...+-..+.+.+..+++.|+++.+...++
T Consensus 142 ~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl 208 (300)
T 3obb_A 142 DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIM 208 (300)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 12222211 00 000 01 1123334445555667788888899999887665443
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=9.3e-05 Score=71.07 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=76.1
Q ss_pred HhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 51 ~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
..|.++.|++|.|+|+|.||+.+|+.|..+|++|+ +.| .++...++.... +.+..+ .+++
T Consensus 270 ~~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~-v~d----------~~~~~~~~a~~~--------G~~~~~-l~el 329 (494)
T 3d64_A 270 ATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVW-VTE----------IDPICALQAAME--------GYRVVT-MEYA 329 (494)
T ss_dssp HHCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC----------SCHHHHHHHHTT--------TCEECC-HHHH
T ss_pred ccccccCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEe----------CChHhHHHHHHc--------CCEeCC-HHHH
Confidence 35778999999999999999999999999999988 666 455543332221 222223 4556
Q ss_pred cccCceEEeeCCc-cCcccccchhccC-ceEEEecCCCCC--CHHHHHHHHH
Q psy14499 131 WSIPCDILIPAAI-EDQITINNANNVT-AKIILEGANGPT--TTEADDILRD 178 (262)
Q Consensus 131 l~~~~DIlipaa~-~~~it~e~a~~~~-~kiIve~AN~p~--t~ea~~~l~~ 178 (262)
+ .++||++-|.. .++++.+....++ .-+|+.-+-+++ ..++-+.|++
T Consensus 330 l-~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL~AL~~ 380 (494)
T 3d64_A 330 A-DKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQW 380 (494)
T ss_dssp T-TTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGGTTSEE
T ss_pred H-hcCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHHHhhhc
Confidence 5 48999999964 5788888888885 558888888876 4333344433
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=66.99 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=93.7
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|+++.|+|+|++|+.+|+.|..+|++|+ +.|.... .. . .......+.++++
T Consensus 151 ~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~-~yd~~~~------~~----------~------~~~~~~~sl~ell- 206 (416)
T 3k5p_A 151 SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR-YYDTSDK------LQ----------Y------GNVKPAASLDELL- 206 (416)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECTTCC------CC----------B------TTBEECSSHHHHH-
T ss_pred CccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EECCcch------hc----------c------cCcEecCCHHHHH-
Confidence 357899999999999999999999999999988 5553210 00 0 0122222245666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe-EeccccccchhhHHHH--HHH
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII-LAPDVITNAGGVIVSY--FEW 201 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~-~iPD~~aN~GGvi~s~--~E~ 201 (262)
..||+++-|.+. +.++.+....++ ..+++..+.+++ . ++..+.|++..+. ..-|+..+=--..-.. ..+
T Consensus 207 ~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL 286 (416)
T 3k5p_A 207 KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPL 286 (416)
T ss_dssp HHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTT
T ss_pred hhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhH
Confidence 489999988764 567767677774 569999999987 3 4446777776654 3334322210000000 011
Q ss_pred H--hh---hcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14499 202 V--QN---LSNLLWTEQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 202 ~--~~---~~~~~~~~~~v~~~l~~~~~~~~~~v~ 231 (262)
. .| .+|..|..++..+.+...+.+++.+.+
T Consensus 287 ~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l 321 (416)
T 3k5p_A 287 QGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYS 321 (416)
T ss_dssp TTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11 346666666666666665555555544
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00036 Score=63.51 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.+++|.|+|+|++|+.+|+.|..+|.+|+ +.|.+. +.+.. .+.+ ....+ .++++
T Consensus 145 ~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~-~~d~~~--------~~~~~----~~~g-------~~~~~-l~~~l- 202 (334)
T 2dbq_A 145 GYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRIL-YYSRTR--------KEEVE----RELN-------AEFKP-LEDLL- 202 (334)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CHHHH----HHHC-------CEECC-HHHHH-
T ss_pred ccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEE-EECCCc--------chhhH----hhcC-------cccCC-HHHHH-
Confidence 357899999999999999999999999999987 555311 12111 1111 12112 34555
Q ss_pred cCceEEeeCCccCc-----ccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIEDQ-----ITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~~~-----it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
.++|+++.|.+.+. ++.+....++ ..+++.-+.+++ +. +..+.|.+..|.
T Consensus 203 ~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ 260 (334)
T 2dbq_A 203 RESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIA 260 (334)
T ss_dssp HHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 48999999887654 3333444453 557888888876 33 345777776553
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00045 Score=62.63 Aligned_cols=134 Identities=20% Similarity=0.180 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++|...++ +..+.++++++++|.|.|.+|++++..|.+.|+ +|+ |++++. -+.++..++.++.+...
T Consensus 138 ~~Gf~~~L----~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~-i~nR~~-------~~~~~a~~la~~~~~~~ 205 (315)
T 3tnl_A 138 GTGYMRAL----KEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEIS-IFNRKD-------DFYANAEKTVEKINSKT 205 (315)
T ss_dssp HHHHHHHH----HHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEE-EEECSS-------TTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH----HHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEE-EEECCC-------chHHHHHHHHHHhhhhc
Confidence 56665555 446889999999999999999999999999999 555 777421 11565555543321100
Q ss_pred CCCCcee--cCCCccccc--cCceEEeeCCccCcccc---cc---hhcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEe
Q psy14499 117 DFNEGEK--INDSKEFWS--IPCDILIPAAIEDQITI---NN---ANNV-TAKIILEGANGPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 117 ~~~~~~~--~~~~~~il~--~~~DIlipaa~~~~it~---e~---a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~i 184 (262)
+. .... +++.+++-+ .++||+|-|++-+.... .+ ...+ +..+|++-..+|. ||=. +.-+++|..++
T Consensus 206 ~~-~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~~T~ll-~~A~~~G~~~~ 283 (315)
T 3tnl_A 206 DC-KAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLL-EIAEEQGCQTL 283 (315)
T ss_dssp SC-EEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSSSCHHH-HHHHHTTCEEE
T ss_pred CC-ceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCCCCHHH-HHHHHCCCeEe
Confidence 00 0111 221111211 37999999987554321 11 2223 3568999999997 5544 44478998776
Q ss_pred c
Q psy14499 185 P 185 (262)
Q Consensus 185 P 185 (262)
+
T Consensus 284 ~ 284 (315)
T 3tnl_A 284 N 284 (315)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.3e-05 Score=68.25 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|++. +. . .+. ..+..+ .++++
T Consensus 143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~-~~d~~~--------~~-~----~~~--------~~~~~~-l~ell- 198 (343)
T 2yq5_A 143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVI-AYDVAY--------NP-E----FEP--------FLTYTD-FDTVL- 198 (343)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC--------CG-G----GTT--------TCEECC-HHHHH-
T ss_pred ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEE-EECCCh--------hh-h----hhc--------cccccC-HHHHH-
Confidence 346889999999999999999999999999988 545321 10 0 000 112223 55666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++||++-|.+. ++++.+....++ ..+++.-+-+++ . .+..+.|++..|.
T Consensus 199 ~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ 256 (343)
T 2yq5_A 199 KEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIA 256 (343)
T ss_dssp HHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCc
Confidence 489999988773 566667667674 569999999886 3 4456888887663
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00055 Score=60.65 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++.|+..+++ ..+.++++++++|.|.|.+|+++++.|.+.| +|+ ++| .+.+++.++.++.+...
T Consensus 111 d~~G~~~~L~----~~~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~-v~~----------r~~~~~~~l~~~~~~~~ 174 (287)
T 1nvt_A 111 DGIGARMALE----EEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IAN----------RTVEKAEALAKEIAEKL 174 (287)
T ss_dssp HHHHHHHHHH----HHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EEC----------SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----HhCCCcCCCEEEEECchHHHHHHHHHHHHCC-CEE-EEE----------CCHHHHHHHHHHHhhhc
Confidence 7788877765 3467889999999999999999999999999 876 777 35555544433211000
Q ss_pred CCCC--ceecCCCccccccCceEEeeCCccCccc---cc---chhcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEec
Q psy14499 117 DFNE--GEKINDSKEFWSIPCDILIPAAIEDQIT---IN---NANNV-TAKIILEGANGPT-TTEADDILRDKGIILAP 185 (262)
Q Consensus 117 ~~~~--~~~~~~~~~il~~~~DIlipaa~~~~it---~e---~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~iP 185 (262)
.... ...+.+..+.+ .++||+|-|+...... .. ....+ ...+|++-.-+|. |+ ..+..+++|..+++
T Consensus 175 ~~~~~~~~d~~~~~~~~-~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t~-ll~~a~~~G~~~~~ 251 (287)
T 1nvt_A 175 NKKFGEEVKFSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETV-LLKEAKKVNAKTIN 251 (287)
T ss_dssp TCCHHHHEEEECTTCCC-TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCH-HHHHHHTTTCEEEC
T ss_pred ccccceeEEEeeHHHhh-CCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccCH-HHHHHHHCCCEEeC
Confidence 0000 00011112223 4799999998754321 11 11233 3568899887775 54 33455788987654
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.1e-05 Score=68.25 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
++|...++ +..+.++++++++|+|.|.+|++++..|.+.|+ +|+ |+++ +.++..++.+
T Consensus 101 ~~G~~~~L----~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~-v~~R----------~~~~a~~la~------ 159 (277)
T 3don_A 101 GIGYVNGL----KQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLT-VANR----------TMSRFNNWSL------ 159 (277)
T ss_dssp HHHHHHHH----HHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCE-EECS----------CGGGGTTCCS------
T ss_pred HHHHHHHH----HHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEE-EEeC----------CHHHHHHHHH------
Confidence 66665555 445788999999999999999999999999998 555 7774 2222111111
Q ss_pred CCCCceecCCCccccccCceEEeeCCccCcccc--cc--hhcc-CceEEEecCCCCC-CHHHHHHHHHCCCeEec
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIEDQITI--NN--ANNV-TAKIILEGANGPT-TTEADDILRDKGIILAP 185 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~--e~--a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi~~iP 185 (262)
.+ ....+++..+.+ .++||+|-|++.+.... ++ ...+ +..+|++-.-+|. |+ ..+..+++|+.+++
T Consensus 160 ~~-~~~~~~~~~~~~-~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T~-ll~~A~~~G~~~~~ 231 (277)
T 3don_A 160 NI-NKINLSHAESHL-DEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKTP-ILIEAEQRGNPIYN 231 (277)
T ss_dssp CC-EEECHHHHHHTG-GGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSCH-HHHHHHHTTCCEEC
T ss_pred hc-ccccHhhHHHHh-cCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCCH-HHHHHHHCcCEEeC
Confidence 00 011111112222 47999999987543221 11 1223 4568999998886 64 45556899987763
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.7e-05 Score=71.17 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=93.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH----------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK----------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~----------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
++..+|+|+|+|+||+.+++.|.+ .+.++++|+| .|..+...... +....+
T Consensus 8 Mk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d----------~~~~~~~~~~~---------~~~~~~ 68 (444)
T 3mtj_A 8 MKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAV----------RNLDKAEALAG---------GLPLTT 68 (444)
T ss_dssp CSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEEC----------SCHHHHHHHHT---------TCCEES
T ss_pred hCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEE----------CCHHHhhhhcc---------cCcccC
Confidence 356899999999999999988864 4689999999 45555433311 122334
Q ss_pred CCccccc-cCceEEeeCCccCcccccchhcc--CceEEEecCCCCCC---HHHHHHHHHCCCeEeccccccchhh---HH
Q psy14499 126 DSKEFWS-IPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTT---TEADDILRDKGIILAPDVITNAGGV---IV 196 (262)
Q Consensus 126 ~~~~il~-~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t---~ea~~~l~~rgi~~iPD~~aN~GGv---i~ 196 (262)
+.++++. .++|+++.|+++...+.+.+... ..|.|+-.....+. .+..+..+++|+.+. |.++.++- +.
T Consensus 69 d~~ell~d~diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~--~Ea~V~~giPii~ 146 (444)
T 3mtj_A 69 NPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVT--FEAAVAGGIPIIK 146 (444)
T ss_dssp CTHHHHTCTTCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE--CGGGSSTTSCHHH
T ss_pred CHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEE--EEEeeeCChHHHH
Confidence 4667764 58999999998654555544332 34444433222222 233444577898885 44544432 33
Q ss_pred HHHHHHhhhc-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14499 197 SYFEWVQNLS-----N-LLWTEQEINLRLNNIICNAFDAIWELANTKKV 239 (262)
Q Consensus 197 s~~E~~~~~~-----~-~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~ 239 (262)
.-.|++.... + +..+-.-++.++.+. ...+.+++..|++.|.
T Consensus 147 ~LrelL~~~~Ig~I~GIlnGT~nyilt~m~~~-g~~f~~~l~eAq~lGy 194 (444)
T 3mtj_A 147 ALREGLTANRIEWLAGIINGTSNFILSEMRDK-GAAFDDVLKEAQRLGY 194 (444)
T ss_dssp HHHTTTTTSCEEEEEEECCHHHHHHHHHHHHH-CCCHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCceEEEEEcCCcccccccCCCC-CCCHHHHHHHHHHcCC
Confidence 3333332100 0 011122334444332 3468889999988774
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00044 Score=61.38 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++. .| +++++|+|.|.+|++++..|.+.|.+|+ |+++ +.++..++. +.+
T Consensus 106 ~~Gf~~~L~~----~~----~k~vlvlGaGGaaraia~~L~~~G~~v~-V~nR----------t~~ka~~la-~~~---- 161 (269)
T 3phh_A 106 ALGFYLSLKQ----KN----YQNALILGAGGSAKALACELKKQGLQVS-VLNR----------SSRGLDFFQ-RLG---- 161 (269)
T ss_dssp HHHHHHHCC-----------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS----------SCTTHHHHH-HHT----
T ss_pred HHHHHHHHHH----cC----CCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC----------CHHHHHHHH-HCC----
Confidence 6677666653 23 8999999999999999999999997766 7763 233333333 222
Q ss_pred CCCceecCCCccccccCceEEeeCCccCc-----ccccchh-cc-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQ-----ITINNAN-NV-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~-----it~e~a~-~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
.+..+ .+++- ++||+|-|++.+. +..+-.. .+ +..+|++-.-.|-|+ ..+..+++|+.+++.
T Consensus 162 ---~~~~~-~~~l~--~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P~T~-ll~~A~~~G~~~~~G 230 (269)
T 3phh_A 162 ---CDCFM-EPPKS--AFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFLTP-FLSLAKELKTPFQDG 230 (269)
T ss_dssp ---CEEES-SCCSS--CCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSSCCH-HHHHHHHTTCCEECS
T ss_pred ---CeEec-HHHhc--cCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCCchH-HHHHHHHCcCEEECC
Confidence 12222 23332 8999999987653 3222111 23 356899999999444 556668999877643
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.3e-05 Score=67.93 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=100.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.+-++|.|+|+|++|..+++.|.+.|+.|+ +.| .+.+++.++.+. +.+..++..+++ .+|
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~-~~d----------r~~~~~~~l~~~--------g~~~~~~~~~~~-~~a 78 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVT-VWN----------RTLSKCDELVEH--------GASVCESPAEVI-KKC 78 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSGGGGHHHHHT--------TCEECSSHHHHH-HHC
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHC--------CCeEcCCHHHHH-HhC
Confidence 345799999999999999999999999887 667 455555454432 222233234444 479
Q ss_pred eEEeeCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhHH---------
Q psy14499 136 DILIPAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIV--------- 196 (262)
Q Consensus 136 DIlipaa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi~--------- 196 (262)
|++|-|.+......+. ...+ +.++|+...+.+. +.+..+.+.++|+.++.-.+. |+...
T Consensus 79 Dvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~--g~~~~a~~g~l~i~ 156 (310)
T 3doj_A 79 KYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVS--GSKKPAEDGQLIIL 156 (310)
T ss_dssp SEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE--CCHHHHHHTCEEEE
T ss_pred CEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCC--CChhHHhcCCeEEE
Confidence 9999998754222222 2233 4568888776543 344556778899988743332 32211
Q ss_pred -----HHHHHHhh----hc----CC-CCCHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Q psy14499 197 -----SYFEWVQN----LS----NL-LWTEQEINLR----LNNIICNAFDAIWELANTKKVSLRTAAFIIG 249 (262)
Q Consensus 197 -----s~~E~~~~----~~----~~-~~~~~~v~~~----l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a 249 (262)
..++.++. .. .. .....+.... +...+...+.+.+..+++.|+++.+....+.
T Consensus 157 ~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~ 227 (310)
T 3doj_A 157 AAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILD 227 (310)
T ss_dssp EEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12222221 11 00 0111222222 2222334567888888999999887766554
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.76 E-value=5.6e-05 Score=67.82 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|++..- .+ ..+..++.++++ .+
T Consensus 119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~-----~~------------------~~~~~~~l~ell-~~ 173 (290)
T 3gvx_A 119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVI-AYTRSSVD-----QN------------------VDVISESPADLF-RQ 173 (290)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCEEE-EECSSCCC-----TT------------------CSEECSSHHHHH-HH
T ss_pred eeecchheeeccCchhHHHHHHHHhhCcEEE-EEeccccc-----cc------------------cccccCChHHHh-hc
Confidence 5899999999999999999999999999998 44532100 00 011222244555 48
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
||+++-|.+. ++++.+....++ ..+++.-+.+++ . .+..+.|++.++.
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 229 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDV 229 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccce
Confidence 9999988763 456666666664 568999998876 3 4456888887765
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.76 E-value=2e-05 Score=70.30 Aligned_cols=106 Identities=14% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
.++|.|+|+|++|+.+++.|.+.|++|+ +.| .+.+++.++.+. +.+..++.+++.. +|+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~-~~d----------r~~~~~~~~~~~--------g~~~~~~~~~~~~--aDv 73 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVT-VYD----------IRIEAMTPLAEA--------GATLADSVADVAA--ADL 73 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEE-EEC----------SSTTTSHHHHHT--------TCEECSSHHHHTT--SSE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHC--------CCEEcCCHHHHHh--CCE
Confidence 4689999999999999999999999987 667 344444444432 2233332455664 999
Q ss_pred EeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
+|.|.+......+. .+.+ +.++|+...+.+. +.+..+.+.++|+.++
T Consensus 74 vi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~ 127 (296)
T 3qha_A 74 IHITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV 127 (296)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred EEEECCChHHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99998754322222 2223 3568888777653 3445567778899877
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.75 E-value=8.6e-05 Score=71.17 Aligned_cols=176 Identities=15% Similarity=0.157 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~ 134 (262)
..++|.|+|+|++|..+|+.|.+.|++|+ +.| .+.+++.++.+... . +. .....++.+++.. .+
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~g~-~-g~-~i~~~~s~~e~v~~l~~ 68 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVC-AFN----------RTVSKVDDFLANEA-K-GT-KVVGAQSLKEMVSKLKK 68 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSTHHHHHHHHTTT-T-TS-SCEECSSHHHHHHTBCS
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHhccc-C-CC-ceeccCCHHHHHhhccC
Confidence 44689999999999999999999999987 767 56777766655421 0 00 1111122444443 26
Q ss_pred ceEEeeCCccCcccccc----hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH------------
Q psy14499 135 CDILIPAAIEDQITINN----ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI------------ 195 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~----a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi------------ 195 (262)
+|+++-|-+.+....+. .+.+ +.++|+...|... +.+..+.|.++|+.++.-.++ ||..
T Consensus 69 aDvVil~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVs--Gg~~gA~~G~~im~GG 146 (484)
T 4gwg_A 69 PRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVS--GGEEGARYGPSLMPGG 146 (484)
T ss_dssp SCEEEECSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE--SHHHHHHHCCEEEEEE
T ss_pred CCEEEEecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCcc--CCHHHHhcCCeeecCC
Confidence 99999988775333333 3333 4679999999875 455557789999988754332 3331
Q ss_pred -HHHHHHHhh----hc-CC-------CCC--------HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHH
Q psy14499 196 -VSYFEWVQN----LS-NL-------LWT--------EQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFII 248 (262)
Q Consensus 196 -~s~~E~~~~----~~-~~-------~~~--------~~~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~~ 248 (262)
-..++.++. .. .. .|- -.-+...++..+-..+.+.+..+++ .|+++.+.+.+.
T Consensus 147 ~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~ 221 (484)
T 4gwg_A 147 NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAF 221 (484)
T ss_dssp CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 111222221 11 01 121 1124455667777888899999998 999988776654
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00036 Score=63.62 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.+++|.|+|+|++|+.+|+.|..+|.+|+ +.|.+. +-.. +.....+.++++
T Consensus 159 ~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~-~~dr~~-----~~~~------------------g~~~~~~l~ell- 213 (333)
T 3ba1_A 159 TTKFSGKRVGIIGLGRIGLAVAERAEAFDCPIS-YFSRSK-----KPNT------------------NYTYYGSVVELA- 213 (333)
T ss_dssp CCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEE-EECSSC-----CTTC------------------CSEEESCHHHHH-
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECCCc-----hhcc------------------CceecCCHHHHH-
Confidence 457899999999999999999999999999987 555321 0000 111122234555
Q ss_pred cCceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++|+++.|.+.+ +++.+....++ ..+++..+.++. . .+..+.|.+.++.
T Consensus 214 ~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ 271 (333)
T 3ba1_A 214 SNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLG 271 (333)
T ss_dssp HTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSC
T ss_pred hcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCe
Confidence 4899999987653 44444444553 558888888876 3 4556778776664
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=68.58 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=66.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+..+.|++|+|+|+|.||+.+++.|..+|++|+ ++| .++.++....+. | ....+ .++++
T Consensus 269 ~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Vi-v~d----------~~~~~~~~A~~~-G-------a~~~~-l~e~l- 327 (494)
T 3ce6_A 269 DALIGGKKVLICGYGDVGKGCAEAMKGQGARVS-VTE----------IDPINALQAMME-G-------FDVVT-VEEAI- 327 (494)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT-T-------CEECC-HHHHG-
T ss_pred CCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc-C-------CEEec-HHHHH-
Confidence 557899999999999999999999999999987 777 567665554432 2 22222 34454
Q ss_pred cCceEEeeCCcc-CcccccchhccC-ceEEEecCCCCC
Q psy14499 133 IPCDILIPAAIE-DQITINNANNVT-AKIILEGANGPT 168 (262)
Q Consensus 133 ~~~DIlipaa~~-~~it~e~a~~~~-~kiIve~AN~p~ 168 (262)
..+|+++.|+.. ++++.+....++ .-+|+.-+..+.
T Consensus 328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGG
T ss_pred hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCC
Confidence 489999999864 556656666664 335555555543
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00054 Score=61.64 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=89.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|++.. +. + . ....+.++++ ..
T Consensus 121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~dr~~~---~~--------------~----~---~~~~~l~ell-~~ 174 (303)
T 1qp8_A 121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVR-GFSRTPK---EG--------------P----W---RFTNSLEEAL-RE 174 (303)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEE-EECSSCC---CS--------------S----S---CCBSCSHHHH-TT
T ss_pred CCCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCCcc---cc--------------C----c---ccCCCHHHHH-hh
Confidence 6899999999999999999999999999987 5554221 00 1 0 0111245566 48
Q ss_pred ceEEeeCCccC-----cccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe-EeccccccchhhHHHHHHHHh--
Q psy14499 135 CDILIPAAIED-----QITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII-LAPDVITNAGGVIVSYFEWVQ-- 203 (262)
Q Consensus 135 ~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~-~iPD~~aN~GGvi~s~~E~~~-- 203 (262)
||+++-|.+.+ +++.+....++ ..+++.-+.+++ .. +..+.|++..|. ..-|+....+.... ...+.+
T Consensus 175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~-~~~L~~~~ 253 (303)
T 1qp8_A 175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAK-DAEFFSLP 253 (303)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGG-GHHHHTST
T ss_pred CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCC-CChhhcCC
Confidence 99999887644 45555566664 568999999876 33 356778877664 22343311222211 122222
Q ss_pred h---hcCCCCC--HHHHHHHHHHHHHHHHHHHH
Q psy14499 204 N---LSNLLWT--EQEINLRLNNIICNAFDAIW 231 (262)
Q Consensus 204 ~---~~~~~~~--~~~v~~~l~~~~~~~~~~v~ 231 (262)
| .+|..|. .++..+++.+...+++.+.+
T Consensus 254 nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~ 286 (303)
T 1qp8_A 254 NVVATPWVAGGYGNERVWRQMVMEAVRNLITYA 286 (303)
T ss_dssp TEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2 2355553 45555555555455555443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00061 Score=63.75 Aligned_cols=106 Identities=13% Similarity=0.240 Sum_probs=72.7
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|+++.|+|+|++|+.+|+.|..+|++|+ +.|.... . ..+ +.+..++.++++
T Consensus 140 ~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~-~~d~~~~------~----------~~~------~~~~~~~l~ell- 195 (404)
T 1sc6_A 140 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVY-FYDIENK------L----------PLG------NATQVQHLSDLL- 195 (404)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC------C----------CCT------TCEECSCHHHHH-
T ss_pred ccccCCCEEEEEeECHHHHHHHHHHHHCCCEEE-EEcCCch------h----------ccC------CceecCCHHHHH-
Confidence 457999999999999999999999999999987 5553210 0 001 122222245566
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
..||+++-|.+. ++++.+....++ ..+++..+-+++ .. +..+.|++..+.
T Consensus 196 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 196 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred hcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 479999988765 456666666664 568899998886 43 345777766553
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00027 Score=68.30 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.| +.- +.+.. .+.| ....+ .++++
T Consensus 137 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~-~~d-------~~~-~~~~a----~~~g-------~~~~~-l~e~~- 194 (529)
T 1ygy_A 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVV-AYD-------PYV-SPARA----AQLG-------IELLS-LDDLL- 194 (529)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC-------TTS-CHHHH----HHHT-------CEECC-HHHHH-
T ss_pred ccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEC-------CCC-ChhHH----HhcC-------cEEcC-HHHHH-
Confidence 457899999999999999999999999999987 444 321 22221 1112 22222 44555
Q ss_pred cCceEEeeCCccC-----cccccchhccC-ceEEEecCCCCCCHH--HHHHHHHCCC
Q psy14499 133 IPCDILIPAAIED-----QITINNANNVT-AKIILEGANGPTTTE--ADDILRDKGI 181 (262)
Q Consensus 133 ~~~DIlipaa~~~-----~it~e~a~~~~-~kiIve~AN~p~t~e--a~~~l~~rgi 181 (262)
.+||+++-|.+.. +++.+....++ ..+|+.-+.+++-.+ ..+.|.+..|
T Consensus 195 ~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i 251 (529)
T 1ygy_A 195 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251 (529)
T ss_dssp HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSE
T ss_pred hcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCc
Confidence 4899999997654 45554555563 568888888876333 3466766544
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=9.9e-05 Score=70.56 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=105.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc-
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI- 133 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~- 133 (262)
.+..++|.|+|.|++|+.+|+.|.+.|..|+ +.| .+.+++.++.++.+. ++....++++++...
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~-v~~----------r~~~~~~~l~~~~~~----~gi~~~~s~~e~v~~l 76 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVS-IFN----------RSREKTEEVIAENPG----KKLVPYYTVKEFVESL 76 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEE-EEC----------SSHHHHHHHHHHSTT----SCEEECSSHHHHHHTB
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHhhCCC----CCeEEeCCHHHHHhCC
Confidence 4677899999999999999999999999876 666 467777666654320 122222223444431
Q ss_pred -CceEEeeCCccCcccccchh----cc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH----------
Q psy14499 134 -PCDILIPAAIEDQITINNAN----NV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI---------- 195 (262)
Q Consensus 134 -~~DIlipaa~~~~it~e~a~----~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi---------- 195 (262)
++|+++-|-+.+....+.+. .+ +.++|+..+|+.. +.+..+.|.++|+.+++- ..+||..
T Consensus 77 ~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~--pv~gg~~~a~~g~~i~~ 154 (480)
T 2zyd_A 77 ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGT--GVSGGEEGALKGPSIMP 154 (480)
T ss_dssp CSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCC--ccccCHhHHhcCCeEEe
Confidence 49999999877533333333 33 3569999999874 345567788889988743 2334332
Q ss_pred ---HHHHHHHhh----hcC--------CCCC----HH----HHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHH
Q psy14499 196 ---VSYFEWVQN----LSN--------LLWT----EQ----EINLRLNNIICNAFDAIWELANT-KKVSLRTAAFII 248 (262)
Q Consensus 196 ---~s~~E~~~~----~~~--------~~~~----~~----~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~~ 248 (262)
-..++.++. ... ..|- .. -+...+...+.+.+.+.+..+++ .|+++.+...+.
T Consensus 155 gg~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~ 231 (480)
T 2zyd_A 155 GGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTF 231 (480)
T ss_dssp ESCHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 112222221 111 1121 11 12333445556777778888888 699887766444
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00052 Score=63.93 Aligned_cols=110 Identities=14% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC--CCcccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN--DSKEFW 131 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~--~~~~il 131 (262)
++.+++|+|+|+|.+|+.+++.|..+|+ +|+ ++| -+.+++.++.++.| ...++ +..+.+
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~-v~~----------r~~~ra~~la~~~g-------~~~~~~~~l~~~l 225 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVL-VAN----------RTYERAVELARDLG-------GEAVRFDELVDHL 225 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEE-EEC----------SSHHHHHHHHHHHT-------CEECCGGGHHHHH
T ss_pred cccCCEEEEEChHHHHHHHHHHHHHCCCCEEE-EEe----------CCHHHHHHHHHHcC-------CceecHHhHHHHh
Confidence 5789999999999999999999999998 766 767 35555544444433 11111 122333
Q ss_pred ccCceEEeeCCcc--Ccccccchhc-c------CceEEEecCCCCC--CHHHHHHHHHCCCeE--eccc
Q psy14499 132 SIPCDILIPAAIE--DQITINNANN-V------TAKIILEGANGPT--TTEADDILRDKGIIL--APDV 187 (262)
Q Consensus 132 ~~~~DIlipaa~~--~~it~e~a~~-~------~~kiIve~AN~p~--t~ea~~~l~~rgi~~--iPD~ 187 (262)
.++||+|.|+.. .+++.+.... + +..++++.+. |. +|+. ..-.|+.+ +||+
T Consensus 226 -~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~-P~~i~~~l---~~l~~v~l~d~d~l 289 (404)
T 1gpj_A 226 -ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN-PRDVEEGV---ENIEDVEVRTIDDL 289 (404)
T ss_dssp -HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTTG---GGSTTEEEEEHHHH
T ss_pred -cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC-CCCCCccc---cccCCeEEEeHhhH
Confidence 489999999864 3344455544 2 3457888887 53 5442 22356666 5555
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00023 Score=64.01 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
+++. ....++|.|+|+|++|+..++.|.+. |.+-|.|.| .+.++..++.++.+. ..+..++.+
T Consensus 128 ~~la-~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~d----------r~~~~~~~l~~~~~~-----~~~~~~~~~ 191 (312)
T 2i99_A 128 KFLK-PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWN----------RTKENAEKFADTVQG-----EVRVCSSVQ 191 (312)
T ss_dssp HHHS-CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEEC----------SSHHHHHHHHHHSSS-----CCEECSSHH
T ss_pred HHhC-CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEc----------CCHHHHHHHHHHhhC-----CeEEeCCHH
Confidence 4443 45778999999999999999999775 874455877 577777777665331 122223234
Q ss_pred cccccCceEEeeCCcc--Ccccccchhcc-CceEEEe-cCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 129 EFWSIPCDILIPAAIE--DQITINNANNV-TAKIILE-GANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 129 ~il~~~~DIlipaa~~--~~it~e~a~~~-~~kiIve-~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
+.+ .++||++-|++. .++.+ ..+ ..++|+. +.+.|-..|..+.+.++|+.++-+
T Consensus 192 e~v-~~aDiVi~atp~~~~v~~~---~~l~~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD~ 249 (312)
T 2i99_A 192 EAV-AGADVIITVTLATEPILFG---EWVKPGAHINAVGASRPDWRELDDELMKEAVLYVDS 249 (312)
T ss_dssp HHH-TTCSEEEECCCCSSCCBCG---GGSCTTCEEEECCCCSTTCCSBCHHHHHHSEEEESC
T ss_pred HHH-hcCCEEEEEeCCCCcccCH---HHcCCCcEEEeCCCCCCCceeccHHHHhcCEEEECC
Confidence 444 479999999864 22222 223 2445555 677776666666778888766643
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.8e-05 Score=64.52 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+++.|.+.|..+|.++| .+.+++.+..++.+ ....++.++++ .
T Consensus 6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~----------~~~~~~~~~~~~~g-------~~~~~~~~~~~-~ 67 (266)
T 3d1l_A 6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYS----------RTEESARELAQKVE-------AEYTTDLAEVN-P 67 (266)
T ss_dssp -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEEC----------SSHHHHHHHHHHTT-------CEEESCGGGSC-S
T ss_pred cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEe----------CCHHHHHHHHHHcC-------CceeCCHHHHh-c
Confidence 345567999999999999999999999998666888 46777666555432 22222244454 3
Q ss_pred CceEEeeCCccCcccccchhcc-----CceEEEecCCCCC
Q psy14499 134 PCDILIPAAIEDQITINNANNV-----TAKIILEGANGPT 168 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~ 168 (262)
++|+++.|.+.+.+ .+.+..+ +.++|+..+++..
T Consensus 68 ~~Dvvi~av~~~~~-~~v~~~l~~~~~~~~ivv~~s~~~~ 106 (266)
T 3d1l_A 68 YAKLYIVSLKDSAF-AELLQGIVEGKREEALMVHTAGSIP 106 (266)
T ss_dssp CCSEEEECCCHHHH-HHHHHHHHTTCCTTCEEEECCTTSC
T ss_pred CCCEEEEecCHHHH-HHHHHHHHhhcCCCcEEEECCCCCc
Confidence 89999999987644 4333332 3568888887754
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00029 Score=63.87 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|++. |.+.. ..++++ .+.+. .+ .++++
T Consensus 134 ~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~-dr~~~--~~~~~~---------------~~~~~--~~-l~ell- 191 (315)
T 3pp8_A 134 EYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCW-SRSRK--SWPGVE---------------SYVGR--EE-LRAFL- 191 (315)
T ss_dssp CCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEE-ESSCC--CCTTCE---------------EEESH--HH-HHHHH-
T ss_pred CCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEE-cCCch--hhhhhh---------------hhccc--CC-HHHHH-
Confidence 34689999999999999999999999999999854 42111 001110 00000 11 34555
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.++||++-|.+. ++++.+....++ ..+++..+.+++ . ....+.|++..|.
T Consensus 192 ~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ 249 (315)
T 3pp8_A 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLK 249 (315)
T ss_dssp HTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCcc
Confidence 489999988653 466666666674 669999999986 3 4446888777665
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.001 Score=62.86 Aligned_cols=126 Identities=18% Similarity=0.213 Sum_probs=73.9
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC----------CC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD----------FN 119 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~----------~~ 119 (262)
+.+++...-++|+|+|.|.||..+|..|.+ |..|+ +.| .|.+++.++.+..-.+.. ..
T Consensus 28 ~~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~-~~D----------~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~ 95 (432)
T 3pid_A 28 QQMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVV-ALD----------IVQAKVDMLNQKISPIVDKEIQEYLAEKPL 95 (432)
T ss_dssp -------CCCEEEEECCSHHHHHHHHHHHT-TSEEE-EEC----------SCHHHHHHHHTTCCSSCCHHHHHHHHHSCC
T ss_pred cccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEE-EEe----------cCHHHhhHHhccCCccccccHHHHHhhccC
Confidence 445566667899999999999999999988 99988 667 677766655442111100 00
Q ss_pred CceecCCCccccccCceEEeeCCccCccc--------------ccchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCe
Q psy14499 120 EGEKINDSKEFWSIPCDILIPAAIEDQIT--------------INNANNV-TAKIILEGANGPT--TTEADDILRDKGII 182 (262)
Q Consensus 120 ~~~~~~~~~~il~~~~DIlipaa~~~~it--------------~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~ 182 (262)
+.+..++..+.+ .+||++|.|.+++.-. .+.++ + +..+|+.-.-.|. |.+..+.+.+.++.
T Consensus 96 ~l~~ttd~~ea~-~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v~ 173 (432)
T 3pid_A 96 NFRATTDKHDAY-RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNVI 173 (432)
T ss_dssp CEEEESCHHHHH-TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCEE
T ss_pred CeEEEcCHHHHH-hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccEe
Confidence 111112122333 4899999998775311 11122 3 2345554444443 46666778888999
Q ss_pred Eeccccc
Q psy14499 183 LAPDVIT 189 (262)
Q Consensus 183 ~iPD~~a 189 (262)
+.|.++.
T Consensus 174 ~sPe~~~ 180 (432)
T 3pid_A 174 FSPEFLR 180 (432)
T ss_dssp ECCCCCC
T ss_pred ecCccCC
Confidence 9998864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=97.66 E-value=8.3e-05 Score=64.42 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=60.3
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHH--------------HHHHHHhcCCccC
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK--------------LQKYVTFTRSIKD 117 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~--------------l~~~~~~~g~~~~ 117 (262)
...++..++|.|+|+|++|+.+|+.|.+.|..|+ +.| .+.++ +.++.++.+
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVT-IGT----------RDPKATLARAEPDAMGAPPFSQWLPEHP---- 77 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHTCC-------CCHHHHGGGST----
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEE-EEe----------CChhhhhhhhhhhhhcchhhhHHHhhcC----
Confidence 3557899999999999999999999999999987 667 34444 333332221
Q ss_pred CCCceecCCCccccccCceEEeeCCccCcccc---cc-hhccCceEEEecCCC
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITI---NN-ANNVTAKIILEGANG 166 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it~---e~-a~~~~~kiIve~AN~ 166 (262)
... ..+..+.+ .+||++|.|.+...+.. +. .+.+.-++|+..+|+
T Consensus 78 --~~~-~~~~~e~~-~~aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~ 126 (245)
T 3dtt_A 78 --HVH-LAAFADVA-AGAELVVNATEGASSIAALTAAGAENLAGKILVDIANP 126 (245)
T ss_dssp --TCE-EEEHHHHH-HHCSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred --cee-ccCHHHHH-hcCCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence 111 11133444 47999999988654432 11 223467799999985
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.65 E-value=4.6e-05 Score=67.29 Aligned_cols=170 Identities=14% Similarity=0.132 Sum_probs=97.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|..+++.|.+.|+.|+ +.| .+.+++.+..+. +....++..++. .+||++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~-~~d----------r~~~~~~~~~~~--------g~~~~~~~~~~~-~~advv 61 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVT-VWN----------RNPAKCAPLVAL--------GARQASSPAEVC-AACDIT 61 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEE-EEC----------SSGGGGHHHHHH--------TCEECSCHHHHH-HHCSEE
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHC--------CCeecCCHHHHH-HcCCEE
Confidence 479999999999999999999999887 667 455555444443 122222234444 479999
Q ss_pred eeCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH-------------
Q psy14499 139 IPAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI------------- 195 (262)
Q Consensus 139 ipaa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi------------- 195 (262)
+.|.+......+. .+.+ +.++|+...+.+. +.+..+.+.++|+.++.-.+. |+..
T Consensus 62 i~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~--g~~~~a~~g~l~~~~gg 139 (287)
T 3pdu_A 62 IAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVS--GTKKPAEDGTLIILAAG 139 (287)
T ss_dssp EECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE--CCHHHHHHTCEEEEEEE
T ss_pred EEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCcc--CCHHHHhcCCEEEEEeC
Confidence 9998765222222 2333 4567887777543 234456778889887633222 2221
Q ss_pred -HHHHHHHhh----hc----CCC-CCHHHHH----HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Q psy14499 196 -VSYFEWVQN----LS----NLL-WTEQEIN----LRLNNIICNAFDAIWELANTKKVSLRTAAFIIGC 250 (262)
Q Consensus 196 -~s~~E~~~~----~~----~~~-~~~~~v~----~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~ 250 (262)
-..++.++. .. ... ....+.. ..+...+...+.+.+..+++.|+++.+....+..
T Consensus 140 ~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~ 208 (287)
T 3pdu_A 140 DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDA 208 (287)
T ss_dssp CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 112222221 10 000 1111111 2222333455677888889999998877665543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=56.46 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=59.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
+++|+|+|.|.+|+.+++.|.+.|++ |.++| .+.+++.++.++.+. .....++..+.+ .++|+
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~----------r~~~~~~~~a~~~~~-----~~~~~~~~~~~~-~~~Di 83 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYK-VTVAG----------RNIDHVRAFAEKYEY-----EYVLINDIDSLI-KNNDV 83 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCE-EEEEE----------SCHHHHHHHHHHHTC-----EEEECSCHHHHH-HTCSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEc----------CCHHHHHHHHHHhCC-----ceEeecCHHHHh-cCCCE
Confidence 88999999999999999999999999 66888 577777666555431 111122122333 48999
Q ss_pred EeeCCccC--cccccchhccCceEEEecCC
Q psy14499 138 LIPAAIED--QITINNANNVTAKIILEGAN 165 (262)
Q Consensus 138 lipaa~~~--~it~e~a~~~~~kiIve~AN 165 (262)
+|.|++.. .++.+... +.++|++-++
T Consensus 84 vi~at~~~~~~~~~~~l~--~g~~vid~~~ 111 (144)
T 3oj0_A 84 IITATSSKTPIVEERSLM--PGKLFIDLGN 111 (144)
T ss_dssp EEECSCCSSCSBCGGGCC--TTCEEEECCS
T ss_pred EEEeCCCCCcEeeHHHcC--CCCEEEEccC
Confidence 99998754 22222211 2457777666
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=65.46 Aligned_cols=128 Identities=15% Similarity=0.164 Sum_probs=84.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~D 136 (262)
.||+|+|+|++|+..++.|.+. ++++++|+| .|.+++.+..++.+. ...+++.++++. .++|
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~~~~~~~------~~~~~~~~~ll~~~~~D 66 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISD----------VREDRLREMKEKLGV------EKAYKDPHELIEDPNVD 66 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEEC----------SCHHHHHHHHHHHTC------SEEESSHHHHHHCTTCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEEC----------CCHHHHHHHHHHhCC------CceeCCHHHHhcCCCCC
Confidence 6899999999999999999874 799999999 678877776665431 123343566664 4899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 138 (344)
T 3ezy_A 67 AVLVCSSTN-THSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVE 138 (344)
T ss_dssp EEEECSCGG-GHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHH
T ss_pred EEEEcCCCc-chHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHH
Confidence 999999754 333333332 445777752222223333 444678988877666655555555566654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00058 Score=61.82 Aligned_cols=130 Identities=11% Similarity=0.074 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCC---HHHHHHHHHhcCC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFN---IPKLQKYVTFTRS 114 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD---~~~l~~~~~~~g~ 114 (262)
++|...+++ ..+.++++++++|.|.|.+|++++..|.+.|++-|.|+++ + .++..++.++.+.
T Consensus 132 ~~Gf~~~L~----~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nR----------t~~~~~~a~~la~~~~~ 197 (312)
T 3t4e_A 132 GTGHIRAIK----ESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNR----------KDDFFEKAVAFAKRVNE 197 (312)
T ss_dssp HHHHHHHHH----HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEEC----------SSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEEC----------CCchHHHHHHHHHHhhh
Confidence 566666654 4578899999999999999999999999999943447773 4 5555554432211
Q ss_pred ccCCCC-ceecCCCccc---c--ccCceEEeeCCccCcc--cccc----hhcc-CceEEEecCCCCC-CHHHHHHHHHCC
Q psy14499 115 IKDFNE-GEKINDSKEF---W--SIPCDILIPAAIEDQI--TINN----ANNV-TAKIILEGANGPT-TTEADDILRDKG 180 (262)
Q Consensus 115 ~~~~~~-~~~~~~~~~i---l--~~~~DIlipaa~~~~i--t~e~----a~~~-~~kiIve~AN~p~-t~ea~~~l~~rg 180 (262)
. ++. ...++ .+++ . -.++||+|.|++.+.- +..+ ...+ +..+|++-..+|. ||=. +.-+++|
T Consensus 198 ~--~~~~v~~~~-~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll-~~A~~~G 273 (312)
T 3t4e_A 198 N--TDCVVTVTD-LADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLL-QQAQQAG 273 (312)
T ss_dssp H--SSCEEEEEE-TTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHHH-HHHHHTT
T ss_pred c--cCcceEEec-hHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHHH-HHHHHCC
Confidence 0 100 11122 1221 1 1379999999886542 2222 1234 4568999999997 5544 4447899
Q ss_pred CeEec
Q psy14499 181 IILAP 185 (262)
Q Consensus 181 i~~iP 185 (262)
..+++
T Consensus 274 ~~~~~ 278 (312)
T 3t4e_A 274 CKTID 278 (312)
T ss_dssp CEEEC
T ss_pred CeEEC
Confidence 87763
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00038 Score=63.21 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=84.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~ 134 (262)
+..||+|+|+|++|+..++.|.+. ++++++|+| .|.+++.+..++.+- ..+++.++++ +.+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d----------~~~~~~~~~~~~~g~-------~~~~~~~~~l~~~~ 66 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYS----------RTEDKREKFGKRYNC-------AGDATMEALLARED 66 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEC----------SSHHHHHHHHHHHTC-------CCCSSHHHHHHCSS
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEEC----------CCHHHHHHHHHHcCC-------CCcCCHHHHhcCCC
Confidence 457999999999999999999886 899999999 678877776665431 1133345666 468
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~ 140 (354)
T 3db2_A 67 VEMVIITVPND-KHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMID 140 (354)
T ss_dssp CCEEEECSCTT-SHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHH
T ss_pred CCEEEEeCChH-HHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHh
Confidence 99999998754 344444332 445888852222223443 334678888876665544444444445444
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=59.02 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc--
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-- 131 (262)
++.+.+|+|+|+|.+|+.+++.|.+. |+.|+ +.| .|++++..+.+..-.+. +.+. ++.+.+.
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~-vid----------~~~~~~~~~~~~g~~~~-~gd~---~~~~~l~~~ 100 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISL-GIE----------IREEAAQQHRSEGRNVI-SGDA---TDPDFWERI 100 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEE-EEE----------SCHHHHHHHHHTTCCEE-ECCT---TCHHHHHTB
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEE-EEE----------CCHHHHHHHHHCCCCEE-EcCC---CCHHHHHhc
Confidence 56688999999999999999999998 99988 666 47777666554321110 0011 1011111
Q ss_pred --ccCceEEeeCCccCccccc---chhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 132 --SIPCDILIPAAIEDQITIN---NANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~e---~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
-.++|++|-|+..+..+.. .++++ ..++|+-. | +++..+.|++.|+..+
T Consensus 101 ~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~---~~~~~~~l~~~G~~~v 156 (183)
T 3c85_A 101 LDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA-E---YPDQLEGLLESGVDAA 156 (183)
T ss_dssp CSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE-S---SHHHHHHHHHHTCSEE
T ss_pred cCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE-C---CHHHHHHHHHcCCCEE
Confidence 1379999998875433322 23333 34566542 2 4666677888887543
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00054 Score=61.81 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=67.1
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|++. +-.. + . ..+.++++ .
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~-~~d~~~-----~~~~-------------~-~------~~~l~ell-~ 192 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVV-YHARTP-----KPLP-------------Y-P------FLSLEELL-K 192 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC-----CSSS-------------S-C------BCCHHHHH-H
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEE-EECCCC-----cccc-------------c-c------cCCHHHHH-h
Confidence 46899999999999999999999999999987 555321 0000 0 0 11134455 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCC
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGI 181 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi 181 (262)
++|+++-|.+. ++++.+....++ ..+++.-+.+++ .. +..+.|+ ..|
T Consensus 193 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i 247 (311)
T 2cuk_A 193 EADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHL 247 (311)
T ss_dssp HCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTS
T ss_pred hCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcC
Confidence 79999988654 445555555664 458888888876 43 3456676 544
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00028 Score=63.18 Aligned_cols=125 Identities=11% Similarity=0.151 Sum_probs=77.3
Q ss_pred CeEEEEcCCHHHHHH-HHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCce
Q psy14499 59 SKISIQGFGNVGSVA-ANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~-a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~D 136 (262)
+||+|+|+|++|+.. ++.|.+.+.++++|+| .|.++..+..++.+.. ..+++.++++. .++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d----------~~~~~~~~~~~~~g~~------~~~~~~~~~l~~~~~D 64 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMS----------TSAERGAAYATENGIG------KSVTSVEELVGDPDVD 64 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEEC----------SCHHHHHHHHHHTTCS------CCBSCHHHHHTCTTCC
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEEC----------CCHHHHHHHHHHcCCC------cccCCHHHHhcCCCCC
Confidence 489999999999997 8777778899999999 5777776666554321 12333456664 4799
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+++-|++... +.+.+... ...+++|- |+ + .+++ +..+++|+.+...+.----..+....++++
T Consensus 65 ~V~i~tp~~~-h~~~~~~al~~Gk~v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~ 136 (332)
T 2glx_A 65 AVYVSTTNEL-HREQTLAAIRAGKHVLCEK---PLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIA 136 (332)
T ss_dssp EEEECSCGGG-HHHHHHHHHHTTCEEEECS---SSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHH
T ss_pred EEEEeCChhH-hHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHH
Confidence 9999997543 33333332 33467753 43 3 3333 334667887765443333333344445544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=55.64 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc---cc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW---SI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il---~~ 133 (262)
++++|+|+|+|.+|+.+++.|.+.|.+|+ +.| .+.+.+.+..+..+. .-+.+ . ..+.+.+. -.
T Consensus 3 ~~m~i~IiG~G~iG~~~a~~L~~~g~~v~-~~d----------~~~~~~~~~~~~~~~-~~~~~-d-~~~~~~l~~~~~~ 68 (140)
T 1lss_A 3 HGMYIIIAGIGRVGYTLAKSLSEKGHDIV-LID----------IDKDICKKASAEIDA-LVING-D-CTKIKTLEDAGIE 68 (140)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHCSS-EEEES-C-TTSHHHHHHTTTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHhcCc-EEEEc-C-CCCHHHHHHcCcc
Confidence 35789999999999999999999999987 556 356665555443221 00000 0 01011111 13
Q ss_pred CceEEeeCCccCcccc---cchhccC-ceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVT-AKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
++|+++-|+..+..+. +.++.++ .++|+ -.|.+. ..+.|++.|+.
T Consensus 69 ~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~-~~~~~~---~~~~l~~~g~~ 117 (140)
T 1lss_A 69 DADMYIAVTGKEEVNLMSSLLAKSYGINKTIA-RISEIE---YKDVFERLGVD 117 (140)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE-ECSSTT---HHHHHHHTTCS
T ss_pred cCCEEEEeeCCchHHHHHHHHHHHcCCCEEEE-EecCHh---HHHHHHHcCCC
Confidence 7999999987543322 2334443 34555 344443 34567788863
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00016 Score=63.83 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
.++|.|+|+|++|+.+++.|.+.|.+|+ +.| .+.+++.++.+. + ....++.++.+ .++|+
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~----------~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D~ 63 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLKEGVTVY-AFD----------LMEANVAAVVAQ-G-------AQACENNQKVA-AASDI 63 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHTT-T-------CEECSSHHHHH-HHCSE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHC-C-------CeecCCHHHHH-hCCCE
Confidence 3689999999999999999999999876 777 466666555443 1 22222233444 37999
Q ss_pred EeeCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 138 LIPAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 138 lipaa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
++.|.+......+. .+.+ ..++|+.-+|+.. ..+..+.+.++|+.++
T Consensus 64 vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~ 120 (301)
T 3cky_A 64 IFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV 120 (301)
T ss_dssp EEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99998653322222 2234 3568888888762 3445567777888876
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00017 Score=56.44 Aligned_cols=106 Identities=11% Similarity=0.136 Sum_probs=64.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----S 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~ 132 (262)
+.++|+|.|+|.+|+.+++.|.+.|++|+ +.| .|++.+.+..+..-.+. +.+. . ..+.+ -
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~-~id----------~~~~~~~~~~~~~~~~~-~gd~---~-~~~~l~~~~~ 68 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVL-AVD----------KSKEKIELLEDEGFDAV-IADP---T-DESFYRSLDL 68 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------SCHHHHHHHHHTTCEEE-ECCT---T-CHHHHHHSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHCCCcEE-ECCC---C-CHHHHHhCCc
Confidence 35689999999999999999999999998 666 47777666654321100 0011 1 11222 1
Q ss_pred cCceEEeeCCccCccc---ccchhccC-ceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIEDQIT---INNANNVT-AKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~~~it---~e~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
.++|++|-|+..+..+ ...++++. .++|+-. + +++-.+.|++.|+.
T Consensus 69 ~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~-~---~~~~~~~l~~~G~~ 118 (141)
T 3llv_A 69 EGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRV-S---SPKKKEEFEEAGAN 118 (141)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEE-S---CGGGHHHHHHTTCS
T ss_pred ccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEE-c---ChhHHHHHHHcCCC
Confidence 3799999988743322 33444443 3344433 2 33445677888874
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=69.15 Aligned_cols=174 Identities=13% Similarity=0.121 Sum_probs=103.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc--Cc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~--~~ 135 (262)
.++|.|+|+|++|+.+++.|.+.|..|+ +.| .+.+++.++.++.+. ++....++.+++... ++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~----~gi~~~~s~~e~v~~l~~a 69 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVA-IYN----------RTTSKTEEVFKEHQD----KNLVFTKTLEEFVGSLEKP 69 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHHTTT----SCEEECSSHHHHHHTBCSS
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEE-EEc----------CCHHHHHHHHHhCcC----CCeEEeCCHHHHHhhccCC
Confidence 4689999999999999999999999875 767 467776666554320 122222224444432 59
Q ss_pred eEEeeCCccCcccccch----hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH-------------
Q psy14499 136 DILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI------------- 195 (262)
Q Consensus 136 DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi------------- 195 (262)
|+++.|.+.+....+.+ +.+ ..++|++.+|+.. +.+..+.+.++|+.+++-. ++||..
T Consensus 70 DvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~p--v~gg~~~a~~g~~i~~gg~ 147 (474)
T 2iz1_A 70 RRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTG--VSGGEKGALLGPSMMPGGQ 147 (474)
T ss_dssp CEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEE--ECSHHHHHHHCCCEEEEEC
T ss_pred CEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCC--CCCChhhhccCCeEEecCC
Confidence 99999988753333332 233 3568999998863 3444566677888877432 233321
Q ss_pred HHHHHHHh----hhcC---------CCCCH--------HHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHH
Q psy14499 196 VSYFEWVQ----NLSN---------LLWTE--------QEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFII 248 (262)
Q Consensus 196 ~s~~E~~~----~~~~---------~~~~~--------~~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~~ 248 (262)
...++.++ .... ..|-. .-+...+...+...+.+.+..+++ .|+++.+...+.
T Consensus 148 ~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~ 222 (474)
T 2iz1_A 148 KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIF 222 (474)
T ss_dssp HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11222222 2111 12211 112333455555677788888888 799987765444
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00058 Score=61.32 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=83.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~D 136 (262)
+||+|+|+|++|+..++.|.+. ++++++|+| .|.+++.+..++.+ .. +++.++++. .++|
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~~D 65 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVAD----------AFPAAAEAIAGAYG-------CE-VRTIDAIEAAADID 65 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEEC----------SSHHHHHHHHHHTT-------CE-ECCHHHHHHCTTCC
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEEC----------CCHHHHHHHHHHhC-------CC-cCCHHHHhcCCCCC
Confidence 6899999999999999999885 899999999 67887777666543 12 333556664 4899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+++-|++.. .+.+.+... ...+++|-.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 66 ~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~ 137 (331)
T 4hkt_A 66 AVVICTPTD-THADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAID 137 (331)
T ss_dssp EEEECSCGG-GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred EEEEeCCch-hHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHH
Confidence 999998654 333333332 445777752111223343 344778988876665555555555555554
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0029 Score=55.98 Aligned_cols=127 Identities=17% Similarity=0.140 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
--+.|...+++ ..+.+ .+++++|+|.|.++++++..|.+.|++-|.|++ -+.++..++.++.+.
T Consensus 102 TD~~G~~~~l~----~~~~~-~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n----------Rt~~ka~~la~~~~~- 165 (271)
T 1npy_A 102 TDYIAIVKLIE----KYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA----------RNVKTGQYLAALYGY- 165 (271)
T ss_dssp HHHHHHHHHHH----HTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC----------SCHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHH----HhCCC-CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCHHHHHHHHHHcCC-
Confidence 35566666664 34554 678999999999999999999999985444877 356666666554321
Q ss_pred cCCCCceecCCCccccccCceEEeeCCccCcccc---c--ch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIEDQITI---N--NA--NNV-TAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~---e--~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
...++. . ..++||+|-|++...... + +. ..+ ..++|++-...|......+.-+++|..+++..
T Consensus 166 ------~~~~~~-~--~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 166 ------AYINSL-E--NQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGA 236 (271)
T ss_dssp ------EEESCC-T--TCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECHH
T ss_pred ------ccchhh-h--cccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCCCEEECCH
Confidence 111101 1 247999999998665321 1 11 123 35689999999863345555688998876443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0012 Score=60.09 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=71.3
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|+|++|+.+|+.|..+|++|+ +.|.+.. +. + ++ + .+..+ .++++
T Consensus 140 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~~---~~-~---------~~------~--~~~~~-l~ell- 195 (333)
T 1dxy_A 140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI-AYDPYPM---KG-D---------HP------D--FDYVS-LEDLF- 195 (333)
T ss_dssp CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC---SS-C---------CT------T--CEECC-HHHHH-
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCcc---hh-h---------Hh------c--cccCC-HHHHH-
Confidence 357899999999999999999999999999988 5553210 00 0 00 0 11122 44555
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CH-HHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TT-EADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~-ea~~~l~~rgi~ 182 (262)
..+|+++-|.+. ++++.+....++ ..+++..+-+++ .. +..+.|++.+|.
T Consensus 196 ~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~ 253 (333)
T 1dxy_A 196 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253 (333)
T ss_dssp HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEE
T ss_pred hcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCcc
Confidence 489999998764 345555556664 557888888875 43 345777777665
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00038 Score=62.69 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
++..||+|+|+|++|+..++.|.+ .++++++|+| .|.++..+..++.+-. ..+++.++++. .
T Consensus 3 m~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~ 66 (330)
T 3e9m_A 3 LDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIAS----------RRLENAQKMAKELAIP------VAYGSYEELCKDE 66 (330)
T ss_dssp CCCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBC----------SSSHHHHHHHHHTTCC------CCBSSHHHHHHCT
T ss_pred CCeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEe----------CCHHHHHHHHHHcCCC------ceeCCHHHHhcCC
Confidence 356799999999999999999988 4789999999 5677776666654321 22333556663 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
++|+++-|++.. .+.+.+... ...+++|-.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~ 141 (330)
T 3e9m_A 67 TIDIIYIPTYNQ-GHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQ 141 (330)
T ss_dssp TCSEEEECCCGG-GHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHh
Confidence 899999998755 334443332 445888752222223443 344678988876665544444444555554
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00025 Score=63.14 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
++.+||+|+|+|++|+. .++.|.+ .++++++|+| .|.+++.+..++.+. ..+++.++++.
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~a~~~~~-------~~~~~~~~ll~- 65 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFT----------PNKVKREKICSDYRI-------MPFDSIESLAK- 65 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEEC----------SCHHHHHHHHHHHTC-------CBCSCHHHHHT-
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEEC----------CCHHHHHHHHHHcCC-------CCcCCHHHHHh-
Confidence 45689999999999996 8888877 5899999999 688887777665542 11333567777
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHH
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFE 200 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E 200 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....+
T Consensus 66 ~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~ 137 (308)
T 3uuw_A 66 KCDCIFLHSSTE-THYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKN 137 (308)
T ss_dssp TCSEEEECCCGG-GHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHH
T ss_pred cCCEEEEeCCcH-hHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHH
Confidence 999999998754 334433332 345777732111123333 444678887765554444443333333
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00023 Score=62.19 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=65.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
+||+|.|+|++|+.+++.+.+.+..++++.|.... . .. +....++.++++ ++||+
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~----------~------~~-------gv~v~~dl~~l~--~~DVv 58 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPK----------A------TT-------PYQQYQHIADVK--GADVA 58 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------------------C-------CSCBCSCTTTCT--TCSEE
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcc----------c------cC-------CCceeCCHHHHh--CCCEE
Confidence 68999999999999999998875599999886432 0 01 222233345555 89999
Q ss_pred eeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHHH----HCCCeEeccccc
Q psy14499 139 IPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDILR----DKGIILAPDVIT 189 (262)
Q Consensus 139 ipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l~----~rgi~~iPD~~a 189 (262)
|+++.++... +++. + +..+|++-. .++++-.+.|+ +.++++.|.|..
T Consensus 59 IDft~p~a~~-~~~~-l~~g~~vVigTT--G~s~e~~~~l~~aa~~~~v~~a~N~S~ 111 (243)
T 3qy9_A 59 IDFSNPNLLF-PLLD-EDFHLPLVVATT--GEKEKLLNKLDELSQNMPVFFSANMSY 111 (243)
T ss_dssp EECSCHHHHH-HHHT-SCCCCCEEECCC--SSHHHHHHHHHHHTTTSEEEECSSCCH
T ss_pred EEeCChHHHH-HHHH-HhcCCceEeCCC--CCCHHHHHHHHHHHhcCCEEEECCccH
Confidence 9999776554 3443 4 345666433 35665444443 345666666644
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00036 Score=63.67 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.++++.|+|+|++|+.+|+.+..+|++|+ ..|. .. . +. ..+. +.+..+ .++++
T Consensus 136 ~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~-~~d~-------~~-~-~~---~~~~--------~~~~~~-l~ell- 192 (334)
T 3kb6_A 136 ARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVL-CYDV-------VK-R-ED---LKEK--------GCVYTS-LDELL- 192 (334)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECS-------SC-C-HH---HHHT--------TCEECC-HHHHH-
T ss_pred cceecCcEEEEECcchHHHHHHHhhcccCceee-ecCC-------cc-c-hh---hhhc--------CceecC-HHHHH-
Confidence 356889999999999999999999999999998 4342 21 1 11 1111 122233 56677
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHH-HHHHHHHCCC
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTE-ADDILRDKGI 181 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~e-a~~~l~~rgi 181 (262)
..|||++-+.+. +.|+.+....++ .-+++.-+-+++ ..+ ..+.|++.-|
T Consensus 193 ~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i 249 (334)
T 3kb6_A 193 KESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKF 249 (334)
T ss_dssp HHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCE
T ss_pred hhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCc
Confidence 479999877653 677778888885 558999999997 444 4577766544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00028 Score=66.14 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-----CC-------cee
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-----NE-------GEK 123 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-----~~-------~~~ 123 (262)
+.+.+|+|+|+|.+|..+++.+..+|++|+ ++| .++.++....+....+... .+ .+.
T Consensus 188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D----------~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e 256 (405)
T 4dio_A 188 VPAAKIFVMGAGVAGLQAIATARRLGAVVS-ATD----------VRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKE 256 (405)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSTTHHHHHHHTTCEECCCCC---------------
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHcCCceeecccccccccccccchhhh
Confidence 578999999999999999999999999877 778 4444444433321111100 00 000
Q ss_pred cCC---------CccccccCceEEeeCCc------cCcccccchhccC-ceEEEecC-----CCCCCHHHHHHHHHCCCe
Q psy14499 124 IND---------SKEFWSIPCDILIPAAI------EDQITINNANNVT-AKIILEGA-----NGPTTTEADDILRDKGII 182 (262)
Q Consensus 124 ~~~---------~~~il~~~~DIlipaa~------~~~it~e~a~~~~-~kiIve~A-----N~p~t~ea~~~l~~rgi~ 182 (262)
+++ ..+.+ .++||+|.|.. ..++|.+.+.+++ ..+|++-| |-.+|.. ...+..+||.
T Consensus 257 ~s~~~~~~~~~~l~e~l-~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~-~~~~~~~GV~ 334 (405)
T 4dio_A 257 MSGEYQVKQAALVAEHI-AKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEA-GKVTEVGGVR 334 (405)
T ss_dssp --CHHHHHHHHHHHHHH-HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCT-TEEEEETTEE
T ss_pred cchhhhhhhHhHHHHHh-cCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCC-CCeEEECCEE
Confidence 110 11122 58999998842 3678999999985 55888776 3333311 1123457777
Q ss_pred Ee
Q psy14499 183 LA 184 (262)
Q Consensus 183 ~i 184 (262)
++
T Consensus 335 ~~ 336 (405)
T 4dio_A 335 IV 336 (405)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00072 Score=60.85 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHH-H-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 56 IINSKISIQGFGNVGSVAANLFF-K-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~-~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
.+..+|+|+|+|++|+..++.|. + .++++++|+| .|.+++.+..++.+. ...+++.++++.
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d----------~~~~~~~~~a~~~g~------~~~~~~~~~~l~~ 69 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACA----------LDSNQLEWAKNELGV------ETTYTNYKDMIDT 69 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEEC----------SCHHHHHHHHHTTCC------SEEESCHHHHHTT
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEec----------CCHHHHHHHHHHhCC------CcccCCHHHHhcC
Confidence 35579999999999999999988 5 4889999999 677777666655431 123333456664
Q ss_pred cCceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHHH---HHHC-CCeEeccccccchhhHHHHHHHH
Q psy14499 133 IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADDI---LRDK-GIILAPDVITNAGGVIVSYFEWV 202 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~~---l~~r-gi~~iPD~~aN~GGvi~s~~E~~ 202 (262)
.++|+++-|++.. .+.+.+... ...+++|- |+ + .+++++ .+++ |+.+...+..---..+....+++
T Consensus 70 ~~~D~V~i~tp~~-~h~~~~~~al~~G~~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i 145 (346)
T 3cea_A 70 ENIDAIFIVAPTP-FHPEMTIYAMNAGLNVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIV 145 (346)
T ss_dssp SCCSEEEECSCGG-GHHHHHHHHHHTTCEEEECS---CCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHH
T ss_pred CCCCEEEEeCChH-hHHHHHHHHHHCCCEEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHH
Confidence 4799999998754 333443332 33466653 43 3 344333 3567 88776544333333333444544
Q ss_pred h
Q psy14499 203 Q 203 (262)
Q Consensus 203 ~ 203 (262)
+
T Consensus 146 ~ 146 (346)
T 3cea_A 146 D 146 (346)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00059 Score=61.60 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=82.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
..||+|+|+|++|+..++.|.+. ++++++|+| .|.+++.+..++.+ ...+++.++++. .++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~a~~~g-------~~~~~~~~~~l~~~~~ 66 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIAD----------PFIEGAQRLAEANG-------AEAVASPDEVFARDDI 66 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEC----------SSHHHHHHHHHTTT-------CEEESSHHHHTTCSCC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEEC----------CCHHHHHHHHHHcC-------CceeCCHHHHhcCCCC
Confidence 36899999999999999999885 899999999 68887777666543 233443556664 589
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
|+++-|++.. .+.+.+... ...+++|-.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~ 139 (344)
T 3euw_A 67 DGIVIGSPTS-THVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVA 139 (344)
T ss_dssp CEEEECSCGG-GHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHH
T ss_pred CEEEEeCCch-hhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHh
Confidence 9999998754 333433332 445777752111123443 334667877765555444444444455544
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=68.44 Aligned_cols=177 Identities=11% Similarity=0.126 Sum_probs=103.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc--Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI--PCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~--~~D 136 (262)
++|.|+|.|++|+.++..|.+.|..|+ +.| .+.+++.+..++.+....-.+....++.+++... ++|
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~-v~d----------r~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aD 70 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFN----------RTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR 70 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCC
Confidence 479999999999999999999999876 767 4677766666543311000011222223444432 699
Q ss_pred EEeeCCccCcccccchhc----c-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH-------------H
Q psy14499 137 ILIPAAIEDQITINNANN----V-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI-------------V 196 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~----~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi-------------~ 196 (262)
+++-|.+...-..+.+.+ + ..++|+...|+.. +.+..+.+.++|+.+++-. .+||.. .
T Consensus 71 vVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~p--v~gg~~~a~~g~~i~~gg~~ 148 (478)
T 1pgj_A 71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG--ISGGEEGARKGPAFFPGGTL 148 (478)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE--EESHHHHHHHCCEEEEEECH
T ss_pred EEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEee--ccCCHHHHhcCCeEeccCCH
Confidence 999998875333333332 3 3568999999864 3445567777888776322 223221 1
Q ss_pred HHHHHHh----hhcC--------CCCC----HHH----HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy14499 197 SYFEWVQ----NLSN--------LLWT----EQE----INLRLNNIICNAFDAIWELANTKKVSLRTAAFII 248 (262)
Q Consensus 197 s~~E~~~----~~~~--------~~~~----~~~----v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~ 248 (262)
..++.++ .... ..|- ... +...+...+...+.+.+..+++.|+++.+.....
T Consensus 149 ~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~ 220 (478)
T 1pgj_A 149 SVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVL 220 (478)
T ss_dssp HHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 1222222 1111 1221 111 1223444445677888888889999987755544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00022 Score=56.24 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=68.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc----c
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS----I 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~----~ 133 (262)
..+|+|+|+|.+|+.+++.|.+.|..|+ +.| .|++.+.++.+..-.+ -+.+. + ..+.+. .
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~-vid----------~~~~~~~~~~~~g~~~-i~gd~---~-~~~~l~~a~i~ 70 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLV-VIE----------TSRTRVDELRERGVRA-VLGNA---A-NEEIMQLAHLE 70 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------SCHHHHHHHHHTTCEE-EESCT---T-SHHHHHHTTGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHcCCCE-EECCC---C-CHHHHHhcCcc
Confidence 3589999999999999999999999998 666 5787776665431110 00011 1 122221 3
Q ss_pred CceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
++|++|-|...+..+. ..++++ ..++|+-.. +++-.+.|++.|+..
T Consensus 71 ~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~----~~~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 71 CAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAH----YDDEVAYITERGANQ 121 (140)
T ss_dssp GCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES----SHHHHHHHHHTTCSE
T ss_pred cCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCCCE
Confidence 7999999887655443 334444 456666442 456678888898753
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=65.10 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|++.. +. + ++ . ....+ .++++ .
T Consensus 142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~~~---~~-~---------~~-~-------~~~~~-l~ell-~ 197 (331)
T 1xdw_A 142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVI-GEDVFEI---KG-I---------ED-Y-------CTQVS-LDEVL-E 197 (331)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCC---CS-C---------TT-T-------CEECC-HHHHH-H
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCcc---HH-H---------Hh-c-------cccCC-HHHHH-h
Confidence 46889999999999999999999999999987 5553210 00 0 00 0 11112 44555 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
++|+++.|.+. ++++.+....++ ..+++.-+-+++ . .+..+.|++.+|.
T Consensus 198 ~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~ 254 (331)
T 1xdw_A 198 KSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLG 254 (331)
T ss_dssp HCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCce
Confidence 89999988654 556666666664 568888888876 3 4446888887765
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00081 Score=60.98 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=81.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHH--------CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFK--------AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~--------~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
+|+..||+|+|+|.+|+.-++.+.. .++++++|+| .|.++..+..++.+- ...++|
T Consensus 22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d----------~~~~~a~~~a~~~g~------~~~y~d 85 (393)
T 4fb5_A 22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAE----------ANAGLAEARAGEFGF------EKATAD 85 (393)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEEC----------C--TTHHHHHHHHTC------SEEESC
T ss_pred CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEEC----------CCHHHHHHHHHHhCC------CeecCC
Confidence 4788999999999999977665543 3789999999 577777676666542 233444
Q ss_pred Ccccc-ccCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHHH---HHCCCeEeccccccchhhHHHHH
Q psy14499 127 SKEFW-SIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDIL---RDKGIILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 127 ~~~il-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~l---~~rgi~~iPD~~aN~GGvi~s~~ 199 (262)
.++++ +.+.|+++=|++. ..+.+.+... ...++||=.=.....|+++++ +++|+.+...+.----..+....
T Consensus 86 ~~ell~~~~iDaV~IatP~-~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k 164 (393)
T 4fb5_A 86 WRALIADPEVDVVSVTTPN-QFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIR 164 (393)
T ss_dssp HHHHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHH
T ss_pred HHHHhcCCCCcEEEECCCh-HHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHH
Confidence 56676 3578999998864 3455544443 445777754333345555444 67888776555544444444444
Q ss_pred HHHh
Q psy14499 200 EWVQ 203 (262)
Q Consensus 200 E~~~ 203 (262)
++++
T Consensus 165 ~~i~ 168 (393)
T 4fb5_A 165 KLVG 168 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00067 Score=61.68 Aligned_cols=130 Identities=9% Similarity=0.115 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 56 IINSKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
++..||+|+|+|.+|+ ..++.|.+. ++++++|+| .|.++..+..++.+ ...+++.++++.
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~a~~~g-------~~~~~~~~~ll~~ 87 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIAS----------RRWDRAKRFTERFG-------GEPVEGYPALLER 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEE----------SSHHHHHHHHHHHC-------SEEEESHHHHHTC
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEc----------CCHHHHHHHHHHcC-------CCCcCCHHHHhcC
Confidence 4568999999999998 788888876 899999999 57777777666543 222333566764
Q ss_pred cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
.++|+++-|++.. .+.+.+... ...+++|=.=.....|++ +..+++|+.+...+.----..+....++++
T Consensus 88 ~~~D~V~i~tp~~-~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 163 (350)
T 3rc1_A 88 DDVDAVYVPLPAV-LHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLD 163 (350)
T ss_dssp TTCSEEEECCCGG-GHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHH
T ss_pred CCCCEEEECCCcH-HHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHh
Confidence 5799999998754 344444432 445888852222224444 344678988876554444444444445544
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0003 Score=67.13 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=102.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCCccCCCCceecCCCccccc--cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGEKINDSKEFWS--IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~~~~~~~~~~~~~~~~il~--~~~ 135 (262)
++|.|+|+|++|+.++..|.+.|.+|+ +.| .+.+++.++.+ +.. + .+....++.+++.. .++
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~-v~d----------r~~~~~~~l~~~~~~---g-~gi~~~~~~~e~v~~l~~a 67 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVC-AFN----------RTVSKVDDFLANEAK---G-TKVLGAHSLEEMVSKLKKP 67 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSTHHHHHHHHTTTT---T-SSCEECSSHHHHHHHBCSS
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHhcccc---C-CCeEEeCCHHHHHhhccCC
Confidence 579999999999999999999999876 766 45666666554 210 0 12222222444443 389
Q ss_pred eEEeeCCccCcccccchh----cc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhHH------------
Q psy14499 136 DILIPAAIEDQITINNAN----NV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVIV------------ 196 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~----~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi~------------ 196 (262)
|+++-|.+......+.+. .+ ..++|+...|+.. +.+..+.+.++|+.++.- .++|+...
T Consensus 68 DvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~--pv~g~~~~a~~g~~i~~gg~ 145 (482)
T 2pgd_A 68 RRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS--GVSGGEDGARYGPSLMPGGN 145 (482)
T ss_dssp CEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE--EEESHHHHHHHCCEEEEEEC
T ss_pred CEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCC--CCCCChhhhccCCeEEeCCC
Confidence 999999887533333333 23 3569999999865 334556777889887732 22333221
Q ss_pred -HHHH----HHhhhcC-C-------CCC----HH----HHHHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHH
Q psy14499 197 -SYFE----WVQNLSN-L-------LWT----EQ----EINLRLNNIICNAFDAIWELANTK-KVSLRTAAFII 248 (262)
Q Consensus 197 -s~~E----~~~~~~~-~-------~~~----~~----~v~~~l~~~~~~~~~~v~~~a~~~-~~~~r~aa~~~ 248 (262)
..++ +++.... . .+- .. -+...+...+...+.+.+..+++. |+++.+...+.
T Consensus 146 ~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~ 219 (482)
T 2pgd_A 146 KEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAF 219 (482)
T ss_dssp TTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 1112 2222111 1 121 11 122334444557778888888888 99987765554
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00066 Score=61.60 Aligned_cols=128 Identities=10% Similarity=0.064 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|+|++|+..++.|.+. ++++++|+| .|.+++.+..++.+ ...+++.++++. .
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d----------~~~~~~~~~~~~~~-------~~~~~~~~~ll~~~ 74 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCD----------IDPAALKAAVERTG-------ARGHASLTDMLAQT 74 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEEC----------SSHHHHHHHHHHHC-------CEEESCHHHHHHHC
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEc----------CCHHHHHHHHHHcC-------CceeCCHHHHhcCC
Confidence 457999999999999999999886 899999999 68888777766554 233443566764 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHH
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWV 202 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~ 202 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+-----..+....+++
T Consensus 75 ~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i 148 (354)
T 3q2i_A 75 DADIVILTTPSG-LHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAM 148 (354)
T ss_dssp CCSEEEECSCGG-GHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHH
T ss_pred CCCEEEECCCcH-HHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHH
Confidence 899999998754 334433332 445777742111123343 34467788776444433333333334444
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=6.6e-05 Score=68.62 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=59.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
..+|+|+|+|+||+.+++.|.+. +.++++|+|++ ...+.+++ .....+|.+
T Consensus 3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~--~~~~~~~~------------------~~~~~~d~~ 62 (332)
T 2ejw_A 3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRD--PRKPRAIP------------------QELLRAEPF 62 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSC--TTSCCSSC------------------GGGEESSCC
T ss_pred eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECC--HHHhhccC------------------cccccCCHH
Confidence 46899999999999999999875 57999999964 11222332 112233356
Q ss_pred cccccCceEEeeCCccCcccccchhc-c-CceEEEecCCCCCCHHH
Q psy14499 129 EFWSIPCDILIPAAIEDQITINNANN-V-TAKIILEGANGPTTTEA 172 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~e~a~~-~-~~kiIve~AN~p~t~ea 172 (262)
+++ +.||+++|+.......+.+.+ + ..|.|+-+...|++.++
T Consensus 63 ~ll--~iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~ 106 (332)
T 2ejw_A 63 DLL--EADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAW 106 (332)
T ss_dssp CCT--TCSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSH
T ss_pred HHh--CCCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHH
Confidence 777 999999998755333444432 3 45555554444554333
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00074 Score=62.76 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-------CC-ceec---
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-------NE-GEKI--- 124 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-------~~-~~~~--- 124 (262)
+.+.+|+|+|+|.+|..+++.+..+|++|+ +.| .++.++....+....+... .+ .+.+
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~-v~D----------~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~ 250 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRLGAKTT-GYD----------VRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEA 250 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHHTCEEE-EEC----------SSGGGHHHHHHTTCEECCCC-------------CHH
T ss_pred cCCCEEEEECchHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHcCCeEEeccccccccccchhhhhHH
Confidence 478999999999999999999999999977 778 3444443333321111110 00 0000
Q ss_pred ---C---CCccccccCceEEeeCCc------cCcccccchhccC-ceEEEecC-----CCCCCHHHHHHHHHCCCeEe
Q psy14499 125 ---N---DSKEFWSIPCDILIPAAI------EDQITINNANNVT-AKIILEGA-----NGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 125 ---~---~~~~il~~~~DIlipaa~------~~~it~e~a~~~~-~kiIve~A-----N~p~t~ea~~~l~~rgi~~i 184 (262)
. +..+.+ .++||+|-|.. +.++|.+.+.+++ ..+|++-| |-.+|. .......+||.++
T Consensus 251 ~~~~~~~~l~e~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~-~~~~~~~~gV~~~ 326 (381)
T 3p2y_A 251 ERAQQQQALEDAI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTE-PGRTIVHHGVTIT 326 (381)
T ss_dssp HHHHHHHHHHHHH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCC-TTCEEEETTEEEE
T ss_pred HHhhhHHHHHHHH-hcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCcccccc-CCCeEEECCEEEE
Confidence 0 011222 58999998741 2578999999884 55777665 333331 1122456777664
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=61.94 Aligned_cols=106 Identities=19% Similarity=0.327 Sum_probs=70.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|+|+|+|++|+.+++.|.+.|.+|+ +.| .+.+++.++.+. + ....++.++.+ .++|++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~----------~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~D~v 65 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSD----------RNPEAIADVIAA-G-------AETASTAKAIA-EQCDVI 65 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT-T-------CEECSSHHHHH-HHCSEE
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEE-EEe----------CCHHHHHHHHHC-C-------CeecCCHHHHH-hCCCEE
Confidence 589999999999999999999999875 777 466666655543 1 22222233444 379999
Q ss_pred eeCCccCcccccc-------hhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 139 IPAAIEDQITINN-------ANNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 139 ipaa~~~~it~e~-------a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
+.|.+......+. .+.+ +.++|+.-+|+.. +.+..+.+.++|+.++
T Consensus 66 i~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~ 121 (299)
T 1vpd_A 66 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML 121 (299)
T ss_dssp EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred EEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 9998743222222 2233 3568888888764 2445566777888776
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0003 Score=67.56 Aligned_cols=175 Identities=11% Similarity=0.142 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH-hcCCccCCCCceecCCCccccc--c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT-FTRSIKDFNEGEKINDSKEFWS--I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~-~~g~~~~~~~~~~~~~~~~il~--~ 133 (262)
...+|.|+|.|++|+.+|..|.+.|.+|+ +.| .+.+++.++.+ +.+ + .+....+++.++.. .
T Consensus 9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~-v~d----------r~~~~~~~l~~~~~~---~-~gi~~~~s~~e~v~~l~ 73 (497)
T 2p4q_A 9 MSADFGLIGLAVMGQNLILNAADHGFTVC-AYN----------RTQSKVDHFLANEAK---G-KSIIGATSIEDFISKLK 73 (497)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSSHHHHHHHHTTTT---T-SSEECCSSHHHHHHTSC
T ss_pred CCCCEEEEeeHHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHccccc---C-CCeEEeCCHHHHHhcCC
Confidence 34689999999999999999999999876 767 46677666655 211 0 11222222334442 1
Q ss_pred CceEEeeCCccCcccccch----hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH-----------
Q psy14499 134 PCDILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI----------- 195 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi----------- 195 (262)
++|++|-|-+.+....+.+ +.+ +.++|+...|... +.+..+.+.++|+.+++-.+. ||..
T Consensus 74 ~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVs--gg~~~a~~G~~im~g 151 (497)
T 2p4q_A 74 RPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVS--GGEEGARYGPSLMPG 151 (497)
T ss_dssp SSCEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE--SHHHHHHHCCEEEEE
T ss_pred CCCEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcc--cChhHhhcCCeEEec
Confidence 4999999987753333333 333 3579999999864 344556788889988733322 3321
Q ss_pred --HHHHHH----HhhhcC-------CCCC----HHH----HHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHH
Q psy14499 196 --VSYFEW----VQNLSN-------LLWT----EQE----INLRLNNIICNAFDAIWELANT-KKVSLRTAAFII 248 (262)
Q Consensus 196 --~s~~E~----~~~~~~-------~~~~----~~~----v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~~ 248 (262)
-..++. ++.... ..|- .-. +...+...+...+.+.+..+++ .|+++.+...+.
T Consensus 152 g~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~ 226 (497)
T 2p4q_A 152 GSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF 226 (497)
T ss_dssp ECGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 111222 222111 1221 111 2333444556777888888898 599987766554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0011 Score=59.71 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|..|+ .+++++.+.++.|++++|+|.|+ ||+.+|++|...|++|+ |++++- -|
T Consensus 144 ~~PcTp~gi----~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~---------- 201 (301)
T 1a4i_A 144 FIPCTPKGC----LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHSKT-------AH---------- 201 (301)
T ss_dssp CCCHHHHHH----HHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SS----------
T ss_pred ccCchHHHH----HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEE-EEECCc-------cc----------
Confidence 456898885 55677789999999999999996 89999999999999977 887320 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGPT 168 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p~ 168 (262)
..+.+ ..+||+|-+.. .+.++.+.++ ..-+|++-+-.+.
T Consensus 202 ---------------L~~~~-~~ADIVI~Avg~p~~I~~~~vk--~GavVIDVgi~~~ 241 (301)
T 1a4i_A 202 ---------------LDEEV-NKGDILVVATGQPEMVKGEWIK--PGAIVIDCGINYV 241 (301)
T ss_dssp ---------------HHHHH-TTCSEEEECCCCTTCBCGGGSC--TTCEEEECCCBC-
T ss_pred ---------------HHHHh-ccCCEEEECCCCcccCCHHHcC--CCcEEEEccCCCc
Confidence 11222 48899999876 4688888765 3457787777665
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0027 Score=59.39 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=88.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c---c
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S---I 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~---~ 133 (262)
+.+|+|+|+|.+|+.+++.|.+.|..|+ |.| .|++.+.++.+. |.-.-+-+++ ..++| . .
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vv-vId----------~d~~~v~~~~~~-g~~vi~GDat----~~~~L~~agi~ 67 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMV-VLD----------HDPDHIETLRKF-GMKVFYGDAT----RMDLLESAGAA 67 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------CCHHHHHHHHHT-TCCCEESCTT----CHHHHHHTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHhC-CCeEEEcCCC----CHHHHHhcCCC
Confidence 4679999999999999999999999998 777 688887766543 2100011111 12233 1 4
Q ss_pred CceEEeeCCccCcccc---cchhccC--ceEEEecCCCCCCHHHHHHHHHCCCeE--eccccccchhhHHHHHHHHhhhc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNVT--AKIILEGANGPTTTEADDILRDKGIIL--APDVITNAGGVIVSYFEWVQNLS 206 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~~--~kiIve~AN~p~t~ea~~~l~~rgi~~--iPD~~aN~GGvi~s~~E~~~~~~ 206 (262)
++|++|-|...+..+. ..++++. .++|+-..| ++-...|.+.|+.. -|.+.+ +--+.... +..
T Consensus 68 ~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~----~~~~~~L~~~Gad~Vi~~~~~~-a~~la~~~---L~~-- 137 (413)
T 3l9w_A 68 KAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD----VDHYIRLRQAGVEKPERETFEG-ALKTGRLA---LES-- 137 (413)
T ss_dssp TCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS----HHHHHHHHHTTCSSCEETTHHH-HHHHHHHH---HHH--
T ss_pred ccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC----HHHHHHHHHCCCCEEECccHHH-HHHHHHHH---HHH--
Confidence 7999999887644443 3444443 467775544 56677888888753 233322 11111112 221
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy14499 207 NLLWTEQEINLRLNNIICNAFDAIWEL 233 (262)
Q Consensus 207 ~~~~~~~~v~~~l~~~~~~~~~~v~~~ 233 (262)
+..+++++.+.++..-...++.+.+.
T Consensus 138 -lg~~~~~~~~~~~~~r~~~~~~~~~~ 163 (413)
T 3l9w_A 138 -LGLGPYEARERADVFRRFNIQMVEEM 163 (413)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence 23567777776666544434433333
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=60.26 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=72.4
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
++..||+|+|+|.+|+..++.|.+. ++++++|+| .|.+++.. .++.+ ...+++.++++. .
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d----------~~~~~~~~-a~~~g-------~~~~~~~~~ll~~~ 64 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFD----------ILAEKREA-AAQKG-------LKIYESYEAVLADE 64 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEEC----------SSHHHHHH-HHTTT-------CCBCSCHHHHHHCT
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEc----------CCHHHHHH-HHhcC-------CceeCCHHHHhcCC
Confidence 4568999999999999999988876 899999999 57776542 23222 223343566663 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccc
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDV 187 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~ 187 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+
T Consensus 65 ~~D~V~i~tp~~-~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 123 (359)
T 3e18_A 65 KVDAVLIATPND-SHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ 123 (359)
T ss_dssp TCCEEEECSCGG-GHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred CCCEEEEcCCcH-HHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 899999998753 344444332 445778742212223444 33367788765433
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00018 Score=68.18 Aligned_cols=145 Identities=13% Similarity=0.140 Sum_probs=89.3
Q ss_pred HHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc-CC---cc-----
Q psy14499 47 KIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT-RS---IK----- 116 (262)
Q Consensus 47 ~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~-g~---~~----- 116 (262)
..|+.+...-+..||.|+|+|.+|+..++.+.+ .++++++|+| .|+++..+..++. |. +.
T Consensus 12 ~~l~~r~~~~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D----------~~~era~~~a~~~yG~~~~~~~~~~~ 81 (446)
T 3upl_A 12 RDLAARAETGKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSA----------RRLPNTFKAIRTAYGDEENAREATTE 81 (446)
T ss_dssp HHHHHHHHTTCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEEC----------SSTHHHHHHHHHHHSSSTTEEECSSH
T ss_pred HHHHHHHhcCCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEe----------CCHHHHHHHHHHhcCCccccccccch
Confidence 344433333366899999999999999988866 4899999999 6787776665543 31 00
Q ss_pred -CC------CCceecCCCccccc-cCceEEeeCCccCcccccchhc-c-CceEEEecCCCCCC----HHHHHHHHHCCCe
Q psy14499 117 -DF------NEGEKINDSKEFWS-IPCDILIPAAIEDQITINNANN-V-TAKIILEGANGPTT----TEADDILRDKGII 182 (262)
Q Consensus 117 -~~------~~~~~~~~~~~il~-~~~DIlipaa~~~~it~e~a~~-~-~~kiIve~AN~p~t----~ea~~~l~~rgi~ 182 (262)
.. .....++|.++++. -++|+++.|++......+.+.. + ..|.|+- .|-+++ ++..+.-+++|+.
T Consensus 82 ~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~-~nk~l~~~eg~eL~~~A~e~Gvv 160 (446)
T 3upl_A 82 SAMTRAIEAGKIAVTDDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM-MNVEADVTIGPYLKAQADKQGVI 160 (446)
T ss_dssp HHHHHHHHTTCEEEESCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE-CCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhhccCCceEECCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe-cCcccCHHHHHHHHHHHHHhCCe
Confidence 00 01223444566774 4799999999753333333333 2 3455552 244553 3334445778998
Q ss_pred EeccccccchhhHHHHHHHHh
Q psy14499 183 LAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 183 ~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+.+.+-.. -+.++-.++|.+
T Consensus 161 l~~~~gdq-p~~~~eLv~~a~ 180 (446)
T 3upl_A 161 YSLGAGDE-PSSCMELIEFVS 180 (446)
T ss_dssp EEECTTSH-HHHHHHHHHHHH
T ss_pred eeecCCcc-hHHHHHHHHHHH
Confidence 87655333 355667778877
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00058 Score=59.00 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=67.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|..|. ++| .+.+++.++.++.+ ....++.++++ .++|++
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~-~~~----------~~~~~~~~~~~~~g-------~~~~~~~~~~~-~~~D~V 64 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELI-ISG----------SSLERSKEIAEQLA-------LPYAMSHQDLI-DQVDLV 64 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEE-EEC----------SSHHHHHHHHHHHT-------CCBCSSHHHHH-HTCSEE
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEC----------CCHHHHHHHHHHcC-------CEeeCCHHHHH-hcCCEE
Confidence 589999999999999999999997654 777 46777666654433 11122233444 389999
Q ss_pred eeCCccCcccccchhcc-CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 139 IPAAIEDQITINNANNV-TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 139 ipaa~~~~it~e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+-|.+.. ...+.+..+ +.++|++-.++....+..+.+ .++..+
T Consensus 65 i~~v~~~-~~~~v~~~l~~~~~vv~~~~~~~~~~l~~~~-~~~~~~ 108 (259)
T 2ahr_A 65 ILGIKPQ-LFETVLKPLHFKQPIISMAAGISLQRLATFV-GQDLPL 108 (259)
T ss_dssp EECSCGG-GHHHHHTTSCCCSCEEECCTTCCHHHHHHHH-CTTSCE
T ss_pred EEEeCcH-hHHHHHHHhccCCEEEEeCCCCCHHHHHHhc-CCCCCE
Confidence 9999844 334444445 345888887765433444444 345333
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00086 Score=57.88 Aligned_cols=97 Identities=21% Similarity=0.213 Sum_probs=62.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|.|+|.|++|+.+++.|.+.| ..|+ +.| .+.+++.++.++.+ ....++..+.+ ++|+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~-~~~----------r~~~~~~~~~~~~g-------~~~~~~~~~~~--~~D~ 60 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IAN----------RGAEKRERLEKELG-------VETSATLPELH--SDDV 60 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEE-EEC----------SSHHHHHHHHHHTC-------CEEESSCCCCC--TTSE
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEE-EEC----------CCHHHHHHHHHhcC-------CEEeCCHHHHh--cCCE
Confidence 47999999999999999999999 8865 777 46676666655422 22222244555 8999
Q ss_pred EeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHH
Q psy14499 138 LIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 138 lipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l 176 (262)
++.|.+... ..+....+ +.++|+.-+|+-...+..+.+
T Consensus 61 vi~~v~~~~-~~~v~~~l~~~~~ivv~~~~g~~~~~l~~~~ 100 (263)
T 1yqg_A 61 LILAVKPQD-MEAACKNIRTNGALVLSVAAGLSVGTLSRYL 100 (263)
T ss_dssp EEECSCHHH-HHHHHTTCCCTTCEEEECCTTCCHHHHHHHT
T ss_pred EEEEeCchh-HHHHHHHhccCCCEEEEecCCCCHHHHHHHc
Confidence 999987432 23333333 246888876654333333433
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0013 Score=59.28 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=83.4
Q ss_pred CeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
+||.|+|+|.+|+. .+..|.+. ++++++|+| .|+++..+..++.+- ...++|.++++. .++
T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d----------~~~~~a~~~a~~~g~------~~~y~d~~ell~~~~i 87 (350)
T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIAS----------RDLTRAREMADRFSV------PHAFGSYEEMLASDVI 87 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEEC----------SSHHHHHHHHHHHTC------SEEESSHHHHHHCSSC
T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEEC----------CCHHHHHHHHHHcCC------CeeeCCHHHHhcCCCC
Confidence 69999999999975 57777764 899999999 688888887776542 123444567764 578
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
|+++=|++.. .+.+.+... ...++||=.=.....|++++ .+++|+.+...+.----..+....++++
T Consensus 88 DaV~I~tP~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~ 160 (350)
T 4had_A 88 DAVYIPLPTS-QHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLID 160 (350)
T ss_dssp SEEEECSCGG-GHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHH
T ss_pred CEEEEeCCCc-hhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhh
Confidence 9999988743 444444432 44577775433333555444 3667887776655544444444445544
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00075 Score=60.73 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=70.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCC-HHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFN-IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD-~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
.++|.|+|+|++|..+++.|.+.| .+|+ +.|.+ ++-.+ .++..+...+.| . .-.+..++. .+|
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~-~~dr~-----~~~~~~~~~~~~~~~~~g-------~-~~~s~~e~~-~~a 88 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLA-AYDLR-----FNDPAASGALRARAAELG-------V-EPLDDVAGI-ACA 88 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEE-EECGG-----GGCTTTHHHHHHHHHHTT-------C-EEESSGGGG-GGC
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEE-EEeCC-----CccccchHHHHHHHHHCC-------C-CCCCHHHHH-hcC
Confidence 468999999999999999999999 8887 66631 10011 112222222222 1 110245555 479
Q ss_pred eEEeeCCccCcccc---cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccc
Q psy14499 136 DILIPAAIEDQITI---NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~ 188 (262)
|++|-|-+...... +..+.+ +.++|+..++.+. +.+..+.+.++|+.++...+
T Consensus 89 DvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv 147 (317)
T 4ezb_A 89 DVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAV 147 (317)
T ss_dssp SEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred CEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccC
Confidence 99999987654432 122223 3568887776543 34455777889988774433
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=63.79 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=70.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++.+++|.|+|+|++|+.+|+.|..+|++|+ +.|.+ .++.. ++ . + +..++.++++ .
T Consensus 142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~-~~d~~----------~~~~~---~~-~-~------~~~~~l~ell-~ 198 (333)
T 1j4a_A 142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI-TYDIF----------RNPEL---EK-K-G------YYVDSLDDLY-K 198 (333)
T ss_dssp CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSS----------CCHHH---HH-T-T------CBCSCHHHHH-H
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEE-EECCC----------cchhH---Hh-h-C------eecCCHHHHH-h
Confidence 46899999999999999999999999999987 54531 11111 11 1 1 1121144555 4
Q ss_pred CceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-C-HHHHHHHHHCCCe
Q psy14499 134 PCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-T-TEADDILRDKGII 182 (262)
Q Consensus 134 ~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t-~ea~~~l~~rgi~ 182 (262)
.+|+++.|.+. ++++.+....++ ..+++.-+-+++ . .+..+.|++..|.
T Consensus 199 ~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ 255 (333)
T 1j4a_A 199 QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255 (333)
T ss_dssp HCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred hCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCce
Confidence 89999998764 345555555563 557888888875 4 4446788887665
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0004 Score=60.69 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=67.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+ |++|+ +.| .+.+++.+..+..- ...+ ..+.+ .++|++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~-~~~----------~~~~~~~~~~~~g~--------~~~~-~~~~~-~~~D~v 59 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTL-VWN----------RTFEKALRHQEEFG--------SEAV-PLERV-AEARVI 59 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEE-EEC----------SSTHHHHHHHHHHC--------CEEC-CGGGG-GGCSEE
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEE-EEe----------CCHHHHHHHHHCCC--------cccC-HHHHH-hCCCEE
Confidence 479999999999999999999 99876 666 35555555544311 1112 23444 389999
Q ss_pred eeCCccCcccccch----hcc-CceEEEecCCCCC-C-HHHHHHHHHCCCeEecc
Q psy14499 139 IPAAIEDQITINNA----NNV-TAKIILEGANGPT-T-TEADDILRDKGIILAPD 186 (262)
Q Consensus 139 ipaa~~~~it~e~a----~~~-~~kiIve~AN~p~-t-~ea~~~l~~rgi~~iPD 186 (262)
+.|.+......+.. +.+ +.++|+...|... + .+..+.+.++|+.+++-
T Consensus 60 i~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~ 114 (289)
T 2cvz_A 60 FTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDA 114 (289)
T ss_dssp EECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC
T ss_pred EEeCCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 99998654222222 223 3567887777543 2 34456667778877643
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0014 Score=59.09 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=80.0
Q ss_pred CeEEEEcCCHHHHHHHHHHH-H-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFF-K-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|.+|+..++.|. + .++++++|+| .|.+++.+..++.+- ....+++.++++. .++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d----------~~~~~~~~~~~~~g~-----~~~~~~~~~~ll~~~~~ 67 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTD----------VNQEAAQKVVEQYQL-----NATVYPNDDSLLADENV 67 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEEC----------SSHHHHHHHHHHTTC-----CCEEESSHHHHHHCTTC
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEc----------CCHHHHHHHHHHhCC-----CCeeeCCHHHHhcCCCC
Confidence 68999999999999999998 4 5899999999 688887777666431 1233444566764 479
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeE-eccccccchhhHHHHHHHHh
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIIL-APDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~-iPD~~aN~GGvi~s~~E~~~ 203 (262)
|+++-|++.. .+.+.+... ...+++|=.=.....+++++ .+++|+.+ ...+.----..+....++++
T Consensus 68 D~V~i~tp~~-~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~ 141 (344)
T 3mz0_A 68 DAVLVTSWGP-AHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALD 141 (344)
T ss_dssp CEEEECSCGG-GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHH
T ss_pred CEEEECCCch-hHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHH
Confidence 9999999643 344444433 34577765322223444433 36678755 44443333333333444443
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.001 Score=60.64 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHH-H-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFF-K-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~-~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+++..||+|+|+|.+|+..++.|. + .++++++|+| .|.+++.+..++.+- ....+++.++++.
T Consensus 20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d----------~~~~~~~~~a~~~g~-----~~~~~~~~~~ll~ 84 (357)
T 3ec7_A 20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCD----------IVAGRAQAALDKYAI-----EAKDYNDYHDLIN 84 (357)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEEC----------SSTTHHHHHHHHHTC-----CCEEESSHHHHHH
T ss_pred CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEe----------CCHHHHHHHHHHhCC-----CCeeeCCHHHHhc
Confidence 456789999999999999999998 4 5899999999 567776666665431 1233443566764
Q ss_pred -cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeE
Q psy14499 133 -IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIIL 183 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~ 183 (262)
.++|+++-|++.. .+.+.+... ...+++|=.=.....+++++ .+++|+.+
T Consensus 85 ~~~~D~V~i~tp~~-~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 85 DKDVEVVIITASNE-AHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp CTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCEEEEcCCcH-HHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 4799999998653 344444433 44577875222222444433 36678755
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00018 Score=57.67 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=62.6
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec----CCC
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI----NDS 127 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~----~~~ 127 (262)
+..++.+.+|+|+|+|.+|+.+++.|.+.|.+|+ +.|. |.+.+....++.+ ...+ .+.
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~-vid~----------~~~~~~~~~~~~g-------~~~~~~d~~~~ 74 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVV-VVDK----------NEYAFHRLNSEFS-------GFTVVGDAAEF 74 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES----------CGGGGGGSCTTCC-------SEEEESCTTSH
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEE-EEEC----------CHHHHHHHHhcCC-------CcEEEecCCCH
Confidence 4456788999999999999999999999999988 5552 3333222110111 1111 001
Q ss_pred cccc---ccCceEEeeCCccCcccc---cchhcc-CceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 128 KEFW---SIPCDILIPAAIEDQITI---NNANNV-TAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 128 ~~il---~~~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
+.+. -.++|++|.|+.....+. +.++.+ ....|+.-.|++.. .+.|++.|+.
T Consensus 75 ~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---~~~l~~~G~~ 133 (155)
T 2g1u_A 75 ETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDPEK---IKIFEENGIK 133 (155)
T ss_dssp HHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSGGG---HHHHHTTTCE
T ss_pred HHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCHHH---HHHHHHCCCc
Confidence 1111 136899999987644433 233332 33455555666654 3456777765
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0019 Score=58.47 Aligned_cols=127 Identities=13% Similarity=0.233 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|+|.+|+. .++.|.+. ++++++|+| .|+++.. + .+++...+++.++++. .
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d----------~~~~~~~---~------~~~~~~~~~~~~~ll~~~ 66 (352)
T 3kux_A 6 DKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSS----------SDASKVH---A------DWPAIPVVSDPQMLFNDP 66 (352)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEEC----------SCHHHHH---T------TCSSCCEESCHHHHHHCS
T ss_pred CCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEEC----------CCHHHHH---h------hCCCCceECCHHHHhcCC
Confidence 3479999999999996 77877765 899999999 5666543 1 2334444554667774 4
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
++|+++-|++. ..+.+.+... ...+++|=.=.....|++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~vD~V~i~tp~-~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~ 141 (352)
T 3kux_A 67 SIDLIVIPTPN-DTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLA 141 (352)
T ss_dssp SCCEEEECSCT-TTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred CCCEEEEeCCh-HHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHh
Confidence 79999999964 3455544443 344777742111224443 334678887764443333333333344443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00039 Score=59.73 Aligned_cols=98 Identities=19% Similarity=0.327 Sum_probs=64.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
+||.|+|+|++|+..++.|.+.|+.+++++|++.. .+ + ..++.++++..++|++
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~------~~--~------------------~~~~~~~l~~~~~DvV 54 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE------HE--K------------------MVRGIDEFLQREMDVA 54 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CT--T------------------EESSHHHHTTSCCSEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc------hh--h------------------hcCCHHHHhcCCCCEE
Confidence 48999999999999999999899999999985321 00 0 1222445554589999
Q ss_pred eeCCccCcccccchhcc---CceEEEecCCCCCCHHH----HHHHHHCCCeE
Q psy14499 139 IPAAIEDQITINNANNV---TAKIILEGANGPTTTEA----DDILRDKGIIL 183 (262)
Q Consensus 139 ipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea----~~~l~~rgi~~ 183 (262)
+.|++.. .+.+.+... ...+|++..-.+..+++ .+..+++|+.+
T Consensus 55 v~~~~~~-~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~ 105 (236)
T 2dc1_A 55 VEAASQQ-AVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRV 105 (236)
T ss_dssp EECSCHH-HHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCE
T ss_pred EECCCHH-HHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeE
Confidence 9999855 444444332 34567765433334543 34456678764
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=59.58 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS 114 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~ 114 (262)
.|++=...+---+.+++.. ...++++|+|.|..|+..++.|.+ .+.+.|.|+| .++++..++.++.+.
T Consensus 104 lt~~RTaa~s~laa~~la~-~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~----------r~~~~a~~la~~~~~ 172 (322)
T 1omo_A 104 TTSLRTGAAGGIAAKYLAR-KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYD----------VREKAAKKFVSYCED 172 (322)
T ss_dssp HHHHHHHHHHHHHHHHHSC-TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEEC----------SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEEC----------CCHHHHHHHHHHHHh
Confidence 4444333322223334443 467899999999999999999887 5677777888 577777666554221
Q ss_pred ccCCCCceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 115 IKDFNEGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 115 ~~~~~~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
. .. ... .++.++.+ ++||++-|++.. +++.+.. +-.+-++..|+..|-..|....+.+++..|+
T Consensus 173 ~-~~-~~~-~~~~~e~v--~aDvVi~aTp~~~pv~~~~~l-~~G~~V~~ig~~~p~~~el~~~~~~~a~v~v 238 (322)
T 1omo_A 173 R-GI-SAS-VQPAEEAS--RCDVLVTTTPSRKPVVKAEWV-EEGTHINAIGADGPGKQELDVEILKKAKIVV 238 (322)
T ss_dssp T-TC-CEE-ECCHHHHT--SSSEEEECCCCSSCCBCGGGC-CTTCEEEECSCCSTTCCCBCHHHHHTEEEEE
T ss_pred c-Cc-eEE-ECCHHHHh--CCCEEEEeeCCCCceecHHHc-CCCeEEEECCCCCCCccccCHHHHhcCeEEE
Confidence 0 01 122 33244555 799999999853 2222111 1145577788888876666555666665444
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0013 Score=60.88 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=84.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC---------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA---------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK 128 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~---------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 128 (262)
..||+|+|+|.+|+.-++.|.+. ++++++|+| .|++++.+..++.+. ...+++.+
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d----------~~~~~a~~~a~~~~~------~~~y~d~~ 89 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALAD----------QDQAMAERHAAKLGA------EKAYGDWR 89 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEEC----------SSHHHHHHHHHHHTC------SEEESSHH
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEc----------CCHHHHHHHHHHcCC------CeEECCHH
Confidence 37999999999999888887653 579999999 788888887776542 23344456
Q ss_pred cccc-cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHHH---HHCCCeEeccccccchhhHHHHHHH
Q psy14499 129 EFWS-IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDIL---RDKGIILAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 129 ~il~-~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~l---~~rgi~~iPD~~aN~GGvi~s~~E~ 201 (262)
+++. .++|+++=|++. ..+.+.+... ...+++|=.=.....|+++++ +++|+.+...+.---...+.-..++
T Consensus 90 ~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~ 168 (412)
T 4gqa_A 90 ELVNDPQVDVVDITSPN-HLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQI 168 (412)
T ss_dssp HHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCc-HHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHH
Confidence 6764 579999988864 4444444443 444777754444445665444 5678777655544444444444444
Q ss_pred Hh
Q psy14499 202 VQ 203 (262)
Q Consensus 202 ~~ 203 (262)
++
T Consensus 169 i~ 170 (412)
T 4gqa_A 169 IA 170 (412)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00068 Score=59.46 Aligned_cols=123 Identities=10% Similarity=0.048 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 38 GRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 38 g~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
++|...+++. . ++++ +++|+|.|.+|++++..|.+.|++-|.|++ -+.++..++.++.+
T Consensus 95 ~~G~~~~l~~----~--~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~n----------R~~~ka~~la~~~~---- 153 (253)
T 3u62_A 95 WVGVVKSLEG----V--EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVN----------RTIERAKALDFPVK---- 153 (253)
T ss_dssp HHHHHHHTTT----C--CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEE----------SCHHHHHTCCSSCE----
T ss_pred HHHHHHHHHh----c--CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEe----------CCHHHHHHHHHHcc----
Confidence 4555555532 2 5688 999999999999999999999983344777 35555444332211
Q ss_pred CCCceecCCCccccccCceEEeeCCccCccc-ccch--hcc-CceEEEecCCCCCCHHHHHHHHHCCCe-Eeccc
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQIT-INNA--NNV-TAKIILEGANGPTTTEADDILRDKGII-LAPDV 187 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~it-~e~a--~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~-~iPD~ 187 (262)
...+++..+.+ .++||+|-|++...-. ..+. ..+ +..+|++-+.+ .|+-.++ .+++|+. ++|..
T Consensus 154 ---~~~~~~~~~~~-~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~-~T~ll~~-A~~~G~~~~~~Gl 222 (253)
T 3u62_A 154 ---IFSLDQLDEVV-KKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF-DTPLVVK-ARKLGVKHIIKGN 222 (253)
T ss_dssp ---EEEGGGHHHHH-HTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS-CCHHHHH-HHHHTCSEEECTH
T ss_pred ---cCCHHHHHhhh-cCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC-CcHHHHH-HHHCCCcEEECCH
Confidence 11122112222 4799999988643221 1111 123 35689998888 6665544 3678988 77655
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00081 Score=59.07 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=68.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
-++|.|+|+|++|+.+++.|.+. +..|+ +.| .+.+.+.+..+ .|.. ....++.++.+ .++
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d----------~~~~~~~~~~~-~g~~-----~~~~~~~~~~~-~~a 67 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYN----------RSDRSRDIALE-RGIV-----DEATADFKVFA-ALA 67 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EEC----------SSHHHHHHHHH-TTSC-----SEEESCTTTTG-GGC
T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEc----------CCHHHHHHHHH-cCCc-----ccccCCHHHhh-cCC
Confidence 46899999999999999999887 56766 667 46666555443 2211 01222244444 489
Q ss_pred eEEeeCCccCcccccchh----c-c-CceEEEecCCCCCC--HHHHHHHHHCCCeEec
Q psy14499 136 DILIPAAIEDQITINNAN----N-V-TAKIILEGANGPTT--TEADDILRDKGIILAP 185 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~----~-~-~~kiIve~AN~p~t--~ea~~~l~~rgi~~iP 185 (262)
|+++.|.+...+ .+.+. . + ...+|+..+|.+.. ....+.+.++++.++|
T Consensus 68 DvVilavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~ 124 (290)
T 3b1f_A 68 DVIILAVPIKKT-IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVG 124 (290)
T ss_dssp SEEEECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEE
T ss_pred CEEEEcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEE
Confidence 999999987554 33222 2 3 24588877776542 3333444444777776
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00079 Score=60.35 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCC--HHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFN--IPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD--~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.-++|.|+|+|++|..+++.|.+.|+ .|+ +.| .+ .+......+ .| ....++..+.+ .
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~-~~d----------r~~~~~~~~~~~~-~g-------~~~~~~~~e~~-~ 82 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMA-AYD----------AASAESWRPRAEE-LG-------VSCKASVAEVA-G 82 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEE-EEC----------SSCHHHHHHHHHH-TT-------CEECSCHHHHH-H
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEE-EEc----------CCCCHHHHHHHHH-CC-------CEEeCCHHHHH-h
Confidence 34799999999999999999999999 766 777 33 344333333 22 22222234444 4
Q ss_pred CceEEeeCCccCcccc---cchhcc-CceEEEecCCCCC--CHHHHHHHHHC--CCeEecccc
Q psy14499 134 PCDILIPAAIEDQITI---NNANNV-TAKIILEGANGPT--TTEADDILRDK--GIILAPDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~r--gi~~iPD~~ 188 (262)
+||++|.|-+...... +..+.+ ..++|+....... +.+..+.+.++ |+.++.-.+
T Consensus 83 ~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv 145 (312)
T 3qsg_A 83 ECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAV 145 (312)
T ss_dssp HCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 7999999987654432 122223 3457887765543 33445667777 888764433
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.003 Score=55.18 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=57.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|.|+ |.+|+.+++.+.+. ++.++++.|.. -| .++++..++|
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------~d-------------------------l~~~~~~~~D 47 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------DP-------------------------LSLLTDGNTE 47 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------CC-------------------------THHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------CC-------------------------HHHHhccCCc
Confidence 48999996 99999999998865 99999998842 01 2234434789
Q ss_pred EEeeCCccCcccccchh---ccCceEEEecCCCCCCHHHHHHH
Q psy14499 137 ILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~---~~~~kiIve~AN~p~t~ea~~~l 176 (262)
|+|+++.+... .+++. +-+..+|++-.. ++++..+.|
T Consensus 48 vvIDfT~p~a~-~~~~~~a~~~g~~~VigTTG--~~~e~~~~l 87 (245)
T 1p9l_A 48 VVIDFTHPDVV-MGNLEFLIDNGIHAVVGTTG--FTAERFQQV 87 (245)
T ss_dssp EEEECSCTTTH-HHHHHHHHHTTCEEEECCCC--CCHHHHHHH
T ss_pred EEEEccChHHH-HHHHHHHHHcCCCEEEcCCC--CCHHHHHHH
Confidence 99999976654 34443 336678887662 676644444
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.016 Score=54.73 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=98.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC-------------ceecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE-------------GEKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~-------------~~~~~ 125 (262)
++|+|+|.|.||..+|..|.+.|..|+ +.| .|.+++.++.+..-.+ ..|+ .+..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~-~~D----------~~~~~v~~l~~g~~~i-~e~gl~~~l~~~~~~~~l~~t~ 70 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVR-CID----------TDRNKIEQLNSGTIPI-YEPGLEKMIARNVKAGRLRFGT 70 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHTCSCC-CSTTHHHHHHHHHHTTSEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEE-EEE----------CCHHHHHHHHcCCCcc-cCCCHHHHHHhhcccCcEEEEC
Confidence 689999999999999999999999988 777 6777766665421111 0111 11112
Q ss_pred CCccccccCceEEeeCCccCcc---------cc----cchhcc-CceEEEecCCCCC--CHHHHHHHHHC----------
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQI---------TI----NNANNV-TAKIILEGANGPT--TTEADDILRDK---------- 179 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~i---------t~----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~r---------- 179 (262)
+..+.+ .+||++|-|.++..- -. +.++.+ +.++|+.-...|. +.+..+.++++
T Consensus 71 d~~ea~-~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~ 149 (450)
T 3gg2_A 71 EIEQAV-PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDF 149 (450)
T ss_dssp CHHHHG-GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CHHHHH-hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcce
Confidence 122333 489999999876531 11 112223 3456666665543 34444555543
Q ss_pred CCeEecccccc--------------chhhHHHHHHHHhhhcCCC------C---CHH--HH----HHHHHHHHHHHHHHH
Q psy14499 180 GIILAPDVITN--------------AGGVIVSYFEWVQNLSNLL------W---TEQ--EI----NLRLNNIICNAFDAI 230 (262)
Q Consensus 180 gi~~iPD~~aN--------------~GGvi~s~~E~~~~~~~~~------~---~~~--~v----~~~l~~~~~~~~~~v 230 (262)
.+..-|.++.. .||---..++.++.+-... + +.. +. ...........++++
T Consensus 150 ~v~~~Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~ 229 (450)
T 3gg2_A 150 DIASNPEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDV 229 (450)
T ss_dssp EEEECCCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEechhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444665432 1222122344444322110 0 111 11 112233344567888
Q ss_pred HHHHhhcCCCHHHHHHHHHH
Q psy14499 231 WELANTKKVSLRTAAFIIGC 250 (262)
Q Consensus 231 ~~~a~~~~~~~r~aa~~~a~ 250 (262)
...+++.|+++.+....+..
T Consensus 230 ~~l~~~~Gid~~~v~~~~~~ 249 (450)
T 3gg2_A 230 ANLCERVGADVSMVRLGIGS 249 (450)
T ss_dssp HHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHcC
Confidence 88999999998887766553
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=59.16 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=86.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHC--------CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKA--------GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~--------g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
.|+..||+|+|+|.+|+.-++.|.+. ++++++|+| .|++++.+..++.+- ...++|
T Consensus 3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d----------~~~~~a~~~a~~~g~------~~~~~d 66 (390)
T 4h3v_A 3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCG----------RDAEAVRAAAGKLGW------STTETD 66 (390)
T ss_dssp -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEEC----------SSHHHHHHHHHHHTC------SEEESC
T ss_pred CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEc----------CCHHHHHHHHHHcCC------CcccCC
Confidence 35668999999999999877777652 458999999 688888777776542 233443
Q ss_pred Cccccc-cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---H---HHCCCeEeccccccchhhHH
Q psy14499 127 SKEFWS-IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---L---RDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 127 ~~~il~-~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l---~~rgi~~iPD~~aN~GGvi~ 196 (262)
.++++. .++|+++=|++. ..+.+.+... ...++||=.=.....|++++ . +++|+.+...+.----..+.
T Consensus 67 ~~~ll~~~~iDaV~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~ 145 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPG-DSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIA 145 (390)
T ss_dssp HHHHTTCTTCSEEEECSCG-GGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHH
T ss_pred HHHHhcCCCCCEEEEeCCh-HHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHH
Confidence 566664 579999998864 3455444442 44578885433344677666 3 33788777666554445444
Q ss_pred HHHHHHh
Q psy14499 197 SYFEWVQ 203 (262)
Q Consensus 197 s~~E~~~ 203 (262)
...++++
T Consensus 146 ~~k~~i~ 152 (390)
T 4h3v_A 146 LARKLVA 152 (390)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=56.94 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=82.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
.||+|+|+|++|+..++.|.+. ++++++|+| .|.++..+..++.+.- ..+++.++++. .+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d----------~~~~~a~~~a~~~~~~------~~~~~~~~ll~~~~ 66 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAA----------RDLSRAKEFAQKHDIP------KAYGSYEELAKDPN 66 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEEC----------SSHHHHHHHHHHHTCS------CEESSHHHHHHCTT
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEc----------CCHHHHHHHHHHcCCC------cccCCHHHHhcCCC
Confidence 6899999999999999988765 368999999 6788877776665421 22333566764 58
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+|+++-|++.. .+.+.+... ...+++|= |+ + .|++ +..+++|+.+...+..---..+....++++
T Consensus 67 vD~V~i~tp~~-~H~~~~~~al~~GkhVl~EK---P~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~ 140 (334)
T 3ohs_X 67 VEVAYVGTQHP-QHKAAVMLCLAAGKAVLCEK---PMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLA 140 (334)
T ss_dssp CCEEEECCCGG-GHHHHHHHHHHTTCEEEEES---SSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred CCEEEECCCcH-HHHHHHHHHHhcCCEEEEEC---CCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHh
Confidence 99999998643 455554443 44588884 44 2 4444 334678888765555444444444455553
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0012 Score=61.86 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 56 IINSKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
.+..||+|+|+|++|+ ..++.|.+. ++++++|+| .|.++..+..++.+.-. .+...+++.++++.
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d----------~~~~~~~~~a~~~g~~~--~~~~~~~~~~~ll~~ 148 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS----------GNAEKAKIVAAEYGVDP--RKIYDYSNFDKIAKD 148 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC----------SCHHHHHHHHHHTTCCG--GGEECSSSGGGGGGC
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEc----------CCHHHHHHHHHHhCCCc--ccccccCCHHHHhcC
Confidence 3567999999999997 788888764 689999999 67777766666543110 00112333566764
Q ss_pred cCceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
.++|+++-|++.. .+.+.+... ...+++|= |+ + .|++ +..+++|+.+...+.----..+....++++
T Consensus 149 ~~vD~V~iatp~~-~h~~~~~~al~aGk~Vl~EK---Pla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 224 (433)
T 1h6d_A 149 PKIDAVYIILPNS-LHAEFAIRAFKAGKHVMCEK---PMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIR 224 (433)
T ss_dssp TTCCEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCch-hHHHHHHHHHHCCCcEEEcC---CCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHH
Confidence 5899999999754 344444332 33477773 44 3 3343 333668887765544444444444555554
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00062 Score=59.83 Aligned_cols=106 Identities=14% Similarity=0.232 Sum_probs=63.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|..|+ +.| .+.+++.++.+. + .+..++..+++ .++|++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~-~~~----------~~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~Dvv 60 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLI-IYD----------VFPDACKEFQDA-G-------EQVVSSPADVA-EKADRI 60 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEE-EEC----------SSTHHHHHHHTT-T-------CEECSSHHHHH-HHCSEE
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc-C-------CeecCCHHHHH-hcCCEE
Confidence 479999999999999999999999876 666 455665554432 1 22222233444 379999
Q ss_pred eeCCccCcccccchh-------cc-CceEEEecCCCCCC--HHHHHHHHHCCCeEe
Q psy14499 139 IPAAIEDQITINNAN-------NV-TAKIILEGANGPTT--TEADDILRDKGIILA 184 (262)
Q Consensus 139 ipaa~~~~it~e~a~-------~~-~~kiIve~AN~p~t--~ea~~~l~~rgi~~i 184 (262)
+.|.+......+... .+ +.++|+..+..+.. .+..+.+.++|+.++
T Consensus 61 i~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~ 116 (296)
T 2gf2_A 61 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM 116 (296)
T ss_dssp EECCSSHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEeCCCHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 999754332222221 23 34588883333221 222345666776543
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0026 Score=57.47 Aligned_cols=131 Identities=8% Similarity=0.037 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCC-HHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 56 IINSKISIQGFG-NVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqGfG-~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
-+..||+|+|+| .+|+..++.|.+. ++++++|+| .|+++..+..++.+. ...+++.++++.
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d----------~~~~~~~~~a~~~~~------~~~~~~~~~ll~ 79 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS----------RTRSHAEEFAKMVGN------PAVFDSYEELLE 79 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEEC----------SSHHHHHHHHHHHSS------CEEESCHHHHHH
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEc----------CCHHHHHHHHHHhCC------CcccCCHHHHhc
Confidence 466899999999 8999988888875 689999999 688887777666542 123443566764
Q ss_pred -cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 133 -IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
.++|+++-|++.. .+.+.+... ...+++|=.=.....|++++ .+++|+.+...+.----.......++++
T Consensus 80 ~~~vD~V~i~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 156 (340)
T 1zh8_A 80 SGLVDAVDLTLPVE-LNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVE 156 (340)
T ss_dssp SSCCSEEEECCCGG-GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCch-HHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh
Confidence 4799999999743 344444432 44588883211122444433 3678887765554444444444455553
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00089 Score=59.20 Aligned_cols=102 Identities=20% Similarity=0.221 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
+.++|.|+|+|++|+++++.|.+.|. .|+ ++| .+.+++.++.++.+ ....++..+.+ .
T Consensus 2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~-v~d----------r~~~~~~~l~~~~g-------i~~~~~~~~~~-~ 62 (280)
T 3tri_A 2 NTSNITFIGGGNMARNIVVGLIANGYDPNRIC-VTN----------RSLDKLDFFKEKCG-------VHTTQDNRQGA-L 62 (280)
T ss_dssp CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEE-EEC----------SSSHHHHHHHHTTC-------CEEESCHHHHH-S
T ss_pred CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEE-EEe----------CCHHHHHHHHHHcC-------CEEeCChHHHH-h
Confidence 45789999999999999999999997 665 777 46677766665432 22232233444 4
Q ss_pred CceEEeeCCccCcccc---cchhc-cCce-EEEecCCCCCCHHHHHHHH
Q psy14499 134 PCDILIPAAIEDQITI---NNANN-VTAK-IILEGANGPTTTEADDILR 177 (262)
Q Consensus 134 ~~DIlipaa~~~~it~---e~a~~-~~~k-iIve~AN~p~t~ea~~~l~ 177 (262)
++|++|.|.....+.. +..+. ++.+ +|+.-+++-......+.+.
T Consensus 63 ~aDvVilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~ 111 (280)
T 3tri_A 63 NADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLG 111 (280)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHT
T ss_pred cCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcC
Confidence 8999999987644421 12222 3444 7776666544344444443
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0038 Score=56.91 Aligned_cols=97 Identities=20% Similarity=0.374 Sum_probs=59.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCCC---------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDFN---------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~~---------~~~~-- 123 (262)
.||+|.|||.+|+.+++.|.+ .+..+++|.|.. .|++.+..+.+ .++.+.+.. +.+.
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~--------~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~ 75 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPF--------IDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPIT 75 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSS--------SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCC--------CCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEE
Confidence 699999999999999999876 579999998820 25665544433 222221100 0111
Q ss_pred -cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 -IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 -~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+. +++++ | +.++|++++|++. ..+.+.+... .+| +++++.
T Consensus 76 v~~~~d~~~l~~~~~~vDvV~eatg~-~~~~e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 76 IFQERDPSKIKWGDAGAEYVVESTGV-FTTMEKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp EECCSSGGGCCTTTTTCCEEEECSSS-CCSHHHHGGGGGGTCSEEEESSC
T ss_pred EEecCCHHHCccccCCCCEEEECCCc-hhhHHHHHHHHhCCCeEEEeccC
Confidence 11 24444 4 3589999999864 3455555554 444 555655
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=59.64 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC--ceecCCCccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE--GEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~--~~~~~~~~~il~ 132 (262)
.+.++++|+|.|..|+..++.|.. .+.+-|.|.| .+.++..++.++... +++ ....++.++.+
T Consensus 127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~----------r~~~~a~~la~~~~~---~~g~~~~~~~~~~eav- 192 (350)
T 1x7d_A 127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYD----------TDPLATAKLIANLKE---YSGLTIRRASSVAEAV- 192 (350)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEEC----------SSHHHHHHHHHHHTT---CTTCEEEECSSHHHHH-
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEc----------CCHHHHHHHHHHHHh---ccCceEEEeCCHHHHH-
Confidence 477899999999999999988754 5666666888 578777777665321 112 12233234455
Q ss_pred cCceEEeeCCccC----cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecccc
Q psy14499 133 IPCDILIPAAIED----QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVI 188 (262)
Q Consensus 133 ~~~DIlipaa~~~----~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~ 188 (262)
.++||++-|++.. ++..+.. +-.+-++..|+..|-..|....+.+++..|+ |..
T Consensus 193 ~~aDiVi~aTps~~~~pvl~~~~l-~~G~~V~~vgs~~p~~~El~~~~~~~a~v~v-D~~ 250 (350)
T 1x7d_A 193 KGVDIITTVTADKAYATIITPDML-EPGMHLNAVGGDCPGKTELHADVLRNARVFV-EYE 250 (350)
T ss_dssp TTCSEEEECCCCSSEEEEECGGGC-CTTCEEEECSCCBTTBEEECHHHHHTSEEEE-SSH
T ss_pred hcCCEEEEeccCCCCCceecHHHc-CCCCEEEECCCCCCCceeeCHHHHhcCcEEE-CCH
Confidence 4799999999865 2332221 1245677788888876666666677776444 543
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0015 Score=58.72 Aligned_cols=111 Identities=13% Similarity=0.137 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCHHHH-HHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 56 IINSKISIQGFGNVGS-VAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~-~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
++..||+|+|+|.+|. ..++.|...++++++|+| .|.++..+..++.+ +...+++.++++. .
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d----------~~~~~~~~~a~~~~------~~~~~~~~~~ll~~~ 65 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFE----------SDSDNRAKFTSLFP------SVPFAASAEQLITDA 65 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEEC----------SCTTSCHHHHHHST------TCCBCSCHHHHHTCT
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeC----------CCHHHHHHHHHhcC------CCcccCCHHHHhhCC
Confidence 3457999999999996 577777778999999999 45555555555443 2223343556664 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHH---HHHHCCCeEecc
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADD---ILRDKGIILAPD 186 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~---~l~~rgi~~iPD 186 (262)
++|+++-|++.. .+.+.+... ...+++|= |+ + .++++ ..+++|+.+...
T Consensus 66 ~~D~V~i~tp~~-~h~~~~~~al~aGkhVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~v~ 123 (336)
T 2p2s_A 66 SIDLIACAVIPC-DRAELALRTLDAGKDFFTAK---PPLTTLEQLDAVQRRVAETGRKFAVY 123 (336)
T ss_dssp TCCEEEECSCGG-GHHHHHHHHHHTTCEEEECS---SCCSCHHHHHHHHHHHHHHCCCEEEC
T ss_pred CCCEEEEeCChh-hHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 799999998743 344444432 33477773 44 3 34443 336778877633
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0028 Score=57.61 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|+|.+|+. .++.|.+. ++++++|+| .|.+++ .++ |++...+++.++++. .
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d----------~~~~~~---~~~------~~~~~~~~~~~~ll~~~ 64 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMT----------SRTEEV---KRD------FPDAEVVHELEEITNDP 64 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEEC----------SCHHHH---HHH------CTTSEEESSTHHHHTCT
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEc----------CCHHHH---Hhh------CCCCceECCHHHHhcCC
Confidence 4579999999999996 67777665 899999999 466552 222 223444555677774 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 65 ~vD~V~i~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~ 139 (358)
T 3gdo_A 65 AIELVIVTTPSG-LHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLIS 139 (358)
T ss_dssp TCCEEEECSCTT-THHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred CCCEEEEcCCcH-HHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHh
Confidence 899999999753 444444443 445788742222224444 334678887765554433444444445544
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0011 Score=57.08 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=66.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC----EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA----KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~----~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++|.|+|+|++|+.+++.|.+.|. .|+ ++| .+.+++.++.++.+ ....++..+.+ .+
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~-~~~----------r~~~~~~~~~~~~g-------~~~~~~~~e~~-~~ 63 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQII-CSD----------LNTANLKNASEKYG-------LTTTTDNNEVA-KN 63 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEE-EEC----------SCHHHHHHHHHHHC-------CEECSCHHHHH-HH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEE-EEe----------CCHHHHHHHHHHhC-------CEEeCChHHHH-Hh
Confidence 689999999999999999999997 766 777 57777766655432 22222233444 47
Q ss_pred ceEEeeCCccCcccccchhc----cC-ceEEEecCCCCCCHHHHHHHHH--CCCeEeccc
Q psy14499 135 CDILIPAAIEDQITINNANN----VT-AKIILEGANGPTTTEADDILRD--KGIILAPDV 187 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~----~~-~kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~ 187 (262)
+|+++.|.....+ .+..+. ++ .++|+.-.++-......+.+.. +-+...|+.
T Consensus 64 aDvVilav~~~~~-~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~ 122 (247)
T 3gt0_A 64 ADILILSIKPDLY-ASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNT 122 (247)
T ss_dssp CSEEEECSCTTTH-HHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCG
T ss_pred CCEEEEEeCHHHH-HHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCCh
Confidence 9999999855432 222222 32 4577765554443344444432 234455654
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00075 Score=60.24 Aligned_cols=113 Identities=9% Similarity=0.126 Sum_probs=68.5
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
+.+||+|+|+|++|+. .++.|.+ .++++++|+|. +.++..+..++.+- ..+++.+++ ..+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~----------~~~~~~~~~~~~g~-------~~~~~~~~l-~~~ 65 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP----------TRAKALPICESWRI-------PYADSLSSL-AAS 65 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS----------SCTTHHHHHHHHTC-------CBCSSHHHH-HTT
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECC----------CHHHHHHHHHHcCC-------CccCcHHHh-hcC
Confidence 4579999999999996 8888866 47899999993 44444444444331 122323344 568
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCC-HHHH---HHHHHCCCeEeccccc
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTT-TEAD---DILRDKGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t-~ea~---~~l~~rgi~~iPD~~a 189 (262)
+|+++-|++.. .+.+.+... ...+++|-.= .++ .+++ +..+++|+.+...+.-
T Consensus 66 ~D~V~i~tp~~-~h~~~~~~al~~G~~v~~eKP~-~~~~~~~~~l~~~a~~~g~~~~~~~~~ 125 (319)
T 1tlt_A 66 CDAVFVHSSTA-SHFDVVSTLLNAGVHVCVDKPL-AENLRDAERLVELAARKKLTLMVGFNR 125 (319)
T ss_dssp CSEEEECSCTT-HHHHHHHHHHHTTCEEEEESSS-CSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred CCEEEEeCCch-hHHHHHHHHHHcCCeEEEeCCC-CCCHHHHHHHHHHHHHcCCeEEEeeec
Confidence 99999998754 333333332 3447777421 123 3333 3346788877654443
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0013 Score=58.83 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=70.2
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.-.+.|.+|+. +++++.+.+++|++++|+|.|+ ||+.++.+|...|++|+ |++++- -|
T Consensus 139 ~~~PcTp~gv~----~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~--------- 197 (285)
T 3l07_A 139 CLESCTPKGIM----TMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT-------TD--------- 197 (285)
T ss_dssp CCCCHHHHHHH----HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SS---------
T ss_pred CCCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc-------hh---------
Confidence 34668999885 4677788999999999999988 89999999999999976 886420 01
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.. ..+||+|-++. .+.++++..+. .-+|++-+-++
T Consensus 198 ----------------L~~~~-~~ADIVI~Avg~p~~I~~~~vk~--GavVIDvgi~~ 236 (285)
T 3l07_A 198 ----------------LKSHT-TKADILIVAVGKPNFITADMVKE--GAVVIDVGINH 236 (285)
T ss_dssp ----------------HHHHH-TTCSEEEECCCCTTCBCGGGSCT--TCEEEECCCEE
T ss_pred ----------------HHHhc-ccCCEEEECCCCCCCCCHHHcCC--CcEEEEecccC
Confidence 11222 47899998876 46777776632 34667666555
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0015 Score=59.65 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCHHHH-HHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGFGNVGS-VAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~-~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+..||+|+|+|.++. ..+..|...++++++|+| .|+++..+..++.+. ...+++.+++++ .+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d----------~~~~~a~~~a~~~~~------~~~~~~~~~ll~~~~ 88 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHE----------KDDALAAEFSAVYAD------ARRIATAEEILEDEN 88 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEEC----------SCHHHHHHHHHHSSS------CCEESCHHHHHTCTT
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEc----------CCHHHHHHHHHHcCC------CcccCCHHHHhcCCC
Confidence 468999999999985 567777788999999999 688888777766542 233444567775 47
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccccccch-hhHHHHHHHHh
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVITNAG-GVIVSYFEWVQ 203 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~aN~G-Gvi~s~~E~~~ 203 (262)
+|+++-|++.. .+.+.+... ...+++|=.=.....|++++ .+++|+.+...+.---. ..+....++++
T Consensus 89 vD~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~ 163 (361)
T 3u3x_A 89 IGLIVSAAVSS-ERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVA 163 (361)
T ss_dssp CCEEEECCCHH-HHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHH
T ss_pred CCEEEEeCChH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHH
Confidence 99999888653 344444433 45588885322223445433 36788877655544332 33334444443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00039 Score=62.10 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+..+|+|+|+|++|+..++.|.+. +.++++|+| .|.+++.+..++ ...+++.++++. .+
T Consensus 9 ~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d----------~~~~~~~~~~~~---------~~~~~~~~~~l~~~~ 69 (315)
T 3c1a_A 9 SPVRLALIGAGRWGKNYIRTIAGLPGAALVRLAS----------SNPDNLALVPPG---------CVIESDWRSVVSAPE 69 (315)
T ss_dssp CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEE----------SCHHHHTTCCTT---------CEEESSTHHHHTCTT
T ss_pred CcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEe----------CCHHHHHHHHhh---------CcccCCHHHHhhCCC
Confidence 347999999999999999999885 789999999 566654332221 122343566774 58
Q ss_pred ceEEeeCCccCcccccchhc-c--CceEEEecCCCCC--CH-HH---HHHHHHCCCeEeccccc
Q psy14499 135 CDILIPAAIEDQITINNANN-V--TAKIILEGANGPT--TT-EA---DDILRDKGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~-~--~~kiIve~AN~p~--t~-ea---~~~l~~rgi~~iPD~~a 189 (262)
+|+++-|++.. .+.+.+.. + ...+++|- |+ +. ++ .+..+++|+.+...+..
T Consensus 70 ~D~V~i~tp~~-~h~~~~~~al~~Gk~v~~eK---P~~~~~~~~~~l~~~a~~~g~~~~~~~~~ 129 (315)
T 3c1a_A 70 VEAVIIATPPA-THAEITLAAIASGKAVLVEK---PLTLDLAEAEAVAAAAKATGVMVWVEHTQ 129 (315)
T ss_dssp CCEEEEESCGG-GHHHHHHHHHHTTCEEEEES---SSCSCHHHHHHHHHHHHHHCCCEEEECGG
T ss_pred CCEEEEeCChH-HHHHHHHHHHHCCCcEEEcC---CCcCCHHHHHHHHHHHHHcCCEEEEeech
Confidence 99999998754 33444443 2 33477773 43 33 33 33446788877654443
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=58.51 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
-.+.|.+|+. +++++.+.+++|++++|+|.|+ ||+.++.+|.+.|++|+ |++++- -|
T Consensus 139 ~~PcTp~gv~----~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt-v~h~~t-------~~---------- 196 (285)
T 3p2o_A 139 FLPCTPLGVM----KLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT-------KD---------- 196 (285)
T ss_dssp CCCHHHHHHH----HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SC----------
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeCCc-------hh----------
Confidence 4678999984 5677789999999999999987 89999999999999976 887421 01
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGPT 168 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p~ 168 (262)
..+.. ..+||+|-++. .+.++++..+ ..-+|++-+-++.
T Consensus 197 ---------------L~~~~-~~ADIVI~Avg~p~~I~~~~vk--~GavVIDVgi~~~ 236 (285)
T 3p2o_A 197 ---------------LSLYT-RQADLIIVAAGCVNLLRSDMVK--EGVIVVDVGINRL 236 (285)
T ss_dssp ---------------HHHHH-TTCSEEEECSSCTTCBCGGGSC--TTEEEEECCCEEC
T ss_pred ---------------HHHHh-hcCCEEEECCCCCCcCCHHHcC--CCeEEEEeccCcc
Confidence 11222 47899998876 4677777663 2446777665553
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00083 Score=59.79 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=66.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
-++|.|+|+|++|+.+++.|.+.|.+|+ +.|. +.+++.++.+. | ....++..+.+ .++|+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~-~~~~----------~~~~~~~~~~~-g-------~~~~~~~~~~~-~~~Dv 89 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVT-VWNR----------TAEKCDLFIQE-G-------ARLGRTPAEVV-STCDI 89 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEE-EECS----------SGGGGHHHHHT-T-------CEECSCHHHHH-HHCSE
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEE-EEeC----------CHHHHHHHHHc-C-------CEEcCCHHHHH-hcCCE
Confidence 3789999999999999999999999876 6662 34443333332 1 12222133444 37999
Q ss_pred EeeCCccCcccccch-------hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEec
Q psy14499 138 LIPAAIEDQITINNA-------NNV-TAKIILEGANGPT--TTEADDILRDKGIILAP 185 (262)
Q Consensus 138 lipaa~~~~it~e~a-------~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iP 185 (262)
++.|.+......+.. +.+ +.++|+...|... ..+..+.+.++|+.++.
T Consensus 90 Vi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~ 147 (316)
T 2uyy_A 90 TFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLE 147 (316)
T ss_dssp EEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 999988432222222 223 3568888888542 22334556667887763
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0026 Score=58.01 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
+..||+|+|+|.+|+. .++.|.+. ++++++|+| .|.+++. ++ +++...+++.++++. .
T Consensus 6 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d----------~~~~~~~---~~------~~~~~~~~~~~~ll~~~ 66 (364)
T 3e82_A 6 NTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVAS----------RDEEKVK---RD------LPDVTVIASPEAAVQHP 66 (364)
T ss_dssp -CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEEC----------SCHHHHH---HH------CTTSEEESCHHHHHTCT
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEc----------CCHHHHH---hh------CCCCcEECCHHHHhcCC
Confidence 4579999999999996 77777664 899999999 5666543 22 234444554567774 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~~D~V~i~tp~~-~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~ 141 (364)
T 3e82_A 67 DVDLVVIASPNA-THAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIE 141 (364)
T ss_dssp TCSEEEECSCGG-GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCChH-HHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHH
Confidence 899999998653 344444432 445777632111223343 344678887765443333333334444443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00049 Score=53.20 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++|+|.|+|.+|+.+++.|.+.|++|+ +.|
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~-~~d 36 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVL-AVD 36 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCE-EEE
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 456789999999999999999999999887 555
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0016 Score=58.19 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.-.+.|.+|+. +++++.+.+++|++++|+|.|+ ||+.++.+|...|++|+ ++.++- -|+
T Consensus 139 ~~~PcTp~gv~----~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVt-v~hs~T-------~~L-------- 198 (286)
T 4a5o_A 139 LLRPCTPKGIM----TLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVT-VTHRFT-------RDL-------- 198 (286)
T ss_dssp SSCCHHHHHHH----HHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEE-EECTTC-------SCH--------
T ss_pred CCCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCC-------cCH--------
Confidence 34668998874 4677789999999999999987 99999999999999987 776421 011
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGPT 168 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p~ 168 (262)
.+.. ..+||+|-+.. .+.++.+..+ ..-+|++-+-++.
T Consensus 199 -----------------~~~~-~~ADIVI~Avg~p~~I~~~~vk--~GavVIDvgi~~~ 237 (286)
T 4a5o_A 199 -----------------ADHV-SRADLVVVAAGKPGLVKGEWIK--EGAIVIDVGINRQ 237 (286)
T ss_dssp -----------------HHHH-HTCSEEEECCCCTTCBCGGGSC--TTCEEEECCSCSS
T ss_pred -----------------HHHh-ccCCEEEECCCCCCCCCHHHcC--CCeEEEEeccccc
Confidence 1222 47888888875 4677777663 2346777665553
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0039 Score=54.24 Aligned_cols=89 Identities=17% Similarity=0.194 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|.+|+ +.| .+.+.+.+..+ .+.. . ...++.+++ .++|++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~----------~~~~~~~~~~~-~g~~----~-~~~~~~~~~--~~~D~v 61 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLI-GVS----------RQQSTCEKAVE-RQLV----D-EAGQDLSLL--QTAKII 61 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHH-TTSC----S-EEESCGGGG--TTCSEE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHh-CCCC----c-cccCCHHHh--CCCCEE
Confidence 479999999999999999999999877 557 46666655443 2211 0 112223444 689999
Q ss_pred eeCCccCcccccch----hcc-CceEEEecCCCC
Q psy14499 139 IPAAIEDQITINNA----NNV-TAKIILEGANGP 167 (262)
Q Consensus 139 ipaa~~~~it~e~a----~~~-~~kiIve~AN~p 167 (262)
+.|.+...+ .+.+ +.+ ..++|+..+|.+
T Consensus 62 i~av~~~~~-~~~~~~l~~~~~~~~~vv~~~~~~ 94 (279)
T 2f1k_A 62 FLCTPIQLI-LPTLEKLIPHLSPTAIVTDVASVK 94 (279)
T ss_dssp EECSCHHHH-HHHHHHHGGGSCTTCEEEECCSCC
T ss_pred EEECCHHHH-HHHHHHHHhhCCCCCEEEECCCCc
Confidence 999986532 2222 223 245788876643
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=59.27 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.+.+|+|+|+|.+|+.+++.+..+|++|+ ++|.
T Consensus 169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-~~d~ 203 (384)
T 1l7d_A 169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVM-ATDV 203 (384)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 5689999999999999999999999999955 7774
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00086 Score=56.97 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=60.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
-++|+|+|.|++|+.+++.|.+.|..|+.+.| .+.+++.++.++.+. ....+..+.+ .++|+
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~----------r~~~~~~~l~~~~g~-------~~~~~~~~~~-~~aDv 84 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANS----------RGPASLSSVTDRFGA-------SVKAVELKDA-LQADV 84 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECT----------TCGGGGHHHHHHHTT-------TEEECCHHHH-TTSSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC----------CCHHHHHHHHHHhCC-------CcccChHHHH-hcCCE
Confidence 36899999999999999999999999885577 355555555444321 1111122333 57999
Q ss_pred EeeCCccCcccccchhc---cCceEEEecCCCC
Q psy14499 138 LIPAAIEDQITINNANN---VTAKIILEGANGP 167 (262)
Q Consensus 138 lipaa~~~~it~e~a~~---~~~kiIve~AN~p 167 (262)
++.|.+...+. +.+.+ ++.++|+..+|+-
T Consensus 85 Vilavp~~~~~-~v~~~l~~~~~~ivi~~~~g~ 116 (220)
T 4huj_A 85 VILAVPYDSIA-DIVTQVSDWGGQIVVDASNAI 116 (220)
T ss_dssp EEEESCGGGHH-HHHTTCSCCTTCEEEECCCCB
T ss_pred EEEeCChHHHH-HHHHHhhccCCCEEEEcCCCC
Confidence 99998754332 22222 4567999999875
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0079 Score=54.79 Aligned_cols=96 Identities=21% Similarity=0.385 Sum_probs=59.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh---cCCccCC--C-------Ccee--c
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF---TRSIKDF--N-------EGEK--I 124 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~---~g~~~~~--~-------~~~~--~ 124 (262)
.||+|.|||.+|+.+++.|.+....+++|.|. .|++-+..+.+. .|.+.+. + +.+. +
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~~~evvaind~---------~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v 71 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL---------TDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRA 71 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS---------SCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCEEEEEecC---------CCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEE
Confidence 48999999999999999987778999999882 377766555442 3322110 0 1111 1
Q ss_pred C---CCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEecC
Q psy14499 125 N---DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEGA 164 (262)
Q Consensus 125 ~---~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~A 164 (262)
. +++++ | +.++|++++|++ ...+.+.++.. .| |+|+.+.
T Consensus 72 ~~~~dp~~l~w~~~gvDiV~estG-~~~s~e~a~~~l~aGakkvVIsap 119 (331)
T 2g82_O 72 TAVKDPKEIPWAEAGVGVVIESTG-VFTDADKAKAHLEGGAKKVIITAP 119 (331)
T ss_dssp ECCSSGGGSCTTTTTEEEEEECSS-SCCBHHHHTHHHHTTCSEEEESSC
T ss_pred EecCChhhCcccccCCCEEEECCC-chhhHHHHHHHHHCCCCEEEECCC
Confidence 0 13222 3 357899999885 44556666554 34 3666554
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=57.48 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
..+||++.|+|+||+.+++. . +..++++.| +..| .+ +....+|.++++. ++|
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~------~k~g--------------el----gv~a~~d~d~lla-~pD 62 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD------RISK--------------DI----PGVVRLDEFQVPS-DVS 62 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC------SSCC--------------CC----SSSEECSSCCCCT-TCC
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe------cccc--------------cc----CceeeCCHHHHhh-CCC
Confidence 56899999999999999998 4 899999877 2122 11 1223344677885 999
Q ss_pred EEeeCCccCcccccchhccCc-eEEEecCCCCC-CHHHHHHH----HHCCCeE
Q psy14499 137 ILIPAAIEDQITINNANNVTA-KIILEGANGPT-TTEADDIL----RDKGIIL 183 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~~~-kiIve~AN~p~-t~ea~~~l----~~rgi~~ 183 (262)
++++|+....+.+.-.+-+++ +=|+-.+-+.+ .++..+.| ++.|..+
T Consensus 63 ~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l 115 (253)
T 1j5p_A 63 TVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARV 115 (253)
T ss_dssp EEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEE
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeE
Confidence 999999776555433444433 43444444444 45544444 3455554
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0034 Score=58.85 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC----CCccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN----DSKEF 130 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~----~~~~i 130 (262)
++..||+|+|+|.+|+..++.|.+. ++++++|+| .|.+++.+..+..... ++|....++ +.+++
T Consensus 18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d----------~~~~~~~~~a~~~~~~-g~~~~~~~~~~~~~~~~l 86 (444)
T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFAD----------PDPYMVGRAQEILKKN-GKKPAKVFGNGNDDYKNM 86 (444)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC----------SCHHHHHHHHHHHHHT-TCCCCEEECSSTTTHHHH
T ss_pred CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEe----------CCHHHHHHHHHHHHhc-CCCCCceeccCCCCHHHH
Confidence 4568999999999999999888774 799999999 6777766654421000 122233343 35677
Q ss_pred cc-cCceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHHH---HHHCCCeEe
Q psy14499 131 WS-IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADDI---LRDKGIILA 184 (262)
Q Consensus 131 l~-~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~~---l~~rgi~~i 184 (262)
+. .++|+++-|++.. .+.+.+... ...+++| -|+ | .+++++ .+++|+.+.
T Consensus 87 l~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~E---KP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 87 LKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGME---VSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp TTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEEC---CCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred hcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 75 4799999999754 444544442 3457888 344 3 334333 367787665
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.002 Score=58.01 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+-.+.|.+|+. +++++.+.+++|++++|+|.|+ ||+.++.+|.+.|++|+ |+++
T Consensus 143 ~~~PcTp~gv~----~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~~~ 197 (300)
T 4a26_A 143 PFTPCTAKGVI----VLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVT-IVHS 197 (300)
T ss_dssp SCCCHHHHHHH----HHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred CCCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 44679999975 4666778999999999999987 89999999999999976 8875
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0026 Score=57.75 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+..||+|+|+|++|+..++.|.+. ++++++|+| .+.++..+..++.+- . +....+++.++++. .+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d----------~~~~~~~~~a~~~~~-~--~~~~~~~~~~~ll~~~~ 71 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVAS----------RSLEKAKAFATANNY-P--ESTKIHGSYESLLEDPE 71 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC----------SSHHHHHHHHHHTTC-C--TTCEEESSHHHHHHCTT
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEc----------CCHHHHHHHHHHhCC-C--CCCeeeCCHHHHhcCCC
Confidence 347999999999999999998875 789999999 577777666665431 0 11233443556764 47
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHH---HHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADD---ILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~---~l~~rgi~~i 184 (262)
+|+++-|++.. .+.+.+... ...+++|= |+ + .++++ ..+++|+.+.
T Consensus 72 ~D~V~i~tp~~-~h~~~~~~al~aGk~V~~EK---P~a~~~~e~~~l~~~a~~~g~~~~ 126 (362)
T 1ydw_A 72 IDALYVPLPTS-LHVEWAIKAAEKGKHILLEK---PVAMNVTEFDKIVDACEANGVQIM 126 (362)
T ss_dssp CCEEEECCCGG-GHHHHHHHHHTTTCEEEECS---SCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred CCEEEEcCChH-HHHHHHHHHHHCCCeEEEec---CCcCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999644 344444433 34477763 43 3 34433 3356787765
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00045 Score=61.94 Aligned_cols=119 Identities=10% Similarity=0.054 Sum_probs=72.5
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
+..||+|.| +|++|+.+++.+.+ .++.++++.|+++.- ..|.|..++... .. .+....++.++++. +
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~--~~G~d~gel~G~-------~~-~gv~v~~dl~~ll~-~ 88 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSS--FVDKDASILIGS-------DF-LGVRITDDPESAFS-N 88 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCT--TTTSBGGGGTTC-------SC-CSCBCBSCHHHHTT-S
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--ccccchHHhhcc-------Cc-CCceeeCCHHHHhc-C
Confidence 457999999 99999999999875 589999999975421 135555432110 00 12223333455664 8
Q ss_pred ceEEeeCCccCcccccchhc---cCceEEEecCCCCCCHHHHHHH----HHCCCeEeccccc
Q psy14499 135 CDILIPAAIEDQITINNANN---VTAKIILEGANGPTTTEADDIL----RDKGIILAPDVIT 189 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p~t~ea~~~l----~~rgi~~iPD~~a 189 (262)
+||+|+++.+... .+++.. -+..+|+.-. .++++..+.| ++.++++.|.|..
T Consensus 89 aDVvIDFT~p~a~-~~~~~~~l~~Gv~vViGTT--G~~~e~~~~L~~aa~~~~~~~a~N~Si 147 (288)
T 3ijp_A 89 TEGILDFSQPQAS-VLYANYAAQKSLIHIIGTT--GFSKTEEAQIADFAKYTTIVKSGNMSL 147 (288)
T ss_dssp CSEEEECSCHHHH-HHHHHHHHHHTCEEEECCC--CCCHHHHHHHHHHHTTSEEEECSCCCH
T ss_pred CCEEEEcCCHHHH-HHHHHHHHHcCCCEEEECC--CCCHHHHHHHHHHhCcCCEEEECCCcH
Confidence 9999999975543 333333 3556666543 2566544333 3356777777754
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0029 Score=58.16 Aligned_cols=128 Identities=19% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCeEEEEcCC-HHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 58 NSKISIQGFG-NVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 58 ~~~v~IqGfG-~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
.+||+|+|+| .+|...++.|.+. ++++++|+| .|.++..+..++.+ ...+++.++++. .+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~a~~~g-------~~~~~~~~ell~~~~ 64 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACD----------PNEDVRERFGKEYG-------IPVFATLAEMMQHVQ 64 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEEC----------SCHHHHHHHHHHHT-------CCEESSHHHHHHHSC
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEe----------CCHHHHHHHHHHcC-------CCeECCHHHHHcCCC
Confidence 4689999999 9999999888774 789999999 67887776666543 223343567774 47
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 65 vD~V~i~tp~~-~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 138 (387)
T 3moi_A 65 MDAVYIASPHQ-FHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQ 138 (387)
T ss_dssp CSEEEECSCGG-GHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHH
T ss_pred CCEEEEcCCcH-HHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHh
Confidence 99999998754 344444433 344777742111123343 334677887654443333333333444443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0011 Score=60.40 Aligned_cols=116 Identities=14% Similarity=0.212 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
++..||+|+|+|.+|+. .++.|.+. ++++++|+| .|+++..+..++. +....+++.++++.
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d----------~~~~~~~~~a~~~------~~~~~~~~~~~ll~~ 66 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACD----------SDLERARRVHRFI------SDIPVLDNVPAMLNQ 66 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEEC----------SSHHHHGGGGGTS------CSCCEESSHHHHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEc----------CCHHHHHHHHHhc------CCCcccCCHHHHhcC
Confidence 45689999999999985 78888775 799999999 6777765555442 23333444567774
Q ss_pred cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEecccc
Q psy14499 133 IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVI 188 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~ 188 (262)
.++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.
T Consensus 67 ~~vD~V~i~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~ 127 (359)
T 3m2t_A 67 VPLDAVVMAGPPQ-LHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMN 127 (359)
T ss_dssp SCCSEEEECSCHH-HHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCH
T ss_pred CCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 5789999988743 334443332 344777742211223444 334667887764443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0019 Score=60.26 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+.+|+|+|+|.+|..+++.+..+|++|+ ++|.
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~-v~D~ 203 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVR-AFDT 203 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 568999999999999999999999999866 7773
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00028 Score=62.60 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=68.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--CceecCCCccccc
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--EGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--~~~~~~~~~~il~ 132 (262)
+.+||+|.|+ |.+|+.+++.+.+ .++.+++++|....-. .|-|..+ +.+.+ +....++.++++.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~--~g~d~~~----------~~g~~~~~v~~~~dl~~~l~ 71 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL--LGSDAGE----------LAGAGKTGVTVQSSLDAVKD 71 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT--CSCCTTC----------SSSSSCCSCCEESCSTTTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhh--hhhhHHH----------HcCCCcCCceecCCHHHHhc
Confidence 4579999999 9999999998764 6899999998532100 0223211 11111 1222333455664
Q ss_pred cCceEEeeCCccCcccccchh---ccCceEEEecCCCCCCHHHHHHHHH----CCCeEeccc
Q psy14499 133 IPCDILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRD----KGIILAPDV 187 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~---~~~~kiIve~AN~p~t~ea~~~l~~----rgi~~iPD~ 187 (262)
++|++|+++.+... .+++. +-+..+|++-. .++++..+.|.+ .++++.|.+
T Consensus 72 -~~DvVIDft~p~~~-~~~~~~a~~~G~~vVigTt--G~~~e~~~~L~~~a~~~~vv~a~N~ 129 (273)
T 1dih_A 72 -DFDVFIDFTRPEGT-LNHLAFCRQHGKGMVIGTT--GFDEAGKQAIRDAAADIAIVFAANF 129 (273)
T ss_dssp -SCSEEEECSCHHHH-HHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHTTTSCEEECSCC
T ss_pred -CCCEEEEcCChHHH-HHHHHHHHhCCCCEEEECC--CCCHHHHHHHHHhcCCCCEEEEecC
Confidence 89999999965432 33333 23566888776 366665555543 355555544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00094 Score=56.31 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=65.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----ccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~~ 134 (262)
++|+|+|+|.+|+.+++.|.+.|..++ +.| .|++.+.++.+..+...-+.+. . ..+.+ -.+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~-vid----------~~~~~~~~l~~~~~~~~i~gd~---~-~~~~l~~a~i~~ 65 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVV-IIN----------KDRELCEEFAKKLKATIIHGDG---S-HKEILRDAEVSK 65 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEE-EEE----------SCHHHHHHHHHHSSSEEEESCT---T-SHHHHHHHTCCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHHHHHHHcCCeEEEcCC---C-CHHHHHhcCccc
Confidence 479999999999999999999999988 666 4777776655432210000011 1 11122 147
Q ss_pred ceEEeeCCccCccc---ccchhcc-CceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 135 CDILIPAAIEDQIT---INNANNV-TAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~~~it---~e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
+|++|-|+..+..+ ...++++ ....|+.-+|.+ +-.+.|++-|+.
T Consensus 66 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~---~~~~~l~~~G~d 114 (218)
T 3l4b_C 66 NDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDP---GNMEIFKKMGIT 114 (218)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSG---GGHHHHHHHTCE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCc---chHHHHHHCCCC
Confidence 99999988765544 3344442 333344444444 445667788875
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00046 Score=60.55 Aligned_cols=105 Identities=13% Similarity=0.150 Sum_probs=65.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|.+|+ +.| + ++ ..++ +.+. | ....++.++.+ .++|++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~-~-----~~--~~~~---~~~~-g-------~~~~~~~~~~~-~~~D~v 62 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLH-VTT-I-----GP--VADE---LLSL-G-------AVNVETARQVT-EFADII 62 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEE-ECC-S-----SC--CCHH---HHTT-T-------CBCCSSHHHHH-HTCSEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEE-EEc-C-----HH--HHHH---HHHc-C-------CcccCCHHHHH-hcCCEE
Confidence 589999999999999999999999876 555 2 11 1122 2222 1 11122133444 389999
Q ss_pred eeCCccCcccccch-------hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEe
Q psy14499 139 IPAAIEDQITINNA-------NNV-TAKIILEGANGPT--TTEADDILRDKGIILA 184 (262)
Q Consensus 139 ipaa~~~~it~e~a-------~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~i 184 (262)
+.|.+......+.. +.+ +.++|+.-.|+.. ..+..+.+.++|+.++
T Consensus 63 i~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~ 118 (295)
T 1yb4_A 63 FIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL 118 (295)
T ss_dssp EECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred EEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99986554222222 223 3568888888743 2344566677788776
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0032 Score=56.55 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=65.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccC--CC---Cc-eecCCCccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKD--FN---EG-EKINDSKEF 130 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~--~~---~~-~~~~~~~~i 130 (262)
.++|+|+|.|.+|..++..|.+.|..|+ +.| .+.+.+.++.+..+. +.+ ++ .. ...++.++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVL-AWD----------IDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA 72 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEE-EEe----------CCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH
Confidence 3699999999999999999999999976 666 456666555544221 101 00 00 112212333
Q ss_pred cccCceEEeeCCccCcccccchhc----cC-ceEEEecCC-CCCCHHHHHHHHHCC
Q psy14499 131 WSIPCDILIPAAIEDQITINNANN----VT-AKIILEGAN-GPTTTEADDILRDKG 180 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~----~~-~kiIve~AN-~p~t~ea~~~l~~rg 180 (262)
+ .++|+++-|...... .+.+.. ++ .++|+...| .+-+.+..+.+.++|
T Consensus 73 ~-~~~D~vi~~v~~~~~-~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~l~~~~ 126 (359)
T 1bg6_A 73 V-KDADVILIVVPAIHH-ASIAANIASYISEGQLIILNPGATGGALEFRKILRENG 126 (359)
T ss_dssp H-TTCSEEEECSCGGGH-HHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTT
T ss_pred H-hcCCEEEEeCCchHH-HHHHHHHHHhCCCCCEEEEcCCCchHHHHHHHHHHhcC
Confidence 3 489999999887654 333333 22 345555555 333444456666665
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.004 Score=55.96 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcc-ccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKE-FWS 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~-il~ 132 (262)
+.-++|.|+|+|++|+.+++.|.+.|. +|+ +.| .+.+.+....+. |.+. ...++.++ .+
T Consensus 31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~-~~d----------r~~~~~~~a~~~-G~~~-----~~~~~~~~~~~- 92 (314)
T 3ggo_A 31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYD----------INPESISKAVDL-GIID-----EGTTSIAKVED- 92 (314)
T ss_dssp CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEE-EEC----------SCHHHHHHHHHT-TSCS-----EEESCTTGGGG-
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEE-EEE----------CCHHHHHHHHHC-CCcc-----hhcCCHHHHhh-
Confidence 455899999999999999999999998 776 667 466666554432 3211 11222445 44
Q ss_pred cCceEEeeCCccCcccc---cchhcc-CceEEEecCCC
Q psy14499 133 IPCDILIPAAIEDQITI---NNANNV-TAKIILEGANG 166 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~ 166 (262)
.+||++|.|.+.+.+.. +..+.+ ...+|+.-+..
T Consensus 93 ~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~Sv 130 (314)
T 3ggo_A 93 FSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSV 130 (314)
T ss_dssp GCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred ccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECCCC
Confidence 58999999988765432 222223 24477765543
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.002 Score=57.63 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=69.1
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.-.+.|..|+ .+++++.+.++.|++++|+|.|+ ||+.++++|...|++|+ +++++- -|+
T Consensus 137 ~~~PcTp~gi----~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt-v~hs~t-------~~L-------- 196 (288)
T 1b0a_A 137 RLRPCTPRGI----VTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHRFT-------KNL-------- 196 (288)
T ss_dssp SSCCHHHHHH----HHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECSSC-------SCH--------
T ss_pred CCCCCcHHHH----HHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE-EEeCCc-------hhH--------
Confidence 3467898885 45666788999999999999997 79999999999999987 776321 111
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGPT 168 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p~ 168 (262)
.+.+ .++||+|-+.. .+.++.+..+ ..-+|++-+-.++
T Consensus 197 -----------------~~~~-~~ADIVI~Avg~p~lI~~~~vk--~GavVIDVgi~r~ 235 (288)
T 1b0a_A 197 -----------------RHHV-ENADLLIVAVGKPGFIPGDWIK--EGAIVIDVGINRL 235 (288)
T ss_dssp -----------------HHHH-HHCSEEEECSCCTTCBCTTTSC--TTCEEEECCCEEC
T ss_pred -----------------HHHh-ccCCEEEECCCCcCcCCHHHcC--CCcEEEEccCCcc
Confidence 1222 36888888876 3577777653 2346666665543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0011 Score=59.49 Aligned_cols=131 Identities=9% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~ 133 (262)
++..||+|+|+|++|+..++.|.+ .++++++|+|. |.++..+..++.+ -...+++.++++. .
T Consensus 3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~----------~~~~~~~~a~~~~------~~~~~~~~~~ll~~~ 66 (329)
T 3evn_A 3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSR----------TLESAQAFANKYH------LPKAYDKLEDMLADE 66 (329)
T ss_dssp --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECS----------CSSTTCC---CCC------CSCEESCHHHHHTCT
T ss_pred CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcC----------CHHHHHHHHHHcC------CCcccCCHHHHhcCC
Confidence 345799999999999999988876 47899999984 3333322222221 1122333556664 5
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.----..+....++++
T Consensus 67 ~~D~V~i~tp~~-~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~ 141 (329)
T 3evn_A 67 SIDVIYVATINQ-DHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLA 141 (329)
T ss_dssp TCCEEEECSCGG-GHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CCCEEEECCCcH-HHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHh
Confidence 799999988753 344444332 445777752222223443 334678887754443332333333444443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0029 Score=57.61 Aligned_cols=128 Identities=13% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
++..||+|+|+|.+|+. .+..|.+. ++++++|+|. |.++ ..+ .|++...+++.++++.
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~----------~~~~---~~~------~~~~~~~~~~~~~ll~~ 63 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVER----------SKEL---SKE------RYPQASIVRSFKELTED 63 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECS----------SCCG---GGT------TCTTSEEESCSHHHHTC
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcC----------CHHH---HHH------hCCCCceECCHHHHhcC
Confidence 35579999999999997 67777765 8999999994 3222 111 2334455555677775
Q ss_pred cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccccccchhhHHHHHHHHh
Q psy14499 133 IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~aN~GGvi~s~~E~~~ 203 (262)
.++|+++-|++. ..+.+.+... ...+++|=.=.....|++++ .+++|+.+...+.----..+....++++
T Consensus 64 ~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~ 139 (362)
T 3fhl_A 64 PEIDLIVVNTPD-NTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILA 139 (362)
T ss_dssp TTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCh-HHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHH
Confidence 479999999875 3344444332 45588885322223444433 3668887765554433444444445544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0055 Score=53.39 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=58.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc-Cc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI-PC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~-~~ 135 (262)
++|.|+|+|++|+.+++.|.+.|. +|+ +.| .+.+.+....+ .|.. ....++.++.+ . ++
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d----------~~~~~~~~~~~-~g~~-----~~~~~~~~~~~-~~~a 63 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYD----------INPESISKAVD-LGII-----DEGTTSIAKVE-DFSP 63 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEE-EEC----------SCHHHHHHHHH-TTSC-----SEEESCGGGGG-GTCC
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEE-EEe----------CCHHHHHHHHH-CCCc-----ccccCCHHHHh-cCCC
Confidence 489999999999999999999998 776 666 45666544432 2211 01122233444 4 89
Q ss_pred eEEeeCCccCcccccchh----cc-CceEEEecCCCCC
Q psy14499 136 DILIPAAIEDQITINNAN----NV-TAKIILEGANGPT 168 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~----~~-~~kiIve~AN~p~ 168 (262)
|+++.|.+..... +.+. .+ +..+|+..+|.+.
T Consensus 64 DvVilavp~~~~~-~v~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 64 DFVMLSSPVRTFR-EIAKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp SEEEECSCHHHHH-HHHHHHHHHSCTTCEEEECCSCCT
T ss_pred CEEEEcCCHHHHH-HHHHHHHhhCCCCcEEEECCCCcH
Confidence 9999998765332 2222 23 3458888888764
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0066 Score=54.17 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=68.8
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
.||+|+|+|++|+ ..++.|.+. +.+++ |+| .|.+++.+..++.+. .. ...+ ..+.+..++|
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d----------~~~~~~~~~a~~~g~-~~----~~~~-~~~~l~~~~D 65 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCT----------RNPKVLGTLATRYRV-SA----TCTD-YRDVLQYGVD 65 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EEC----------SCHHHHHHHHHHTTC-CC----CCSS-TTGGGGGCCS
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEE-EEe----------CCHHHHHHHHHHcCC-Cc----cccC-HHHHhhcCCC
Confidence 5899999999998 588888764 78999 999 678877776665431 10 0122 3334456899
Q ss_pred EEeeCCccCcccccchhc-c--CceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccc
Q psy14499 137 ILIPAAIEDQITINNANN-V--TAKIILEGANGPT--T-TEAD---DILRDKGIILAPDV 187 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~-~--~~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~ 187 (262)
+++-|++.. .+.+.+.. + ...+++|- |+ + .+++ +..+++|+.+...+
T Consensus 66 ~V~i~tp~~-~h~~~~~~al~~Gk~V~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~~ 121 (323)
T 1xea_A 66 AVMIHAATD-VHSTLAAFFLHLGIPTFVDK---PLAASAQECENLYELAEKHHQPLYVGF 121 (323)
T ss_dssp EEEECSCGG-GHHHHHHHHHHTTCCEEEES---CSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCch-hHHHHHHHHHHCCCeEEEeC---CCcCCHHHHHHHHHHHHhcCCeEEEee
Confidence 999999754 34444432 2 23477873 43 3 3333 34467888776443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=48.65 Aligned_cols=42 Identities=19% Similarity=0.383 Sum_probs=33.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
.+++|+|.|.|.+|+.+++.|.+.| .+|+ ++| .+.+++....
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-~~~----------r~~~~~~~~~ 46 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVT-VAD----------HDLAALAVLN 46 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEE-EEE----------SCHHHHHHHH
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEE-EEe----------CCHHHHHHHH
Confidence 4679999999999999999999999 7766 666 3566655544
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.014 Score=53.22 Aligned_cols=96 Identities=19% Similarity=0.356 Sum_probs=59.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHHh---cCCccC----C-C-----Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF---TRSIKD----F-N-----EGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~---~g~~~~----~-~-----~~~ 122 (262)
.||+|.|||.+|+.++|+|.+. ...+++|.|. .|++.+..+.+. .|.+.+ . + +++
T Consensus 2 ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~---------~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~ 72 (337)
T 1rm4_O 2 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT---------GGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGK 72 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECT---------TCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTE
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcC---------CCHHHHHHHhcccccCCCccceeEEecCCeEEECCe
Confidence 4899999999999999999876 5799999883 477766555442 222111 0 1 111
Q ss_pred e---c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 123 K---I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 123 ~---~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
. . .+++++ | +.++|++++|++ ...+.+.+..+ .+|.|.=+|
T Consensus 73 ~i~v~~~~dp~~i~w~~~gvDiV~eatg-~~~s~e~a~~~l~~Gak~V~iSa 123 (337)
T 1rm4_O 73 VIKVVSDRNPVNLPWGDMGIDLVIEGTG-VFVDRDGAGKHLQAGAKKVLITA 123 (337)
T ss_dssp EEEEECCSCGGGSCHHHHTCCEEEECSS-SCCBHHHHHHHHHTTCSEEEESS
T ss_pred EEEEEecCChhhCcccccCCCEEEECCC-chhhHHHHHHHHHcCCEEEEECC
Confidence 1 1 113333 3 348999999985 44455555554 466555444
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=62.11 Aligned_cols=129 Identities=11% Similarity=0.093 Sum_probs=82.1
Q ss_pred CCCeEEEEcC----CHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 57 INSKISIQGF----GNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 57 ~~~~v~IqGf----G~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
+..||+|+|+ |.+|...++.|.+. ++++++|+| .|.+++.+..++.+. +....+++.+++
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d----------~~~~~~~~~a~~~g~----~~~~~~~~~~~l 84 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYS----------PKIETSIATIQRLKL----SNATAFPTLESF 84 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEEC----------SSHHHHHHHHHHTTC----TTCEEESSHHHH
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEe----------CCHHHHHHHHHHcCC----CcceeeCCHHHH
Confidence 4579999999 99999999999886 789999999 678877776665431 122334445667
Q ss_pred cc-cCceEEeeCCccCcccccchhcc---C------ceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccccccchhh
Q psy14499 131 WS-IPCDILIPAAIEDQITINNANNV---T------AKIILEGANGPT--T-TEAD---DILRDKGIILAPDVITNAGGV 194 (262)
Q Consensus 131 l~-~~~DIlipaa~~~~it~e~a~~~---~------~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~~aN~GGv 194 (262)
+. .++|+++-|++.. .+.+.+... . ..+++|= |+ + .+++ +..+++|+.+...+.----..
T Consensus 85 l~~~~vD~V~i~tp~~-~H~~~~~~al~aG~~~~~~khVl~EK---P~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~ 160 (438)
T 3btv_A 85 ASSSTIDMIVIAIQVA-SHYEVVMPLLEFSKNNPNLKYLFVEW---ALACSLDQAESIYKAAAERGVQTIISLQGRKSPY 160 (438)
T ss_dssp HHCSSCSEEEECSCHH-HHHHHHHHHHHHGGGCTTCCEEEEES---SCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHH
T ss_pred hcCCCCCEEEEeCCcH-HHHHHHHHHHHCCCCcccceeEEecC---cccCCHHHHHHHHHHHHHcCCeEEEecccccCHH
Confidence 74 5899999999753 333433332 3 3488883 44 3 3343 334678887765443333333
Q ss_pred HHHHHHHHh
Q psy14499 195 IVSYFEWVQ 203 (262)
Q Consensus 195 i~s~~E~~~ 203 (262)
+....++++
T Consensus 161 ~~~~k~~i~ 169 (438)
T 3btv_A 161 ILRAKELIS 169 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444443
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0033 Score=56.22 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+..||+|+|+|++|+..++.|.+ .+.++++|+| .|++++.+ .| +. + ..+ +++++ .+
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d----------~~~~~~~~----~g-~~-~---~~~---~~l~~~~~ 65 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVR----------RNPAEVPF----EL-QP-F---RVV---SDIEQLES 65 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEEC----------C-----------CC-TT-S---CEE---SSGGGSSS
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEc----------CCHHHHHH----cC-CC-c---CCH---HHHHhCCC
Confidence 45799999999999999999987 5799999998 34444322 11 11 1 112 22322 58
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCC-CCCCHH---HHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGAN-GPTTTE---ADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN-~p~t~e---a~~~l~~rgi~~i 184 (262)
+|+++.|++... +.+.+... ...+|+|-.- .+...+ ..+..+++|+.++
T Consensus 66 ~DvViiatp~~~-h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~ 121 (304)
T 3bio_A 66 VDVALVCSPSRE-VERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAV 121 (304)
T ss_dssp CCEEEECSCHHH-HHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEECCCchh-hHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 999999997533 33433332 4556766221 122222 3344567787654
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0081 Score=53.93 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC----ceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE----GEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~----~~~~~~~~~il~ 132 (262)
...+|.|+|.|++|..++..|.+.|..|+ +.| .+.+++..+.++...+ ..|+ ....+++.+ .
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~-~~~----------r~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~-~- 78 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHENGEEVI-LWA----------RRKEIVDLINVSHTSP-YVEESKITVRATNDLEE-I- 78 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHHSCBT-TBTTCCCCSEEESCGGG-C-
T ss_pred cCCcEEEECcCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHHHhCCcc-cCCCCeeeEEEeCCHHH-h-
Confidence 56899999999999999999999999876 666 3566665555543222 1122 222332444 3
Q ss_pred cCceEEeeCCccCcccccchhcc--CceEEEecCCC
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAKIILEGANG 166 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~ 166 (262)
.++|++|-|-.. ....+.+..+ ..++|+...|+
T Consensus 79 ~~aDvVil~vk~-~~~~~v~~~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 79 KKEDILVIAIPV-QYIREHLLRLPVKPSMVLNLSKG 113 (335)
T ss_dssp CTTEEEEECSCG-GGHHHHHTTCSSCCSEEEECCCC
T ss_pred cCCCEEEEECCH-HHHHHHHHHhCcCCCEEEEEeCC
Confidence 489999998775 3334444444 45689999986
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.03 Score=53.76 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHhC---------CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHH
Q psy14499 37 TGRGVFIIGSKIASKIN---------LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQK 107 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g---------~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~ 107 (262)
.+.|...+++.+++..+ .++++++++|.|.|.+|+++++.|.+.|++|+ +++ -+.+++.+
T Consensus 334 D~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~-i~~----------R~~~~a~~ 402 (523)
T 2o7s_A 334 DCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVV-IAN----------RTYERALE 402 (523)
T ss_dssp HHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CE-EEE----------SSHHHHHH
T ss_pred CHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHH
Confidence 34477777776643222 35788999999999999999999999999876 766 35666666
Q ss_pred HHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcc---cccchhc--c-CceEEEecCCCCC-CHHHHHHHHHCC
Q psy14499 108 YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQI---TINNANN--V-TAKIILEGANGPT-TTEADDILRDKG 180 (262)
Q Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~i---t~e~a~~--~-~~kiIve~AN~p~-t~ea~~~l~~rg 180 (262)
..++.+. ....+++.+++...++|++|.|+.-..- +..+... + ....+++-.-.|. ||-..+. +++|
T Consensus 403 la~~~~~-----~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a-~~~G 476 (523)
T 2o7s_A 403 LAEAIGG-----KALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA-EESG 476 (523)
T ss_dssp HHHHTTC------CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHH-HTTT
T ss_pred HHHHcCC-----ceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHH-HHCC
Confidence 5554321 1111221112111358999999864321 1112211 1 3467888755554 6554333 5578
Q ss_pred CeEe
Q psy14499 181 IILA 184 (262)
Q Consensus 181 i~~i 184 (262)
..++
T Consensus 477 ~~~i 480 (523)
T 2o7s_A 477 AITV 480 (523)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00047 Score=61.22 Aligned_cols=118 Identities=14% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC-CceecCCCccccc
Q psy14499 56 IINSKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN-EGEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~-~~~~~~~~~~il~ 132 (262)
++-+||+|.| +|.+|+.+++.+.+ .+++++++.|+++.-+ .|.|..++. +.+ +....++.++++.
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~--~G~d~gel~----------g~~~gv~v~~dl~~ll~ 72 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQ--LGQDAGAFL----------GKQTGVALTDDIERVCA 72 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTT--TTSBTTTTT----------TCCCSCBCBCCHHHHHH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccc--ccccHHHHh----------CCCCCceecCCHHHHhc
Confidence 3457999999 89999999998876 5899999999754211 244543322 111 2222233445564
Q ss_pred cCceEEeeCCccCcccccchhc---cCceEEEecCCCCCCHHHHHHHHH----CCCeEeccccc
Q psy14499 133 IPCDILIPAAIEDQITINNANN---VTAKIILEGANGPTTTEADDILRD----KGIILAPDVIT 189 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p~t~ea~~~l~~----rgi~~iPD~~a 189 (262)
++||+|+++.+... .+++.. -+.++|+.-. .++++..+.|++ .++++.|.|..
T Consensus 73 -~~DVVIDfT~p~a~-~~~~~~al~~G~~vVigTT--G~s~~~~~~L~~aa~~~~vv~a~N~s~ 132 (272)
T 4f3y_A 73 -EADYLIDFTLPEGT-LVHLDAALRHDVKLVIGTT--GFSEPQKAQLRAAGEKIALVFSANMSV 132 (272)
T ss_dssp -HCSEEEECSCHHHH-HHHHHHHHHHTCEEEECCC--CCCHHHHHHHHHHTTTSEEEECSCCCH
T ss_pred -CCCEEEEcCCHHHH-HHHHHHHHHcCCCEEEECC--CCCHHHHHHHHHHhccCCEEEECCCCH
Confidence 79999999965433 233332 3556776432 367765444533 45666666644
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.002 Score=59.15 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=54.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC---Ccccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND---SKEFW 131 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~---~~~il 131 (262)
.+.+++|+|+|+|.+|+.+++.+..+|++|+ +.| .+.+++....+..+.- + .....+ .++.+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~-~~d----------~~~~~~~~~~~~~g~~--~--~~~~~~~~~l~~~~ 227 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMGAQVT-ILD----------VNHKRLQYLDDVFGGR--V--ITLTATEANIKKSV 227 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHTTTS--E--EEEECCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHhcCce--E--EEecCCHHHHHHHH
Confidence 3788999999999999999999999999877 667 4666655544433210 0 000110 11233
Q ss_pred ccCceEEeeCCccC------cccccchhcc
Q psy14499 132 SIPCDILIPAAIED------QITINNANNV 155 (262)
Q Consensus 132 ~~~~DIlipaa~~~------~it~e~a~~~ 155 (262)
.++|++|.|+... .++.+..+.+
T Consensus 228 -~~~DvVi~~~g~~~~~~~~li~~~~l~~m 256 (369)
T 2eez_A 228 -QHADLLIGAVLVPGAKAPKLVTRDMLSLM 256 (369)
T ss_dssp -HHCSEEEECCC-------CCSCHHHHTTS
T ss_pred -hCCCEEEECCCCCccccchhHHHHHHHhh
Confidence 3799999998643 2455556655
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0017 Score=59.53 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=29.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
.||+|.|||.+|+.+++.|.+. ++.+++|+|.
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~ 35 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKT 35 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEES
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC
Confidence 5899999999999999999876 6999999994
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.016 Score=53.77 Aligned_cols=96 Identities=18% Similarity=0.351 Sum_probs=57.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---------CCcee
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---------NEGEK 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---------~~~~~ 123 (262)
.||+|.|||.+|+.+++.|.+. +..+++|.|. .|++.+..+.+ ..|.+.+- .+.+.
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~---------~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~ 73 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT---------SDARTAAHLLEYDSVLGRFNADISYDENSITVNGKT 73 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECS---------SCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEE
T ss_pred cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecC---------CCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeE
Confidence 5899999999999999999876 4899999883 36665544443 22222110 01111
Q ss_pred ---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 ---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 ---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. +++++ | +.++|++++|+.. ..+.+.+... .+| +|+.+.
T Consensus 74 i~v~~~~dp~~l~w~~~gvDvV~e~TG~-f~s~e~a~~hl~aGakkVVIs~p 124 (380)
T 2d2i_A 74 MKIVCDRNPLNLPWKEWDIDLVIESTGV-FVTAEGASKHIQAGAKKVLITAP 124 (380)
T ss_dssp EEEECCSCGGGCCHHHHTCCEEEECSSS-CCBHHHHHHHHHTTCSEEEESSC
T ss_pred EEEEecCChHHCCcccCCCCEEEECCCc-cccHHHHHHHHHcCCcEEEEcCC
Confidence 11 23343 3 2488999999864 3455555554 455 555544
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00098 Score=60.59 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=57.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-Ccc-CCCCc---------eecCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIK-DFNEG---------EKIND 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~-~~~~~---------~~~~~ 126 (262)
.||+|+|||.+|+.+++.|.+. +.++++|+|+ +++.+.+..+..| ++- .|++. ....+
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~----------~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d 72 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT----------KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGT 72 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES----------SCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCB
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcC----------CHHHHHHHHHhcCccccccccccceeccCCceEEcCc
Confidence 5899999999999999999875 6899999994 3233333333222 110 01100 11112
Q ss_pred CccccccCceEEeeCCccCcccccchhcc---CceEEEecCC
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGAN 165 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN 165 (262)
.++++. ++|+++.|++... +.+.+... .+++|+++..
T Consensus 73 ~~~l~~-~vDvV~~aTp~~~-h~~~a~~~l~aGk~Vi~sap~ 112 (334)
T 2czc_A 73 LNDLLE-KVDIIVDATPGGI-GAKNKPLYEKAGVKAIFQGGE 112 (334)
T ss_dssp HHHHHT-TCSEEEECCSTTH-HHHHHHHHHHHTCEEEECTTS
T ss_pred HHHhcc-CCCEEEECCCccc-cHHHHHHHHHcCCceEeeccc
Confidence 344554 8999999997543 33333332 6778887654
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.022 Score=51.97 Aligned_cols=96 Identities=18% Similarity=0.361 Sum_probs=58.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC----C-----Cce-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF----N-----EGE- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~----~-----~~~- 122 (262)
.||+|.|||.+|+.++++|.+. ...+++|.|. .|++.+..+.+ ..|.+.+- . +.+
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~---------~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~ 73 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNT---------SDARTAAHLLEYDSVLGRFNADISYDENSITVNGKT 73 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECS---------SCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEE
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecC---------CCHHHHHHHhccccccCCCCCcEEEcCCeeeecCce
Confidence 5899999999999999999886 4899999883 36665544433 22222110 0 011
Q ss_pred --ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 --KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 --~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. .+++++ | +.++|++++|++. ..+.+.+..+ .+| +|+.+.
T Consensus 74 i~v~~~~dp~~l~w~~~~vDvV~e~tg~-~~s~e~a~~~l~~GakkVVId~~ 124 (339)
T 3b1j_A 74 MKIVCDRNPLNLPWKEWDIDLVIESTGV-FVTAEGASKHIQAGAKKVLITAP 124 (339)
T ss_dssp EEEECCSCGGGSCTTTTTCCEEEECSSS-CCBHHHHHHHHHTTCSEEEESSC
T ss_pred EEEEecCChHHCcccccCCCEEEECCCc-cccHHHHHHHHHcCCcEEEEeCC
Confidence 11 123343 3 2589999999864 3455555554 455 555544
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0022 Score=58.53 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-- 132 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-- 132 (262)
+-+.+||+|.|.|.||+.+++.|.+ ...|. ++| .+.+++.+..+....+. . + +.+.+++.+
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~-~~~----------~~~~~~~~~~~~~~~~~-~-d---~~d~~~l~~~~ 75 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVY-IGD----------VNNENLEKVKEFATPLK-V-D---ASNFDKLVEVM 75 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTT-TSEEE-EEE----------SCHHHHHHHTTTSEEEE-C-C---TTCHHHHHHHH
T ss_pred cCCccEEEEECCCHHHHHHHHHHhc-CCCeE-EEE----------cCHHHHHHHhccCCcEE-E-e---cCCHHHHHHHH
Confidence 3356689999999999999999976 45655 777 67777665543211110 0 1 111222222
Q ss_pred cCceEEeeCCccCcccccchhcc--CceEEEecCCCCC-CHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAKIILEGANGPT-TTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~-t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
.++|++|-|.+.. .+...++.. ..+.+++.+..+- ..+..+..+++|+.++|+.=.. -|+..
T Consensus 76 ~~~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~-PG~~~ 140 (365)
T 3abi_A 76 KEFELVIGALPGF-LGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFA-PGLSN 140 (365)
T ss_dssp TTCSEEEECCCGG-GHHHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTT-TBHHH
T ss_pred hCCCEEEEecCCc-ccchHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCC-CchHH
Confidence 4899999998765 344333332 2346777665543 3455677789999999876443 34443
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.005 Score=58.56 Aligned_cols=129 Identities=11% Similarity=0.108 Sum_probs=83.0
Q ss_pred CCCeEEEEcC----CHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 57 INSKISIQGF----GNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 57 ~~~~v~IqGf----G~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
+..||+|+|+ |.+|+..++.|.+. ++++++|+| .|.++..+..++.+ .+....+++.+++
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d----------~~~~~a~~~a~~~g----~~~~~~~~d~~el 103 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYN----------PTLKSSLQTIEQLQ----LKHATGFDSLESF 103 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEEC----------SCHHHHHHHHHHTT----CTTCEEESCHHHH
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEe----------CCHHHHHHHHHHcC----CCcceeeCCHHHH
Confidence 4579999999 99999999999885 789999999 67887777766543 1222334445677
Q ss_pred cc-cCceEEeeCCccCcccccchhcc---C------ceEEEecCCCCC--C-HHHHH---HHHHCC-CeEeccccccchh
Q psy14499 131 WS-IPCDILIPAAIEDQITINNANNV---T------AKIILEGANGPT--T-TEADD---ILRDKG-IILAPDVITNAGG 193 (262)
Q Consensus 131 l~-~~~DIlipaa~~~~it~e~a~~~---~------~kiIve~AN~p~--t-~ea~~---~l~~rg-i~~iPD~~aN~GG 193 (262)
+. .++|+++-|++.. .+.+.+... . ..+++|= |+ + .|+++ ..+++| +.+...+.----.
T Consensus 104 l~~~~vD~V~I~tp~~-~H~~~~~~al~aG~~~~~~khVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~~p 179 (479)
T 2nvw_A 104 AQYKDIDMIVVSVKVP-EHYEVVKNILEHSSQNLNLRYLYVEW---ALAASVQQAEELYSISQQRANLQTIICLQGRKSP 179 (479)
T ss_dssp HHCTTCSEEEECSCHH-HHHHHHHHHHHHSSSCSSCCEEEEES---SSSSSHHHHHHHHHHHHTCTTCEEEEECGGGGCH
T ss_pred hcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCCcCCceeEEEeC---CCcCCHHHHHHHHHHHHHcCCeEEEEEeccccCH
Confidence 74 5899999999743 344444332 3 3488874 54 3 34433 346788 7776544444444
Q ss_pred hHHHHHHHHh
Q psy14499 194 VIVSYFEWVQ 203 (262)
Q Consensus 194 vi~s~~E~~~ 203 (262)
.+.-..++++
T Consensus 180 ~~~~~k~~i~ 189 (479)
T 2nvw_A 180 YIVRAKELIS 189 (479)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4433444443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0033 Score=59.44 Aligned_cols=120 Identities=13% Similarity=0.174 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc---ccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK---EFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~---~il~~ 133 (262)
++++|+|.|.|.+|+.+++.|.+.|++|+ ++| .+.+++.+..++.+.+.... . .+.+.+ +++ .
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~-v~~----------R~~~~a~~la~~~~~~~~~~-~-Dv~d~~~l~~~l-~ 67 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VAC----------RTLESAKKLSAGVQHSTPIS-L-DVNDDAALDAEV-A 67 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEE----------SSHHHHHHTTTTCTTEEEEE-C-CTTCHHHHHHHH-T
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEE-EEE----------CCHHHHHHHHHhcCCceEEE-e-ecCCHHHHHHHH-c
Confidence 56899999999999999999999999865 777 35565544433222110000 0 011111 233 3
Q ss_pred CceEEeeCCccCcccccchhc-cC--ceEEEecCCCCCCHHHHHHHHHCCCeEeccccccc
Q psy14499 134 PCDILIPAAIEDQITINNANN-VT--AKIILEGANGPTTTEADDILRDKGIILAPDVITNA 191 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~-~~--~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~ 191 (262)
++|++|-|++... +.+.+.. ++ ..++.+....|.+.+..+..+++|+.+++.+-...
T Consensus 68 ~~DvVIn~a~~~~-~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~~p 127 (450)
T 1ff9_A 68 KHDLVISLIPYTF-HATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDP 127 (450)
T ss_dssp TSSEEEECCC--C-HHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBBTT
T ss_pred CCcEEEECCcccc-chHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCCcC
Confidence 8999999997532 2222211 22 34555543333334445666789999887665543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.082 Score=49.84 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=27.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D 89 (262)
++|+|+|.|.||..+|..|.+. |.+|+ +.|
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~-~~d 37 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVT-VVD 37 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEE-EEC
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEE
Confidence 5899999999999999999998 78987 667
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0019 Score=59.52 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc--CCCCceecCCCccccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK--DFNEGEKINDSKEFWS 132 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~--~~~~~~~~~~~~~il~ 132 (262)
++.+++|+|+|+|.+|+.+++.+..+|++|+ +.| .+.+++....+..+.-. .+.... + ..+.+
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~-~~d----------~~~~~l~~~~~~~g~~~~~~~~~~~--~-l~~~l- 229 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANGMGATVT-VLD----------INIDKLRQLDAEFCGRIHTRYSSAY--E-LEGAV- 229 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHTTTSSEEEECCHH--H-HHHHH-
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEe----------CCHHHHHHHHHhcCCeeEeccCCHH--H-HHHHH-
Confidence 4789999999999999999999999999877 667 46666555444332110 000000 1 12333
Q ss_pred cCceEEeeCCcc------CcccccchhccC-ceEEEecC
Q psy14499 133 IPCDILIPAAIE------DQITINNANNVT-AKIILEGA 164 (262)
Q Consensus 133 ~~~DIlipaa~~------~~it~e~a~~~~-~kiIve~A 164 (262)
.++|++|.|+.. ..++.+....++ ..+|+.-+
T Consensus 230 ~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 230 KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 379999998742 234566666663 22444443
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.042 Score=50.26 Aligned_cols=99 Identities=16% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee-
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK- 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~- 123 (262)
+..||.|.|||.+|+.++|.+.+.+.+||+|-|. -+|++.+.-+.+ .+|.+.+- . +++.
T Consensus 6 ~~~kvgInGFGRIGrlv~R~~~~~~veivainDp--------~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I 77 (346)
T 3h9e_O 6 RELTVGINGFGRIGRLVLRACMEKGVKVVAVNDP--------FIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEI 77 (346)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEECT--------TCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEE
T ss_pred CeeEEEEECCChHHHHHHHHHHhCCCEEEEEeCC--------CCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEE
Confidence 4569999999999999999999889999988773 147776554443 23333210 0 1111
Q ss_pred --c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 --I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 --~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
. .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 78 ~v~~e~dp~~i~W~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkVVIsap 127 (346)
T 3h9e_O 78 SVYQCKEPKQIPWRAVGSPYVVESTG-VYLSIQAASDHISAGAQRVVISAP 127 (346)
T ss_dssp EEECCSSGGGCCGGGGTSCEEEECSS-SCCSHHHHHHHHHTTCSEEEESSC
T ss_pred EEEecCChhhCCcccccccEEEEecc-ccCCHHHHHHHHHcCCCEEEECCC
Confidence 1 013332 2 458999999985 44566665554 453 777654
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.016 Score=53.32 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=60.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHH---HHhcCCccCCC---------Cce--
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKY---VTFTRSIKDFN---------EGE-- 122 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~---~~~~g~~~~~~---------~~~-- 122 (262)
-.||+|.|||.+|+.++|+|.+. ...|++|.|.. .|++.+..+ ...+|.+.+.- +.+
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~--------~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i 88 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPF--------MDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVV 88 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTT--------SCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEE
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCC--------CChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEE
Confidence 36999999999999999999886 79999998821 355533332 22233332210 011
Q ss_pred -ecC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 -KIN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 -~~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
... +++++ | +.++|++++|++ ...+.+.+..+ .+| +|+.+.
T Consensus 89 ~v~~~~dp~~i~w~~~~vDvV~eatg-~~~s~e~a~~~l~~GakkvVId~p 138 (354)
T 3cps_A 89 KVFQAKDPAEIPWGASGAQIVCESTG-VFTTEEKASLHLKGGAKKVIISAP 138 (354)
T ss_dssp EEECCSCGGGCCHHHHTCCEEEECSS-SCCSHHHHGGGGTTTCSEEEESSC
T ss_pred EEEecCChHHCCcccCCCCEEEECCC-chhhHHHHHHHHHcCCcEEEEeCC
Confidence 111 23333 2 358999999986 44556666655 353 777664
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0028 Score=57.07 Aligned_cols=93 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
+..||+|+|+|++|+..++.|.+. +.++++++|.+.. . ... + +...+++.++++ .++
T Consensus 2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~-----~-~~~--------------~-gv~~~~d~~~ll-~~~ 59 (320)
T 1f06_A 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRAT-----L-DTK--------------T-PVFDVADVDKHA-DDV 59 (320)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSC-----C-SSS--------------S-CEEEGGGGGGTT-TTC
T ss_pred CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHH-----H-hhc--------------C-CCceeCCHHHHh-cCC
Confidence 457999999999999999999876 7899999985311 0 000 1 122233345566 689
Q ss_pred eEEeeCCccCcccccchhc-c--CceEEEecCCCCCCHHH
Q psy14499 136 DILIPAAIEDQITINNANN-V--TAKIILEGANGPTTTEA 172 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~-~--~~kiIve~AN~p~t~ea 172 (262)
|+++.|+.... +.+.+.. + ...+|+|-.-....++.
T Consensus 60 DvViiatp~~~-h~~~~~~al~aG~~Vv~ekp~~~~~~~~ 98 (320)
T 1f06_A 60 DVLFLCMGSAT-DIPEQAPKFAQFACTVDTYDNHRDIPRH 98 (320)
T ss_dssp SEEEECSCTTT-HHHHHHHHHTTTSEEECCCCCGGGHHHH
T ss_pred CEEEEcCCcHH-HHHHHHHHHHCCCEEEECCCCcCCHHHH
Confidence 99999997654 3333332 2 34466654333233444
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.024 Score=51.62 Aligned_cols=96 Identities=19% Similarity=0.384 Sum_probs=58.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC----------CCc-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF----------NEG- 121 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~----------~~~- 121 (262)
.||+|.|||.+|+.++|+|.++ ...|++|.|. .|++.+-.+.+ .+|.+.+- .+.
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~---------~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~ 71 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL---------TDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS---------SCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEE
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcC---------CChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeE
Confidence 4899999999999999998775 5899999883 26665444432 23332110 010
Q ss_pred -eecC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 122 -EKIN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 122 -~~~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+... +++++ | +.++|++++|++ ...+.+.++.+ .+| +|+.+.
T Consensus 72 i~v~~~~dp~~l~w~~~~vDvV~~atg-~~~s~e~a~~~l~aGakkvVId~~ 122 (332)
T 1hdg_O 72 IKVFAEPDPSKLPWKDLGVDFVIESTG-VFRNREKAELHLQAGAKKVIITAP 122 (332)
T ss_dssp EEEECCSSGGGSCHHHHTCCEEEECSS-SCCBHHHHTHHHHTTCSEEEESSC
T ss_pred EEEEecCChHHCcccccCCCEEEECCc-cchhHHHHHHHHHcCCcEEEEeCC
Confidence 1111 13333 2 247999999985 44556666555 453 677654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0068 Score=53.15 Aligned_cols=87 Identities=14% Similarity=0.194 Sum_probs=57.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|.|+|+ |++|+.+++.|.+.|..|+ +.| .+.+.+.+..+ .| + ...+ ..+.+ .+||+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~----------r~~~~~~~~~~-~g-~------~~~~-~~~~~-~~aDv 70 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIE----------IAPEGRDRLQG-MG-I------PLTD-GDGWI-DEADV 70 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEE-EEC----------CSHHHHHHHHH-TT-C------CCCC-SSGGG-GTCSE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHh-cC-C------CcCC-HHHHh-cCCCE
Confidence 58999999 9999999999999999887 767 45666555544 22 1 1112 33444 47999
Q ss_pred EeeCCccCcccccchhc----c-CceEEEecCCCC
Q psy14499 138 LIPAAIEDQITINNANN----V-TAKIILEGANGP 167 (262)
Q Consensus 138 lipaa~~~~it~e~a~~----~-~~kiIve~AN~p 167 (262)
+|.|.+.+.+ .+.... + +.++|+..+++.
T Consensus 71 Vi~av~~~~~-~~v~~~l~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 71 VVLALPDNII-EKVAEDIVPRVRPGTIVLILDAAA 104 (286)
T ss_dssp EEECSCHHHH-HHHHHHHGGGSCTTCEEEESCSHH
T ss_pred EEEcCCchHH-HHHHHHHHHhCCCCCEEEECCCCc
Confidence 9998876542 333322 2 245777766654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0041 Score=54.71 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
++|+|+|.|.+|+.+|+.|.+.|++|+ +.| .+.+.+.+..
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~-l~d----------~~~~~~~~~~ 44 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVT-AYD----------INTDALDAAK 44 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEe----------CCHHHHHHHH
Confidence 689999999999999999999999987 777 5666555443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0037 Score=49.60 Aligned_cols=108 Identities=9% Similarity=0.087 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCC-HHHHHHHHHhc-CCccCC-CCceecCCCcccc--
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFN-IPKLQKYVTFT-RSIKDF-NEGEKINDSKEFW-- 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD-~~~l~~~~~~~-g~~~~~-~~~~~~~~~~~il-- 131 (262)
...+|+|.|+|.+|+.+++.|.+.|..|+ +.| -| .+++.+..+.. ..+.-+ .+. .+++.+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~-vid----------~~~~~~~~~~~~~~~~~~~~i~gd~---~~~~~l~~a 67 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVT-VIS----------NLPEDDIKQLEQRLGDNADVIPGDS---NDSSVLKKA 67 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------CCCHHHHHHHHHHHCTTCEEEESCT---TSHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEE-EEE----------CCChHHHHHHHHhhcCCCeEEEcCC---CCHHHHHHc
Confidence 45789999999999999999999999988 545 23 33332332211 101000 011 1011111
Q ss_pred -ccCceEEeeCCccCccc---ccchhcc-C-ceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 132 -SIPCDILIPAAIEDQIT---INNANNV-T-AKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 132 -~~~~DIlipaa~~~~it---~e~a~~~-~-~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
-.++|++|-|+..+..| ...++++ . .++|+- +|.| +-.+.|++.|+.
T Consensus 68 ~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~-~~~~---~~~~~l~~~G~~ 120 (153)
T 1id1_A 68 GIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLA-VSDS---KNLNKIKMVHPD 120 (153)
T ss_dssp TTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEE-CSSG---GGHHHHHTTCCS
T ss_pred ChhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEE-ECCH---HHHHHHHHcCCC
Confidence 14799999998765444 3445555 2 355553 3443 444567788875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0054 Score=54.53 Aligned_cols=94 Identities=14% Similarity=0.093 Sum_probs=64.8
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.-.+.|.+|+...++ +.+ ++|++++|+|.|+ ||+.+|++|...|++|+ +++++- -|+
T Consensus 130 ~~~PcTp~gv~~lL~----~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt-v~~~~t-------~~L-------- 187 (276)
T 3ngx_A 130 FLVPATPRAVIDIMD----YYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS-VCHSKT-------KDI-------- 187 (276)
T ss_dssp SSCCHHHHHHHHHHH----HHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECTTC-------SCH--------
T ss_pred CCCCCcHHHHHHHHH----HhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE-EEeCCc-------ccH--------
Confidence 456799999875544 446 9999999999986 89999999999999977 887421 111
Q ss_pred hcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCC
Q psy14499 111 FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 111 ~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p 167 (262)
.+.. ..+||+|-+.. .+.++++..+. ..+|++-+-.+
T Consensus 188 -----------------~~~~-~~ADIVI~Avg~p~~I~~~~vk~--GavVIDvgi~~ 225 (276)
T 3ngx_A 188 -----------------GSMT-RSSKIVVVAVGRPGFLNREMVTP--GSVVIDVGINY 225 (276)
T ss_dssp -----------------HHHH-HHSSEEEECSSCTTCBCGGGCCT--TCEEEECCCEE
T ss_pred -----------------HHhh-ccCCEEEECCCCCccccHhhccC--CcEEEEeccCc
Confidence 1222 36788887765 35777766532 33666655443
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.17 Score=48.18 Aligned_cols=32 Identities=38% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~-~vv~V~D 89 (262)
.-++|+|+|.|.||..+|..|.+. |. .|+ +.|
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~-~~D 50 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVL-GFQ 50 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEE-EEC
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEE-EEE
Confidence 346899999999999999999999 99 988 667
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.011 Score=54.97 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=67.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C----CCc-eecCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F----NEG-EKINDSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~----~~~-~~~~~~~ 128 (262)
++|+|+|.|.||..+|..|.+ |..|+ +.| .|.+++..+.+..-.+.+ + +.. ...++..
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~-~~d----------~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~ 68 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVT-IVD----------ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSK 68 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEE-EEC----------SCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEE-EEE----------CCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHH
Confidence 479999999999999999998 99987 567 566665555433211110 0 000 1111112
Q ss_pred cccccCceEEeeCCccCc----------ccccchhc---cC-ceEEE-ecCCCCCC-HHHHHHHHHCCCeEecccc
Q psy14499 129 EFWSIPCDILIPAAIEDQ----------ITINNANN---VT-AKIIL-EGANGPTT-TEADDILRDKGIILAPDVI 188 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~----------it~e~a~~---~~-~kiIv-e~AN~p~t-~ea~~~l~~rgi~~iPD~~ 188 (262)
+.+ .+||+++-|.++.. ...+.+.. ++ -++|+ +..|.|-+ .+..+.+.++.+.+-|.++
T Consensus 69 ~~~-~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~ 143 (402)
T 1dlj_A 69 AAY-KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFL 143 (402)
T ss_dssp HHH-HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCC
T ss_pred HHh-cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCccc
Confidence 223 37999999987653 01111111 32 34555 58888865 3444555555677777665
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0047 Score=55.06 Aligned_cols=96 Identities=16% Similarity=0.237 Sum_probs=68.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHH
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKY 108 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~ 108 (262)
.-.+.|.+|+. +++++.+.+++|++++|+|.|+ ||+-++++|.+. |++|+ +++++- -|
T Consensus 136 ~~~PcTp~gi~----~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVt-v~h~~t-------~~------- 196 (281)
T 2c2x_A 136 APLPCTPRGIV----HLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVT-LCHTGT-------RD------- 196 (281)
T ss_dssp CCCCHHHHHHH----HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEE-EECTTC-------SC-------
T ss_pred CCCCChHHHHH----HHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEE-EEECch-------hH-------
Confidence 34678988864 4556668999999999999997 699999999999 89977 775311 01
Q ss_pred HHhcCCccCCCCceecCCCccccccCceEEeeCCc-cCcccccchhccCceEEEecCCCC
Q psy14499 109 VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI-EDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 109 ~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~-~~~it~e~a~~~~~kiIve~AN~p 167 (262)
..+.+ .++||+|-|.. .+.++.+..+. .-+|++-+-.+
T Consensus 197 ------------------L~~~~-~~ADIVI~Avg~p~~I~~~~vk~--GavVIDVgi~r 235 (281)
T 2c2x_A 197 ------------------LPALT-RQADIVVAAVGVAHLLTADMVRP--GAAVIDVGVSR 235 (281)
T ss_dssp ------------------HHHHH-TTCSEEEECSCCTTCBCGGGSCT--TCEEEECCEEE
T ss_pred ------------------HHHHH-hhCCEEEECCCCCcccCHHHcCC--CcEEEEccCCC
Confidence 11222 47899998876 46788877643 34666666544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0044 Score=56.80 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=63.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce------ecCCCcc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE------KINDSKE 129 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~------~~~~~~~ 129 (262)
.+.++|+|+|.|++|..+|..|.+.|..|. +.| .|.+.+.++.+.......+|+.+ ..++..+
T Consensus 27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~-l~~----------r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~e 95 (356)
T 3k96_A 27 PFKHPIAILGAGSWGTALALVLARKGQKVR-LWS----------YESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKA 95 (356)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHTTTCCEE-EEC----------SCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHH
T ss_pred ccCCeEEEECccHHHHHHHHHHHHCCCeEE-EEe----------CCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHH
Confidence 345799999999999999999999999877 666 46666666655433222223221 1121223
Q ss_pred ccccCceEEeeCCccCcccc---cchhcc-CceEEEecCCCC
Q psy14499 130 FWSIPCDILIPAAIEDQITI---NNANNV-TAKIILEGANGP 167 (262)
Q Consensus 130 il~~~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p 167 (262)
.+ .++|++|.|.+...+.. +..+.+ .-.+|+...|+-
T Consensus 96 a~-~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi 136 (356)
T 3k96_A 96 SL-EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGL 136 (356)
T ss_dssp HH-TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSC
T ss_pred HH-hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 33 48999999987653321 122223 245788888864
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0036 Score=53.95 Aligned_cols=98 Identities=10% Similarity=0.197 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++++++|+|+|.|.||...++.|.+.|++|+ |.+. + ++ +++.++.++ +.+.-.. ..+. ++ .+ .
T Consensus 27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~Vt-Vvap-------~-~~-~~l~~l~~~-~~i~~i~--~~~~-~~-dL-~ 90 (223)
T 3dfz_A 27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAIT-VVAP-------T-VS-AEINEWEAK-GQLRVKR--KKVG-EE-DL-L 90 (223)
T ss_dssp ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEE-EECS-------S-CC-HHHHHHHHT-TSCEEEC--SCCC-GG-GS-S
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EECC-------C-CC-HHHHHHHHc-CCcEEEE--CCCC-Hh-Hh-C
Confidence 47999999999999999999999999999988 5442 2 33 334455443 2221100 0111 12 23 4
Q ss_pred CceEEeeCCccCcccccchhccCceEEEecCCCC
Q psy14499 134 PCDILIPAAIEDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p 167 (262)
++|++|-|+....+|...+..-+.++.|.-+..|
T Consensus 91 ~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p 124 (223)
T 3dfz_A 91 NVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSF 124 (223)
T ss_dssp SCSEEEECCCCTHHHHHHHHHSCTTCEEEC----
T ss_pred CCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 7999998876666655444333333444444443
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0054 Score=55.96 Aligned_cols=94 Identities=13% Similarity=0.243 Sum_probs=56.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC-----------ceecCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE-----------GEKIND 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~-----------~~~~~~ 126 (262)
.||+|.|||.+|+.+++.|.+. ++.+++|+|. ++........+.+ +.-|.+ ....++
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~----------~~~~~~~~a~~~g-~~~~~~~~~~~~~~~~~v~v~~~ 70 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKT----------SPNYEAFIAHRRG-IRIYVPQQSIKKFEESGIPVAGT 70 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS----------SCSHHHHHHHHTT-CCEECCGGGHHHHHTTTCCCCCC
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcC----------ChHHHHHHHHhcC-cceecCcCHHHHhcccccccccC
Confidence 4899999999999999999874 6899999993 2222222222211 000000 000111
Q ss_pred CccccccCceEEeeCCccCcccccchh---ccCceEEEecCC
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNAN---NVTAKIILEGAN 165 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~---~~~~kiIve~AN 165 (262)
.++++ .++|+++.|++.. .+.+.+. +-.+++|.-+++
T Consensus 71 ~e~l~-~~vDvV~~aTp~~-~s~~~a~~~~~aG~kvV~~sa~ 110 (340)
T 1b7g_O 71 VEDLI-KTSDIVVDTTPNG-VGAQYKPIYLQLQRNAIFQGGE 110 (340)
T ss_dssp HHHHH-HHCSEEEECCSTT-HHHHHHHHHHHTTCEEEECTTS
T ss_pred HhHhh-cCCCEEEECCCCc-hhHHHHHHHHHcCCeEEEeCCC
Confidence 12222 3799999998643 3444554 336788888887
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0057 Score=51.65 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=58.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+.++|.|+|+|++|+.+++.|.+.|.+|+ +.| -+.+++.+..+. +.+..+ ..+.+ .++|
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~-~~~----------r~~~~~~~~~~~--------g~~~~~-~~~~~-~~~D 85 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVV-VGS----------RNPKRTARLFPS--------AAQVTF-QEEAV-SSPE 85 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------SSHHHHHHHSBT--------TSEEEE-HHHHT-TSCS
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc--------CCceec-HHHHH-hCCC
Confidence 45789999999999999999999999877 566 355555444322 112112 33444 4899
Q ss_pred EEeeCCccCcccccch---hccCceEEEecCCCCC
Q psy14499 137 ILIPAAIEDQITINNA---NNVTAKIILEGANGPT 168 (262)
Q Consensus 137 Ilipaa~~~~it~e~a---~~~~~kiIve~AN~p~ 168 (262)
+++.|.....+ .+.. ..++.++|+.-+|+..
T Consensus 86 vVi~av~~~~~-~~v~~l~~~~~~~~vv~~s~g~~ 119 (215)
T 2vns_A 86 VIFVAVFREHY-SSLCSLSDQLAGKILVDVSNPTE 119 (215)
T ss_dssp EEEECSCGGGS-GGGGGGHHHHTTCEEEECCCCCH
T ss_pred EEEECCChHHH-HHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999876433 2221 1225668898888753
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.03 Score=51.07 Aligned_cols=96 Identities=20% Similarity=0.344 Sum_probs=59.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~ 122 (262)
.||+|.|||.+|+.+++.|.+. ...+|+|.|. .|++-+..+.+ .+|.+.+ +. +++
T Consensus 2 ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~---------~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~ 72 (335)
T 1obf_O 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL---------GDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGD 72 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS---------SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCC---------CCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCE
Confidence 4899999999999999999876 6899999993 36765544433 2222211 00 111
Q ss_pred e---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 K---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ~---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
. .. +++++ | +.++|++++|+. ...+.+.+... .|| +|+.+.
T Consensus 73 ~i~v~~~~dp~~~~w~~~gvDiV~estG-~f~s~e~a~~h~~aGakkVviSap 124 (335)
T 1obf_O 73 KIRVDANRNPAQLPWGALKVDVVLECTG-FFTTKEKAGAHIKGGAKKVIISAP 124 (335)
T ss_dssp EEEEECCSCGGGSCTTTTTCSEEEECSS-SCCSHHHHHHHHHHTCSEEEESSC
T ss_pred EEEEEEcCCcccCCccccCCCEEEEccC-ccccHHHHHHHHHcCCCEEEECCc
Confidence 1 11 12232 3 358999999985 45566666655 565 666543
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.009 Score=54.00 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=73.6
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCc
Q psy14499 59 SKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~ 135 (262)
.||+|+|+|.+|+ ..+..|.+. ++++++|+|++ ..+++ .++.+ .++...+++.++++. .++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~---------~~~~~---a~~~~----~~~~~~~~~~~~ll~~~~~ 66 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH---------VNEKA---AAPFK----EKGVNFTADLNELLTDPEI 66 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT---------CCHHH---HHHHH----TTTCEEESCTHHHHSCTTC
T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC---------HHHHH---HHhhC----CCCCeEECCHHHHhcCCCC
Confidence 6899999999998 577777664 89999999954 11222 22211 123444555677775 479
Q ss_pred eEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHHHHHH
Q psy14499 136 DILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSYFEWV 202 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~ 202 (262)
|+++-|++. ..+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.---...+....+++
T Consensus 67 D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i 138 (349)
T 3i23_A 67 ELITICTPA-HTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVV 138 (349)
T ss_dssp CEEEECSCG-GGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHH
T ss_pred CEEEEeCCc-HHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHH
Confidence 999999975 3444444433 444777532111124443 33467888776444333333333333443
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.016 Score=53.93 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=83.1
Q ss_pred CCCCeEEEEcCCH---HHHHHHHHHHHCC-CEEEE-EeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 56 IINSKISIQGFGN---VGSVAANLFFKAG-AKIVA-IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 56 l~~~~v~IqGfG~---VG~~~a~~L~~~g-~~vv~-V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
++..||+|+|+|. +|+.-+..+...+ +++++ |+| .|+++..+..++.+- +....+++.+++
T Consensus 35 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d----------~~~~~a~~~a~~~g~----~~~~~~~~~~~l 100 (417)
T 3v5n_A 35 QKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALS----------STPEKAEASGRELGL----DPSRVYSDFKEM 100 (417)
T ss_dssp CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECC----------SSHHHHHHHHHHHTC----CGGGBCSCHHHH
T ss_pred CCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeC----------CCHHHHHHHHHHcCC----CcccccCCHHHH
Confidence 5678999999999 9998888777664 78886 889 688887777666531 111233435667
Q ss_pred cc------cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHH---HHHHCCCeEeccccccchhhHHHH
Q psy14499 131 WS------IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADD---ILRDKGIILAPDVITNAGGVIVSY 198 (262)
Q Consensus 131 l~------~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~---~l~~rgi~~iPD~~aN~GGvi~s~ 198 (262)
+. -++|+++-|++.. .+.+.+... ...+++|=.=.....++++ ..+++|+.+.-.+.----..+...
T Consensus 101 l~~~~~~~~~vD~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~ 179 (417)
T 3v5n_A 101 AIREAKLKNGIEAVAIVTPNH-VHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQA 179 (417)
T ss_dssp HHHHHHCTTCCSEEEECSCTT-SHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHH
T ss_pred HhcccccCCCCcEEEECCCcH-HHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHH
Confidence 64 3699999988754 445544443 4458888422222244443 346788877655554444444444
Q ss_pred HHHHh
Q psy14499 199 FEWVQ 203 (262)
Q Consensus 199 ~E~~~ 203 (262)
.++++
T Consensus 180 k~~i~ 184 (417)
T 3v5n_A 180 REMIE 184 (417)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0087 Score=53.90 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=31.5
Q ss_pred CCCCCeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~ 91 (262)
+++..||+|+|+|.+|+ ..++.|.+. ++++++|+|.+
T Consensus 22 ~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~ 60 (330)
T 4ew6_A 22 SMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH 60 (330)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSS
T ss_pred cCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 45678999999999998 678888774 89999999964
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.026 Score=51.39 Aligned_cols=96 Identities=22% Similarity=0.363 Sum_probs=59.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC----------CCCc--e
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD----------FNEG--E 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~----------~~~~--~ 122 (262)
.||+|.|||.+|+.+.|+|.+. ...|++|.|. .|++.+..+.+ .+|.+.+ +.+. +
T Consensus 2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~---------~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~ 72 (334)
T 3cmc_O 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL---------TDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEII 72 (334)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS---------SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC---------CCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEE
Confidence 4899999999999999999876 6899999883 25555444442 2222210 0011 1
Q ss_pred ec-C-CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 KI-N-DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ~~-~-~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. + +++++ | +.++|++++|++ ...+.+.++.+ .+| +|+.+.
T Consensus 73 v~~~~dp~~i~w~~~~vDvV~~atg-~~~s~e~a~~~l~~Gak~vVId~p 121 (334)
T 3cmc_O 73 VKAERDPENLAWGEIGVDIVVESTG-RFTKREDAAKHLEAGAKKVIISAP 121 (334)
T ss_dssp EECCSSGGGCCTGGGTCCEEEECSS-SCCBHHHHTHHHHTTCSEEEESSC
T ss_pred EEecCChhhcCcccCccCEEEECCC-chhhHHHHHHHHHCCCCEEEEeCC
Confidence 11 1 23333 3 248999999985 44566666655 453 677654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0066 Score=55.08 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=84.6
Q ss_pred CCCChhHHHHHHHHHHH--HH---HhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCc-eeeCCC-CCCHH
Q psy14499 32 GRQKATGRGVFIIGSKI--AS---KINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKT-TIYNPN-GFNIP 103 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~--~~---~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G-~i~~~~-GlD~~ 103 (262)
.-.+.|.+|++..++.. .. ..|.++.+++++|+|.|+ ||+.+|++|.+.|++|+ |+|.+. .++... -+-
T Consensus 146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVt-v~nR~~~~l~~ra~~la-- 222 (320)
T 1edz_A 146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNNIQKFTRGESLK-- 222 (320)
T ss_dssp CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSEEEEEESCCCSS--
T ss_pred CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEE-EEeCchHHHHhHHHHHh--
Confidence 45678998885444331 00 057899999999999996 69999999999999966 888643 222211 010
Q ss_pred HHHHHHHhcCCccCCCCceec-----CCCccccccCceEEeeCCcc-Cc-ccccchhccCceEEEecCCCC-CCHHHHHH
Q psy14499 104 KLQKYVTFTRSIKDFNEGEKI-----NDSKEFWSIPCDILIPAAIE-DQ-ITINNANNVTAKIILEGANGP-TTTEADDI 175 (262)
Q Consensus 104 ~l~~~~~~~g~~~~~~~~~~~-----~~~~~il~~~~DIlipaa~~-~~-it~e~a~~~~~kiIve~AN~p-~t~ea~~~ 175 (262)
.. ....+.+ ++..+.+ .++||+|-|+.. +. ++.+..+. ..+|++-+-.+ +.+++
T Consensus 223 ------~~------~~~~t~~~~t~~~~L~e~l-~~ADIVIsAtg~p~~vI~~e~vk~--GavVIDVgi~rD~d~~v--- 284 (320)
T 1edz_A 223 ------LN------KHHVEDLGEYSEDLLKKCS-LDSDVVITGVPSENYKFPTEYIKE--GAVCINFACTKNFSDDV--- 284 (320)
T ss_dssp ------CC------CCEEEEEEECCHHHHHHHH-HHCSEEEECCCCTTCCBCTTTSCT--TEEEEECSSSCCBCGGG---
T ss_pred ------hh------cccccccccccHhHHHHHh-ccCCEEEECCCCCcceeCHHHcCC--CeEEEEcCCCcccchhH---
Confidence 00 0001111 1011222 489999999874 44 88887643 45777777655 33443
Q ss_pred HHHCCCeEeccccccchhhHHHH
Q psy14499 176 LRDKGIILAPDVITNAGGVIVSY 198 (262)
Q Consensus 176 l~~rgi~~iPD~~aN~GGvi~s~ 198 (262)
.++--.+.|- .|.++.+.
T Consensus 285 -~~~a~~itPv----VGpmT~a~ 302 (320)
T 1edz_A 285 -KEKASLYVPM----TGKVTIAM 302 (320)
T ss_dssp -GTTEEEEESC----CHHHHHHH
T ss_pred -HhhCCeeCCC----ccHHHHHH
Confidence 2333345664 57666543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0099 Score=53.15 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~~~~~~~~il~~~~ 135 (262)
..++|.|+|.|.+|..+|..|. .|+.|+ +.| .+++.+.+..+.. .... .+.+..++.++ + .+|
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~-v~d----------~~~~~~~~~~~~l--~~~~~~~i~~~~~~~~-~-~~a 74 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVV-LQD----------VSEKALEAAREQI--PEELLSKIEFTTTLEK-V-KDC 74 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEE-EEC----------SCHHHHHHHHHHS--CGGGGGGEEEESSCTT-G-GGC
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEE-EEE----------CCHHHHHHHHHHH--HHHHhCCeEEeCCHHH-H-cCC
Confidence 4689999999999999999999 999987 777 6777777666540 0000 01222222333 3 588
Q ss_pred eEEeeCCccCc
Q psy14499 136 DILIPAAIEDQ 146 (262)
Q Consensus 136 DIlipaa~~~~ 146 (262)
|++|+|-+++.
T Consensus 75 DlVieavpe~~ 85 (293)
T 1zej_A 75 DIVMEAVFEDL 85 (293)
T ss_dssp SEEEECCCSCH
T ss_pred CEEEEcCcCCH
Confidence 99998877654
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0024 Score=60.75 Aligned_cols=125 Identities=12% Similarity=0.155 Sum_probs=68.9
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc--
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK-- 128 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~-- 128 (262)
.+.++++++|+|.|.|.+|+.+++.|.+. +.+|+ |+| -+.+++.++.+..+ +... .. .+.+.+
T Consensus 17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~-v~~----------R~~~ka~~la~~~~-~~~~-~~-D~~d~~~l 82 (467)
T 2axq_A 17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVT-VAC----------RTLANAQALAKPSG-SKAI-SL-DVTDDSAL 82 (467)
T ss_dssp ------CEEEEEECCSTTHHHHHHHHHTSTTEEEE-EEE----------SSHHHHHHHHGGGT-CEEE-EC-CTTCHHHH
T ss_pred cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEE-EEE----------CCHHHHHHHHHhcC-CcEE-EE-ecCCHHHH
Confidence 45678899999999999999999999988 67755 777 35666666554321 1100 00 011111
Q ss_pred -cccccCceEEeeCCccCcccccchhc-cC-ceEEEecCC-CCCCHHHHHHHHHCCCeEeccccccch
Q psy14499 129 -EFWSIPCDILIPAAIEDQITINNANN-VT-AKIILEGAN-GPTTTEADDILRDKGIILAPDVITNAG 192 (262)
Q Consensus 129 -~il~~~~DIlipaa~~~~it~e~a~~-~~-~kiIve~AN-~p~t~ea~~~l~~rgi~~iPD~~aN~G 192 (262)
+++ .++|++|-|++... +...+.. ++ .+.++...- .|.+.+..+..+++|+.+++..-.+.|
T Consensus 83 ~~~l-~~~DvVIn~tp~~~-~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~PG 148 (467)
T 2axq_A 83 DKVL-ADNDVVISLIPYTF-HPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDPG 148 (467)
T ss_dssp HHHH-HTSSEEEECSCGGG-HHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBTTB
T ss_pred HHHH-cCCCEEEECCchhh-hHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcCcc
Confidence 223 38999999987542 2221111 11 234444322 232333345567889998877755443
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.021 Score=52.38 Aligned_cols=44 Identities=32% Similarity=0.500 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
+..||+|.|||.||+.+.+.|.+....||+|-|. .|++.+.-+.
T Consensus 20 ~~~kVaInGfGrIGr~vlr~l~e~~~~ivaIndl---------~d~~~~a~ll 63 (356)
T 3hja_A 20 GSMKLAINGFGRIGRNVFKIAFERGIDIVAINDL---------TDPKTLAHLL 63 (356)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCEEEEEECS---------SCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHCCCCEEEEeCC---------CCHHHhhhhh
Confidence 4589999999999999999999889999999884 4666654444
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0086 Score=53.55 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=68.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc------
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW------ 131 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il------ 131 (262)
+||+|+|+ |.+|+..++.|.+.+.++++|+|. +.++ ....+ .|++...+++.++++
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~----------~~~~-~~~~~------~~~~~~~~~~~~~ll~~~~~l 66 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDP----------ATNV-GLVDS------FFPEAEFFTEPEAFEAYLEDL 66 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECS----------SCCC-GGGGG------TCTTCEEESCHHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcC----------CHHH-HHHHh------hCCCCceeCCHHHHHHHhhhh
Confidence 69999999 789999999999999999999994 2221 01111 233444444345555
Q ss_pred ---ccCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccc
Q psy14499 132 ---SIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDV 187 (262)
Q Consensus 132 ---~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~ 187 (262)
+.++|+++-|++. ..+.+.+... ...+++|=.=.....|++++ .+++|+.+...+
T Consensus 67 ~~~~~~vD~V~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~ 130 (312)
T 3o9z_A 67 RDRGEGVDYLSIASPN-HLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVL 130 (312)
T ss_dssp HHTTCCCSEEEECSCG-GGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECC
T ss_pred cccCCCCcEEEECCCc-hhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 3578998888864 3455444443 44577774322223455443 356777665433
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.011 Score=54.41 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=82.9
Q ss_pred CCCCeEEEEcCCH---HHHHHHHHHHHC-CCEEEE-EeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 56 IINSKISIQGFGN---VGSVAANLFFKA-GAKIVA-IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 56 l~~~~v~IqGfG~---VG~~~a~~L~~~-g~~vv~-V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
++..||+|+|+|. +|+.-+..+... ++++++ |+| .|+++..+..++.+- +....+++.+++
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d----------~~~~~a~~~a~~~g~----~~~~~~~~~~~l 75 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFD----------IDPIRGSAFGEQLGV----DSERCYADYLSM 75 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECC----------SSHHHHHHHHHHTTC----CGGGBCSSHHHH
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeC----------CCHHHHHHHHHHhCC----CcceeeCCHHHH
Confidence 5678999999999 999888877665 489998 888 688887777666531 111233435566
Q ss_pred ccc------CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccccccchhhHHHH
Q psy14499 131 WSI------PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDVITNAGGVIVSY 198 (262)
Q Consensus 131 l~~------~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~ 198 (262)
+.. ++|+++-|++.. .+.+.+... ...+++|=.=.....+++ +..+++|+.+...+.-.--..+...
T Consensus 76 l~~~~~~~~~vD~V~i~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~ 154 (398)
T 3dty_A 76 FEQEARRADGIQAVSIATPNG-THYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQA 154 (398)
T ss_dssp HHHHTTCTTCCSEEEEESCGG-GHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHH
T ss_pred HhcccccCCCCCEEEECCCcH-HHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHH
Confidence 642 599999888754 444444433 445777642222224444 3447788877655544444444444
Q ss_pred HHHHh
Q psy14499 199 FEWVQ 203 (262)
Q Consensus 199 ~E~~~ 203 (262)
.++++
T Consensus 155 k~~i~ 159 (398)
T 3dty_A 155 REMIA 159 (398)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 45544
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0067 Score=54.39 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHH--HHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIP--KLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~--~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
+.++|.|+|.|++|..++..|.+.| ..|+ +.|+ +.+ .+.++.+ .| ....+++.+.
T Consensus 21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r----------~~~~~~~~~l~~-~G-------~~~~~~~~e~ 81 (322)
T 2izz_A 21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSP----------DMDLATVSALRK-MG-------VKLTPHNKET 81 (322)
T ss_dssp -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECS----------CTTSHHHHHHHH-HT-------CEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECC----------CccHHHHHHHHH-cC-------CEEeCChHHH
Confidence 4568999999999999999999999 5665 6662 222 3333332 22 2222213333
Q ss_pred cccCceEEeeCCccCcccc---cchhccC-ceEEEecCCCCCCHHHHHHHHH
Q psy14499 131 WSIPCDILIPAAIEDQITI---NNANNVT-AKIILEGANGPTTTEADDILRD 178 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~---e~a~~~~-~kiIve~AN~p~t~ea~~~l~~ 178 (262)
. .+||++|.|.....+.. +..+.++ .++|+.-+|+-...+..+.|.+
T Consensus 82 ~-~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~ 132 (322)
T 2izz_A 82 V-QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSA 132 (322)
T ss_dssp H-HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHT
T ss_pred h-ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhh
Confidence 3 47999999987543321 1222232 5689998886544444556654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0091 Score=53.55 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=76.1
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc------
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW------ 131 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il------ 131 (262)
+||+|+|+ |.+|...++.|.+.+.++++|+|.+ .+. ....+ .|++...+++.++++
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~----------~~~-~~~~~------~~~~~~~~~~~~~ll~~~~~l 66 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDIN----------DSV-GIIDS------ISPQSEFFTEFEFFLDHASNL 66 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSS----------CCC-GGGGG------TCTTCEEESSHHHHHHHHHHH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCC----------HHH-HHHHh------hCCCCcEECCHHHHHHhhhhh
Confidence 69999999 7899999999999999999999942 221 01111 234444454345555
Q ss_pred ----ccCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEeccccccchhhHHHHHHH
Q psy14499 132 ----SIPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 132 ----~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~aN~GGvi~s~~E~ 201 (262)
+.++|+++-|++. ..+.+.+... ...+++|=.=.....|++++ .+++|+.+...+----...+....++
T Consensus 67 ~~~~~~~vD~V~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~ 145 (318)
T 3oa2_A 67 KRDSATALDYVSICSPN-YLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDK 145 (318)
T ss_dssp TTSTTTSCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHH
T ss_pred hhccCCCCcEEEECCCc-HHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHH
Confidence 4678999988864 4455544443 45577775322223444433 36678776544444333444444444
Q ss_pred Hh
Q psy14499 202 VQ 203 (262)
Q Consensus 202 ~~ 203 (262)
++
T Consensus 146 i~ 147 (318)
T 3oa2_A 146 VA 147 (318)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0086 Score=52.43 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=64.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC-----ceecCCCccccc-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE-----GEKINDSKEFWS- 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~-----~~~~~~~~~il~- 132 (262)
++|.|+|.|++|..++..|.+.|..|+ +.| .+.+.+.++.+..-.+...++ ....+ ..++..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~----------r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVT-LID----------QWPAHIEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQ 71 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEE-EEE----------CCHHHHHHHHhCCEEEEeCCCeeEecceeec-chhhccc
Confidence 589999999999999999999999877 666 355565555443211111110 01111 223332
Q ss_pred -cCceEEeeCCccCcccccchh----ccC-ceEEEecCCCCCC-HHHHHHHHHC
Q psy14499 133 -IPCDILIPAAIEDQITINNAN----NVT-AKIILEGANGPTT-TEADDILRDK 179 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~e~a~----~~~-~kiIve~AN~p~t-~ea~~~l~~r 179 (262)
.++|++|-|.....+ .+... .++ .++|+.-.|+.-+ ....+.+.+.
T Consensus 72 ~~~~d~vi~~v~~~~~-~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~ 124 (316)
T 2ew2_A 72 NEQVDLIIALTKAQQL-DAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKE 124 (316)
T ss_dssp SCCCSEEEECSCHHHH-HHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGG
T ss_pred CCCCCEEEEEeccccH-HHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCc
Confidence 289999999876533 33222 232 4688888887654 3333444333
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=62.76 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=62.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c---c
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S---I 133 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~---~ 133 (262)
.++|+|.|+|.||+.+|+.|.+.|..|+ |.| -|++.+.++.++.+-..=+.+++ ..++| + .
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~-vId----------~d~~~~~~~~~~~~~~~i~Gd~~----~~~~L~~Agi~ 67 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDIT-IVD----------KDGDRLRELQDKYDLRVVNGHAS----HPDVLHEAGAQ 67 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEE-EEE----------SCHHHHHHHHHHSSCEEEESCTT----CHHHHHHHTTT
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHhcCcEEEEEcCC----CHHHHHhcCCC
Confidence 5799999999999999999999999988 878 58888877766532100000111 12233 1 4
Q ss_pred CceEEeeCCccCcc---cccchhcc-CceEEEecCCCC
Q psy14499 134 PCDILIPAAIEDQI---TINNANNV-TAKIILEGANGP 167 (262)
Q Consensus 134 ~~DIlipaa~~~~i---t~e~a~~~-~~kiIve~AN~p 167 (262)
+||+||-++..+.. ....|+++ ..+-++.=.|.|
T Consensus 68 ~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar~~~~ 105 (461)
T 4g65_A 68 DADMLVAVTNTDETNMAACQVAFTLFNTPNRIARIRSP 105 (461)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEECCCH
T ss_pred cCCEEEEEcCChHHHHHHHHHHHHhcCCccceeEeccc
Confidence 79999998876433 34556665 444444444444
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.45 E-value=0.028 Score=51.25 Aligned_cols=97 Identities=19% Similarity=0.333 Sum_probs=60.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHH---HhcCCcc-CC----CC------ce-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYV---TFTRSIK-DF----NE------GE- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~---~~~g~~~-~~----~~------~~- 122 (262)
.||+|.|||.+|+.+++.|.+. +.++++|.|+. .|++.+..+. ..+|.+. +. .+ .+
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~--------~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~ 75 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPF--------ITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKP 75 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS--------SCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEE
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCC--------CCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeE
Confidence 5899999999999999999875 78999998820 2555433332 2333322 10 00 01
Q ss_pred --ecC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEecC
Q psy14499 123 --KIN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEGA 164 (262)
Q Consensus 123 --~~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~A 164 (262)
.+. +++++ | ..++|++++|++. ..+.+.+... .+ |+|++..
T Consensus 76 i~v~~~~dp~~l~w~~~~vDvV~eaTg~-~~~~e~a~~~l~aGak~VVIs~p 126 (337)
T 3e5r_O 76 VTVFGIRNPDEIPWAEAGAEYVVESTGV-FTDKEKAAAHLKGGAKKVVISAP 126 (337)
T ss_dssp EEEECCSCGGGCCHHHHTCSEEEECSSS-CCSHHHHTHHHHTTCSEEEESSC
T ss_pred EEEEecCChHHccccccCCCEEEECCCc-hhhHHHHHHHHHcCCCEEEEecC
Confidence 121 24444 3 3589999999864 4455555554 45 3888775
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.012 Score=55.04 Aligned_cols=75 Identities=21% Similarity=0.179 Sum_probs=48.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC------------C-ceecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN------------E-GEKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~------------~-~~~~~ 125 (262)
++|+|+|.|.||..+|..|.+.|..|+ +.| .|.+++..+.+..-.+. .| + ....+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~-~~d----------~~~~~~~~l~~~~~~i~-e~~l~~~~~~~~~~g~l~~t~ 68 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVI-GVD----------VSSTKIDLINQGKSPIV-EPGLEALLQQGRQTGRLSGTT 68 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHTTCCSSC-CTTHHHHHHHHHHTTCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHhCCCCCcC-CCCHHHHHHhhcccCceEEeC
Confidence 479999999999999999999999987 667 56666655543211110 01 1 11112
Q ss_pred CCccccccCceEEeeCCccCc
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQ 146 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~ 146 (262)
+.++.+ .+||+++-|.++..
T Consensus 69 ~~~~~~-~~aDvviiaVptp~ 88 (436)
T 1mv8_A 69 DFKKAV-LDSDVSFICVGTPS 88 (436)
T ss_dssp CHHHHH-HTCSEEEECCCCCB
T ss_pred CHHHHh-ccCCEEEEEcCCCc
Confidence 122233 48999999987654
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.049 Score=49.62 Aligned_cols=97 Identities=12% Similarity=0.274 Sum_probs=59.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---C-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---------CCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFK---A-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---------NEGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~---~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---------~~~~ 122 (262)
.||+|.|||.+|+.++++|.+ . ...+++|.|. .|++.+..+.+ .+|.+.+- .+.+
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~---------~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~ 73 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINEL---------ADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDD 73 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECS---------SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCC---------CCHHHHHHHhcccccCCCCCceEEEcCCeeEECCE
Confidence 589999999999999999987 4 7899999883 36665544443 22322210 0011
Q ss_pred e---c--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecCC
Q psy14499 123 K---I--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGAN 165 (262)
Q Consensus 123 ~---~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~AN 165 (262)
. . .+++++ | +.++|++++|++. ..+.+.+..+ .+| +|+.+.-
T Consensus 74 ~i~v~~~~dp~~l~~~~~~vDvV~e~tg~-~~s~e~a~~~l~~GakkVVId~~a 126 (339)
T 2x5j_O 74 AIRVLHERSLQSLPWRELGVDVVLDCTGV-YGSREHGEAHIAAGAKKVLFSHPG 126 (339)
T ss_dssp EEEEECCSSGGGCCHHHHTCSEEEECSSS-CCSHHHHHHHHHTTCSEEEESSCC
T ss_pred EEEEEecCChHHCcccccCCCEEEECCCc-cccHHHHHHHHHcCCCEEEEeccc
Confidence 1 1 113333 3 2489999999864 3455555554 455 6666543
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.034 Score=49.93 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=45.5
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-.+.|.+|+ .+++++.+.+++|++++|+|-++ ||+-++.+|.+.+++|+ +|.+
T Consensus 157 ~~~PcTp~gv----~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVT-i~Hs 211 (303)
T 4b4u_A 157 AYGSATPAGI----MTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVT-ICHS 211 (303)
T ss_dssp CCCCHHHHHH----HHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred cccCccHHHH----HHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEE-EecC
Confidence 3456888876 45677789999999999999765 89999999999999987 7764
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.022 Score=52.12 Aligned_cols=96 Identities=25% Similarity=0.389 Sum_probs=59.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---CC------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---FN------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~~------~~~~-- 123 (262)
.||+|.|||.+|+.+++.|.+. ...+|+|.|. .|++-+..+.+ .+|.+.+ +. +++.
T Consensus 3 ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~---------~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~ 73 (342)
T 2ep7_A 3 IKVGINGFGRIGRSFFRASWGREEIEIVAINDL---------TDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIK 73 (342)
T ss_dssp CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECS---------SCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecC---------CChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEE
Confidence 5899999999999999998876 7999999983 37765444443 2222111 00 0111
Q ss_pred -cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 -IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 -~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. +++++ | +.++|++++|+. ...+.+.+... .|| +|+.++
T Consensus 74 v~~~~dp~~~~w~~~gvDiV~estG-~~~s~e~a~~hl~aGakkVvisap 122 (342)
T 2ep7_A 74 VFAQKDPSQIPWGDLGVDVVIEATG-VFRDRENASKHLQGGAKKVIITAP 122 (342)
T ss_dssp EECCSSGGGCCHHHHTCSEEEECSS-SCCBHHHHTTTGGGTCSEEEESSC
T ss_pred EEEcCChhhCCccccCCCEEEECCC-chhhhhhhHHHHhcCCCEEEecCC
Confidence 11 12222 2 348999999985 44566666555 565 666654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.007 Score=54.58 Aligned_cols=123 Identities=12% Similarity=0.176 Sum_probs=73.4
Q ss_pred CeEEEEcCCHHHHH-HHH-HHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 59 SKISIQGFGNVGSV-AAN-LFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~-~a~-~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
.||+|+|+|.+|+. .+. .|.. .++++++|+|. |+++. +..+ .+++...+++.++++. .+
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~----------~~~~~-~~~~------~~~~~~~~~~~~~ll~~~~ 65 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRR----------HAKPE-EQAP------IYSHIHFTSDLDEVLNDPD 65 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECS----------SCCGG-GGSG------GGTTCEEESCTHHHHTCTT
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcC----------CHhHH-HHHH------hcCCCceECCHHHHhcCCC
Confidence 68999999999985 566 4343 58999999993 33322 1111 2334455555677775 47
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHH---HHHHHCCCeEeccccccchhhHHHHHHHH
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEAD---DILRDKGIILAPDVITNAGGVIVSYFEWV 202 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~---~~l~~rgi~~iPD~~aN~GGvi~s~~E~~ 202 (262)
+|+++-|++.. .+.+.+... ...+++| -|+ + .+++ +..+++|+.+...+.----..+....+++
T Consensus 66 ~D~V~i~tp~~-~h~~~~~~al~aGk~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i 138 (345)
T 3f4l_A 66 VKLVVVCTHAD-SHFEYAKRALEAGKNVLVE---KPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAI 138 (345)
T ss_dssp EEEEEECSCGG-GHHHHHHHHHHTTCEEEEC---SSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHH
T ss_pred CCEEEEcCChH-HHHHHHHHHHHcCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHH
Confidence 99999999654 444444433 4558888 444 3 4443 33467888776444333233333333444
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.009 Score=52.85 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|++|..+|..|.+.|+.|+ +.|
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~-~~d 45 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVV-LVD 45 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEE
Confidence 589999999999999999999999987 777
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0067 Score=55.47 Aligned_cols=93 Identities=27% Similarity=0.339 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceec-CCCccccc--
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKI-NDSKEFWS-- 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~-~~~~~il~-- 132 (262)
+++.+|+|+|.|.+|+.+++.+...|++|+ ++| .+.+++....+..+.. ...+ .+.+++.+
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~-v~d----------r~~~r~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 228 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFD----------INVERLSYLETLFGSR-----VELLYSNSAEIETAV 228 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHHGGG-----SEEEECCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEe----------CCHHHHHHHHHhhCce-----eEeeeCCHHHHHHHH
Confidence 667999999999999999999999999876 777 4666665554432110 0011 10111211
Q ss_pred cCceEEeeCCccCc------ccccchhccC-ceEEEecC
Q psy14499 133 IPCDILIPAAIEDQ------ITINNANNVT-AKIILEGA 164 (262)
Q Consensus 133 ~~~DIlipaa~~~~------it~e~a~~~~-~kiIve~A 164 (262)
.++|++|.|+.... ++.+....++ ..+|+.-+
T Consensus 229 ~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 229 AEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred cCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 37999999986422 3444555553 23555544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.025 Score=44.69 Aligned_cols=114 Identities=16% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCC-CCCCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 53 NLN-IINSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 53 g~~-l~~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
|.. ++.++|+|+|. |++|..+++.|.+.|++|.. .| |.+ + .+. +.+.+++.
T Consensus 8 ~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~-vn-------p~~---~----------~i~---G~~~~~s~ 63 (138)
T 1y81_A 8 GSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLP-VN-------PNY---D----------EIE---GLKCYRSV 63 (138)
T ss_dssp ------CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEE-EC-------TTC---S----------EET---TEECBSSG
T ss_pred cccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEE-eC-------CCC---C----------eEC---CeeecCCH
Confidence 443 47889999999 99999999999999998542 22 321 0 011 22333324
Q ss_pred ccccccCceEEeeCCccCcccccchh---ccCce-EEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHH
Q psy14499 128 KEFWSIPCDILIPAAIEDQITINNAN---NVTAK-IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVS 197 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~it~e~a~---~~~~k-iIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s 197 (262)
+++. .++|+.+-|.+.. ...+.+. ....+ +++... ..+.+..+..+++|+.++ --|+-|++..
T Consensus 64 ~el~-~~vDlvii~vp~~-~v~~v~~~~~~~g~~~i~~~~~--~~~~~l~~~a~~~Gi~~i---gpnc~g~~~~ 130 (138)
T 1y81_A 64 RELP-KDVDVIVFVVPPK-VGLQVAKEAVEAGFKKLWFQPG--AESEEIRRFLEKAGVEYS---FGRCIMVETS 130 (138)
T ss_dssp GGSC-TTCCEEEECSCHH-HHHHHHHHHHHTTCCEEEECTT--SCCHHHHHHHHHHTCEEE---CSCCHHHHC-
T ss_pred HHhC-CCCCEEEEEeCHH-HHHHHHHHHHHcCCCEEEEcCc--cHHHHHHHHHHHCCCEEE---cCCcceEEcc
Confidence 4444 3689888887642 2222222 23344 444332 247888888999999985 2466676643
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0017 Score=59.18 Aligned_cols=95 Identities=18% Similarity=0.280 Sum_probs=56.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-Ccc-CCCCc--------eecC-C
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIK-DFNEG--------EKIN-D 126 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~-~~~~~--------~~~~-~ 126 (262)
.||+|.|+|.+|+.+++.|.+ .++.+++|.|. ++....+...+.+ ++- .+++. -.+. +
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~----------~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~ 71 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT----------RPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGT 71 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEES----------SCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEE
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcC----------ChhHHHHhcCCcchhhccccccceeeecCCceEEcCC
Confidence 489999999999999999987 57999999983 3222222222211 100 01100 0011 1
Q ss_pred CccccccCceEEeeCCccCcccccchhcc---CceEEEecCC
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGAN 165 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN 165 (262)
.++++ .++|+++.|++.. .+.+.+... .+++|.+++-
T Consensus 72 ~~~~~-~~vDvV~~atp~~-~~~~~a~~~l~aG~~VId~sp~ 111 (337)
T 1cf2_P 72 VDDML-DEADIVIDCTPEG-IGAKNLKMYKEKGIKAIFQGGE 111 (337)
T ss_dssp HHHHH-HTCSEEEECCSTT-HHHHHHHHHHHHTCCEEECTTS
T ss_pred HHHHh-cCCCEEEECCCch-hhHHHHHHHHHcCCEEEEecCC
Confidence 22333 3899999998754 334444443 5778887765
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0042 Score=55.66 Aligned_cols=48 Identities=27% Similarity=0.415 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCC-----CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 43 IIGSKIASKINL-----NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 43 ~~~~~~~~~~g~-----~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+=+-+++.+|. .|+..+|+|+|.|.+|..+++.|.+.|..-+.+.|.
T Consensus 16 y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~ 68 (292)
T 3h8v_A 16 PRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDY 68 (292)
T ss_dssp ----------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred chHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECC
Confidence 444556666653 478999999999999999999999999766668884
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0083 Score=54.76 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc---c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS---I 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~---~ 133 (262)
.-++|.|+|+|++|..+++.|.+.|.+|+ +.| .+.+.+....+. | ....++..+++. .
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~-~~d----------r~~~~~~~a~~~-G-------~~~~~~~~e~~~~a~~ 67 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVF-GYN----------RSRSGAKSAVDE-G-------FDVSADLEATLQRAAA 67 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SCHHHHHHHHHT-T-------CCEESCHHHHHHHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHc-C-------CeeeCCHHHHHHhccc
Confidence 45689999999999999999999999887 667 466666554432 2 111222334442 2
Q ss_pred CceEEeeCCccCcccccchhcc----CceEEEecCCCCCCHHHHHHHHHC--CCeEec
Q psy14499 134 PCDILIPAAIEDQITINNANNV----TAKIILEGANGPTTTEADDILRDK--GIILAP 185 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~----~~kiIve~AN~p~t~ea~~~l~~r--gi~~iP 185 (262)
+||+++.|.+...+ .+....+ ...+|++.+.. .++..+.+.+. ++.++|
T Consensus 68 ~aDlVilavP~~~~-~~vl~~l~~~~~~~iv~Dv~Sv--k~~i~~~~~~~~~~~~~v~ 122 (341)
T 3ktd_A 68 EDALIVLAVPMTAI-DSLLDAVHTHAPNNGFTDVVSV--KTAVYDAVKARNMQHRYVG 122 (341)
T ss_dssp TTCEEEECSCHHHH-HHHHHHHHHHCTTCCEEECCSC--SHHHHHHHHHTTCGGGEEC
T ss_pred CCCEEEEeCCHHHH-HHHHHHHHccCCCCEEEEcCCC--ChHHHHHHHHhCCCCcEec
Confidence 68999999886432 2322222 23466665432 23322333332 456776
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0046 Score=55.77 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCCceeeCCCCCCHHH-HHHHHHhcCCccCCCCceecCCCccccc-
Q psy14499 57 INSKISIQGFGNVGSVAANLFFK--AGAKIVAIQDDKTTIYNPNGFNIPK-LQKYVTFTRSIKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~--~g~~vv~V~D~~G~i~~~~GlD~~~-l~~~~~~~g~~~~~~~~~~~~~~~~il~- 132 (262)
+..||+|+|+|++|+.+++.|.+ .+.++++++| .|+++ ..+..++.+.. ...++.+++++
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d----------~~~~~~~~~~a~~~g~~------~~~~~~e~ll~~ 66 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG----------IDAASDGLARAQRMGVT------TTYAGVEGLIKL 66 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEEC----------SCTTCHHHHHHHHTTCC------EESSHHHHHHHS
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEe----------CChhhhHHHHHHHcCCC------cccCCHHHHHhc
Confidence 35799999999999999999965 5789999999 45444 33444433310 01111344543
Q ss_pred ---cCceEEeeCCccCcccccchhc
Q psy14499 133 ---IPCDILIPAAIEDQITINNANN 154 (262)
Q Consensus 133 ---~~~DIlipaa~~~~it~e~a~~ 154 (262)
.++|+++.|++ ...+.+.+..
T Consensus 67 ~~~~~iDvV~~atp-~~~h~~~a~~ 90 (312)
T 1nvm_B 67 PEFADIDFVFDATS-ASAHVQNEAL 90 (312)
T ss_dssp GGGGGEEEEEECSC-HHHHHHHHHH
T ss_pred cCCCCCcEEEECCC-hHHHHHHHHH
Confidence 37899999998 4455555444
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.14 Score=48.17 Aligned_cols=182 Identities=16% Similarity=0.124 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC-------------cee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE-------------GEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~-------------~~~ 123 (262)
...|++|+|.|.||..+|..|.+.|.+|+ +.| .|.+++.++.+. ..-...|+ .+.
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~-~~D----------~~~~kv~~l~~g-~~~~~epgl~~~~~~~~~~g~l~~ 74 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDFGHEVV-CVD----------KDARKIELLHQN-VMPIYEPGLDALVASNVKAGRLSF 74 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCSTTHHHHTTT-CCSSCCTTHHHHHHHHHHTTCEEE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHhcC-CCCccCCCHHHHHHhhcccCCEEE
Confidence 35799999999999999999999999998 667 444444444331 11000111 111
Q ss_pred cCCCccccccCceEEeeCCccCcc--c------------ccchhcc-CceEEEecCCCCC--CHHHHHHHHHCC------
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQI--T------------INNANNV-TAKIILEGANGPT--TTEADDILRDKG------ 180 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~i--t------------~e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rg------ 180 (262)
-++..+.+ .+||++|-|-++..- + .+.++.+ +.++|+.-+-.|. +.+..+.+++++
T Consensus 75 ttd~~ea~-~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~ 153 (446)
T 4a7p_A 75 TTDLAEGV-KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAK 153 (446)
T ss_dssp ESCHHHHH-TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCE
T ss_pred ECCHHHHH-hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCce
Confidence 12122333 489999998332211 1 1122223 3445555554443 345556666653
Q ss_pred CeEeccccccc--------------hhhHHHHHHHHhhhcCCCC----------CHH--HHH----HHHHHHHHHHHHHH
Q psy14499 181 IILAPDVITNA--------------GGVIVSYFEWVQNLSNLLW----------TEQ--EIN----LRLNNIICNAFDAI 230 (262)
Q Consensus 181 i~~iPD~~aN~--------------GGvi~s~~E~~~~~~~~~~----------~~~--~v~----~~l~~~~~~~~~~v 230 (262)
+..-|.++... |+---..++.++.+-.-.. +.. ++. ..+.......++++
T Consensus 154 v~~~Pe~a~eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~ 233 (446)
T 4a7p_A 154 VVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEI 233 (446)
T ss_dssp EEECCCCCCTTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcccccccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456654322 2111233444443221111 111 111 11222334557788
Q ss_pred HHHHhhcCCCHHHHHHHHHHH
Q psy14499 231 WELANTKKVSLRTAAFIIGCT 251 (262)
Q Consensus 231 ~~~a~~~~~~~r~aa~~~a~~ 251 (262)
...+++.|+++.+....++.+
T Consensus 234 ~~l~~~~GiD~~~v~~~~~~~ 254 (446)
T 4a7p_A 234 ADLCEQVGADVQEVSRGIGMD 254 (446)
T ss_dssp HHHHHHTTCCHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHhcC
Confidence 889999999998887766543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.016 Score=51.54 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+..||+|+|+ |++|+..++.|.+.|.++++..|.+.. | ++ +. +...+++.+++.+ .+
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~-----g----------~~---~~---G~~vy~sl~el~~~~~ 64 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG-----G----------TT---HL---GLPVFNTVREAVAATG 64 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-----T----------CE---ET---TEEEESSHHHHHHHHC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcc-----c----------ce---eC---CeeccCCHHHHhhcCC
Confidence 5689999999 999999999999989998766664210 0 00 11 2223332344542 37
Q ss_pred ceEEeeCCccCcccccchh---ccCceEEEecCCCCC-CH--HHHHHHHHCCCeEe-ccc
Q psy14499 135 CDILIPAAIEDQITINNAN---NVTAKIILEGANGPT-TT--EADDILRDKGIILA-PDV 187 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~---~~~~kiIve~AN~p~-t~--ea~~~l~~rgi~~i-PD~ 187 (262)
+|+.+-|++.... .+.+. +...+.++..+-+.. .. +..+..+++|+.++ |..
T Consensus 65 ~D~viI~tP~~~~-~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~liGPNc 123 (288)
T 2nu8_A 65 ATASVIYVPAPFC-KDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNT 123 (288)
T ss_dssp CCEEEECCCGGGH-HHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEECSSC
T ss_pred CCEEEEecCHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEecCC
Confidence 8999998876432 33332 235676565443322 22 34556677888666 443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.02 Score=48.02 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++..++|.|+|.|++|+.+++.|.+.|.+|+ +.|
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~-~~~ 49 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVT-YYG 49 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEc
Confidence 446788999999999999999999999999987 555
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.046 Score=49.64 Aligned_cols=93 Identities=23% Similarity=0.327 Sum_probs=55.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCCC---------Cce---
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDFN---------EGE--- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~~---------~~~--- 122 (262)
.||+|.|||.+|+.++|+|.++ ...|++|.|. .|...+.-+.+ -++.+.+.. +++
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~---------~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~ 72 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS---------SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC---------CChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEE
Confidence 4899999999999999999875 6899999883 35554332222 223322110 000
Q ss_pred ecC--CCccc-c-ccCceEEeeCCccCcccccchhcc---CceEEE
Q psy14499 123 KIN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAKIIL 161 (262)
Q Consensus 123 ~~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~kiIv 161 (262)
... +++++ | ..++|++++|++ ...+.+.++.+ .+|.|.
T Consensus 73 v~~~~dp~~i~w~~~~vDvVf~atg-~~~s~e~a~~~l~~GakvVd 117 (330)
T 1gad_O 73 VTAERDPANLKWDEVGVDVVAEATG-LFLTDETARKHITAGAKKVV 117 (330)
T ss_dssp EECCSSGGGGCHHHHTCSEEEECSS-SCCSHHHHTHHHHTTCSEEE
T ss_pred EEEcCChhhCccccccCCEEEECCC-ccccHHHHHHHHHCCCEEEE
Confidence 111 12333 2 257999999985 44556666555 566444
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0049 Score=52.99 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG----AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g----~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++|.|+|+|++|+.+++.|.+.| ..|+ +.|++- + + . +....++..+..
T Consensus 3 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~-----~-----~-------~-------g~~~~~~~~~~~- 56 (262)
T 2rcy_A 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLF-YYGPSK-----K-----N-------T-------TLNYMSSNEELA- 56 (262)
T ss_dssp SSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEE-EECSSC-----C-----S-------S-------SSEECSCHHHHH-
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEE-EEeCCc-----c-----c-------C-------ceEEeCCHHHHH-
Confidence 3568999999999999999999988 5665 666421 1 0 0 122222123333
Q ss_pred cCceEEeeCCccCcccccchhc----cCceEEEecCCCCCCHHHHHHHHH--CCCeEecccc
Q psy14499 133 IPCDILIPAAIEDQITINNANN----VTAKIILEGANGPTTTEADDILRD--KGIILAPDVI 188 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~----~~~kiIve~AN~p~t~ea~~~l~~--rgi~~iPD~~ 188 (262)
.++|++|.|.....+ .+.... ++.++|+--.|+--.....+.+.+ +.+.++|..-
T Consensus 57 ~~~D~vi~~v~~~~~-~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p 117 (262)
T 2rcy_A 57 RHCDIIVCAVKPDIA-GSVLNNIKPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTP 117 (262)
T ss_dssp HHCSEEEECSCTTTH-HHHHHHSGGGCTTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGG
T ss_pred hcCCEEEEEeCHHHH-HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChH
Confidence 379999999886533 333322 344566666665333334444433 2355667653
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=49.62 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=54.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+.|+.|+ +.|.. -+.+.+.++.+. | .+ ++..+++ .++|++
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~-~~~~~--------~~~~~~~~~~~~-g-------~~--~~~~~~~-~~aDvv 60 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVV-TSLEG--------RSPSTIERARTV-G-------VT--ETSEEDV-YSCPVV 60 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEE-ECCTT--------CCHHHHHHHHHH-T-------CE--ECCHHHH-HTSSEE
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEE-EeCCc--------cCHHHHHHHHHC-C-------Cc--CCHHHHH-hcCCEE
Confidence 479999999999999999999999877 44520 134444444332 2 11 2244444 489999
Q ss_pred eeCCccCccccc---chhccCceEEEecCCC
Q psy14499 139 IPAAIEDQITIN---NANNVTAKIILEGANG 166 (262)
Q Consensus 139 ipaa~~~~it~e---~a~~~~~kiIve~AN~ 166 (262)
+.|.+....... ..+.++. +|++-++.
T Consensus 61 i~~v~~~~~~~~~~~~~~~~~~-~vi~~s~~ 90 (264)
T 1i36_A 61 ISAVTPGVALGAARRAGRHVRG-IYVDINNI 90 (264)
T ss_dssp EECSCGGGHHHHHHHHHTTCCS-EEEECSCC
T ss_pred EEECCCHHHHHHHHHHHHhcCc-EEEEccCC
Confidence 999876543222 1222334 78877544
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=53.65 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=69.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-C-CEEEEE-eCCCceeeCCCCCCHHHHHHHHHhcCC----ccC----------CC-
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-G-AKIVAI-QDDKTTIYNPNGFNIPKLQKYVTFTRS----IKD----------FN- 119 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g-~~vv~V-~D~~G~i~~~~GlD~~~l~~~~~~~g~----~~~----------~~- 119 (262)
++|+|.|+ |.||+.+++.+.+. + ++++++ ++ .+++.+.+..++.+- +.+ ++
T Consensus 5 ~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag----------~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~ 74 (388)
T 1r0k_A 5 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN----------RNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAG 74 (388)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES----------SCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTT
T ss_pred eEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcC----------CCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhcc
Confidence 78999999 99999999999886 3 889988 56 566666665544321 000 00
Q ss_pred -CceecC---CCccccccCceEEeeCCccCcccccchh-cc-CceEEEecCCCCC----CHHHHHHHHHCCCeEecc
Q psy14499 120 -EGEKIN---DSKEFWSIPCDILIPAAIEDQITINNAN-NV-TAKIILEGANGPT----TTEADDILRDKGIILAPD 186 (262)
Q Consensus 120 -~~~~~~---~~~~il~~~~DIlipaa~~~~it~e~a~-~~-~~kiIve~AN~p~----t~ea~~~l~~rgi~~iPD 186 (262)
+.+.+. +..++.+.++|+++.|..+. .--+++. .+ ..|.|+=+ |-.+ -++..+..+++|+.++|-
T Consensus 75 ~~~~v~~g~~~~~el~~~~iDvVV~ai~G~-aGl~ptlaAi~aGK~VvlA-NKE~lv~~G~~l~~~A~~~gv~liPV 149 (388)
T 1r0k_A 75 SSVEAAAGADALVEAAMMGADWTMAAIIGC-AGLKATLAAIRKGKTVALA-NKESLVSAGGLMIDAVREHGTTLLPV 149 (388)
T ss_dssp CSSEEEESHHHHHHHHTSCCSEEEECCCSG-GGHHHHHHHHHTTSEEEEC-CSHHHHTTHHHHHHHHHHHTCEEEEC
T ss_pred CCcEEEeCccHHHHHHcCCCCEEEEeCCCH-HHHHHHHHHHHCCCEEEEe-CcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 011111 01134444589999997552 2222222 23 34566554 4443 255556667889999886
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.077 Score=48.50 Aligned_cols=102 Identities=21% Similarity=0.347 Sum_probs=59.3
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---CC------
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---NE------ 120 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~~------ 120 (262)
..+...||+|-|||.+|+.+++.+.+. ...||+|.|.. .|++.+.-+.+ .+|.+.+- .+
T Consensus 7 ~~~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~~--------~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~ 78 (345)
T 2b4r_O 7 HHMAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPF--------MDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIG 78 (345)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTT--------CCHHHHHHHHHCCTTTCSCSSCEEEETTEEEES
T ss_pred cchhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCCC--------CChHHHHHHhccCCCCCcCCCCEEEcCCEEEEC
Confidence 346778999999999999999998764 58999998831 36654433333 22322110 00
Q ss_pred cee---cC--CCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 121 GEK---IN--DSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 121 ~~~---~~--~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
++. .. +++++ | +.++|++++|+. ...+.+.+... .|| +|+.+.
T Consensus 79 Gk~i~v~~~~dp~~~~w~~~gvDiV~estG-~f~s~e~a~~hl~aGakkVVIsap 132 (345)
T 2b4r_O 79 EKKVSVFAEKDPSQIPWGKCQVDVVCESTG-VFLTKELASSHLKGGAKKVIMSAP 132 (345)
T ss_dssp SCEEEEECCSSGGGCCHHHHTCSEEEECSS-SCCSHHHHTHHHHTTCSEEEESSC
T ss_pred CEEEEEEEcCCcccCcccccCCCEEEECcC-ccccHhhHHHHHHCCCCEEEECCC
Confidence 111 11 12222 2 248999999984 55566666554 565 666543
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=1 Score=42.21 Aligned_cols=43 Identities=26% Similarity=0.446 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|.++.|+|.|.||..+|..|.+.|+.|+ +.| +|.+++.++.+
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~-~~D----------~~~~kv~~L~~ 52 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVL-GVD----------INQQTIDKLQN 52 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHT
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHC
Confidence 57789999999999999999999999998 668 78888777665
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0078 Score=52.66 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=40.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+++.|.+. ..|+.+.| .+.+++.+..++.+. ..++.++++ .++|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~----------~~~~~~~~~~~~~g~--------~~~~~~~~~-~~~DvV 62 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILS----------RSIDRARNLAEVYGG--------KAATLEKHP-ELNGVV 62 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEEC----------SSHHHHHHHHHHTCC--------CCCSSCCCC-C---CE
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEe----------CCHHHHHHHHHHcCC--------ccCCHHHHH-hcCCEE
Confidence 4799999999999999999877 77655667 466666666554332 112133444 367888
Q ss_pred eeCCccCc
Q psy14499 139 IPAAIEDQ 146 (262)
Q Consensus 139 ipaa~~~~ 146 (262)
|.|.+.+.
T Consensus 63 ilav~~~~ 70 (276)
T 2i76_A 63 FVIVPDRY 70 (276)
T ss_dssp EECSCTTT
T ss_pred EEeCChHH
Confidence 88776654
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0069 Score=54.90 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++|+|+|+|++|+.+++.|.+.|.+|+ +.|
T Consensus 14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~-~~~ 46 (338)
T 1np3_A 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGL 46 (338)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EEC
T ss_pred hcCCEEEEECchHHHHHHHHHHHHCcCEEE-EEE
Confidence 467899999999999999999999999876 666
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.06 Score=42.68 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=66.9
Q ss_pred CCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 58 NSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 58 ~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++|+|+|. |++|..+++.|.+.|++|..| ||.+ ..+. +...+++.+++- .
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V--------np~~-------------~~i~---G~~~y~sl~~l~-~ 76 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPKY-------------EEVL---GRKCYPSVLDIP-D 76 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC-------------SEET---TEECBSSGGGCS-S
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE--------CCCC-------------CeEC---CeeccCCHHHcC-C
Confidence 579999999 799999999999999985544 2221 0111 222233233443 3
Q ss_pred CceEEeeCCccCcccccchh---ccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 134 PCDILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~---~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
++|+.+-|.+... ..+.++ ....+.|+--. +....+..+..+++|+.++ --|+-|+..
T Consensus 77 ~vDlvvi~vp~~~-~~~vv~~~~~~gi~~i~~~~-g~~~~~l~~~a~~~Gi~vv---Gpnc~gv~~ 137 (144)
T 2d59_A 77 KIEVVDLFVKPKL-TMEYVEQAIKKGAKVVWFQY-NTYNREASKKADEAGLIIV---ANRCMMREH 137 (144)
T ss_dssp CCSEEEECSCHHH-HHHHHHHHHHHTCSEEEECT-TCCCHHHHHHHHHTTCEEE---ESCCHHHHH
T ss_pred CCCEEEEEeCHHH-HHHHHHHHHHcCCCEEEECC-CchHHHHHHHHHHcCCEEE---cCCchhhcc
Confidence 6888888766522 222222 23455444332 2347888899999999985 345566654
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.02 Score=50.74 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC--CHHHHHHHHHhcCCcc-C--CCCceecC--CCcccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGF--NIPKLQKYVTFTRSIK-D--FNEGEKIN--DSKEFW 131 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~Gl--D~~~l~~~~~~~g~~~-~--~~~~~~~~--~~~~il 131 (262)
++|+|+|.|++|+.++..|.+.|..|+ +.| . +.+.+..+.+....+. + ++.....+ +..+..
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 69 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVR-IWG----------TEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCL 69 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEE-EEC----------CGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEE----------ccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHH
Confidence 479999999999999999999999877 666 3 4555555444321111 0 00011111 122223
Q ss_pred ccCceEEeeCCccCcccc---cchhccC-ceEEEecCCCC------CCHHHHHHHHH
Q psy14499 132 SIPCDILIPAAIEDQITI---NNANNVT-AKIILEGANGP------TTTEADDILRD 178 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~---e~a~~~~-~kiIve~AN~p------~t~ea~~~l~~ 178 (262)
.++|+++-|.....+.. +..+ ++ .++|+.-.|+- ......+.+.+
T Consensus 70 -~~~D~vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335)
T 1txg_A 70 -ENAEVVLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335)
T ss_dssp -TTCSEEEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred -hcCCEEEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence 48999999987764321 2223 43 45888888875 23344555554
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.027 Score=50.91 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=28.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.-.+|+|+|.|.+|++.|..+...|+.|+ +.|
T Consensus 4 p~~~~VaViGaG~MG~giA~~~a~~G~~V~-l~D 36 (319)
T 3ado_A 4 PAAGDVLIVGSGLVGRSWAMLFASGGFRVK-LYD 36 (319)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCCEE-EEC
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCeEE-EEE
Confidence 345689999999999999999999999988 878
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=52.51 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC-------CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC------cee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG-------AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEK 123 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g-------~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~------~~~ 123 (262)
..++|+|+|.|++|..++..|.+.| ..|+ +.|.+... .+- ..+..+.+........++ ...
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~~~---~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEEDI---GGK--KLTEIINTQHENVKYLPGHKLPPNVVA 80 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCCBS---SSS--BHHHHHHHHSCCTTTSTTCCCCTTEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEE-EEEcChhh---hhh--HHHHHHHhcCcccccCCcccCccCeEE
Confidence 3468999999999999999999988 7766 66642210 000 022233322211111111 111
Q ss_pred cCCCccccccCceEEeeCCccCcccccchhc----c-CceEEEecCCCC
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQITINNANN----V-TAKIILEGANGP 167 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it~e~a~~----~-~~kiIve~AN~p 167 (262)
.++..+.. .+||++|.|.....+ .+.... + ..++|+...|+-
T Consensus 81 ~~~~~~~~-~~aD~Vilav~~~~~-~~v~~~i~~~l~~~~ivv~~~~Gi 127 (354)
T 1x0v_A 81 VPDVVQAA-EDADILIFVVPHQFI-GKICDQLKGHLKANATGISLIKGV 127 (354)
T ss_dssp ESSHHHHH-TTCSEEEECCCGGGH-HHHHHHHTTCSCTTCEEEECCCCB
T ss_pred EcCHHHHH-cCCCEEEEeCCHHHH-HHHHHHHHhhCCCCCEEEEECCcc
Confidence 12122333 489999999876433 233322 2 245888888864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.05 Score=49.34 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=66.2
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC--
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-- 125 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-- 125 (262)
+++..+....|.+|+|+|.|.||..+++++...|++|+++.. +.+++....++.|. ...++
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~-----------~~~~~~~~~~~lGa------~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVIST-----------SPSKKEEALKNFGA------DSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-----------CGGGHHHHHHTSCC------SEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC-----------CHHHHHHHHHhcCC------ceEEecc
Confidence 344455544789999999999999999999999999885543 23333333323331 01111
Q ss_pred CCcccc--ccCceEEeeCCccCcccccchhcc--CceEEEecCC-CCCCHHHHHHHHHCCCeEec
Q psy14499 126 DSKEFW--SIPCDILIPAAIEDQITINNANNV--TAKIILEGAN-GPTTTEADDILRDKGIILAP 185 (262)
Q Consensus 126 ~~~~il--~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN-~p~t~ea~~~l~~rgi~~iP 185 (262)
+.+.+. ...+|++++|+..........+.+ ..++|.=|.. .+.+-.. ..+..+++.+..
T Consensus 241 ~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~i~g 304 (366)
T 1yqd_A 241 DQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPA-FSLIAGRKIVAG 304 (366)
T ss_dssp CHHHHHHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECH-HHHHTTTCEEEE
T ss_pred CHHHHHHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCH-HHHHhCCcEEEE
Confidence 011121 137899999987543233333333 3555544432 2222111 224556666653
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.029 Score=53.33 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
..++|+|+|.|.||..+|..|.+.|.+|+ +.| .|.+++..+.+
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~-~~d----------~~~~~v~~l~~ 49 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADIGHDVF-CLD----------VDQAKIDILNN 49 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHT
T ss_pred CCceEEEECcCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHC
Confidence 45799999999999999999999999988 567 56666666554
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.015 Score=52.68 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCCC-eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC------ceecCCC
Q psy14499 55 NIINS-KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEKINDS 127 (262)
Q Consensus 55 ~l~~~-~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~------~~~~~~~ 127 (262)
++..+ +|+|+|.|++|..++..|.+.|..|+ +.| .+.+.+..+.+........++ ....++.
T Consensus 11 ~~m~M~kI~iIG~G~mG~~la~~L~~~G~~V~-~~~----------r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (366)
T 1evy_A 11 ELLYLNKAVVFGSGAFGTALAMVLSKKCREVC-VWH----------MNEEEVRLVNEKRENVLFLKGVQLASNITFTSDV 79 (366)
T ss_dssp CCCCEEEEEEECCSHHHHHHHHHHTTTEEEEE-EEC----------SCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCH
T ss_pred HhhccCeEEEECCCHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHHcCcccccccccccccceeeeCCH
Confidence 34445 89999999999999999999998876 666 355665555544322211111 1212212
Q ss_pred ccccccCceEEeeCCccCcccccchhc--------cC--ceEEEecCCC
Q psy14499 128 KEFWSIPCDILIPAAIEDQITINNANN--------VT--AKIILEGANG 166 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~it~e~a~~--------~~--~kiIve~AN~ 166 (262)
.+.. .++|++|.|.....+ .+.+.. ++ .++|+...|+
T Consensus 80 ~~~~-~~aDvVilav~~~~~-~~v~~~~~~gl~~~l~~~~~ivv~~~~g 126 (366)
T 1evy_A 80 EKAY-NGAEIILFVIPTQFL-RGFFEKSGGNLIAYAKEKQVPVLVCTKG 126 (366)
T ss_dssp HHHH-TTCSSEEECCCHHHH-HHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred HHHH-cCCCEEEECCChHHH-HHHHHHhHHHHHHhcCccCCEEEEECCc
Confidence 2333 379999998875332 222222 22 4577887776
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0091 Score=49.61 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=57.1
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|+|+| .|++|+.+++.|.+.|.+|+ +.| -+.+++.+..+..+....-.+.. .++..+.+ .++|+
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~D~ 67 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGS----------RREEKAEAKAAEYRRIAGDASIT-GMKNEDAA-EACDI 67 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEE----------SSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHH-HHCSE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHHhccccccCCCC-hhhHHHHH-hcCCE
Confidence 4799999 99999999999999999877 556 34555444433211000000111 11122333 47999
Q ss_pred EeeCCccCcccccchhc----cCceEEEecCCC
Q psy14499 138 LIPAAIEDQITINNANN----VTAKIILEGANG 166 (262)
Q Consensus 138 lipaa~~~~it~e~a~~----~~~kiIve~AN~ 166 (262)
++.|...+.+. +...+ ++.++|+..+|+
T Consensus 68 Vi~~~~~~~~~-~~~~~l~~~~~~~~vi~~~~g 99 (212)
T 1jay_A 68 AVLTIPWEHAI-DTARDLKNILREKIVVSPLVP 99 (212)
T ss_dssp EEECSCHHHHH-HHHHHTHHHHTTSEEEECCCC
T ss_pred EEEeCChhhHH-HHHHHHHHHcCCCEEEEcCCC
Confidence 99998865432 33322 245688998884
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.049 Score=49.58 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred CCCCCeEEEEc-CCHHHHH-HH----HHHHHCC-CEEE---------EEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC
Q psy14499 55 NIINSKISIQG-FGNVGSV-AA----NLFFKAG-AKIV---------AIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF 118 (262)
Q Consensus 55 ~l~~~~v~IqG-fG~VG~~-~a----~~L~~~g-~~vv---------~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~ 118 (262)
+++..||+|+| +|.+|+. .+ +.+.+.+ ..++ +|+| .|+++..+..++.+.-
T Consensus 3 ~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~----------~~~~~a~~~a~~~~~~--- 69 (383)
T 3oqb_A 3 TTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVG----------RSAEKVEALAKRFNIA--- 69 (383)
T ss_dssp CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEEC----------SSSHHHHHHHHHTTCC---
T ss_pred CCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEc----------CCHHHHHHHHHHhCCC---
Confidence 34667999999 9999997 55 6665543 2221 5888 5788877776665421
Q ss_pred CCceecCCCccccc-cCceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHH---HHHHCCCeEecccc
Q psy14499 119 NEGEKINDSKEFWS-IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADD---ILRDKGIILAPDVI 188 (262)
Q Consensus 119 ~~~~~~~~~~~il~-~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~---~l~~rgi~~iPD~~ 188 (262)
..+++.++++. .++|+++-|++. ..+.+.+... ...+++| -|+ + .++++ ..+++|+.+...+.
T Consensus 70 ---~~~~~~~~ll~~~~iD~V~i~tp~-~~h~~~~~~al~~Gk~V~~E---KP~a~~~~~~~~l~~~a~~~~~~~~v~~~ 142 (383)
T 3oqb_A 70 ---RWTTDLDAALADKNDTMFFDAATT-QARPGLLTQAINAGKHVYCE---KPIATNFEEALEVVKLANSKGVKHGTVQD 142 (383)
T ss_dssp ---CEESCHHHHHHCSSCCEEEECSCS-SSSHHHHHHHHTTTCEEEEC---SCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred ---cccCCHHHHhcCCCCCEEEECCCc-hHHHHHHHHHHHCCCeEEEc---CCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 22343567774 579999988875 4455554443 3345655 344 3 34443 33678887654443
Q ss_pred ccchhhHHHHHHHHh
Q psy14499 189 TNAGGVIVSYFEWVQ 203 (262)
Q Consensus 189 aN~GGvi~s~~E~~~ 203 (262)
.---..+....++++
T Consensus 143 ~r~~p~~~~~~~~i~ 157 (383)
T 3oqb_A 143 KLFLPGLKKIAFLRD 157 (383)
T ss_dssp GGGSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 333333444444443
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.023 Score=54.24 Aligned_cols=42 Identities=17% Similarity=0.360 Sum_probs=35.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
-++|+|+|.|.+|..+|..|.+.|+.|+ +.| .|.+++.+..+
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~-l~D----------~~~e~l~~~~~ 46 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVL-LYD----------ISAEALTRAID 46 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SCHHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHH
Confidence 4589999999999999999999999987 777 67776665543
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.046 Score=47.96 Aligned_cols=49 Identities=24% Similarity=0.254 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++.|....++..+ +.++++++++|.| .|.+|+++++.|.+.|++|+ +++
T Consensus 101 d~~g~~~~l~~~~---~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~-i~~ 150 (287)
T 1lu9_A 101 TAAAGVALVVKAA---GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCG 150 (287)
T ss_dssp HHHHHHHHHHHHT---TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred hHHHHHHHHHHhh---ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEE
Confidence 5667766665321 6778999999999 89999999999999999965 776
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.33 Score=44.05 Aligned_cols=97 Identities=21% Similarity=0.359 Sum_probs=60.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Cceec-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEKI- 124 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~~- 124 (262)
.||.|-|||.+|+.+.|.+.+. ...||+|-|. -.|++.+.-+.+ .+|.+.+- . +++.+
T Consensus 2 ~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~--------~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~ 73 (332)
T 3pym_A 2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDP--------FITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIA 73 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHSTTCEEEEEECT--------TCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEE
T ss_pred eEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCC--------CCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEE
Confidence 5899999999999999988775 6899999883 137776654444 23333210 0 11111
Q ss_pred ----CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 125 ----NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 125 ----~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 74 v~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkViIsap 122 (332)
T 3pym_A 74 TYQERDPANLPWGSSNVDIAIDSTG-VFKELDTAQKHIDAGAKKVVITAP 122 (332)
T ss_dssp EECCSSGGGSCTTTTTCSEEEECSS-SSCSHHHHHHHHHTTCSEEEESSC
T ss_pred EEeecccccCCccccCccEEEEecc-cccCHHHHHHHHHcCCCEEEECCC
Confidence 113332 3 468999999985 44566666554 454 666553
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.038 Score=52.51 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=32.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
++|+|+|.|.||..+|..|.+. |..|+ +.| .|.+++..+.
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~-~~D----------~~~~~v~~l~ 51 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVT-VVD----------MNTAKIAEWN 51 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEE-EEC----------SCHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEE----------CCHHHHHHHH
Confidence 6899999999999999999987 78888 567 5666665554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.11 Score=46.61 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
.|.+|+|.|.|.||..+++++...|++|+++.. +.+++...+ +.|. ...+. ..+.+...+|
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~-----------~~~~~~~~~-~lGa------~~v~~-~~~~~~~~~D 236 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFAR-----------NEHKKQDAL-SMGV------KHFYT-DPKQCKEELD 236 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECS-----------SSTTHHHHH-HTTC------SEEES-SGGGCCSCEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeC-----------CHHHHHHHH-hcCC------CeecC-CHHHHhcCCC
Confidence 688999999999999999999999999885532 222322222 2221 11122 2222333899
Q ss_pred EEeeCCccCcccccchhcc--CceEEEecCCC--CCC-HHHHHHHHHCCCeEec
Q psy14499 137 ILIPAAIEDQITINNANNV--TAKIILEGANG--PTT-TEADDILRDKGIILAP 185 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~--~~kiIve~AN~--p~t-~ea~~~l~~rgi~~iP 185 (262)
++++|......-....+.+ ..++|.=|... +.+ ......+..+++.+..
T Consensus 237 ~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g 290 (348)
T 3two_A 237 FIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG 290 (348)
T ss_dssp EEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEE
Confidence 9999987552223333333 45555544322 333 2223343366776653
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.038 Score=52.23 Aligned_cols=118 Identities=17% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 45 GSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 45 ~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
++..++.+|. +-.-++|.|.|.|++|..+|+.|. .+..+. +.+ -|.++...+.++. |+..+
T Consensus 221 i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~-~~~~v~-iIE----------~d~~r~~~la~~l------~~~~V 282 (461)
T 4g65_A 221 IRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLE-QTYSVK-LIE----------RNLQRAEKLSEEL------ENTIV 282 (461)
T ss_dssp HHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHT-TTSEEE-EEE----------SCHHHHHHHHHHC------TTSEE
T ss_pred HHHHHHhhccccccccEEEEEcchHHHHHHHHHhh-hcCceE-EEe----------cCHHHHHHHHHHC------CCceE
Confidence 4566666665 345679999999999999999985 457766 666 5777777766542 22222
Q ss_pred cC-C--Cccccc----cCceEEeeCCcc---CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 124 IN-D--SKEFWS----IPCDILIPAAIE---DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 124 ~~-~--~~~il~----~~~DIlipaa~~---~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
+- | ..++|. .++|+|+-++.. |++..-.|+++.++-++.-.|.| +-.+.+++-||-.
T Consensus 283 i~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~---~~~~l~~~~gid~ 349 (461)
T 4g65_A 283 FCGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRG---AYVDLVQGGVIDV 349 (461)
T ss_dssp EESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCH---HHHHHHCSSSSCE
T ss_pred EeccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccccccc---chhhhhhccccce
Confidence 21 0 122332 489999999975 55667778889888777777765 3345555666544
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.011 Score=50.11 Aligned_cols=103 Identities=14% Similarity=0.060 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCceecCCCcccc----
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGEKINDSKEFW---- 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~~~~~~~~il---- 131 (262)
...+|+|.|+|.+|+.+++.|.+.|. |+ +.| -|++.+.+.. .+ +.-+ -+. + ..+.+
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~-vid----------~~~~~~~~~~--~~-~~~i~gd~---~-~~~~l~~a~ 68 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRGSEV-FV-LAE----------DENVRKKVLR--SG-ANFVHGDP---T-RVSDLEKAN 68 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTTSEE-EE-EES----------CGGGHHHHHH--TT-CEEEESCT---T-CHHHHHHTT
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCe-EE-EEE----------CCHHHHHHHh--cC-CeEEEcCC---C-CHHHHHhcC
Confidence 34689999999999999999999998 76 667 3555554443 12 1100 011 1 11222
Q ss_pred ccCceEEeeCCccCccc---ccchhccC--ceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 132 SIPCDILIPAAIEDQIT---INNANNVT--AKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it---~e~a~~~~--~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
-.++|.+|-|+..+..| ...++++. .++|+...| ++-.+.|++.|+.
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~----~~~~~~l~~~G~~ 120 (234)
T 2aef_A 69 VRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGAD 120 (234)
T ss_dssp CTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSS----GGGHHHHHHHTCS
T ss_pred cchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECC----HhHHHHHHHCCCC
Confidence 13799999988765333 34555553 466766543 3344667777875
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.047 Score=45.75 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++|+|.|. |.+|+++++.|.+.|++|+++..
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 578999999997 99999999999999999985543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0034 Score=54.56 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+++++|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d 64 (249)
T 1jw9_B 29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD 64 (249)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 456899999999999999999999998545588854
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.06 Score=47.99 Aligned_cols=100 Identities=17% Similarity=0.227 Sum_probs=59.6
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce------ecCCC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE------KINDS 127 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~------~~~~~ 127 (262)
.+...++|+|+|.|++|..++..|.+.|..|+.+ - +.+.+....+..-.+. .++.. ..++.
T Consensus 15 ~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~-----------~~~~~~~i~~~g~~~~-~~~~~~~~~~~~~~~~ 81 (318)
T 3hwr_A 15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-A-----------RPQHVQAIEATGLRLE-TQSFDEQVKVSASSDP 81 (318)
T ss_dssp -----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-C-----------CHHHHHHHHHHCEEEE-CSSCEEEECCEEESCG
T ss_pred hhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-E-----------cHhHHHHHHhCCeEEE-cCCCcEEEeeeeeCCH
Confidence 3557889999999999999999999999988755 2 3444444444321221 12211 11212
Q ss_pred ccccccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCCC
Q psy14499 128 KEFWSIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPTT 169 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~t 169 (262)
++ . .++|++|-|.....+ .+.+..+ .-.+|+...|+--.
T Consensus 82 ~~-~-~~~D~vilavk~~~~-~~~l~~l~~~l~~~~~iv~~~nGi~~ 125 (318)
T 3hwr_A 82 SA-V-QGADLVLFCVKSTDT-QSAALAMKPALAKSALVLSLQNGVEN 125 (318)
T ss_dssp GG-G-TTCSEEEECCCGGGH-HHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred HH-c-CCCCEEEEEcccccH-HHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence 22 2 489999999877643 3333333 23478888887654
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.077 Score=42.15 Aligned_cols=110 Identities=12% Similarity=0.164 Sum_probs=67.5
Q ss_pred CCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 58 NSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 58 ~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
.++|+|+|. |++|..+++.|.+.|++|. ..| |.-. ...+. +.+.+++.+++- .
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~-~vn-------p~~~-----------g~~i~---G~~~~~sl~el~-~ 69 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVI-PVS-------PKVA-----------GKTLL---GQQGYATLADVP-E 69 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEE-EEC-------SSST-----------TSEET---TEECCSSTTTCS-S
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEE-EeC-------Cccc-----------ccccC---CeeccCCHHHcC-C
Confidence 578999999 8999999999999999854 323 2210 00111 223333244444 4
Q ss_pred CceEEeeCCccCcccccchhc---cCce-EEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 134 PCDILIPAAIEDQITINNANN---VTAK-IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~---~~~k-iIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
++|+.+-|.+.. ...+.+.. ...+ +++.. +..+.+..+.++++|+.++ --|+-|++.
T Consensus 70 ~~Dlvii~vp~~-~v~~v~~~~~~~g~~~i~i~~--~~~~~~l~~~a~~~Gi~~i---gpnc~g~~~ 130 (145)
T 2duw_A 70 KVDMVDVFRNSE-AAWGVAQEAIAIGAKTLWLQL--GVINEQAAVLAREAGLSVV---MDRCPAIEL 130 (145)
T ss_dssp CCSEEECCSCST-HHHHHHHHHHHHTCCEEECCT--TCCCHHHHHHHHTTTCEEE---CSCCHHHHS
T ss_pred CCCEEEEEeCHH-HHHHHHHHHHHcCCCEEEEcC--ChHHHHHHHHHHHcCCEEE---cCCeeeEEc
Confidence 789999887643 22333322 2333 55553 2347888889999999986 345566654
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.023 Score=51.03 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=74.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cCce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IPCD 136 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~~D 136 (262)
..||+|+|+|.++...++.| ..++++++|+|.+ ++ -..+++.+..++.+ + +...+++.++++. .++|
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~-----~~-~~~~~~~~~~~~~~-~----~~~~~~~~~~ll~~~~vD 69 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGV-----PE-EDLSKLEKAISEMN-I----KPKKYNNWWEMLEKEKPD 69 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSS-----TT-CCCHHHHHHHHTTT-C----CCEECSSHHHHHHHHCCS
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCC-----ch-hhHHHHHHHHHHcC-C----CCcccCCHHHHhcCCCCC
Confidence 36999999999998877777 6789999999931 10 01234444333332 1 1233444567775 5799
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCe--EeccccccchhhHHHHHHHHh
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGII--LAPDVITNAGGVIVSYFEWVQ 203 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~--~iPD~~aN~GGvi~s~~E~~~ 203 (262)
+++-|++.. .+.+.+... ...+++|=.=.....|++++ .+++|+. +...+.----..+....++++
T Consensus 70 ~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~ 143 (337)
T 3ip3_A 70 ILVINTVFS-LNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVS 143 (337)
T ss_dssp EEEECSSHH-HHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHH
T ss_pred EEEEeCCcc-hHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHh
Confidence 999988643 344443332 44577774222222455443 3667776 444443333333333444443
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.28 Score=44.65 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=60.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Cce-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGE- 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~- 122 (262)
.||.|-|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.+- . +++
T Consensus 3 ~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~---------~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~ 73 (335)
T 3doc_A 3 VRVAINGFGRIGRNILRAIVESGRTDIQVVAINDL---------GPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGP 73 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECS---------SCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSE
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCC---------CCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEE
Confidence 5899999999999999988775 5889999884 47776554444 22322210 0 111
Q ss_pred --ec--CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 --KI--NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 --~~--~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.. .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 74 I~v~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkViIsap 124 (335)
T 3doc_A 74 IKVHAVRNPAELPWKEENVDIALECTG-IFTSRDKAALHLEAGAKRVIVSAP 124 (335)
T ss_dssp EEEECCSSTTSSCTTTTTCSEEEECSS-SCCSHHHHTHHHHTTCSEEEESSC
T ss_pred EEEEeecccccccccccCCCEEEEccC-ccCCHHHHHHHHHcCCCEEEECCC
Confidence 11 123332 3 468999999985 44566666554 454 666553
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.028 Score=50.62 Aligned_cols=148 Identities=14% Similarity=0.139 Sum_probs=83.6
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNG 99 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~G 99 (262)
||.|. ...+-...|++=...+---+.+++-.+ ..+++.|+|.|..|+..++.|.+ .+.+-|.|.|++
T Consensus 88 tG~p~---a~ld~~~lT~~RTaA~s~laa~~La~~-~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------- 155 (313)
T 3hdj_A 88 DGRPL---ATCDAGTLTRKRTAACTVLAAGALARP-RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-------- 155 (313)
T ss_dssp TCCEE---EEECSHHHHHHHHHHHHHHHHHHHSCT-TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--------
T ss_pred CCCEE---EEEcCchhhhHHHHHHHHHHHHhhccC-CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--------
Confidence 55554 223444556654444433455666443 67899999999999999999977 456555577743
Q ss_pred CCHHHHHHHHH-hcCCccCCCCceecCCCccccccCceEEeeCCccC--cccccchhccCceEEEecCCCCCCHHHHHHH
Q psy14499 100 FNIPKLQKYVT-FTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED--QITINNANNVTAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 100 lD~~~l~~~~~-~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~--~it~e~a~~~~~kiIve~AN~p~t~ea~~~l 176 (262)
..+++.+..+ +.+ + .....+ .++.+ .++||++-|++.. ++..+..+ -.+-++.=|+..|-..|.+..+
T Consensus 156 -~a~~la~~l~~~~g-~----~~~~~~-~~eav-~~aDIVi~aT~s~~pvl~~~~l~-~G~~V~~vGs~~p~~~El~~~~ 226 (313)
T 3hdj_A 156 -ASPEILERIGRRCG-V----PARMAA-PADIA-AQADIVVTATRSTTPLFAGQALR-AGAFVGAIGSSLPHTRELDDEA 226 (313)
T ss_dssp -CCHHHHHHHHHHHT-S----CEEECC-HHHHH-HHCSEEEECCCCSSCSSCGGGCC-TTCEEEECCCSSTTCCCCCHHH
T ss_pred -HHHHHHHHHHHhcC-C----eEEEeC-HHHHH-hhCCEEEEccCCCCcccCHHHcC-CCcEEEECCCCCCchhhcCHHH
Confidence 2334433222 222 1 112222 44554 4899999998753 33322111 1345666677777555555445
Q ss_pred HHCCCeEeccccc
Q psy14499 177 RDKGIILAPDVIT 189 (262)
Q Consensus 177 ~~rgi~~iPD~~a 189 (262)
..+.-.++.|...
T Consensus 227 ~~~a~~v~vD~~~ 239 (313)
T 3hdj_A 227 LRRARAVVVEWRE 239 (313)
T ss_dssp HHHCSEEEESCHH
T ss_pred HhcCCEEEECCHH
Confidence 5565445566543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.21 Score=45.00 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=64.9
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC--C
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN--D 126 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~--~ 126 (262)
++..+....|.+|+|+|.|.||..+++++...|++|+++.. +.+++...+++.|. ...++ +
T Consensus 172 l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~-----------~~~~~~~~~~~lGa------~~vi~~~~ 234 (357)
T 2cf5_A 172 LSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS-----------SNKKREEALQDLGA------DDYVIGSD 234 (357)
T ss_dssp HHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES-----------STTHHHHHHTTSCC------SCEEETTC
T ss_pred HHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeC-----------ChHHHHHHHHHcCC------ceeecccc
Confidence 44444443688999999999999999999999999885543 23343333323331 01111 0
Q ss_pred Ccccc--ccCceEEeeCCccCcccccchhcc--CceEEEecC-CCCCC-HHHHHHHHHCCCeEe
Q psy14499 127 SKEFW--SIPCDILIPAAIEDQITINNANNV--TAKIILEGA-NGPTT-TEADDILRDKGIILA 184 (262)
Q Consensus 127 ~~~il--~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~A-N~p~t-~ea~~~l~~rgi~~i 184 (262)
.+.+. ...+|++++|+.....-....+.+ ..++|.=|. +.+.+ .... +..+++.+.
T Consensus 235 ~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~--~~~~~~~i~ 296 (357)
T 2cf5_A 235 QAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL--LMLGRKVIT 296 (357)
T ss_dssp HHHHHHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH--HHHHTCEEE
T ss_pred HHHHHHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH--HHhCccEEE
Confidence 11121 136899999987542222223333 456555443 33332 2222 555666664
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.12 Score=39.99 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=65.1
Q ss_pred CCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 58 NSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 58 ~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
-++|+|+|. ++.|..+.+.|.+.|++|.-| ||.+ ..+.+ .+.+++..++-+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pV--------nP~~-------------~~i~G---~~~y~sl~dlp~- 58 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPV--------GRKK-------------GEVLG---KTIINERPVIEG- 58 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEE--------SSSC-------------SEETT---EECBCSCCCCTT-
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEE--------CCCC-------------CcCCC---eeccCChHHCCC-
Confidence 468999997 679999999999999988755 2221 11111 112222333332
Q ss_pred CceEEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHH
Q psy14499 134 PCDILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIV 196 (262)
Q Consensus 134 ~~DIlipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~ 196 (262)
.|+.+-+......-+ +.+.+..+|.|+= .-+...+|+.++.++.||.++| |+-|+..
T Consensus 59 -vDlavi~~p~~~v~~~v~e~~~~g~k~v~~-~~G~~~~e~~~~a~~~Girvv~----nC~gv~l 117 (122)
T 3ff4_A 59 -VDTVTLYINPQNQLSEYNYILSLKPKRVIF-NPGTENEELEEILSENGIEPVI----GCTLVML 117 (122)
T ss_dssp -CCEEEECSCHHHHGGGHHHHHHHCCSEEEE-CTTCCCHHHHHHHHHTTCEEEE----SCHHHHH
T ss_pred -CCEEEEEeCHHHHHHHHHHHHhcCCCEEEE-CCCCChHHHHHHHHHcCCeEEC----CcCeEEe
Confidence 676666654322211 2233334453432 2234578999999999999984 7777754
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.021 Score=52.00 Aligned_cols=100 Identities=15% Similarity=0.061 Sum_probs=55.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-------CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC------ceecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG-------AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE------GEKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g-------~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~------~~~~~ 125 (262)
++|+|+|.|++|..++..|.+.| ..|+ +.|.+.... +- ..+..+.+........|+ ....+
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~---~~--~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 95 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVN---GE--RMVDIINNKHENTKYLKGVPLPHNIVAHS 95 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC------C--CHHHHHHHHCBCTTTSTTCBCCTTEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhh---hH--HHHHHHHhcCcccccCCcccCcCCeEEEC
Confidence 58999999999999999999988 7776 666321110 00 033333332111111111 12222
Q ss_pred CCccccccCceEEeeCCccCcccccch----h----ccC-ceEEEecCCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNA----N----NVT-AKIILEGANG 166 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a----~----~~~-~kiIve~AN~ 166 (262)
+..+.. .++|++|.|.....+ .+.+ + .++ -++|+...|+
T Consensus 96 ~~~ea~-~~aDvVilav~~~~~-~~vl~~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 96 DLASVI-NDADLLIFIVPCQYL-ESVLASIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp STHHHH-TTCSEEEECCCHHHH-HHHHHHHTC---CCCCTTCEEEECCCS
T ss_pred CHHHHH-cCCCEEEEcCCHHHH-HHHHHHHhhhhhccCCCCCEEEEeCCc
Confidence 233333 489999999876433 2222 2 232 4578888876
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.03 Score=50.31 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc------eecCCCcccc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG------EKINDSKEFW 131 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~------~~~~~~~~il 131 (262)
.++|+|+|.|++|..++..|.+.|..|+ +.|+ + +.+.+..+..-.+.. ++. ...++.++ +
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~-~~~r----------~-~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~-~ 68 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAIN-VLAR----------G-ATLQALQTAGLRLTE-DGATHTLPVRATHDAAA-L 68 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEE-EECC----------H-HHHHHHHHTCEEEEE-TTEEEEECCEEESCHHH-H
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEE-EEEC----------h-HHHHHHHHCCCEEec-CCCeEEEeeeEECCHHH-c
Confidence 4789999999999999999999999877 5452 2 233333332111111 111 11121222 2
Q ss_pred ccCceEEeeCCccCcccccchhcc-----CceEEEecCCC
Q psy14499 132 SIPCDILIPAAIEDQITINNANNV-----TAKIILEGANG 166 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~ 166 (262)
.++|++|-|.....+ .+.++.+ ...+|+...|+
T Consensus 69 -~~~D~Vilavk~~~~-~~~~~~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 69 -GEQDVVIVAVKAPAL-ESVAAGIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp -CCCSEEEECCCHHHH-HHHHGGGSSSCCTTCEEEECCSS
T ss_pred -CCCCEEEEeCCchhH-HHHHHHHHhhCCCCCEEEEECCC
Confidence 589999999876433 3444443 24588899998
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.037 Score=49.18 Aligned_cols=126 Identities=19% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
+.+||+|+|+ |+.|+.+++.+.+.|.++++..+.+.. | ..+. +...+++.+++.+ .+
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~-----g-------------~~i~---G~~vy~sl~el~~~~~ 64 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG-----G-------------MEVL---GVPVYDTVKEAVAHHE 64 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-----T-------------CEET---TEEEESSHHHHHHHSC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCC-----C-------------ceEC---CEEeeCCHHHHhhcCC
Confidence 4689999999 999999999999999997755443210 0 0011 2223332334432 37
Q ss_pred ceEEeeCCccCcccccc---hhccCce-EEEecCCCCCC--HHHHHHHHHCCCeEe-cc---------------------
Q psy14499 135 CDILIPAAIEDQITINN---ANNVTAK-IILEGANGPTT--TEADDILRDKGIILA-PD--------------------- 186 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~---a~~~~~k-iIve~AN~p~t--~ea~~~l~~rgi~~i-PD--------------------- 186 (262)
+|+.+.+.+.... .+. +-+.+.+ +|+-....+.. .+..+..+++|+.++ |.
T Consensus 65 ~Dv~Ii~vp~~~~-~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vigPNc~Gii~~~~~~~~~~~~~~~~ 143 (288)
T 1oi7_A 65 VDASIIFVPAPAA-ADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFK 143 (288)
T ss_dssp CSEEEECCCHHHH-HHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEEESSSCEEEETTTEEEESSCGGGCC
T ss_pred CCEEEEecCHHHH-HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCeEEcCCCceeEEcccCCCC
Confidence 8999988765432 222 2233566 44433333322 245566677888666 32
Q ss_pred -----ccccchhhHHHHHHHHhh
Q psy14499 187 -----VITNAGGVIVSYFEWVQN 204 (262)
Q Consensus 187 -----~~aN~GGvi~s~~E~~~~ 204 (262)
+++-||++....+.|...
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~ 166 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQ 166 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHh
Confidence 334457777777777764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.05 Score=46.41 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 49 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVI-VSD----------INAEGAKAAAAS 49 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999996 7899999999999999988 666 456666555544
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.073 Score=48.97 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
...||+|+|.| .|+.-++.+.+. +++++||+| .|.++..+..++.| ...+++.+++++ +
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~----------~~~~~a~~~a~~~g-------v~~~~~~~~l~~-~ 66 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLA----------QGSARSRELAHAFG-------IPLYTSPEQITG-M 66 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEEC----------CSSHHHHHHHHHTT-------CCEESSGGGCCS-C
T ss_pred CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEEC----------CCHHHHHHHHHHhC-------CCEECCHHHHhc-C
Confidence 45799999999 698877777664 689999999 57777777777654 223443566764 7
Q ss_pred ceEEeeCCccCccc---ccchhcc---CceEEEecCCCCCC-HHHHHHH---HHCCCeEe
Q psy14499 135 CDILIPAAIEDQIT---INNANNV---TAKIILEGANGPTT-TEADDIL---RDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it---~e~a~~~---~~kiIve~AN~p~t-~ea~~~l---~~rgi~~i 184 (262)
+|+.+=|++...-. .+.+... ...+++|= |+| .|+++++ +++|+.+.
T Consensus 67 ~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EK---Pl~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 67 PDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEH---PLHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp CSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEES---CCCHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEECCCcccchhHHHHHHHHHHcCCcEEEec---CCCHHHHHHHHHHHHHcCCEEE
Confidence 88888777654322 2333332 45588885 465 3444333 67887775
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.089 Score=49.92 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=28.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|..|+ +.|
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~-l~D 84 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETF-LVV 84 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEE
Confidence 689999999999999999999999988 778
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.25 Score=45.09 Aligned_cols=96 Identities=24% Similarity=0.420 Sum_probs=60.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~-- 123 (262)
.||.|-|||.+|+.+.|.+.+. ...+|+|-|. .|++.+.-+.+ .+|.+.+- . +++.
T Consensus 5 ~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~---------~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~ 75 (345)
T 4dib_A 5 TRVAINGFGRIGRMVFRQAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIR 75 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHTTCSSSEEEEEECS---------SCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEE
T ss_pred EEEEEECCCcHHHHHHHHHHhCCCceEEEEcCC---------CCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEE
Confidence 6899999999999999988775 5899999884 57776554444 22322210 0 1111
Q ss_pred c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 ~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+ .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 76 v~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkViISap 124 (345)
T 4dib_A 76 LLNNRDPKELPWTDLGVEVVIEATG-KFNSKEKAILHVEAGAKKVILTAP 124 (345)
T ss_dssp EECCSCGGGSCTTTTTEEEEEECSS-SCCBHHHHTHHHHTTCSEEEESSC
T ss_pred EeecCChhhCCccccCccEEEEecc-CcCCHHHHHHHHHCCCCEEEECCC
Confidence 1 123332 3 468999999985 44566666554 454 666654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.037 Score=51.32 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=68.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee----cCCC---c
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK----INDS---K 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~----~~~~---~ 128 (262)
++|+|+|.|.+|+.+++.|.+.|. .|+ ++| .+.+++.+..++.+...+ +.... +++. +
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~-v~~----------r~~~~~~~la~~l~~~~~-~~~~~~~~D~~d~~~l~ 69 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHIT-LAS----------RTLSKCQEIAQSIKAKGY-GEIDITTVDADSIEELV 69 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEE-EEE----------SCHHHHHHHHHHHHHTTC-CCCEEEECCTTCHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEE-EEE----------CCHHHHHHHHHHhhhhcC-CceEEEEecCCCHHHHH
Confidence 489999999999999999999883 554 777 466666655443211000 01111 1111 1
Q ss_pred cccc-cCceEEeeCCccCcccccchh---ccCceEEEecCCC-CC--C-------HHHHHHHHHCCCeEeccccccch
Q psy14499 129 EFWS-IPCDILIPAAIEDQITINNAN---NVTAKIILEGANG-PT--T-------TEADDILRDKGIILAPDVITNAG 192 (262)
Q Consensus 129 ~il~-~~~DIlipaa~~~~it~e~a~---~~~~kiIve~AN~-p~--t-------~ea~~~l~~rgi~~iPD~~aN~G 192 (262)
+++. .++|++|-|+.... +...+. +-+.. +++-++. +. + .+..+..+++|+.+++..=...|
T Consensus 70 ~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~-vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG 145 (405)
T 4ina_A 70 ALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVP-YLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPG 145 (405)
T ss_dssp HHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCC-EEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTB
T ss_pred HHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCC-EEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCcc
Confidence 2332 35899999987542 222222 12344 4444443 11 1 14556678899998877655444
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.019 Score=50.47 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-----C-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-CccCCCCc------eecC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-----G-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIKDFNEG------EKIN 125 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-----g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~~~~~~------~~~~ 125 (262)
++|.|+|.|++|..++..|.+. | ..|+ +.|+ .+.+.++.++.| .+...++. ...+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r-----------~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 76 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVS-WIAR-----------GAHLEAIRAAGGLRVVTPSRDFLARPTCVTD 76 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEE-EECC-----------HHHHHHHHHHTSEEEECSSCEEEECCSEEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEE-EEEc-----------HHHHHHHHhcCCeEEEeCCCCeEEecceEec
Confidence 5899999999999999999988 8 8877 5552 334444443122 12111111 1112
Q ss_pred CCccccccCceEEeeCCccCcccccchhcc----C-ceEEEecCCCCCC
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNANNV----T-AKIILEGANGPTT 169 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a~~~----~-~kiIve~AN~p~t 169 (262)
..+.. .++|++|-|.....+ .+.+..+ + .++|+.-.|+.-+
T Consensus 77 -~~~~~-~~~D~vil~vk~~~~-~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 77 -NPAEV-GTVDYILFCTKDYDM-ERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp -CHHHH-CCEEEEEECCSSSCH-HHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred -Ccccc-CCCCEEEEecCcccH-HHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 22222 489999999876654 3333333 2 4578888888644
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.5 Score=43.00 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=60.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee-
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK- 123 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~- 123 (262)
..||.|-|||.+|+.+.|.+.+. ...||+|-|. .|++.+.-+.+ .+|.+.+- . +++.
T Consensus 4 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~---------~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I 74 (338)
T 3lvf_P 4 AVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDL---------TDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEV 74 (338)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECS---------SCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEE
T ss_pred cEEEEEECCCcHHHHHHHHHHHCCCceEEEEecC---------CCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEE
Confidence 46899999999999999988775 5899999883 57776544443 23433210 0 1111
Q ss_pred -c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 -I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 -~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+ .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 75 ~v~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkViISap 124 (338)
T 3lvf_P 75 KSFSEPDASKLPWKDLNIDVVLECTG-FYTDKDKAQAHIEAGAKKVLISAP 124 (338)
T ss_dssp EEECCSCGGGSCTTTTTCSEEEECSS-SCCBHHHHHHHHHTTCSEEEESSC
T ss_pred EEEEecccccCCccccCCCEEEEccC-CcCCHHHHHHHHHcCCCEEEECCC
Confidence 1 123332 2 468999999984 44566665554 454 666654
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.011 Score=50.63 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeC
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQD 89 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D 89 (262)
-||-|-.-++..-+.+|.+ +..+|+|.|.|+.|+.+++.+ .+.|++++|+.|
T Consensus 64 ~GY~V~~L~~~i~~~Lg~~-~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D 117 (212)
T 3keo_A 64 FGYDVKKLMNFFAEILNDH-STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFD 117 (212)
T ss_dssp SSEEHHHHHHHHHHHTTTT-SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEE
T ss_pred CCEEHHHHHHHHHHHhCCC-CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEe
Confidence 3666655555555567776 567999999999999999974 456899999998
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.27 Score=44.57 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKIN 125 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~ 125 (262)
++..+.. .|.+|+|+|.|.||..+++++...|+ +|+ ++| .+.+++.. .++.|. +-++......+
T Consensus 175 l~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi-~~~----------~~~~~~~~-a~~lGa~~vi~~~~~~~~~ 241 (370)
T 4ej6_A 175 VDLSGIK-AGSTVAILGGGVIGLLTVQLARLAGATTVI-LST----------RQATKRRL-AEEVGATATVDPSAGDVVE 241 (370)
T ss_dssp HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEC----------SCHHHHHH-HHHHTCSEEECTTSSCHHH
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEE-EEC----------CCHHHHHH-HHHcCCCEEECCCCcCHHH
Confidence 3444444 67899999999999999999999999 676 555 34455433 333331 11111110000
Q ss_pred CCcc---ccccCceEEeeCCccCcccccchhcc--CceEEEecCCC---CCCHHHHHHHHHCCCeEec
Q psy14499 126 DSKE---FWSIPCDILIPAAIEDQITINNANNV--TAKIILEGANG---PTTTEADDILRDKGIILAP 185 (262)
Q Consensus 126 ~~~~---il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~---p~t~ea~~~l~~rgi~~iP 185 (262)
...+ +..-.+|++++|+.....-.+....+ ..++|.=|... +.+... ..+..+++.+.-
T Consensus 242 ~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~-~~~~~~~~~i~g 308 (370)
T 4ej6_A 242 AIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEP-FDILFRELRVLG 308 (370)
T ss_dssp HHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCH-HHHHHTTCEEEE
T ss_pred HHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCH-HHHHhCCcEEEE
Confidence 0001 11126999999986432212222222 46666554332 222222 234566776654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.14 Score=48.33 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-++|+|+|.|.+|..+|..|.+.|+.|+ +.|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~-l~D 67 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVV-AVE 67 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEE-EEE
Confidence 3589999999999999999999999987 767
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.13 Score=46.13 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V 87 (262)
.+.+|+|+|.|.||..+++++...|+ +|+++
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~ 198 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVS 198 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 88999999999999999999999999 88844
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.089 Score=49.29 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++++++|.|+|.|..|.++|++|.+.|++|. ++|.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~-~~D~ 40 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVT-VNDG 40 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEE-EEES
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEE-EEeC
Confidence 5789999999999999999999999999988 8885
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.046 Score=46.86 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 51 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVA-IAD----------IDIERARQAAAE 51 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999996 8899999999999999988 556 356666555544
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.21 Score=43.95 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHH----CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFK----AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW 131 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~----~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il 131 (262)
.+..||+|+|+|.+|+..++.|.+ .+.++++|+|.+- + .++. +.. ..+.++++
T Consensus 5 ~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-------~--------a~~~-------g~~-~~~~~ell 61 (294)
T 1lc0_A 5 SGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-------L--------GSLD-------EVR-QISLEDAL 61 (294)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-------C--------CEET-------TEE-BCCHHHHH
T ss_pred CCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-------H--------HHHc-------CCC-CCCHHHHh
Confidence 355799999999999998888764 5789999998531 0 0111 111 12245666
Q ss_pred c-cCceEEeeCCccCcccccchhcc---CceEEEecCCCCC--C-HHHHH---HHHHCCCeEeccccccchhhHHHHHHH
Q psy14499 132 S-IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPT--T-TEADD---ILRDKGIILAPDVITNAGGVIVSYFEW 201 (262)
Q Consensus 132 ~-~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t-~ea~~---~l~~rgi~~iPD~~aN~GGvi~s~~E~ 201 (262)
. .++|+++-|++. ..+.+.+... ...+++|= |+ + .|+++ ..+++|+.+.-.+..--...+....++
T Consensus 62 ~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EK---Pla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~ 137 (294)
T 1lc0_A 62 RSQEIDVAYICSES-SSHEDYIRQFLQAGKHVLVEY---PMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRRE 137 (294)
T ss_dssp HCSSEEEEEECSCG-GGHHHHHHHHHHTTCEEEEES---CSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHH
T ss_pred cCCCCCEEEEeCCc-HhHHHHHHHHHHCCCcEEEeC---CCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHH
Confidence 3 578999999874 3455554443 34477773 54 3 33433 335678776544433333333333343
Q ss_pred H
Q psy14499 202 V 202 (262)
Q Consensus 202 ~ 202 (262)
+
T Consensus 138 i 138 (294)
T 1lc0_A 138 V 138 (294)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=94.66 E-value=0.41 Score=43.56 Aligned_cols=98 Identities=17% Similarity=0.319 Sum_probs=60.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC-C---C-C------ce
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD-F---N-E------GE 122 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~-~---~-~------~~ 122 (262)
..||.|-|||.+|+.+.|.+.+. ...||+|-|. ..|++.+.-+.+ .+|.+.+ - . + ++
T Consensus 3 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~--------~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk 74 (337)
T 3v1y_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDP--------FITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEK 74 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECT--------TSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTE
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCcEEEEEeCC--------CCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCE
Confidence 46899999999999999988775 5889999882 137776554443 2343332 0 0 0 11
Q ss_pred ec-----CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 123 KI-----NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 123 ~~-----~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+ .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 75 ~I~v~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~a~~hl~aGAkkViIsap 126 (337)
T 3v1y_O 75 PVTVFGIRNPDEIPWAEAGAEYVVESTG-VFTDKEKAAAHLKGGAKKVVISAP 126 (337)
T ss_dssp EEEEECCSSGGGCCHHHHTCCEEEECSS-SCCSHHHHTHHHHTTCCEEEESSC
T ss_pred EEEEEEecCcccCCccccCCcEEEEecc-ccCCHHHHHHHHHcCCCEEEECCC
Confidence 11 112222 2 358999999985 44566665554 465 666543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.13 Score=45.79 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=47.5
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccccc
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il~~ 133 (262)
.+.+|+|+|. |.+|..+++++...|++|+++.. +.+++....++.|. +.++.+....+...++...
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG-----------GAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES-----------SHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC-----------CHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCC
Confidence 6889999998 99999999999999999985543 45555554343332 1111110000000011123
Q ss_pred CceEEeeCCcc
Q psy14499 134 PCDILIPAAIE 144 (262)
Q Consensus 134 ~~DIlipaa~~ 144 (262)
.+|++++|+..
T Consensus 218 ~~d~vi~~~g~ 228 (336)
T 4b7c_A 218 GIDVFFDNVGG 228 (336)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 69999999875
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.038 Score=44.64 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=28.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~-v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVH-LFDK 33 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEE-EEEC
Confidence 569999999999999999999999988 8885
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.14 Score=46.38 Aligned_cols=76 Identities=20% Similarity=0.090 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCceecCCCccccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~~~~~~~~il~ 132 (262)
-.+++|+|+|.|+||+.++..|...|. .++ +.| ++.+++.-..........| +..+..++..+.+
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~-l~D----------~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~- 74 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIG-IVD----------IFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDA- 74 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEe----------CChHHHHHHHhhHhhhhhhcCCcEEEECcHHHh-
Confidence 356899999999999999999988776 555 778 5666554322111001111 2222222223333
Q ss_pred cCceEEeeCCc
Q psy14499 133 IPCDILIPAAI 143 (262)
Q Consensus 133 ~~~DIlipaa~ 143 (262)
.+|||+|-++.
T Consensus 75 ~~aDiVvi~ag 85 (326)
T 3vku_A 75 KDADLVVITAG 85 (326)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEECCC
Confidence 59999988765
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.3 Score=38.45 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++|+|+|. |+.|..+++.|.+.|++|..| |+.+. ...+. +...+++.+++-
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~v-------------np~~~------~~~i~---G~~~~~sl~el~- 68 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPV-------------NPRFQ------GEELF---GEEAVASLLDLK- 68 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEE-------------CGGGT------TSEET---TEECBSSGGGCC-
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEe-------------CCCcc------cCcCC---CEEecCCHHHCC-
Confidence 3579999999 899999999999999985433 22210 01111 222232233333
Q ss_pred cCceEEeeCCccCcccccc---hhccCce-EEEecCCCCCCHHHHHHHHHCCCeEeccccccchhhHHHH
Q psy14499 133 IPCDILIPAAIEDQITINN---ANNVTAK-IILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 198 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~---a~~~~~k-iIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s~ 198 (262)
.++|+.+-|.+.... .+. +-....| +++.. +....++.+..+++|+.++ --|+-|++...
T Consensus 69 ~~vDlavi~vp~~~~-~~v~~~~~~~gi~~i~~~~--g~~~~~~~~~a~~~Gir~v---gpnc~g~~~~~ 132 (140)
T 1iuk_A 69 EPVDILDVFRPPSAL-MDHLPEVLALRPGLVWLQS--GIRHPEFEKALKEAGIPVV---ADRCLMVEHKR 132 (140)
T ss_dssp SCCSEEEECSCHHHH-TTTHHHHHHHCCSCEEECT--TCCCHHHHHHHHHTTCCEE---ESCCHHHHHHH
T ss_pred CCCCEEEEEeCHHHH-HHHHHHHHHcCCCEEEEcC--CcCHHHHHHHHHHcCCEEE---cCCccceEChh
Confidence 367877776654211 111 2222333 33322 1237888899999999884 44777877644
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.09 Score=44.13 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~-~~~ 38 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVV-AVS 38 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 3678999999997 8999999999999999988 444
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.022 Score=48.48 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=47.6
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHH--HHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLF--FKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS 127 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L--~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~ 127 (262)
+.+|.+ +..+|+|+|+|++|+.+++.+ .. |++++|++| .|+++.- ..+.++| ....++.
T Consensus 73 ~~lg~~-~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D----------~dp~k~g------~~i~gv~-V~~~~dl 133 (211)
T 2dt5_A 73 HILGLN-RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFD----------VDPEKVG------RPVRGGV-IEHVDLL 133 (211)
T ss_dssp HHHTTT-SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEE----------SCTTTTT------CEETTEE-EEEGGGH
T ss_pred HHhCcC-CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEe----------CCHHHHh------hhhcCCe-eecHHhH
Confidence 344654 457999999999999999863 33 899999998 3443211 1111111 1112223
Q ss_pred ccccccCceEEeeCCccC
Q psy14499 128 KEFWSIPCDILIPAAIED 145 (262)
Q Consensus 128 ~~il~~~~DIlipaa~~~ 145 (262)
++++..++|+++-|.+..
T Consensus 134 ~ell~~~ID~ViIA~Ps~ 151 (211)
T 2dt5_A 134 PQRVPGRIEIALLTVPRE 151 (211)
T ss_dssp HHHSTTTCCEEEECSCHH
T ss_pred HHHHHcCCCEEEEeCCch
Confidence 344422899999998754
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.038 Score=48.94 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|.||...++.|.+.|++|+ |.|
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~Vt-Via 43 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLT-LVS 43 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEE-EEE
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEE-EEc
Confidence 47899999999999999999999999999988 544
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.17 Score=47.05 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=55.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCC---EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGA---KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~---~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
...+|+|+|. |+||+++++.+...|+ .|. +.| ... ... | .. + +++
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~-v~D------------~~~----~~~-g-------~~-~---~~i-- 261 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANIL-KWD------------IKE----TSR-G-------GP-F---DEI-- 261 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEE-EEC------------HHH----HTT-C-------SC-C---THH--
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceE-Eee------------ccc----ccc-C-------Cc-h---hhH--
Confidence 4678999999 9999999999999998 554 766 221 011 1 10 1 223
Q ss_pred cCceEEeeCCc-----cCcccccchhcc-C-ceEEEecC
Q psy14499 133 IPCDILIPAAI-----EDQITINNANNV-T-AKIILEGA 164 (262)
Q Consensus 133 ~~~DIlipaa~-----~~~it~e~a~~~-~-~kiIve~A 164 (262)
.++||+|-|.+ +.++|.+.+.++ + -.+||+-|
T Consensus 262 ~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 262 PQADIFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHSSEEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred hhCCEEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 38999999987 688999999988 3 55777654
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.31 Score=44.69 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
-.|.+|+|+|.|.||..+++++...|+ +|++ +|
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~-~~ 245 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVIL-SE 245 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEE-EC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE-EC
Confidence 368899999999999999999999999 7774 44
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.63 Score=41.68 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=31.0
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEE
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAI 87 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V 87 (262)
++..+.. .|.+|+|+|.|.||..+++++...|+ +|+++
T Consensus 164 l~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~ 202 (356)
T 1pl8_A 164 CRRGGVT-LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVT 202 (356)
T ss_dssp HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3444443 67899999999999999999999999 88744
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.1 Score=43.73 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~-~~~ 38 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVV-AVT 38 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999997 8999999999999999988 444
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.12 Score=51.52 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|..+|..|.+.|+.|+ +.|
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~-l~D 342 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVI-LKE 342 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEE-EEC
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEE-EEE
Confidence 579999999999999999999999987 777
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.088 Score=46.47 Aligned_cols=33 Identities=33% Similarity=0.457 Sum_probs=28.5
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..++|.|+| +|++|..+++.|.+.|..|+ +.|.
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~-~~~~ 53 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDR 53 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECT
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 446899999 99999999999999999877 6563
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.055 Score=49.27 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=27.8
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCC-CEEEEEeCC
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAG-AKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g-~~vv~V~D~ 90 (262)
+||+|.| +|.+|+.+++.|.+.. ..++++++.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~ 38 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSR 38 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCS
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECc
Confidence 6899999 8999999999998764 688888873
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.24 E-value=0.076 Score=48.46 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++.+|+|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~ 150 (353)
T 3h5n_A 116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDN 150 (353)
T ss_dssp HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 46889999999999999999999999876768884
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.1 Score=47.71 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=54.7
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC--CCceecCCCccccc
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF--NEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~--~~~~~~~~~~~il~ 132 (262)
+..||+|.| +|.+|+.+++.|.+.. ..++++.|.. +.|...+... +.+.+. .+-. +.+ ++.+.
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~-----~~g~~~~~~~------~~~~~~v~~dl~-~~~-~~~~~ 81 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR-----KAGQSMESVF------PHLRAQKLPTLV-SVK-DADFS 81 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST-----TTTSCHHHHC------GGGTTSCCCCCB-CGG-GCCGG
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch-----hcCCCHHHhC------chhcCcccccce-ecc-hhHhc
Confidence 457999999 9999999999998864 6899888742 3344443321 111110 0101 111 33443
Q ss_pred cCceEEeeCCccCcccccchhcc--CceEEEecC
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAKIILEGA 164 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~kiIve~A 164 (262)
++|+++.|++.. .+.+.+... .+++|--++
T Consensus 82 -~vDvVf~atp~~-~s~~~a~~~~aG~~VId~sa 113 (359)
T 1xyg_A 82 -TVDAVFCCLPHG-TTQEIIKELPTALKIVDLSA 113 (359)
T ss_dssp -GCSEEEECCCTT-THHHHHHTSCTTCEEEECSS
T ss_pred -CCCEEEEcCCch-hHHHHHHHHhCCCEEEECCc
Confidence 899999998643 344444443 345444444
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.22 Score=45.14 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=31.7
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++..+.. .|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 187 l~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~ 225 (369)
T 1uuf_A 187 LRHWQAG-PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT 225 (369)
T ss_dssp HHHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4444433 67899999999999999999999999987554
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.059 Score=46.22 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=36.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 51 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVL-LTG----------RNESNIARIREE 51 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999996 7899999999999999988 555 355666555543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.11 Score=44.91 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 40 (270)
T 1yde_A 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVV-ICD 40 (270)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999996 8899999999999999988 555
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.07 E-value=0.054 Score=48.42 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=62.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc---cC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS---IP 134 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~---~~ 134 (262)
..+++|.|+|.+|+.+++.|.+.|. ++ +.| .|++.+. ..+. +...-+-+++ + ++.+.. .+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~-vid----------~~~~~~~-~~~~-~~~~i~gd~~--~-~~~L~~a~i~~ 177 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FV-LAE----------DENVRKK-VLRS-GANFVHGDPT--R-VSDLEKANVRG 177 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EE-EES----------CGGGHHH-HHHT-TCEEEESCTT--S-HHHHHHTCSTT
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EE-EEe----------CChhhhh-HHhC-CcEEEEeCCC--C-HHHHHhcChhh
Confidence 4589999999999999999999998 76 667 4666655 4332 1100000110 1 111211 47
Q ss_pred ceEEeeCCccCcc---cccchhccC--ceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 135 CDILIPAAIEDQI---TINNANNVT--AKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 135 ~DIlipaa~~~~i---t~e~a~~~~--~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
+|.++-++..+.. ....++++. .++|+...| ++..+.|++.|+.
T Consensus 178 a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iiar~~~----~~~~~~l~~~G~d 226 (336)
T 1lnq_A 178 ARAVIVDLESDSETIHCILGIRKIDESVRIIAEAER----YENIEQLRMAGAD 226 (336)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHTTCTTSEEEEECSS----GGGHHHHHHTTCS
T ss_pred ccEEEEcCCccHHHHHHHHHHHHHCCCCeEEEEECC----HHHHHHHHHcCCC
Confidence 8999988765432 234455553 467776533 4445677888875
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.14 Score=45.70 Aligned_cols=107 Identities=19% Similarity=0.234 Sum_probs=61.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
...+++|+|+ |+.|+.+++.|.+.|.++++-.+.+.. |- .+. +...+++.+++.+ .+
T Consensus 12 ~~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~-----g~-------------~i~---G~~vy~sl~el~~~~~ 70 (297)
T 2yv2_A 12 SETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKG-----GS-------------EVH---GVPVYDSVKEALAEHP 70 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT-----TC-------------EET---TEEEESSHHHHHHHCT
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCC-----Cc-------------eEC---CEeeeCCHHHHhhcCC
Confidence 4567888898 999999999999999996655443200 00 011 2233332344543 24
Q ss_pred -ceEEeeCCccCccc--ccchhccCce-EEEecCCCCCC--HHHHHHHHHCCCeEe
Q psy14499 135 -CDILIPAAIEDQIT--INNANNVTAK-IILEGANGPTT--TEADDILRDKGIILA 184 (262)
Q Consensus 135 -~DIlipaa~~~~it--~e~a~~~~~k-iIve~AN~p~t--~ea~~~l~~rgi~~i 184 (262)
+|+.+.+.+....- -+.+-+.+.+ +|+-....+.. .+..+..+++|+.++
T Consensus 71 ~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 71 EINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp TCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 89999888764332 1223334677 44433332221 244566678898666
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.08 Score=46.05 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
..++++++++|.|. |.+|+++++.|.+.|++|+ +.| .+.+.+.+..++
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 70 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVV-VAD----------VNEDAAVRVANE 70 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SSHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 35688999999996 7899999999999999988 556 355666555544
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.08 Score=46.05 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=36.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~~ 48 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVA-VLD----------KSAERLRELEVA 48 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999996 7899999999999999998 555 356666655544
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.23 Score=43.34 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|+|.|. |-+|+++++.|.+.|++|+++..
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 43 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999997 99999999999999999985543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.14 Score=45.19 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=40.1
Q ss_pred HHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 49 ASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
++.|...|+|+.++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.
T Consensus 20 ~~~Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~-i~~----------r~~~~l~~~~~~~ 73 (273)
T 4fgs_A 20 FQSMTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVF-ITG----------RRKDVLDAAIAEI 73 (273)
T ss_dssp -----CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHH
T ss_pred hhhhcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHc
Confidence 344555799999999997 5699999999999999988 777 5677777766554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.076 Score=45.37 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 36 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVV-LAD 36 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 478899999996 8999999999999999988 555
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.15 Score=46.01 Aligned_cols=75 Identities=23% Similarity=0.115 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHH--hcCCccCC-CCceecCCCcccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVT--FTRSIKDF-NEGEKINDSKEFW 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~--~~g~~~~~-~~~~~~~~~~~il 131 (262)
..++|+|+|.|.||+.++..|...|. .++ +.| +|.+++..... +.+ ..-+ ++.+..++..+.+
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~-l~D----------~~~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~a~ 71 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELV-VID----------VNKEKAMGDVMDLNHG-KAFAPQPVKTSYGTYEDC 71 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SCHHHHHHHHHHHHHT-GGGSSSCCEEEEECGGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEE-EEe----------cchHHHHHHHHHHHhc-cccccCCeEEEeCcHHHh
Confidence 35799999999999999999988886 555 777 66665543211 111 1111 1222222122333
Q ss_pred ccCceEEeeCCcc
Q psy14499 132 SIPCDILIPAAIE 144 (262)
Q Consensus 132 ~~~~DIlipaa~~ 144 (262)
.++||+|-++..
T Consensus 72 -~~aDvVvi~ag~ 83 (326)
T 3pqe_A 72 -KDADIVCICAGA 83 (326)
T ss_dssp -TTCSEEEECCSC
T ss_pred -CCCCEEEEeccc
Confidence 589999988754
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.01 Score=49.84 Aligned_cols=89 Identities=15% Similarity=0.232 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
+++++|.|+|+|++|+.+++.|.+.|.+|+ +.|++-. .+.+ .+. +....+ ..+.+ .++
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~-~~~r~~~--------~~~~---~~~--------g~~~~~-~~~~~-~~a 74 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVV-FGSRNPQ--------VSSL---LPR--------GAEVLC-YSEAA-SRS 74 (201)
Confidence 678899999999999999999999998876 5553211 1111 111 111112 33444 378
Q ss_pred eEEeeCCccCcccccch---hccCceEEEecCCCC
Q psy14499 136 DILIPAAIEDQITINNA---NNVTAKIILEGANGP 167 (262)
Q Consensus 136 DIlipaa~~~~it~e~a---~~~~~kiIve~AN~p 167 (262)
|+++-|.....+ .+.. .....++|+..+|+-
T Consensus 75 DvVilav~~~~~-~~v~~l~~~~~~~ivI~~~~G~ 108 (201)
T 2yjz_A 75 DVIVLAVHREHY-DFLAELADSLKGRVLIDVSNNQ 108 (201)
Confidence 999888765432 2221 112345888888875
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.08 Score=46.11 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.| .+.+++.+..++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~-~~~----------r~~~~~~~~~~~ 59 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVI-MAV----------RDTRKGEAAART 59 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHH
Confidence 688999999996 8899999999999999988 555 356666555443
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.074 Score=45.99 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=36.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++|+.|.+.|++|+ +.| .+.+++.+..++
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~~ 70 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVG-LHG----------TREDKLKEIAAD 70 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999996 7899999999999999988 555 355666555544
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.22 Score=45.42 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.|.+|+|+|.|.||..++++++..|+ +|+ ++|
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi-~~~ 217 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVI-VGD 217 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEE-EEc
Confidence 67899999999999999999999999 566 445
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.077 Score=52.93 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.-++|+|+|.|.+|..+|..|.+.|+.|+ +.|
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~-l~D 344 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPIL-MKD 344 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEE-EEC
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEE-EEE
Confidence 34679999999999999999999999987 777
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.54 Score=41.96 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=28.4
Q ss_pred CCCeEEEE-cCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQ-GFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~Iq-GfG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|+ |.|.||..+++++...|++|+++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~ 181 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITT 181 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEE
Confidence 68999999 79999999999999999999854
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.15 Score=46.66 Aligned_cols=32 Identities=31% Similarity=0.268 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEe
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~ 88 (262)
.|.+|+|+|.|.||..++++++..|+ +|+++.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~ 217 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGD 217 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 68899999999999999999999999 888543
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.09 Score=44.70 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 38 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIA-IAD 38 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEc
Confidence 3578999999985 8899999999999999988 445
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.34 Score=43.31 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++..+.. .+.+|+|.|.|.||..+++++...|++|+ ++|
T Consensus 161 l~~~~~~-~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi-~~~ 199 (352)
T 1e3j_A 161 CRRAGVQ-LGTTVLVIGAGPIGLVSVLAAKAYGAFVV-CTA 199 (352)
T ss_dssp HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCEEE-EEc
Confidence 3433443 67899999999999999999999999976 444
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.24 Score=44.23 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=31.6
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++..+.. .+.+|+|+|.|.+|..+++++...|++|++ +|
T Consensus 157 l~~~~~~-~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~-~~ 195 (339)
T 1rjw_A 157 LKVTGAK-PGEWVAIYGIGGLGHVAVQYAKAMGLNVVA-VD 195 (339)
T ss_dssp HHHHTCC-TTCEEEEECCSTTHHHHHHHHHHTTCEEEE-EC
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCEEEE-Ee
Confidence 3444433 578999999999999999999999999884 44
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.16 Score=45.17 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.+.+|+|.|.|.||..++++++..|++|+++.
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~ 197 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVD 197 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 68899999999999999999999999998553
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.31 Score=43.25 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred CCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 56 IINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 56 l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
-.+.+|+|.| .|.+|..+++++...|++|+++.
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~ 180 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVA 180 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3788999999 79999999999999999998554
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.23 Score=44.80 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=29.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~ 220 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTS 220 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 68899999999999999999999999998553
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.44 Score=42.22 Aligned_cols=109 Identities=16% Similarity=0.165 Sum_probs=62.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC--CCCc-----eecCCCcccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD--FNEG-----EKINDSKEFW 131 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~--~~~~-----~~~~~~~~il 131 (262)
++|+|+|.|++|..++..|.+.|..|+ +.+++ +.+++ .+..-.+.+ +++. ...++.+++.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~-~~~r~---------~~~~i---~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~ 69 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVS-VVSRS---------DYETV---KAKGIRIRSATLGDYTFRPAAVVRSAAELE 69 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEE-EECST---------THHHH---HHHCEEEEETTTCCEEECCSCEESCGGGCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC---------hHHHH---HhCCcEEeecCCCcEEEeeeeeECCHHHcC
Confidence 689999999999999999999999887 44421 12222 221111221 1111 1122123332
Q ss_pred ccCceEEeeCCccCcccccchhcc----C-ceEEEecCCCCCC-HHHHHHHHHCCCe
Q psy14499 132 SIPCDILIPAAIEDQITINNANNV----T-AKIILEGANGPTT-TEADDILRDKGII 182 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~----~-~kiIve~AN~p~t-~ea~~~l~~rgi~ 182 (262)
.++|++|-|.....+. +.++.+ + ..+|+-..|+--. ....+.|-+..|.
T Consensus 70 -~~~DlVilavK~~~~~-~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 70 -TKPDCTLLCIKVVEGA-DRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp -SCCSEEEECCCCCTTC-CHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEE
T ss_pred -CCCCEEEEecCCCChH-HHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEE
Confidence 3899999998766543 333333 2 3578888888654 3344555444343
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.1 Score=44.93 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 54 LNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 54 ~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+|+|++++|.|.+ -+|+++|+.|.+.|++|+ ++|.
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vv-i~~r 40 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLV-FTYR 40 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEE-EEES
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 37899999999974 599999999999999988 7763
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.61 E-value=0.14 Score=46.30 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCccccc-
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFWS- 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il~- 132 (262)
.+.+|+|+|.|.||..++++++..|+ +|+++ | .+.+++...+ +.|. +-++.... + .+.+.+
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~-~----------~~~~~~~~a~-~lGa~~vi~~~~~~-~--~~~~~~~ 254 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAV-D----------IVESRLELAK-QLGATHVINSKTQD-P--VAAIKEI 254 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE-E----------SCHHHHHHHH-HHTCSEEEETTTSC-H--HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE-C----------CCHHHHHHHH-HcCCCEEecCCccC-H--HHHHHHh
Confidence 67899999999999999999999999 57744 4 2445543333 3331 11111100 0 011221
Q ss_pred --cCceEEeeCCccCcccccchhcc--CceEEEecCCC---CCCHHHHHHHHHCCCeEec
Q psy14499 133 --IPCDILIPAAIEDQITINNANNV--TAKIILEGANG---PTTTEADDILRDKGIILAP 185 (262)
Q Consensus 133 --~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~---p~t~ea~~~l~~rgi~~iP 185 (262)
-.+|++++|+.......+..+.+ ..++|.=|... +.+-.... +..+++.+..
T Consensus 255 ~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~-~~~~~~~i~g 313 (371)
T 1f8f_A 255 TDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVND-LLLGGKTILG 313 (371)
T ss_dssp TTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHH-HHHTTCEEEE
T ss_pred cCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHH-HHhCCCEEEE
Confidence 26999999986432222333333 45665544322 22211222 4456776653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.13 Score=44.79 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-i~~----------~~~~~~~~~~ 50 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVI-LND----------IRATLLAESV 50 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-ECC----------SCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHH
Confidence 789999999996 6699999999999999988 888 5666655543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.13 Score=44.69 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+|+|+.++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv-~~~----------~~~~~~~~~~~ 49 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVV-AVE----------LLEDRLNQIVQ 49 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEE----------CCHHHHHHHHH
Confidence 689999999997 5699999999999999988 777 56666655544
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.04 Score=47.03 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=25.4
Q ss_pred hCCCCCCCeEEEEcCCHHHHHHHHH--HHHCCCEEEEEeC
Q psy14499 52 INLNIINSKISIQGFGNVGSVAANL--FFKAGAKIVAIQD 89 (262)
Q Consensus 52 ~g~~l~~~~v~IqGfG~VG~~~a~~--L~~~g~~vv~V~D 89 (262)
+|.+ +..+|+|+|.|++|+.+++. +...|++++++.|
T Consensus 80 lg~~-~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D 118 (215)
T 2vt3_A 80 LDQD-EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFD 118 (215)
T ss_dssp HHHC----CEEEECCSHHHHHHHHCC------CCEEEEEE
T ss_pred hCcC-CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEe
Confidence 3443 45789999999999999994 4456899999998
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.077 Score=46.21 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.| .+.+.+.+..++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~~ 72 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVL-CAD----------IDGDAADAAATK 72 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEE-EEE----------SSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 578999999986 7899999999999999988 556 355555555443
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.50 E-value=1.8 Score=38.02 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=62.9
Q ss_pred HHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC-C
Q psy14499 49 ASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-D 126 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-~ 126 (262)
++..+.. .|.+|+|+| .|.||..++++++..|++|++++. .++ +++.++.|. ...++ .
T Consensus 145 l~~~~~~-~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~------------~~~-~~~~~~lGa------~~~i~~~ 204 (321)
T 3tqh_A 145 LNQAEVK-QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS------------KRN-HAFLKALGA------EQCINYH 204 (321)
T ss_dssp HHHTTCC-TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC------------HHH-HHHHHHHTC------SEEEETT
T ss_pred HHhcCCC-CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec------------cch-HHHHHHcCC------CEEEeCC
Confidence 3433333 688999997 999999999999999999986643 233 233333331 01111 0
Q ss_pred Ccc-ccc--cCceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 127 SKE-FWS--IPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 127 ~~~-il~--~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
..+ +.+ ..+|++++|+..... ....+.+ ..++|.=+.. ..+.....+..+++.+.
T Consensus 205 ~~~~~~~~~~g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~g~~--~~~~~~~~~~~~~~~~~ 264 (321)
T 3tqh_A 205 EEDFLLAISTPVDAVIDLVGGDVG-IQSIDCLKETGCIVSVPTI--TAGRVIEVAKQKHRRAF 264 (321)
T ss_dssp TSCHHHHCCSCEEEEEESSCHHHH-HHHGGGEEEEEEEEECCST--THHHHHHHHHHTTCEEE
T ss_pred CcchhhhhccCCCEEEECCCcHHH-HHHHHhccCCCEEEEeCCC--CchhhhhhhhhcceEEE
Confidence 111 111 479999999876544 3333333 3555543321 11222223456677665
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.2 Score=44.79 Aligned_cols=33 Identities=24% Similarity=0.479 Sum_probs=29.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.|.+|+|+|. |.+|..+++++...|++|+++..
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~ 192 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN 192 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 6899999998 99999999999999999986554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.31 Score=43.24 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=44.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|.||..++..|...|. .|+ +.| +|.+++............+ +..+...+..+.+ .+|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~-L~D----------~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~-~~a 68 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELV-LVD----------RDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSEL-ADA 68 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC----------SSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGG-TTC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEe----------CCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHh-CCC
Confidence 489999999999999999999987 766 777 5665544322211111111 1222111122233 489
Q ss_pred eEEeeCCc
Q psy14499 136 DILIPAAI 143 (262)
Q Consensus 136 DIlipaa~ 143 (262)
|++|.|+.
T Consensus 69 DvVIi~~~ 76 (304)
T 2v6b_A 69 QVVILTAG 76 (304)
T ss_dssp SEEEECC-
T ss_pred CEEEEcCC
Confidence 99999984
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=93.35 E-value=0.31 Score=43.59 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++..+.. .|.+|+|+|.|.||..+++++...|+ +|+ ++|
T Consensus 159 l~~~~~~-~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi-~~~ 198 (352)
T 3fpc_A 159 AELANIK-LGDTVCVIGIGPVGLMSVAGANHLGAGRIF-AVG 198 (352)
T ss_dssp HHHTTCC-TTCCEEEECCSHHHHHHHHHHHTTTCSSEE-EEC
T ss_pred HHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEC
Confidence 3443443 67899999999999999999999999 677 455
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.26 Score=44.13 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=28.4
Q ss_pred CC--CeEEEEcC-CHHHHHHHHHHHHCCC-EEEEEe
Q psy14499 57 IN--SKISIQGF-GNVGSVAANLFFKAGA-KIVAIQ 88 (262)
Q Consensus 57 ~~--~~v~IqGf-G~VG~~~a~~L~~~g~-~vv~V~ 88 (262)
.+ .+|+|.|. |.+|..+++++...|+ +|+++.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~ 193 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGIC 193 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 56 89999998 9999999999999999 888443
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.25 Score=44.11 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.5
Q ss_pred CCCeEEEEcCC-HHHHHHHHHHHHC-CCEEEEEeC
Q psy14499 57 INSKISIQGFG-NVGSVAANLFFKA-GAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG-~VG~~~a~~L~~~-g~~vv~V~D 89 (262)
.+.+|+|.|.| .+|..+++++... |++|+ ++|
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi-~~~ 203 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATII-GVD 203 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEE-EEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEE-EEc
Confidence 67899999998 9999999999998 99988 444
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.18 Score=44.69 Aligned_cols=75 Identities=27% Similarity=0.269 Sum_probs=46.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--Ccee-cCCCcccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--EGEK-INDSKEFWSI 133 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--~~~~-~~~~~~il~~ 133 (262)
++|+|+|.|++|..++..|.+.| ..|+ +.| .+.+++.......+....+. ..+. .++. +.+ .
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~-l~d----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~-~ 68 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FID----------ANEAKVKADQIDFQDAMANLEAHGNIVINDW-AAL-A 68 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGG-T
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEc----------CCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHh-C
Confidence 48999999999999999999888 5665 777 56655544432211000010 1121 1212 333 4
Q ss_pred CceEEeeCCccCc
Q psy14499 134 PCDILIPAAIEDQ 146 (262)
Q Consensus 134 ~~DIlipaa~~~~ 146 (262)
+||++|-|.....
T Consensus 69 ~aDvViiav~~~~ 81 (309)
T 1hyh_A 69 DADVVISTLGNIK 81 (309)
T ss_dssp TCSEEEECCSCGG
T ss_pred CCCEEEEecCCcc
Confidence 8999999987543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.27 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+.+|+|.|. |.+|+.+++++...|++|++ +|
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~-~~ 177 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVG-AA 177 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEE-EE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEE-Ee
Confidence 6889999998 99999999999999999884 44
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.053 Score=46.33 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~-~~~ 38 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVL-GLD 38 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999996 7899999999999999988 554
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.26 Score=44.66 Aligned_cols=31 Identities=39% Similarity=0.531 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V 87 (262)
.+.+|+|+|.|.||..++++++..|+ +|+++
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~ 224 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGI 224 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence 68899999999999999999999999 77744
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.36 Score=48.37 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=28.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|.+|+.+|..+...|+.|+ +.|
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~-l~D 346 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVV-AVE 346 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEE-EEC
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchh-ccc
Confidence 699999999999999999999999998 888
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.28 Score=42.63 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|.
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vv-i~~r 41 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVV-CAAR 41 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEE-EEeC
Confidence 789999999997 5699999999999999988 7774
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.083 Score=45.62 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 42 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVV-LAD 42 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEc
Confidence 4688999999996 8899999999999999988 555
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.1 Score=45.36 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~~ 71 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVA-LAG----------RRLDALQETAAE 71 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHH
Confidence 467889999986 7899999999999999988 555 356666665544
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.26 Score=45.47 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=37.8
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEe-CCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQ-DDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~-D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
++|+|.|+ |.+|+..++.+.++ +++|++++ + -|++.|.+..++.+
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~----------~n~~~l~~q~~~f~ 51 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFH----------SNLELAFKIVKEFN 51 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEES----------SCHHHHHHHHHHHT
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEcc----------CCHHHHHHHHHHcC
Confidence 78999995 99999999999887 68999994 5 68888888766554
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.095 Score=49.41 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++|+|+|.|.||...++.|.+.|++|+ |.|
T Consensus 8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~-vi~ 42 (457)
T 1pjq_A 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLT-VNA 42 (457)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEE-EEE
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCcCEEE-EEc
Confidence 46889999999999999999999999999988 544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=93.10 E-value=0.43 Score=43.20 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCc-eec-CCCccc
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEG-EKI-NDSKEF 130 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~-~~~-~~~~~i 130 (262)
....++|+|+|.|.||..++..|...|. .++ +.| ++.+++............|+.. ..+ .+..+-
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~-L~D----------i~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~ 84 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELA-LVD----------VIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV 84 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC----------SCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEE-EEe----------CChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH
Confidence 3567899999999999999999988886 555 778 5665443322111101112211 111 111222
Q ss_pred cccCceEEeeCCc
Q psy14499 131 WSIPCDILIPAAI 143 (262)
Q Consensus 131 l~~~~DIlipaa~ 143 (262)
+ .+|||+|-++.
T Consensus 85 ~-~~aDiVvi~aG 96 (331)
T 4aj2_A 85 T-ANSKLVIITAG 96 (331)
T ss_dssp G-TTEEEEEECCS
T ss_pred h-CCCCEEEEccC
Confidence 3 69999987764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.2 Score=45.00 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCCeEEEE-cCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQ-GFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~Iq-GfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.+.+|+|. |.|.+|..+++++...|++|+++.
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~ 199 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATA 199 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEe
Confidence 68899999 689999999999999999988553
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.086 Score=45.70 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcC-CH--HHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GN--VGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~--VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |. +|+++|+.|.+.|++|+ ++|
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~-~~~ 59 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELA-FTY 59 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEE-Eee
Confidence 578999999996 55 99999999999999988 554
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.24 Score=43.88 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=56.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce---ecCCCccccccC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE---KINDSKEFWSIP 134 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~---~~~~~~~il~~~ 134 (262)
.++|+|+|.|++|..++..|. .|..|+ +.++ +.+.+..+.+..-.+.. ++.. .++...+. ..+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~-~~~r----------~~~~~~~l~~~G~~~~~-~~~~~~~~~~~~~~~-~~~ 67 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVT-VVTR----------RQEQAAAIQSEGIRLYK-GGEEFRADCSADTSI-NSD 67 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEE-EECS----------CHHHHHHHHHHCEEEEE-TTEEEEECCEEESSC-CSC
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceE-EEEC----------CHHHHHHHHhCCceEec-CCCeecccccccccc-cCC
Confidence 378999999999999999999 999887 5452 34444444433212211 1111 11100112 247
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCH
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTT 170 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ 170 (262)
+|++|-|.....+ .+.++.+ ....|+-..|+--..
T Consensus 68 ~D~vilavK~~~~-~~~l~~l~~~~~~~ivs~~nGi~~~ 105 (307)
T 3ego_A 68 FDLLVVTVKQHQL-QSVFSSLERIGKTNILFLQNGMGHI 105 (307)
T ss_dssp CSEEEECCCGGGH-HHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred CCEEEEEeCHHHH-HHHHHHhhcCCCCeEEEecCCccHH
Confidence 9999998765433 2233333 222377888876443
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.089 Score=44.64 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=30.1
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~ 42 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLL 42 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 3678999999986 899999999999999999844
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.97 E-value=0.17 Score=45.01 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc-cC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS-IP 134 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~-~~ 134 (262)
...+++|+|+ |+.|+.+++.|.+.|+++++-.+.+.. |- .+. +...+++.+++.+ .+
T Consensus 12 ~~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~-----g~-------------~i~---G~~vy~sl~el~~~~~ 70 (294)
T 2yv1_A 12 ENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKG-----GQ-------------NVH---GVPVFDTVKEAVKETD 70 (294)
T ss_dssp TTCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCT-----TC-------------EET---TEEEESSHHHHHHHHC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCC-----Cc-------------eEC---CEeeeCCHHHHhhcCC
Confidence 3467889999 999999999999999986644443200 00 011 2222332334442 27
Q ss_pred ceEEeeCCccCccc--ccchhccCceEEEe-cCCCCCC--HHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQIT--INNANNVTAKIILE-GANGPTT--TEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it--~e~a~~~~~kiIve-~AN~p~t--~ea~~~l~~rgi~~i 184 (262)
+|+.+.+++....- -+.+-+.+.+.++. ....+.. .+..+..+++|+.++
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 89999888754321 12233346774443 3332221 244566677888666
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=1.3 Score=40.66 Aligned_cols=98 Identities=15% Similarity=0.328 Sum_probs=58.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-----CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccC---C--------
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK-----AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKD---F-------- 118 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~-----~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~---~-------- 118 (262)
..||.|-|||.+|+.+.|.|.+ ....||+|-|. -.|++.+.-+.+ .+|.+.+ .
T Consensus 2 ~~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~--------~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~ 73 (359)
T 3ids_C 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDM--------NTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVA 73 (359)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECS--------SCCHHHHHHHHHEETTTEECSSCEEEECSCTTSS
T ss_pred ceEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecC--------CCCHHHHHHHhcccCCCCCEeeEEEecccccccC
Confidence 3589999999999999998433 25789999883 157776544443 2232211 0
Q ss_pred CC------cee---c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 119 NE------GEK---I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 119 ~~------~~~---~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
.+ ++. . .+++++ | +.++|++++|+. ...+.+-+... .|| +|+.+.
T Consensus 74 ~~~~l~inGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG-~f~s~e~A~~hl~aGAkkViISap 136 (359)
T 3ids_C 74 KDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTG-LFTAKAAAEGHLRGGARKVVISAP 136 (359)
T ss_dssp SCCEEEETTEEEEECCCCSSTTTSCHHHHTCCEEEECSS-SCCBHHHHTHHHHTTCCEEEESSC
T ss_pred CCCEEEECCEEEEEEEccCCcccCCccccCccEEEEecc-ccCCHHHHHHHHHcCCCEEEECCC
Confidence 00 111 1 013322 2 458899999984 44566665554 465 666554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.7 Score=41.21 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=29.1
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|+| .|.||..+++++...|++|+++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~ 181 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT 181 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 688999999 7999999999999999999977
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.15 Score=44.93 Aligned_cols=39 Identities=26% Similarity=0.456 Sum_probs=31.0
Q ss_pred HHhCCCCC-CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 50 SKINLNII-NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 50 ~~~g~~l~-~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++.+..+. +. |+|+|. |.||..++++++..|++|+++..
T Consensus 139 ~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~ 179 (324)
T 3nx4_A 139 EDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSG 179 (324)
T ss_dssp HHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred hhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 44455443 35 999998 99999999999999999996653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.94 E-value=0.19 Score=44.97 Aligned_cols=76 Identities=22% Similarity=0.174 Sum_probs=46.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhc-CCccCCCCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFT-RSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~-g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
++|+|+|.|++|..++..|.+.|. .|+ +.| .+.+++....... ..+.-.+......+..+.+ .+|
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~-l~D----------~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~~a 68 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMV-LID----------VDKKRAEGDALDLIHGTPFTRRANIYAGDYADL-KGS 68 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG-TTC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEe----------CChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHh-CCC
Confidence 479999999999999999999887 776 677 5655554432210 0000001111111122233 589
Q ss_pred eEEeeCCccCc
Q psy14499 136 DILIPAAIEDQ 146 (262)
Q Consensus 136 DIlipaa~~~~ 146 (262)
|++|.|.....
T Consensus 69 DvViiav~~~~ 79 (319)
T 1a5z_A 69 DVVIVAAGVPQ 79 (319)
T ss_dssp SEEEECCCCCC
T ss_pred CEEEEccCCCC
Confidence 99999987543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.3 Score=43.23 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=29.0
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.+.+|+|.| .|.+|..+++++...|++|+++.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~ 172 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTV 172 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 688999999 79999999999999999998554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.43 Score=42.39 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|.|. |.+|+.+++++...|++|+++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~ 186 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGS 186 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 6889999997 999999999999999998844
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.2 Score=42.77 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcC-C-HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-G-NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G-~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. | .+|+++++.|.+.|++|+ +.|
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~-~~~ 54 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVV-ISD 54 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEE-Eec
Confidence 478999999998 8 599999999999999988 555
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.12 Score=43.12 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~-~~~ 36 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVG-LMA 36 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 5678999985 8999999999999999988 444
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.14 Score=45.64 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=28.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++|+|+|.|.+|..+|..|.+.|++|+ |.|+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~-v~Er 32 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVT-IYER 32 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEE-EEec
Confidence 689999999999999999999999988 8875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.31 Score=43.99 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=28.8
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.+.+|+|+| .|.+|..+++++...|++|+++.
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~ 195 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTC 195 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEE
Confidence 688999999 79999999999999999988543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.49 Score=42.53 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++.++|+|+|.|.||..++..|...+. .++ +.|
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~-l~D 36 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVV-LFD 36 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEE-EEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEE-EEe
Confidence 456799999999999999999988876 655 777
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.14 Score=50.01 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+++.+|+|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 324 kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~ 359 (598)
T 3vh1_A 324 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 359 (598)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 578999999999999999999999999877779984
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.37 Score=42.56 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=54.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-CccCC-CCc-----eecCCCcccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SIKDF-NEG-----EKINDSKEFW 131 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~~~~-~~~-----~~~~~~~~il 131 (262)
++|+|+|.|++|..++..|.+.|..|+ +.+++ ..++ .. +.| .+... ++. ...++.++ .
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~-~~~r~---------~~~~---i~-~~g~~~~~~~g~~~~~~~~~~~~~~~-~ 67 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVH-FLLRR---------DYEA---IA-GNGLKVFSINGDFTLPHVKGYRAPEE-I 67 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEE-EECST---------THHH---HH-HTCEEEEETTCCEEESCCCEESCHHH-H
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEEcC---------cHHH---HH-hCCCEEEcCCCeEEEeeceeecCHHH-c
Confidence 689999999999999999999999877 44421 1222 22 222 11110 111 11121222 2
Q ss_pred ccCceEEeeCCccCcccccchhcc-----CceEEEecCCCCC
Q psy14499 132 SIPCDILIPAAIEDQITINNANNV-----TAKIILEGANGPT 168 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~-----~~kiIve~AN~p~ 168 (262)
.++|+++-|.....+. +.++.+ ...+|+-..|+--
T Consensus 68 -~~~D~vilavk~~~~~-~~l~~l~~~l~~~~~iv~l~nGi~ 107 (312)
T 3hn2_A 68 -GPMDLVLVGLKTFANS-RYEELIRPLVEEGTQILTLQNGLG 107 (312)
T ss_dssp -CCCSEEEECCCGGGGG-GHHHHHGGGCCTTCEEEECCSSSS
T ss_pred -CCCCEEEEecCCCCcH-HHHHHHHhhcCCCCEEEEecCCCC
Confidence 4899999998765543 333333 2457888888854
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.31 Score=42.04 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 6 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 42 (281)
T 3svt_A 6 QLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVM-IVG 42 (281)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 35788999999996 8899999999999999988 556
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.36 Score=41.11 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 38 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIV-LVA 38 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEc
Confidence 4678999999996 8899999999999999988 445
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.52 Score=42.23 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++.++|+|+|.|.||..++..|...|. .++ +.|
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~-l~D 39 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVV-LVD 39 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEE-EEC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCCeEE-EEe
Confidence 456799999999999999999999998 766 777
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.94 Score=40.78 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc-
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW- 131 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il- 131 (262)
.+.+|+|+| .|.||..+++++.. .|++|+++ | .+.+++...++ .|. +-++.+ .+ .+.+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~-~----------~~~~~~~~~~~-lGad~vi~~~~--~~--~~~v~~ 234 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIAT-A----------SRPETQEWVKS-LGAHHVIDHSK--PL--AAEVAA 234 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEE-C----------SSHHHHHHHHH-TTCSEEECTTS--CH--HHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEE-e----------CCHHHHHHHHH-cCCCEEEeCCC--CH--HHHHHH
Confidence 688999999 89999999999987 68999854 4 24455433332 331 111110 00 01122
Q ss_pred --ccCceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 132 --SIPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
...+|++++|+.....-.+..+.+ ..++|.=+...++... .+..+++.+.
T Consensus 235 ~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~---~~~~k~~~i~ 288 (363)
T 4dvj_A 235 LGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDPSAFDIM---LFKRKAVSIH 288 (363)
T ss_dssp TCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCCSSCCGG---GGTTTTCEEE
T ss_pred hcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCCCccchH---HHhhccceEE
Confidence 136899999987542222222223 4666655443333321 2344555553
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.38 E-value=0.086 Score=45.67 Aligned_cols=36 Identities=31% Similarity=0.561 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+++.+|+|+|.|.+|..+++.|.+.|..-+.+.|.+
T Consensus 26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d 61 (251)
T 1zud_1 26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61 (251)
T ss_dssp HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999998777788853
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.35 Score=40.77 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~-~~~ 40 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVV-VAD 40 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEc
Confidence 4678999999996 8899999999999999988 555
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.38 Score=42.94 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=44.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHH----HHHhcCCccCCCCceecCCCccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQK----YVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~----~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
+-++|+|+|.|.||..++..|...+. .++ ..| +|.+++.. +... ...... ..+...+..+.
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~-l~D----------i~~~~~~~~~~dl~~~-~~~~~~-~~~i~~~~~~a 71 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIV-LID----------ANESKAIGDAMDFNHG-KVFAPK-PVDIWHGDYDD 71 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SSHHHHHHHHHHHHHH-TTSSSS-CCEEEECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEE-EEe----------CCcchHHHHHhhHHHH-hhhcCC-CeEEEcCcHHH
Confidence 34699999999999999999887664 555 667 55543322 1111 111110 12211212333
Q ss_pred cccCceEEeeCCccC
Q psy14499 131 WSIPCDILIPAAIED 145 (262)
Q Consensus 131 l~~~~DIlipaa~~~ 145 (262)
+ .+||++|.|+...
T Consensus 72 l-~~aDvViia~~~~ 85 (316)
T 1ldn_A 72 C-RDADLVVICAGAN 85 (316)
T ss_dssp T-TTCSEEEECCSCC
T ss_pred h-CCCCEEEEcCCCC
Confidence 3 5999999997543
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.16 Score=43.68 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++|+|.|.|-+|+++++.|.+.|++|+++..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r 34 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRR 34 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 467999999999999999999999999997764
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.44 Score=42.83 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEe
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~ 88 (262)
.+.+|+|+|.|.||..++++++.. |++|+++.
T Consensus 186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~ 218 (359)
T 1h2b_A 186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD 218 (359)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 678999999999999999999988 99988554
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.18 Score=43.14 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCeEEEEcC---CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF---GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf---G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~-~~~ 42 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTY 42 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEc
Confidence 67899999997 6899999999999999988 444
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=92.17 E-value=0.2 Score=45.80 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D 89 (262)
++|+|+|.|++|..+|..|.+ .|..|+ +.|
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~-~~~ 33 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVR-VLT 33 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEE-EEC
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEE-EEe
Confidence 589999999999999999988 498877 444
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.17 Score=48.46 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=64.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----c
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----S 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~ 132 (262)
...+++|+|+|.+|+.+++.|.+.|..++ +.| -|++.+.+..+..+...-+-++. ..+.| -
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vv-vid----------~~~~~~~~~~~~~~~~~i~Gd~~----~~~~L~~a~i 190 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFV-VVT----------DNYDQALHLEEQEGFKVVYGSPT----DAHVLAGLRV 190 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEE-EEE----------SCHHHHHHHHHSCSSEEEESCTT----CHHHHHHTTG
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEE-EEE----------CCHHHHHHHHHhcCCeEEEeCCC----CHHHHHhcCc
Confidence 45689999999999999999999999988 667 57877766665412100000111 12222 1
Q ss_pred cCceEEeeCCccCcccc---cchhcc-CceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 133 IPCDILIPAAIEDQITI---NNANNV-TAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
.++|.++- +..+..|- -.++++ ..++|+... +++-.+.|++.|+.
T Consensus 191 ~~a~~vi~-t~~D~~n~~~~~~ar~~~~~~iiar~~----~~~~~~~l~~~Gad 239 (565)
T 4gx0_A 191 AAARSIIA-NLSDPDNANLCLTVRSLCQTPIIAVVK----EPVHGELLRLAGAN 239 (565)
T ss_dssp GGCSEEEE-CSCHHHHHHHHHHHHTTCCCCEEEECS----SGGGHHHHHHHTCS
T ss_pred ccCCEEEE-eCCcHHHHHHHHHHHHhcCceEEEEEC----CHHHHHHHHHcCCC
Confidence 47888885 55443332 223333 345666543 34556677777774
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.065 Score=46.21 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=28.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 58 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVI-ISY 58 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEE-EEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 3678999999996 8899999999999999988 555
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.44 Score=42.54 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCeEEEEcCCHHHHH-HHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSV-AANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~-~a~~L~~~g~~vv~V~D~ 90 (262)
.++|.|+|.|..|.+ +|++|.+.|++|. ++|.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~-~~D~ 36 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVS-GCDA 36 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEE-EEcC
Confidence 468999999999995 9999999999987 8885
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.34 Score=43.52 Aligned_cols=32 Identities=38% Similarity=0.455 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
+.++|+|+|.|.+|..+|..|...|. . |.+.|
T Consensus 13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~-V~L~D 45 (328)
T 2hjr_A 13 MRKKISIIGAGQIGSTIALLLGQKDLGD-VYMFD 45 (328)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEE
Confidence 44799999999999999999999998 7 44778
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.56 Score=41.62 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=44.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHH----HHHHhcCCccCCC-Cceec-CCCccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQ----KYVTFTRSIKDFN-EGEKI-NDSKEF 130 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~----~~~~~~g~~~~~~-~~~~~-~~~~~i 130 (262)
++|+|+|.|.||..++..|...|. .++ +.| ++.+++. ++..... .|+ ..+.. .+..+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~-L~D----------~~~~~~~g~~~dl~~~~~---~~~~~~~i~~t~d~~a 66 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIA-LVD----------IAEDLAVGEAMDLAHAAA---GIDKYPKIVGGADYSL 66 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEE-EEC----------SSHHHHHHHHHHHHHHHH---TTTCCCEEEEESCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEE----------CChHHHHHHHHHHHhhhh---hcCCCCEEEEeCCHHH
Confidence 489999999999999999988886 665 777 5665543 1111110 121 11211 112333
Q ss_pred cccCceEEeeCCcc
Q psy14499 131 WSIPCDILIPAAIE 144 (262)
Q Consensus 131 l~~~~DIlipaa~~ 144 (262)
+ .++|++|-++..
T Consensus 67 ~-~~aDiVViaag~ 79 (294)
T 1oju_A 67 L-KGSEIIVVTAGL 79 (294)
T ss_dssp G-TTCSEEEECCCC
T ss_pred h-CCCCEEEECCCC
Confidence 3 589999988754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.11 Score=46.78 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
+.++|+|+|.|.+|..++..|...|. . |.+.|
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~-V~L~D 40 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYD 40 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCE-EEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEE
Confidence 34689999999999999999999887 7 44777
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.11 Score=44.81 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=28.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~ 36 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTA 36 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 357889999986 8899999999999999998443
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.77 Score=41.17 Aligned_cols=105 Identities=14% Similarity=0.073 Sum_probs=65.8
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCCCceeeCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFG--NVGSVAANLFFKAGAKIVAIQDDKTTIYNPN 98 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG--~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~ 98 (262)
.+.|+-.||..+.-+--+..=+..+++ +.| +++|++|+++|=| +|..+++..+..+|+++. ++- |.
T Consensus 115 ~~vPVINa~~~~~HPtQaLaDl~Ti~e---~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~-~~~-------P~ 182 (307)
T 2i6u_A 115 ATVPVINALSDEFHPCQVLADLQTIAE---RKG-ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVT-VAA-------PE 182 (307)
T ss_dssp CSSCEEESCCSSCCHHHHHHHHHHHHH---HHS-CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEC-------CT
T ss_pred CCCCEEcCCCCCcCccHHHHHHHHHHH---HhC-CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEE-EEC-------Cc
Confidence 457888888644444444444444443 334 6899999999986 999999999999999987 544 55
Q ss_pred CCCHH-HHHHH----HHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 99 GFNIP-KLQKY----VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 99 GlD~~-~l~~~----~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|+.++ .+.+. .++.|. ..+..+++++.+ .++||+.--..
T Consensus 183 ~~~~~~~~~~~~~~~a~~~G~-----~~~~~~d~~eav-~~aDvvy~~~w 226 (307)
T 2i6u_A 183 GFLPDPSVRAAAERRAQDTGA-----SVTVTADAHAAA-AGADVLVTDTW 226 (307)
T ss_dssp TSCCCHHHHHHHHHHHHHHTC-----CEEEESCHHHHH-TTCSEEEECCS
T ss_pred cccCCHHHHHHHHHHHHHcCC-----eEEEEECHHHHh-cCCCEEEecce
Confidence 55443 23322 223331 112223345555 48999987554
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.55 Score=42.42 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=30.2
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
-.|.+|+|.|. |.||..+++++...|++|++++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~ 196 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC 196 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 47889999999 9999999999999999998775
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.43 Score=40.55 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 38 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLL-LFS 38 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 4578999999996 8899999999999999988 455
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.84 Score=39.23 Aligned_cols=94 Identities=19% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCc
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~ 135 (262)
..++..|.|+ |.+|+.+++...+.+..+++..|+.+. + ++ .++
T Consensus 11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------------------------~---~l--~~~ 54 (228)
T 1vm6_A 11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------------------------E---EL--DSP 54 (228)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------------------------E---EC--SCC
T ss_pred ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------------------------c---cc--cCC
Confidence 3567889997 999999999887889999999885431 0 11 268
Q ss_pred eEEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHH----CCCeEecccc
Q psy14499 136 DILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRD----KGIILAPDVI 188 (262)
Q Consensus 136 DIlipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~----rgi~~iPD~~ 188 (262)
||+|+-+.+..... +.+.+.+.++|+.-.. ++++-.+.|++ .++++.|.|.
T Consensus 55 DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~~a~~~~vv~apNfS 111 (228)
T 1vm6_A 55 DVVIDFSSPEALPKTVDLCKKYRAGLVLGTTA--LKEEHLQMLRELSKEVPVVQAYNFS 111 (228)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCEEEECCCS--CCHHHHHHHHHHTTTSEEEECSCCC
T ss_pred CEEEECCCHHHHHHHHHHHHHcCCCEEEeCCC--CCHHHHHHHHHHHhhCCEEEecccc
Confidence 99999987654322 3334446677776553 55554444433 3455555553
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.33 Score=41.63 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=32.1
Q ss_pred hCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 52 INLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 52 ~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+..++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 4 m~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~-~~~ 41 (267)
T 3t4x_A 4 MHMQLKGKTALVTGSTAGIGKAIATSLVAEGANVL-ING 41 (267)
T ss_dssp CCCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 345789999999996 7899999999999999988 555
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.37 Score=43.21 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++|+|+|.|.||..++..|...|. . |.+.|
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~D 35 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGD-VVLFD 35 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCe-EEEEe
Confidence 589999999999999999999987 7 54778
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.62 Score=41.29 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=64.3
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceec
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKI 124 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~ 124 (262)
+++..+.. .|.+|+|.|.|.+|..++.++... |++|+++ | .+.+++...++ .|. +-+|.+...
T Consensus 155 ~l~~~~~~-~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~-~----------~~~~r~~~~~~-~Ga~~~i~~~~~~~- 220 (348)
T 4eez_A 155 AIKVSGVK-PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAV-D----------INQDKLNLAKK-IGADVTINSGDVNP- 220 (348)
T ss_dssp HHHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEE-E----------SCHHHHHHHHH-TTCSEEEEC-CCCH-
T ss_pred eecccCCC-CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEE-E----------CcHHHhhhhhh-cCCeEEEeCCCCCH-
Confidence 34444443 678999999999999999998875 7888854 4 24555433333 221 111111110
Q ss_pred CCCcccc----ccCceEEeeCCccCcccccchhcc--CceEEEecCCC-CCCHHHHHHHHHCCCeEec
Q psy14499 125 NDSKEFW----SIPCDILIPAAIEDQITINNANNV--TAKIILEGANG-PTTTEADDILRDKGIILAP 185 (262)
Q Consensus 125 ~~~~~il----~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~-p~t~ea~~~l~~rgi~~iP 185 (262)
.+++. ..++|+.++|+.....-......+ ..+++.-|.-. +.+... ..+..+++.+..
T Consensus 221 --~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~g 285 (348)
T 4eez_A 221 --VDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSV-PTVVFDGVEVAG 285 (348)
T ss_dssp --HHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECH-HHHHHSCCEEEE
T ss_pred --HHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCH-HHHHhCCeEEEE
Confidence 01222 247899999886543222333333 35555544322 222222 234556777653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.23 Score=42.30 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~-~~~ 38 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVF-AGR 38 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999996 7899999999999999988 555
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.097 Score=46.66 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=27.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
.++|+|+|.|.+|..++..|.+.|. .|+ +.|.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~-l~D~ 36 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVV-LFDI 36 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEE-EEeC
Confidence 4689999999999999999999897 754 7773
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=0.21 Score=42.84 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++|.|+|.|++|..++..|.+.|..|+ +.|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~-~~~r 31 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQ-GWLR 31 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEE-EEEc
Confidence 479999999999999999999999887 5554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.33 Score=44.00 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
..++|+|+|.|.||+.++..|...|. .++ +.|
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~-L~D 53 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVA-LVD 53 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEE-EEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEE-EEE
Confidence 46899999999999999999988886 555 778
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.54 Score=41.99 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHH--hcCCccCC-CCceecCCCccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVT--FTRSIKDF-NEGEKINDSKEF 130 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~--~~g~~~~~-~~~~~~~~~~~i 130 (262)
++.++|+|+|.|+||..++..|...+. .++ ..| +|.+++..... ... .... ...+...+..+.
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~-L~D----------i~~~~~~g~~~dl~~~-~~~~~~~~~v~~~~~~a 71 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELV-IID----------LDTEKVRGDVMDLKHA-TPYSPTTVRVKAGEYSD 71 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEE-EEC----------SCHHHHHHHHHHHHHH-GGGSSSCCEEEECCGGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEe----------CChhHhhhhhhhHHhh-hhhcCCCeEEEeCCHHH
Confidence 356799999999999999999887774 444 777 56654432111 111 1111 111211113333
Q ss_pred cccCceEEeeCCccC
Q psy14499 131 WSIPCDILIPAAIED 145 (262)
Q Consensus 131 l~~~~DIlipaa~~~ 145 (262)
+ .+||++|-++...
T Consensus 72 ~-~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 72 C-HDADLVVICAGAA 85 (317)
T ss_dssp G-TTCSEEEECCCCC
T ss_pred h-CCCCEEEECCCCC
Confidence 4 5999999887643
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=91.68 E-value=0.44 Score=40.42 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 43 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVI-LLG 43 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 7899999999999999988 555
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.5 Score=42.40 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=28.2
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|.| .|.+|..+++++...|++|+++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~ 193 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVT 193 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEE
Confidence 688999999 7999999999999999998854
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.43 Score=41.65 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~-~~~ 80 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVA-INY 80 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 7899999999999999988 655
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=0.48 Score=40.52 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~ 39 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVA-FCA 39 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 4688999999996 7899999999999999988 556
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.47 Score=40.41 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 38 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIA-LLD 38 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 3578999999986 8899999999999999988 555
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.4 Score=39.99 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=30.4
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
..++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 37 (248)
T 2pnf_A 2 EIKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIIT 37 (248)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 34678999999986 899999999999999998844
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.39 Score=40.28 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~-~~~ 45 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVV-LLG 45 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 8899999999999999988 555
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.7 Score=40.61 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+.++|+|+|.|.||..++..|.+.|. .|+ +.|
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~-l~d 39 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIV-LED 39 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEe
Confidence 34699999999999999999999997 776 667
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.076 Score=45.89 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=29.0
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.-++|.|+|.|++|.++++.|.+.|.+|+++
T Consensus 3 ~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~ 35 (232)
T 3dfu_A 3 QAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVL 35 (232)
T ss_dssp CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEEC
T ss_pred CCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEe
Confidence 345579999999999999999999999998853
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.2 Score=44.59 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQGFG-NVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.|.+|+|+|.| .+|..+++++...|++|+++.
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~ 176 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVT 176 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEe
Confidence 68899999997 999999999999999998654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.2 Score=45.55 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.6
Q ss_pred CCeEEEEc-CCHHHHHHHHHHHHC-CCEEEEEeC
Q psy14499 58 NSKISIQG-FGNVGSVAANLFFKA-GAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqG-fG~VG~~~a~~L~~~-g~~vv~V~D 89 (262)
.+||+|.| +|.+|+.+++.|.+. ...++++.+
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 36899999 999999999999876 478888874
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.78 Score=40.78 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V 87 (262)
.+.+|+|+|.|.||..++++++.. +.+|+++
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~ 202 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAV 202 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 688999999999999999999887 7888855
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.51 Score=39.95 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=37.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++| -+.+.+.+..++
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 52 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVV-IVD----------RDKAGAERVAGE 52 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHH
Confidence 4678999999996 7899999999999999988 555 355666555544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.43 E-value=0.45 Score=40.67 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 42 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLV-LAA 42 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEE-EEe
Confidence 4578999999997 6799999999999999988 555
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.37 Score=40.97 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=29.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~ 38 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVV-LIA 38 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEE-EEE
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 4578999999996 8899999999999999988 555
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.55 Score=40.08 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 38 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVV-FGD 38 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 3578999999995 8899999999999999988 445
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.38 Score=41.52 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++|+.|.+.|++|+ ++|
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~-~~~ 57 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARIL-ING 57 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-ECC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 3689999999996 7899999999999999988 666
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.34 Score=41.67 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi-~~~----------r~~~~~~~~~~~ 73 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVV-IAD----------LAAEKGKALADE 73 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe----------CChHHHHHHHHH
Confidence 578999999996 7899999999999999988 556 356666555544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.34 E-value=1.1 Score=41.97 Aligned_cols=112 Identities=14% Similarity=0.216 Sum_probs=70.7
Q ss_pred HHHHhCCCCCCCeEEEEcCC----------HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC
Q psy14499 48 IASKINLNIINSKISIQGFG----------NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG----------~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~ 117 (262)
+.+.++.+++++||+|.|+- .-...+++.|.++|++|. + |||.-. + +..+.
T Consensus 312 i~~~l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~-~-------~DP~~~--~---~~~~~------ 372 (446)
T 4a7p_A 312 VIKAMGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVK-A-------YDPEGV--E---QASKM------ 372 (446)
T ss_dssp HHHHTTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEE-E-------ECSSCH--H---HHGGG------
T ss_pred HHHHhcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEE-E-------ECCCCC--H---hHHHh------
Confidence 34556778999999999985 457899999999999987 5 445421 1 11211
Q ss_pred CCCceecCCCccccccCceEEeeCCccCc---ccccc-hhccCceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQ---ITINN-ANNVTAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 118 ~~~~~~~~~~~~il~~~~DIlipaa~~~~---it~e~-a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
|++.+..++.++.+ .++|+++-++.-+. ++-+. ...++.++|+++-|.. .++ .+++.|..|
T Consensus 373 ~~~~~~~~~~~~~~-~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~i~D~r~~~-~~~---~~~~~g~~y 437 (446)
T 4a7p_A 373 LTDVEFVENPYAAA-DGADALVIVTEWDAFRALDLTRIKNSLKSPVLVDLRNIY-PPA---ELERAGLQY 437 (446)
T ss_dssp CSSCCBCSCHHHHH-TTBSEEEECSCCTTTTSCCHHHHHTTBSSCBEECSSCCS-CHH---HHHHTTCBC
T ss_pred cCCceEecChhHHh-cCCCEEEEeeCCHHhhcCCHHHHHHhcCCCEEEECCCCC-CHH---HHHhcCCEE
Confidence 22222222223344 48999999886543 33332 3345778999999865 333 345677655
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.56 Score=39.56 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~-~~~ 38 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVA-ACD 38 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 4678999999986 8999999999999999988 444
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.33 E-value=0.43 Score=40.01 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~ 35 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGT 35 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 578999999986 889999999999999999844
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.39 Score=40.89 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~----------r~~~~~~~~~~ 48 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVV-ITG----------RTKEKLEEAKL 48 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHH
Confidence 578999999996 7899999999999999988 556 35555555544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=91.28 E-value=0.35 Score=39.77 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCeEEEEc-CCHHHHHHHHHHH-HCCCEEEEEe
Q psy14499 58 NSKISIQG-FGNVGSVAANLFF-KAGAKIVAIQ 88 (262)
Q Consensus 58 ~~~v~IqG-fG~VG~~~a~~L~-~~g~~vv~V~ 88 (262)
-++|+|.| .|.+|+++++.|. +.|++|+++.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~ 37 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYG 37 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEe
Confidence 35699999 5999999999999 8999998554
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.19 Score=48.16 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEE
Q psy14499 55 NIIN-SKISIQGFGNVGSVAANLFFKA------GAKIV 85 (262)
Q Consensus 55 ~l~~-~~v~IqGfG~VG~~~a~~L~~~------g~~vv 85 (262)
.++| ++|+|+|+|++|.++|+.|.+. |..|+
T Consensus 50 ~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~Vi 87 (525)
T 3fr7_A 50 AFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 87 (525)
T ss_dssp HTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred HhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEE
Confidence 3678 9999999999999999999998 99877
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.57 Score=39.22 Aligned_cols=34 Identities=18% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+.+
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 41 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILI 41 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999986 899999999999999998844
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=0.41 Score=38.41 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++|+|.|. |.+|+++++.|.+.|++|+++..
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r 35 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR 35 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence 3479999997 99999999999999999986653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.44 Score=40.02 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=37.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.++++++|+|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..++
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 57 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVI-ISG----------SNEEKLKSLGNA 57 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEc----------CCHHHHHHHHHH
Confidence 4679999999996 8899999999999999988 555 355666555543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.03 E-value=0.43 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 41 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVA-VAG 41 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 678999999985 8899999999999999988 555
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.27 Score=42.05 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++|+|.|.|.+|+++++.|.+.|++|++++.
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r 36 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSR 36 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEES
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEc
Confidence 347999999999999999999999999997654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.49 Score=40.90 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=48.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcc-------
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKE------- 129 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~------- 129 (262)
.++|+|.|. +.+|+++|+.|.+.|++|+ ++| .|.+++.+..++.+.+..+.. .+++.++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~-~~~----------~~~~~~~~~~~~~~~~~~~~~--Dv~~~~~v~~~v~~ 68 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVC-FID----------IDEKRSADFAKERPNLFYFHG--DVADPLTLKKFVEY 68 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHTTCTTEEEEEC--CTTSHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHhcCCEEEEEe--cCCCHHHHHHHHHH
Confidence 478999985 6799999999999999988 777 577777776665443322210 0111111
Q ss_pred ccc--cCceEEeeCCc
Q psy14499 130 FWS--IPCDILIPAAI 143 (262)
Q Consensus 130 il~--~~~DIlipaa~ 143 (262)
+.+ -..||||.+|.
T Consensus 69 ~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 69 AMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHSCCCEEEECCC
T ss_pred HHHHcCCCCEEEECCC
Confidence 121 36899999885
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.18 Score=45.57 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=28.2
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++.++|+|+|.|.||..++..|...|. .++ +.|
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~-L~D 38 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVV-LFD 38 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEE-EEC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEE-EEe
Confidence 466799999999999999999999887 655 777
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.13 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..+|+|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 39 ~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~ 72 (434)
T 1tt5_B 39 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 72 (434)
T ss_dssp HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEEC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5789999999999999999999999876778874
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.19 Score=45.78 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.+++.+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3689999999999999999999999998777798853
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=90.92 E-value=0.9 Score=43.00 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~~g~~vv~V~D~ 90 (262)
+.++|.|+|.|..|.+ +|++|.+.|++|. ++|.
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~-~~D~ 54 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQIS-GSDL 54 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEE-EECS
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEE-EEEC
Confidence 4579999999999996 8999999999988 8885
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.36 Score=41.92 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=32.3
Q ss_pred hCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 52 INLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 52 ~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
|..+|+|+.++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 1 M~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv-~~~ 38 (258)
T 4gkb_A 1 MDLNLQDKVVIVTGGASGIGGAISMRLAEERAIPV-VFA 38 (258)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEE
Confidence 346899999999997 6699999999999999998 555
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.89 E-value=0.5 Score=40.02 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~ 37 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVA-FSD 37 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 578899999986 8899999999999999988 556
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.59 Score=39.68 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 43 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVA-IAD 43 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 8899999999999999988 555
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.48 Score=40.40 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~-~~~ 60 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVV-LTA 60 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEE
Confidence 578999999996 8899999999999999988 555
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.46 Score=40.74 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~ 51 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLV-LSG 51 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 7899999999999999988 555
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=90.87 E-value=0.51 Score=39.98 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~-~~~ 40 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVI-GTA 40 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 678999999996 7899999999999999998 555
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.62 Score=41.38 Aligned_cols=30 Identities=37% Similarity=0.463 Sum_probs=26.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++|+|+|.|.||..++..|...|. . +.+.|
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~-v~L~D 33 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGD-IVLLD 33 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE-EEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCe-EEEEe
Confidence 589999999999999999999886 7 55778
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.21 Score=47.89 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=60.3
Q ss_pred HhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 51 KINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 51 ~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
.++......+++|+|+|.+|+.+++.|.+.|..++ +.|.+ ++.+.+.. ..+.+ +++ ..+.
T Consensus 341 ~~~~~~~~~~viIiG~G~~G~~la~~L~~~g~~v~-vid~d----------~~~~~~~~---~~i~g--D~t----~~~~ 400 (565)
T 4gx0_A 341 LIGEAPEDELIFIIGHGRIGCAAAAFLDRKPVPFI-LIDRQ----------ESPVCNDH---VVVYG--DAT----VGQT 400 (565)
T ss_dssp ------CCCCEEEECCSHHHHHHHHHHHHTTCCEE-EEESS----------CCSSCCSS---CEEES--CSS----SSTH
T ss_pred HhcCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEE-EEECC----------hHHHhhcC---CEEEe--CCC----CHHH
Confidence 34443333899999999999999999999999998 66632 11110000 00000 111 1222
Q ss_pred c-c---cCceEEeeCCccCc---ccccchhccCc--eEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 131 W-S---IPCDILIPAAIEDQ---ITINNANNVTA--KIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 131 l-~---~~~DIlipaa~~~~---it~e~a~~~~~--kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
| + .++|.+|-++..+. +..-.++++.. ++|+-. |.+- -.+.|++-|+.
T Consensus 401 L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~iiar~-~~~~---~~~~l~~~G~d 457 (565)
T 4gx0_A 401 LRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIVARA-NGEE---NVDQLYAAGAD 457 (565)
T ss_dssp HHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE-SSTT---SHHHHHHHTCS
T ss_pred HHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEEEEE-CCHH---HHHHHHHcCCC
Confidence 2 1 48999999887643 33345666644 555555 4333 34556777764
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.62 Score=39.15 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~-~~~ 44 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVI-IAD 44 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999986 8999999999999999988 444
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=0.61 Score=39.38 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~-~~~ 38 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVA-IAA 38 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 578899999986 8899999999999999988 555
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.37 Score=41.80 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=27.2
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..++++++++|.|. |.+|+++|+.|.+.|++|+ ++|
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~-~~~ 64 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVV-ITG 64 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 34789999999996 7899999999999999988 555
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.63 Score=39.52 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~ 40 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVY-TCS 40 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999995 8899999999999999988 445
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.75 E-value=0.62 Score=39.72 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 44 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLS-LVD 44 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999985 8899999999999999988 455
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.74 E-value=0.66 Score=39.12 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~ 36 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLV-ACD 36 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999996 8899999999999999988 445
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.58 Score=40.94 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~-~~~ 62 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLV-LSD 62 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 578999999996 7899999999999999988 555
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.68 Score=39.95 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~-~~~ 60 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVF-ICA 60 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999996 8899999999999999988 556
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.67 E-value=1.2 Score=39.39 Aligned_cols=120 Identities=18% Similarity=0.076 Sum_probs=63.7
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc-c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW-S 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il-~ 132 (262)
..+.+|+|+|.|.||..+++++...|++++.++| .+.+++... ++.|. +-++.+....+...++- .
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~----------~~~~k~~~a-~~lGa~~~i~~~~~~~~~~~~~~~~~ 227 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID----------ISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLREL 227 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE----------SCHHHHHHH-HHTTCSEEEETTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEe----------chHHHHHHH-HHcCCeEEEeCCCCCHHHHHHhhccc
Confidence 3788999999999999999999999998765667 355554333 33332 11111110000000011 1
Q ss_pred cCceEEeeCCccCcccccchhcc--CceEEEecCCC-C--CCHHHHHHHHHCCCeEecc
Q psy14499 133 IPCDILIPAAIEDQITINNANNV--TAKIILEGANG-P--TTTEADDILRDKGIILAPD 186 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~-p--~t~ea~~~l~~rgi~~iPD 186 (262)
...|++++|+.....-....+.+ ..+++.-|.-. + +.+..-..+..|++.+..-
T Consensus 228 ~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~ 286 (346)
T 4a2c_A 228 RFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286 (346)
T ss_dssp CSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEEC
T ss_pred CCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEE
Confidence 35799999986332111212222 45555544332 2 2333233345566666543
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.5 Score=41.04 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ ++| .+.+++.+..+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~ 50 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVV-VTA----------RNGNALAELTD 50 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-ECC----------SCHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 578999999996 7899999999999999987 666 35555555544
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=90.64 E-value=0.78 Score=41.49 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=65.9
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCCCceeeCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFG--NVGSVAANLFFKAGAKIVAIQDDKTTIYNPN 98 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG--~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~ 98 (262)
++.|+-.||..+.-+--+..=+..+++. .| +++|++|+++|=| +|..+++..+..+|++++ ++- |.
T Consensus 134 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~---~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~-~~~-------P~ 201 (325)
T 1vlv_A 134 SGVPVYNGLTDEFHPTQALADLMTIEEN---FG-RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFV-ACG-------PE 201 (325)
T ss_dssp HCSCEEESCCSSCCHHHHHHHHHHHHHH---HS-CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEE-EES-------CG
T ss_pred CCCCEEeCCCCCCCcHHHHHHHHHHHHH---hC-CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEE-EEC-------Cc
Confidence 4578888888644444444444444443 34 6899999999985 999999999999999987 544 44
Q ss_pred CCCHH-HHHHH----HHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 99 GFNIP-KLQKY----VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 99 GlD~~-~l~~~----~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
|+.++ .+.+. .++.|. ..+..+++++.+ .++||+.--..
T Consensus 202 ~~~p~~~~~~~~~~~a~~~G~-----~v~~~~d~~eav-~~aDvvyt~~w 245 (325)
T 1vlv_A 202 ELKPRSDVFKRCQEIVKETDG-----SVSFTSNLEEAL-AGADVVYTDVW 245 (325)
T ss_dssp GGCCCHHHHHHHHHHHHHHCC-----EEEEESCHHHHH-TTCSEEEECCC
T ss_pred cccCCHHHHHHHHHHHHHcCC-----eEEEEcCHHHHH-ccCCEEEeccc
Confidence 54433 23322 223331 112223345555 48999887554
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.33 Score=41.68 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcC-----------------CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-----------------GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-----------------G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++|++|+|.|- |.+|.++|+.|.+.|++|+-++.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~ 56 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG 56 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEEC
Confidence 578999999998 79999999999999999985543
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.91 Score=40.83 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=66.1
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNG 99 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~G 99 (262)
++.|+-.||..+.-+--+..=+..+++. .| +++|++|+++|= ++|..+++..+..+|++++ ++- |.|
T Consensus 122 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~---~g-~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~-~~~-------P~~ 189 (315)
T 1pvv_A 122 ATVPVINGLSDFSHPCQALADYMTIWEK---KG-TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVV-VAT-------PEG 189 (315)
T ss_dssp CSSCEEEEECSSCCHHHHHHHHHHHHHH---HS-CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEE-EEC-------CTT
T ss_pred CCCCEEcCCCCCCCcHHHHHHHHHHHHH---hC-CcCCcEEEEECCCcchHHHHHHHHHHCCCEEE-EEC-------Ccc
Confidence 4578888887654444444444444443 34 689999999997 8999999999999999987 544 555
Q ss_pred CCHH-HHHHH----HHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 100 FNIP-KLQKY----VTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 100 lD~~-~l~~~----~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
+.++ .+.+. .++.|. ..+..+++++.+ .++||+.--..
T Consensus 190 ~~~~~~~~~~~~~~a~~~g~-----~~~~~~d~~eav-~~aDvvy~~~w 232 (315)
T 1pvv_A 190 YEPDEKVIKWAEQNAAESGG-----SFELLHDPVKAV-KDADVIYTDVW 232 (315)
T ss_dssp CCCCHHHHHHHHHHHHHHTC-----EEEEESCHHHHT-TTCSEEEECCC
T ss_pred ccCCHHHHHHHHHHHHHcCC-----eEEEEeCHHHHh-CCCCEEEEcce
Confidence 5443 23322 223331 112223345555 48999887554
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.35 Score=37.13 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D 89 (262)
+.++++|+|.|..|+.+++.|.+. |++++|+.|
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d 36 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFID 36 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEE
Confidence 457999999999999999999875 899999988
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.61 E-value=0.78 Score=37.14 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=28.0
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V 87 (262)
.+.+|+|.| .|.+|+.+++++...|++|+++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~ 69 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTT 69 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEE
Confidence 688999999 6999999999999999998844
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.60 E-value=0.65 Score=39.84 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.+
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~-~~~ 52 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVV-VAS 52 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 4689999999996 8899999999999999988 445
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.64 Score=41.25 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=25.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA--GAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V~D 89 (262)
++|+|+|.|.+|..++..|.+. |..|+ +.|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~-l~D 32 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELV-LLD 32 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEe
Confidence 4799999999999999999884 67776 667
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=90.55 E-value=0.77 Score=40.99 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+.++|+|+|.|.||..++-.|...+. .++ +.|
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~-L~D 39 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQTANELV-LID 39 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTCSSEEE-EEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEe
Confidence 34789999999999999999988886 666 778
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.65 Score=39.74 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHH-HhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 36 ATGRGVFIIGSKIAS-KINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~-~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+|--|+--+.+++.- ....++++++++|.|. |.+|+++++.|.+.|++|+.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r 61 (271)
T 4iin_A 6 HHSSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR 61 (271)
T ss_dssp ------------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred ccccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 334444455555543 3356889999999996 88999999999999999985543
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.50 E-value=0.36 Score=50.04 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.|+..+|+|+|.|.+|..+++.|...|..-+.+.|.+
T Consensus 24 rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D 60 (1015)
T 3cmm_A 24 KMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPE 60 (1015)
T ss_dssp HHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred HHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCC
Confidence 3688999999999999999999999998777798853
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.46 E-value=0.71 Score=39.51 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~-~~~ 62 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLV-LWD 62 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEE
Confidence 4688999999985 8899999999999999988 445
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.41 E-value=0.49 Score=43.03 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHH--hcCCccCCCCce-ec-CCCc
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVT--FTRSIKDFNEGE-KI-NDSK 128 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~--~~g~~~~~~~~~-~~-~~~~ 128 (262)
+..++|+|+|. |.||+.+|..|...|. .++ +.| +|.+++..... +... |+... .. ++..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiD----------i~~~k~~g~a~DL~~~~---~~~~~i~~t~d~~ 71 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYD----------PFAVGLEGVAEEIRHCG---FEGLNLTFTSDIK 71 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EEC----------SCHHHHHHHHHHHHHHC---CTTCCCEEESCHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEe----------CCchhHHHHHHhhhhCc---CCCCceEEcCCHH
Confidence 46789999997 9999999998888884 555 667 56654432111 1111 22211 11 1122
Q ss_pred cccccCceEEeeCCc
Q psy14499 129 EFWSIPCDILIPAAI 143 (262)
Q Consensus 129 ~il~~~~DIlipaa~ 143 (262)
+.+ .+|||+|-|+.
T Consensus 72 ~al-~dADvVvitaG 85 (343)
T 3fi9_A 72 EAL-TDAKYIVSSGG 85 (343)
T ss_dssp HHH-TTEEEEEECCC
T ss_pred HHh-CCCCEEEEccC
Confidence 233 58999998864
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.16 Score=47.26 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++++++|.|+|.|..|.++|++|.+.|++|+ ++|++
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 37 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMDTR 37 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCE-EEESS
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEE-EEECC
Confidence 3578999999999999999999999999988 78864
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.37 E-value=0.48 Score=40.32 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 43 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVV-VTD 43 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEE-EEE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 4689999999996 7899999999999999988 556
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.6 Score=40.20 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~-~~~ 58 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTV-IAS 58 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEE-EEE
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 478999999996 6899999999999999988 555
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.33 E-value=0.39 Score=40.85 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEcC-CH--HHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GN--VGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~--VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++++++++|.|. |. +|+++|+.|.+.|++|+ +.+
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~-~~~ 40 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLI-FTY 40 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEE-EEE
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEE-Eec
Confidence 4688999999997 55 99999999999999988 444
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.65 Score=39.02 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=27.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+++++|.|. |.+|+++++.|.+.|++|+ ++|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~-~~~ 34 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVS-MMG 34 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 5688999996 7899999999999999988 555
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.22 E-value=1.1 Score=39.89 Aligned_cols=31 Identities=16% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC--CCEEEEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA--GAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~--g~~vv~V 87 (262)
.|.+|+|+|.|.||..+++++... |++|+++
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~ 202 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGI 202 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 789999999999999999999998 9998744
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.61 Score=41.25 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +++
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv-~~~ 39 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVA-IAD 39 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEE-EEE
Confidence 578999999996 8899999999999999988 555
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.6 Score=39.58 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 45 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVV-VSS 45 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 578999999986 8899999999999999988 445
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.61 Score=40.19 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..++++++++|.|. |.+|+++|+.|.+.|++|+ +.|
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~ 59 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVI-GTA 59 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 34688999999986 7899999999999999988 555
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.17 E-value=0.73 Score=39.46 Aligned_cols=46 Identities=26% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.| .+.+++.+..++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~-~~~----------r~~~~~~~~~~~ 49 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLV-AVD----------REERLLAEAVAA 49 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEe----------CCHHHHHHHHHH
Confidence 478899999986 8899999999999999988 545 345555555443
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.41 Score=43.43 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=65.2
Q ss_pred ecccCCCCccCCCCChhHHHHHHHHHHHHHH-hCCCCCCCeEEEEcCC--HHHHHHHHHHHHCCCEEEEEeCCCceeeCC
Q psy14499 21 TGKPISIGGSFGRQKATGRGVFIIGSKIASK-INLNIINSKISIQGFG--NVGSVAANLFFKAGAKIVAIQDDKTTIYNP 97 (262)
Q Consensus 21 tGkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~-~g~~l~~~~v~IqGfG--~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~ 97 (262)
++.|+-.||..+.-+--+..=+..++ ++ .|.+++|++|+++|=| +|..+++..+..+|+.+. ++- |
T Consensus 120 ~~vPVINa~~~~~HPtQ~LaDl~Ti~---e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~-~~~-------P 188 (333)
T 1duv_G 120 ASVPVWNGLTNEFHPTQLLADLLTMQ---EHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLR-LVA-------P 188 (333)
T ss_dssp HSSCEEESCCSSCCHHHHHHHHHHHH---HHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEE-EEC-------C
T ss_pred CCCCeEcCCCCCCCchHHHHHHHHHH---HHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEE-EEC-------C
Confidence 46788888864444333333333333 34 4657899999999986 999999999999999987 544 4
Q ss_pred CCCCHH-HHHH----HHHhcCCccCCCCceecCCCccccccCceEEeeCCc
Q psy14499 98 NGFNIP-KLQK----YVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143 (262)
Q Consensus 98 ~GlD~~-~l~~----~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~ 143 (262)
.|+.++ .+.+ ..++.|. ..+..+++++.+ .++||+.--..
T Consensus 189 ~~~~p~~~~~~~~~~~a~~~G~-----~v~~~~d~~eav-~~aDvvytd~w 233 (333)
T 1duv_G 189 QACWPEAALVTECRALAQQNGG-----NITLTEDVAKGV-EGADFIYTDVW 233 (333)
T ss_dssp GGGCCCHHHHHHHHHHHHHTTC-----EEEEESCHHHHH-TTCSEEEECCS
T ss_pred cccCCCHHHHHHHHHHHHHcCC-----eEEEEECHHHHh-CCCCEEEeCCc
Confidence 444433 2332 2223331 112223344555 48898887544
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=0.37 Score=41.89 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|+
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~-~~~r 43 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVL-TTAR 43 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEE-EEEC
Confidence 789999999996 5699999999999999998 5554
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.62 Score=39.55 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++++|.|. |.+|+++++.|.+.|++|+ +.|
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~-~~~ 36 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVY-ITG 36 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 467899999985 8899999999999999988 555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 262 | ||||
| d1bgva1 | 255 | c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clost | 5e-65 | |
| d1b26a1 | 234 | c.2.1.7 (A:179-412) Glutamate dehydrogenase {Therm | 2e-63 | |
| d1gtma1 | 239 | c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archa | 8e-62 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 5e-60 | |
| d1v9la1 | 242 | c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob | 1e-59 | |
| d1leha1 | 230 | c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu | 4e-52 | |
| d1c1da1 | 201 | c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R | 2e-36 | |
| d1b26a2 | 175 | c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermo | 1e-06 | |
| d1v9la2 | 176 | c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyroba | 3e-06 | |
| d1hwxa2 | 208 | c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (B | 4e-06 | |
| d1gtma2 | 178 | c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archae | 2e-05 | |
| d1bgva2 | 194 | c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostr | 4e-04 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.004 |
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Score = 201 bits (512), Expect = 5e-65
Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 13/253 (5%)
Query: 23 KPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGA 82
K S GGS R +ATG G + N ++ +++ GFGNV AA + GA
Sbjct: 1 KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGA 60
Query: 83 KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-------FNEGEKINDSKEFWSIPC 135
K V + IY+P G + Y+ R+ G + ++ W
Sbjct: 61 KAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKV 120
Query: 136 DILIPAAIEDQITINNANNVTA---KIILEGANGPTTTEADDIL-RDKGIILAPDVITNA 191
DI++P A ++ + + A + A K +E AN PTT EA L + +++AP NA
Sbjct: 121 DIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNA 180
Query: 192 GGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTAAFIIG 249
GGV+VS FE QN L WT +E++ +L+ ++ + D A + +L A I+G
Sbjct: 181 GGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVG 240
Query: 250 CTRVLQAHKTRGL 262
++ A +G+
Sbjct: 241 FQKIADAMMAQGI 253
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 196 bits (499), Expect = 2e-63
Identities = 97/235 (41%), Positives = 148/235 (62%), Gaps = 2/235 (0%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA-GAKIVA 86
GGS GR++ATGRGV + + ++ + +++QGFGNVG AA L + G+K+VA
Sbjct: 1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 60
Query: 87 IQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQ 146
+ D + IYNP GF++ +L +Y ++ + +GE+I ++E + DIL+PAA+E
Sbjct: 61 VSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDILVPAALEGA 119
Query: 147 ITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLS 206
I NA + AK ++EGANGPTT EAD+IL +GI++ PD++ NAGGV VSYFEWVQ+L
Sbjct: 120 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 179
Query: 207 NLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 261
+ W ++ L ++ AF+ + ++ V +RTAA+I+ RV A K RG
Sbjct: 180 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 192 bits (489), Expect = 8e-62
Identities = 101/237 (42%), Positives = 142/237 (59%), Gaps = 3/237 (1%)
Query: 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSK-ISIQGFGNVGSVAA-NLFFKAGAKIV 85
GGS GR +AT RG + A + + + K I+IQG+GN G A + G K+V
Sbjct: 1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVV 60
Query: 86 AIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIED 145
A+ D K IYNP+G N ++ K+ S+KDF I ++E + D+L PAAIE+
Sbjct: 61 AVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDVLAPAAIEE 119
Query: 146 QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQNL 205
IT NA+N+ AKI+ E ANGP T EAD+IL +KGI+ PD + NAGGV VSYFEWVQN+
Sbjct: 120 VITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNI 179
Query: 206 SNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 262
+ WT +E+ RL+ + AF ++ +A K + +R AA+++ RV QA RG
Sbjct: 180 TGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 189 bits (482), Expect = 5e-60
Identities = 81/291 (27%), Positives = 126/291 (43%), Gaps = 62/291 (21%)
Query: 32 GRQKATGRGVFII--------GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAK 83
GR ATGRGVF + + ++QGFGNVG + + GAK
Sbjct: 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAK 61
Query: 84 IVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAI 143
VA+ + +I+NP+G + +L+ + +I F + + + CDILIPAA
Sbjct: 62 CVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG--SILEVDCDILIPAAS 119
Query: 144 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 203
E Q+T +NA V AKII EGANGPTT +AD I ++ I++ PD+ NAGGV VSYF+ ++
Sbjct: 120 EKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILK 179
Query: 204 NLSNLLWTEQE------------------------------------------------- 214
NL+++ +
Sbjct: 180 NLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEKD 239
Query: 215 -INLRLNNIICNAFDAIWELAN--TKKVSLRTAAFIIGCTRVLQAHKTRGL 262
++ L + + I A + LRTAA++ +V + + G+
Sbjct: 240 IVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 187 bits (475), Expect = 1e-59
Identities = 88/239 (36%), Positives = 134/239 (56%), Gaps = 6/239 (2%)
Query: 29 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88
G+ R+ ATG GV + ++A K+ I ++IQG GNVG A K GAK++A+
Sbjct: 2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61
Query: 89 DDKTTIYNPNGFNIPKLQKYVTFTRS-----IKDFNEGEKINDSKEFWSIPCDILIPAAI 143
D Y G N+ +QK T + E + + + + DI +PAAI
Sbjct: 62 DINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI 121
Query: 144 EDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNAGGVIVSYFEWVQ 203
E+ I +NA V A++++EGANGPTT EA+ IL ++G+++ PD++ NAGGVI+SY EWV+
Sbjct: 122 ENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVE 181
Query: 204 NLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRG 261
NL +W E+E RL NI+ N + +++ K ++R AA + R+ A K RG
Sbjct: 182 NLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRG 240
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Score = 167 bits (424), Expect = 4e-52
Identities = 52/244 (21%), Positives = 84/244 (34%), Gaps = 29/244 (11%)
Query: 22 GKPISIGGSFGRQKATGRGVFIIGSKIASKI--NLNIINSKISIQGFGNVGSVAANLFFK 79
G + G S T GV+ A + + ++ +S+QG GNV
Sbjct: 1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNT 60
Query: 80 AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139
GAK+V +K + EG + + CDI
Sbjct: 61 EGAKLVVTDVNKAAVSAAVAE-------------------EGADAVAPNAIYGVTCDIFA 101
Query: 140 PAAIEDQITINNANNVTAKIILEGA-NGPTTTEADDILRDKGIILAPDVITNAGGVIVSY 198
P A+ + + AK+I A N L + GI+ APD + NAGGVI
Sbjct: 102 PCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGGVINVA 161
Query: 199 FEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 258
E + R++ I ++ + I+ ++ V AA + R+ + K
Sbjct: 162 DELYG------YNRTRAMKRVDGIY-DSIEKIFAISKRDGVPSYVAADRMAEERIAKVAK 214
Query: 259 TRGL 262
R
Sbjct: 215 ARSQ 218
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Score = 126 bits (317), Expect = 2e-36
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 28/223 (12%)
Query: 36 ATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94
T GVF + L ++ + +QG G VG A+L +AGA+++ D +
Sbjct: 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV 63
Query: 95 YNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANN 154
+ ++ S PCD+ P A+ IT A
Sbjct: 64 AHAVALGH--------------------TAVALEDVLSTPCDVFAPCAMGGVITTEVART 103
Query: 155 VTAKIILEGANGPTTTE-ADDILRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQ 213
+ ++ AN E A DIL +GI+ APD + NAGG I V W+E
Sbjct: 104 LDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLG-----WSES 158
Query: 214 EINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 256
++ R I + + ++E+++ V+ AA + R +A
Sbjct: 159 VVHERAVAIG-DTLNQVFEISDNDGVTPDEAARTLAGRRAREA 200
|
| >d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Aminoacid dehydrogenases domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 45.7 bits (108), Expect = 1e-06
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISI 27
++W MDTYS +T+ GIVTGKP+ +
Sbjct: 149 IAWYMDTYSMNVGHTVLGIVTGKPVEL 175
|
| >d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Aminoacid dehydrogenases domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 44.1 bits (104), Expect = 3e-06
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTGKPISI 27
M+WM+D YS K Y +PG+ T KP +
Sbjct: 150 MAWMVDEYSKIKGYNVPGVFTSKPPEL 176
|
| >d1hwxa2 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Aminoacid dehydrogenases domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.2 bits (104), Expect = 4e-06
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 1 MSWMMDTYSTKKNY---TIPGIVTGKPISIGG 29
MSW+ DTY++ + VTGKPIS GG
Sbjct: 176 MSWIADTYASTIGHYDINAHACVTGKPISQGG 207
|
| >d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Aminoacid dehydrogenases domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1 MSWMMDTYSTKKNYTIP--GIVTGKPISI 27
M+WMMD Y T P GI+TGKP+SI
Sbjct: 150 MAWMMDEYETISRRKTPAFGIITGKPLSI 178
|
| >d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Aminoacid dehydrogenases domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Score = 38.0 bits (88), Expect = 4e-04
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 1 MSWMMDTYSTKKNYTIPGIVTG 22
+ +M Y G++TG
Sbjct: 173 IGYMYGQYRKIVGGFYNGVLTG 194
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 34.9 bits (79), Expect = 0.004
Identities = 21/123 (17%), Positives = 34/123 (27%)
Query: 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD 117
+ ++ G GN G A G ++A D I + + D
Sbjct: 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPD 60
Query: 118 FNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILR 177
+ K+ I + I + + IIL E ILR
Sbjct: 61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILR 120
Query: 178 DKG 180
+ G
Sbjct: 121 ENG 123
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 262 | |||
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 100.0 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 100.0 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 100.0 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 100.0 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 100.0 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 100.0 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 100.0 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.81 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.66 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.63 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 98.63 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 98.25 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 98.23 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 98.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 98.13 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.12 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.11 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.09 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.05 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.05 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 97.99 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.98 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.95 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.94 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.93 | |
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 97.88 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.87 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 97.85 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 97.85 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.84 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.81 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.81 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.79 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.78 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.76 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.75 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.62 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.56 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.53 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.47 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.45 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.44 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.35 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.35 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 97.34 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.34 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.31 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.26 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.22 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.21 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.14 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.12 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.12 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.05 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.04 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.04 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.98 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.97 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.93 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.9 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.83 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.81 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.79 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 96.68 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.63 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.6 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.47 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.46 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 96.45 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.44 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 96.44 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.37 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.36 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.35 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.29 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.25 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.18 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.13 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.12 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 96.11 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.11 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.1 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.09 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.08 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.07 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.03 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.97 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.97 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.92 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.88 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.83 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.8 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.79 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.73 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.7 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 95.7 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.63 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.53 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.38 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.32 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 95.29 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.24 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.23 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.23 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.17 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.1 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.05 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.05 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.01 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.97 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 94.96 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 94.91 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.89 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 94.89 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 94.86 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.86 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 94.85 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.84 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.79 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.72 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.7 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.7 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.68 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.66 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.64 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 94.59 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.59 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.58 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.56 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.56 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.51 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 94.5 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 94.45 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.44 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.43 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.21 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.09 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 94.09 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.08 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 94.08 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 94.03 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.94 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 93.85 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.85 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.76 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 93.75 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 93.75 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.74 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.74 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.71 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 93.66 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.65 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.65 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.64 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 93.57 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 93.49 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.4 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 93.39 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 93.25 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.25 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 93.14 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 93.13 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.11 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 93.09 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.07 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 93.07 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 93.0 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.0 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.92 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.92 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.88 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 92.86 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 92.78 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.73 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 92.67 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.55 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 92.52 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 92.46 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 92.41 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 92.32 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 92.21 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.16 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.96 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 91.93 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 91.93 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.89 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.81 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.78 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.7 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 91.58 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 91.58 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 91.56 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 91.48 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 91.38 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 91.35 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.29 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 91.18 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 91.18 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.14 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.01 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.97 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.96 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 90.95 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 90.95 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 90.88 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.86 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.68 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 90.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.44 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.33 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.16 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.15 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 90.05 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 89.98 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.97 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 89.95 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.78 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.65 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.59 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 89.56 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 89.53 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.41 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.4 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.25 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 89.24 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.1 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 89.1 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 89.03 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 88.79 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 88.76 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 88.71 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 88.56 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.03 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.99 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.74 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 87.5 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 87.41 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 87.4 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.36 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 87.24 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 87.23 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 87.22 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 87.07 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 86.97 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.9 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 86.88 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 86.58 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.47 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 86.46 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 86.45 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 86.39 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 86.35 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 86.26 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 85.83 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 85.83 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 85.83 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.55 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 85.52 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 85.33 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 85.3 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 85.23 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 85.19 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 85.08 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 84.81 | |
| d2uubk1 | 119 | Ribosomal protein S11 {Thermus thermophilus [TaxId | 84.79 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 84.67 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 84.37 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 84.23 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 84.18 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 84.18 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 84.15 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.07 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 83.73 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 83.72 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.56 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 83.53 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 83.39 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.39 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 83.09 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.05 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 83.0 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 82.92 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 82.75 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 82.47 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 82.27 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.05 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 81.82 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 81.4 | |
| d2qalk1 | 117 | Ribosomal protein S11 {Escherichia coli [TaxId: 56 | 81.13 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.91 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 80.85 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 80.82 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 80.72 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 80.53 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 80.5 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 80.49 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.36 | |
| d1yoba1 | 179 | Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | 80.32 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 80.07 |
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=100.00 E-value=2e-69 Score=479.67 Aligned_cols=239 Identities=29% Similarity=0.479 Sum_probs=223.9
Q ss_pred ccCCCCccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCH
Q psy14499 23 KPISIGGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 102 (262)
Q Consensus 23 kp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~ 102 (262)
||.++|||.+|.++|||||++++++++++++.+|+++||+||||||||++++++|.+.|++||+|+|++|++|||+|||+
T Consensus 1 Kp~~~GGs~gR~eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~ 80 (255)
T d1bgva1 1 KARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITT 80 (255)
T ss_dssp CCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCS
T ss_pred CCccccCCCCCCccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----cCCccCCC---CceecCCCccccccCceEEeeCCccCcccccchhccC---ceEEEecCCCCCCHH
Q psy14499 103 PKLQKYVTF-----TRSIKDFN---EGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT---AKIILEGANGPTTTE 171 (262)
Q Consensus 103 ~~l~~~~~~-----~g~~~~~~---~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~---~kiIve~AN~p~t~e 171 (262)
++++++..+ .+++.+|+ +.+.++ ++++|+.+||||+|||.++.||.+++++++ ||+|+||||+|+||+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e 159 (255)
T d1bgva1 81 EEKINYMLEMRASGRNKVQDYADKFGVQFFP-GEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE 159 (255)
T ss_dssp HHHHHHHHHHHHHCCCCTHHHHHHHTCEEEE-TCCGGGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH
T ss_pred HHHHHHHHHHhhhcCcchhhhhhhcCceeec-hhhcccccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchH
Confidence 999887653 33444442 445666 889999999999999999999999999995 899999999999999
Q ss_pred HHHH-HHHCCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CHHHHHHHH
Q psy14499 172 ADDI-LRDKGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKV--SLRTAAFII 248 (262)
Q Consensus 172 a~~~-l~~rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~--~~r~aa~~~ 248 (262)
|++. |++|||+|+||+++|+|||++|||||+||++++.|++++|.++|+++|.++++++++.++++++ ++|+|||++
T Consensus 160 a~~~ll~~~gI~vvPD~laNaGGVivSy~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~v~~~a~~~~~~~~lr~aA~~~ 239 (255)
T d1bgva1 160 ALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIV 239 (255)
T ss_dssp HHHHHHHCTTCEEECHHHHTTHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHHHHhcCCEEehHhhhcCCceeeehhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9876 5679999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred HHHHHHHHHHHcCC
Q psy14499 249 GCTRVLQAHKTRGL 262 (262)
Q Consensus 249 a~~rv~~a~~~rg~ 262 (262)
|++||+++|+.||+
T Consensus 240 a~~Rva~A~~~rG~ 253 (255)
T d1bgva1 240 GFQKIADAMMAQGI 253 (255)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999999996
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.7e-69 Score=471.48 Aligned_cols=234 Identities=43% Similarity=0.709 Sum_probs=228.7
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKL 105 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l 105 (262)
|||.+|.++|||||+++++++++.+|. +++++||+||||||||+++|++|.+ .|++||+++|++|++|+|+|||++++
T Consensus 1 GGs~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l 80 (239)
T d1gtma1 1 GGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEV 80 (239)
T ss_dssp TCCTTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHH
Confidence 899999999999999999999999987 5999999999999999999999975 69999999999999999999999999
Q ss_pred HHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEec
Q psy14499 106 QKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAP 185 (262)
Q Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iP 185 (262)
++++.+++++.+||+++.++ ++++++.+||||+|||++++||++++++++||+|+|+||+|+||+++++|++|||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~DIl~PcA~~~~I~~~~a~~i~ak~I~e~AN~p~t~ea~~~L~~rgI~~iP 159 (239)
T d1gtma1 81 LKWKNEHGSVKDFPGATNIT-NEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIP 159 (239)
T ss_dssp HHHHHHHSSSTTCTTSEEEC-HHHHHHSCCSEEEECSCSCCBCTTGGGGCCCSEEECCSSSCBCHHHHHHHHHTTCEEEC
T ss_pred HHHHHhccccccCCCCeeec-ccccccccccEEeeccccccccHHHHHhccccEEEecCCCCCCHHHHHHHHHCCCEEec
Confidence 99999999999999999888 88999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 186 DVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 186 D~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
||++|+|||++||+||+||.++.+|++++|.++|+++|.++++++++.+++++++||++||++|++||+++|+.|||
T Consensus 160 D~~aNAGGVi~s~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~Ria~a~~~rG~ 236 (239)
T d1gtma1 160 DFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 236 (239)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred chhhCCcceeEeeeeeccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-68 Score=469.21 Aligned_cols=233 Identities=42% Similarity=0.763 Sum_probs=228.3
Q ss_pred CccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCCceeeCCCCCCHHHHH
Q psy14499 28 GGSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFF-KAGAKIVAIQDDKTTIYNPNGFNIPKLQ 106 (262)
Q Consensus 28 GG~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D~~G~i~~~~GlD~~~l~ 106 (262)
|||.+|.++|||||+++++++++++|.+++++||+||||||||+++|++|. +.|++||+++|++|++|||+|||+.+|.
T Consensus 1 GGs~gR~eATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~ 80 (234)
T d1b26a1 1 GGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELI 80 (234)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHH
T ss_pred CCCCCccchhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHH
Confidence 899999999999999999999999999999999999999999999999996 5799999999999999999999999999
Q ss_pred HHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 107 KYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
+++++++++..+++.+.++ ++++++.+||||+|||.+++||++++++++||+|+|+||+|+||+++++|++|||.|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~~rgI~~~PD 159 (234)
T d1b26a1 81 RYKKEHGTVVTYPKGERIT-NEELLELDVDILVPAALEGAIHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPD 159 (234)
T ss_dssp HHHHHSSCSTTCSSCEEEC-HHHHHTSCCSEEEECSCTTCBCHHHHTTCCCSEEECCSSSCBCHHHHHHHHHTTCEEECH
T ss_pred HHHHhhcceeccccceeec-cccccccccceeecchhcccccHHHHHHhhhceEeecCCCCCCHHHHHHHHHCCeEEech
Confidence 9999999999999998887 888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcC
Q psy14499 187 VITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHKTRG 261 (262)
Q Consensus 187 ~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a~~~rg 261 (262)
|++|+|||++||+||.||.++..|++++|.++|+++|.++++++++.++++++|||+|||++|++||+++|+.||
T Consensus 160 ~~aNaGGVi~s~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ria~a~~~rG 234 (234)
T d1b26a1 160 ILANAGGVTVSYFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 234 (234)
T ss_dssp HHHTTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCCCeeeeehhcccccchhcccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=100.00 E-value=2.6e-67 Score=463.37 Aligned_cols=234 Identities=38% Similarity=0.626 Sum_probs=221.0
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHH
Q psy14499 29 GSFGRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKY 108 (262)
Q Consensus 29 G~~~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~ 108 (262)
||.+|.++|||||++++++++++++.+|+|+||+||||||||+++|++|.+.|++|++|+|++|++|||+|||+++|.++
T Consensus 2 Gs~~r~~ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~ 81 (242)
T d1v9la1 2 GNPVREYATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN 81 (242)
T ss_dssp CCGGGGGHHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred CCCCCcchhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhcCC-----ccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 109 VTFTRS-----IKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 109 ~~~~g~-----~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
++.++. +..+++.+.+++++++++.+||||+|||++++||++++++++||+|+||||+|+||+++++|++|||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~~~~I~~~~a~~i~ak~IvegAN~p~t~~a~~~L~~rgI~~ 161 (242)
T d1v9la1 82 KGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVV 161 (242)
T ss_dssp TTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSCSSCBCTTTTTTCCCSEEECCSSSCBCHHHHHHHHTTTCEE
T ss_pred hhcchhhHHHhhhhccCceEeeCcchhccccccEEeecchhccccHHHHHhcccCEEEecCCCCCChhHHHHHHhCCeEE
Confidence 765542 234566666654678999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 184 APDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT-KKVSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 184 iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~-~~~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
+||+++|+|||++||+||+||.++..|++++|.++|+++|.++++++++.+++ +++++|+|||++|++||+++|+.|||
T Consensus 162 ~PD~~aNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~im~~~~~~v~~~~~~~~~~~~r~aA~~~A~~rva~a~~~rG~ 241 (242)
T d1v9la1 162 VPDILANAGGVIMSYLEWVENLQWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 241 (242)
T ss_dssp ECHHHHSTHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eCchhhcCcchhhhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999975 58999999999999999999999997
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.1e-66 Score=462.50 Aligned_cols=230 Identities=36% Similarity=0.561 Sum_probs=217.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHh------C--CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCH
Q psy14499 31 FGRQKATGRGVFIIGSKIASKI------N--LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI 102 (262)
Q Consensus 31 ~~~~~aTg~Gv~~~~~~~~~~~------g--~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~ 102 (262)
|||.+||||||++++++++++. | .+|+++||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+
T Consensus 1 hGR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~ 80 (293)
T d1hwxa1 1 HGRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDP 80 (293)
T ss_dssp TTHHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCH
T ss_pred CCCchHhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccch
Confidence 5899999999999999998752 3 4799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCe
Q psy14499 103 PKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTEADDILRDKGII 182 (262)
Q Consensus 103 ~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~ 182 (262)
++|.+++.+++++.+|++.. ++ ++++++.+||||+|||.+++||.+++++++||+|+||||+|+||+|+++|.+|||+
T Consensus 81 ~~L~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~DIliPaA~~~~I~~~~a~~l~ak~I~EgAN~P~t~eA~~~L~~~gI~ 158 (293)
T d1hwxa1 81 KELEDFKLQHGTILGFPKAK-IY-EGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPTTPQADKIFLERNIM 158 (293)
T ss_dssp HHHHHHHHTTSSSTTCTTSC-BC-CSCGGGCCCSEEEECSSSSCBCTTTGGGCCCSEEECCSSSCBCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCeecccccc-cC-CcccccCCccEEeeccccccccHHHHHHHhhCEEeccCCCCCCcchHHHHHHCCCE
Confidence 99999999999999887654 45 67899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccchhhHHHHHHHHhhhcCCCCCHH-------------------------------------------------
Q psy14499 183 LAPDVITNAGGVIVSYFEWVQNLSNLLWTEQ------------------------------------------------- 213 (262)
Q Consensus 183 ~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~------------------------------------------------- 213 (262)
|+||+++|+|||++|||||+||+++++|+.+
T Consensus 159 viPD~laNAGGV~vSy~Ew~qn~~~~~w~~~~~~~e~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~k~~~ga~E~ 238 (293)
T d1hwxa1 159 VIPDLYLNAGGVTVSYFQILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGASEK 238 (293)
T ss_dssp EECHHHHTTHHHHHHHHHHHHHHHTSCTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCCCCCCHHHHHHTTCCCHH
T ss_pred EeChhhhcCchHHhHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHhcCCChH
Confidence 9999999999999999999999999999743
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q psy14499 214 -EINLRLNNIICNAFDAIWELANTKK--VSLRTAAFIIGCTRVLQAHKTRGL 262 (262)
Q Consensus 214 -~v~~~l~~~~~~~~~~v~~~a~~~~--~~~r~aa~~~a~~rv~~a~~~rg~ 262 (262)
.|.++|+++|.++++++++.+++++ +|+|+|||++|++||+++|+.||+
T Consensus 239 d~V~~~L~~~M~~a~~~v~~~~~~~~~~~~lR~AAy~~ai~ri~~a~~~rGi 290 (293)
T d1hwxa1 239 DIVHSGLAYTMERSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGV 290 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3888999999999999999999875 799999999999999999999996
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2e-57 Score=396.56 Aligned_cols=215 Identities=24% Similarity=0.349 Sum_probs=198.5
Q ss_pred cccCCCCccCCCCChhHHHHHHHHHHHHHHh-C-CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCC
Q psy14499 22 GKPISIGGSFGRQKATGRGVFIIGSKIASKI-N-LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNG 99 (262)
Q Consensus 22 Gkp~~~GG~~~~~~aTg~Gv~~~~~~~~~~~-g-~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~G 99 (262)
|||.++|||.+|.++|||||+++++++++++ | .+|+|+||+||||||||+++|++|.+.|+++| ++|
T Consensus 1 Gkp~~~GGs~~~~~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv-~~d---------- 69 (230)
T d1leha1 1 GISPAFGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLV-VTD---------- 69 (230)
T ss_dssp SCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------
T ss_pred CCChhhCCCCCCCcchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-eec----------
Confidence 7999999999999999999999999999986 4 58999999999999999999999999999999 566
Q ss_pred CCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCC-CHHHHHHHHH
Q psy14499 100 FNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPT-TTEADDILRD 178 (262)
Q Consensus 100 lD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~-t~ea~~~l~~ 178 (262)
+|...+.++.... +.+.++ ++++++.+||||+|||.+++||++++++++||+|+|+||+|+ +||++++|++
T Consensus 70 ~~~~~~~~~~~~~-------g~~~~~-~~~~~~~~cDIl~PcA~~~~I~~~~~~~l~ak~Ive~ANn~~t~~ea~~~L~~ 141 (230)
T d1leha1 70 VNKAAVSAAVAEE-------GADAVA-PNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHE 141 (230)
T ss_dssp SCHHHHHHHHHHH-------CCEECC-GGGTTTCCCSEEEECSCSCCBSTTHHHHCCCSEECCSCSCCBSSHHHHHHHHH
T ss_pred ccHHHHHHHHHhc-------CCcccC-CcccccccccEecccccccccChHHhhccCccEEEecccCCCCCchHHHHHHh
Confidence 6788877777654 345566 789999999999999999999999999999999999998876 5999999999
Q ss_pred CCCeEeccccccchhhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHH
Q psy14499 179 KGIILAPDVITNAGGVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQAHK 258 (262)
Q Consensus 179 rgi~~iPD~~aN~GGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a~~ 258 (262)
|||+|+|||++|+|||++||+||.+ |+.+++.++++.+ .++++++++.|++++++||+||+++|++||+++|+
T Consensus 142 rGI~~iPD~laNAGGVi~s~~E~~~------~~~~~~~~~l~~I-~~~~~~vl~~a~~~~~~~~~aA~~~A~~ri~~a~~ 214 (230)
T d1leha1 142 LGIVYAPDYVINAGGVINVADELYG------YNRTRAMKRVDGI-YDSIEKIFAISKRDGVPSYVAADRMAEERIAKVAK 214 (230)
T ss_dssp HTCEECCHHHHTTHHHHHHHHGGGC------CCHHHHHHHHTHH-HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCcEEEeehhhcccchhhhhhhhhC------CCHHHHHHHHHHH-HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999954 8999999999876 47799999999999999999999999999999999
Q ss_pred HcCC
Q psy14499 259 TRGL 262 (262)
Q Consensus 259 ~rg~ 262 (262)
.||+
T Consensus 215 ~rg~ 218 (230)
T d1leha1 215 ARSQ 218 (230)
T ss_dssp TTCS
T ss_pred HcCC
Confidence 9995
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=100.00 E-value=1.8e-49 Score=340.13 Aligned_cols=196 Identities=28% Similarity=0.443 Sum_probs=178.1
Q ss_pred ChhHHHHHHHHHHHHHHhCC-CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 35 KATGRGVFIIGSKIASKINL-NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~-~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
-.|||||++++++++++.|. +|+|+||+|||||+||+++|++|.+.|++|+ ++| +|...+......
T Consensus 3 ~~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvv-v~d----------~d~~~~~~~~~~-- 69 (201)
T d1c1da1 3 FTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VAD----------TDTERVAHAVAL-- 69 (201)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT--
T ss_pred CchHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-Eec----------chHHHHHHHHhh--
Confidence 36999999999999999997 7999999999999999999999999999998 888 677777665442
Q ss_pred CccCCCCceecCCCccccccCceEEeeCCccCcccccchhccCceEEEecCCCCCCHH-HHHHHHHCCCeEeccccccch
Q psy14499 114 SIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVTAKIILEGANGPTTTE-ADDILRDKGIILAPDVITNAG 192 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~~kiIve~AN~p~t~e-a~~~l~~rgi~~iPD~~aN~G 192 (262)
+.+.++ ++++++.+||||+||+.++.||.+++++++||+|+|+||+|+|++ ++++|++|||+|+|||++|+|
T Consensus 70 ------g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD~laNAG 142 (201)
T d1c1da1 70 ------GHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAG 142 (201)
T ss_dssp ------TCEECC-GGGGGGCCCSEEEECSCSCCBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHHHTTH
T ss_pred ------cccccC-ccccccccceeeecccccccccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEEehhhhccc
Confidence 345566 788999999999999999999999999999999999999999865 789999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q psy14499 193 GVIVSYFEWVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANTKKVSLRTAAFIIGCTRVLQA 256 (262)
Q Consensus 193 Gvi~s~~E~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~~~~~~r~aa~~~a~~rv~~a 256 (262)
||+.++.+|. ..|+++++.++++++ .+++.++++.|++++++||++|+++|++||++|
T Consensus 143 GVi~~~~~~~-----~~~~~~~v~~~l~~i-~~~~~~i~~~a~~~~~~~~~aA~~~A~~ri~~A 200 (201)
T d1c1da1 143 GAIHLVGREV-----LGWSESVVHERAVAI-GDTLNQVFEISDNDGVTPDEAARTLAGRRAREA 200 (201)
T ss_dssp HHHHHHHHHT-----TCCCHHHHHHHHHTH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHH-----cCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence 9998777764 569999999999975 577999999999999999999999999999875
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.4e-08 Score=80.62 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc
Q psy14499 36 ATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI 115 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~ 115 (262)
.||.+.+ +.+++..+..+.|++|+|+|||.||+.+|+.|+.+|++|+ |+| +||.+.++....
T Consensus 5 g~g~S~~---~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~-v~e----------~dp~~al~A~~d---- 66 (163)
T d1li4a1 5 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVI-ITE----------IDPINALQAAME---- 66 (163)
T ss_dssp HHHHHHH---HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT----
T ss_pred cchhhHH---HHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeE-eee----------cccchhHHhhcC----
Confidence 4555544 3445566899999999999999999999999999999998 989 788665554432
Q ss_pred cCCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEe
Q psy14499 116 KDFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILE 162 (262)
Q Consensus 116 ~~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve 162 (262)
+.++.+ .++.+ ..+|++|-|+.. ++|+.+..+.++-..|+.
T Consensus 67 ----G~~v~~-~~~a~-~~adivvtaTGn~~vI~~eh~~~MKdgaIL~ 108 (163)
T d1li4a1 67 ----GYEVTT-MDEAC-QEGNIFVTTTGCIDIILGRHFEQMKDDAIVC 108 (163)
T ss_dssp ----TCEECC-HHHHT-TTCSEEEECSSCSCSBCHHHHTTCCTTEEEE
T ss_pred ----ceEeee-hhhhh-hhccEEEecCCCccchhHHHHHhccCCeEEE
Confidence 223333 33444 478999999885 899999999997665543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.66 E-value=8.4e-08 Score=77.23 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc
Q psy14499 37 TGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK 116 (262)
Q Consensus 37 Tg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~ 116 (262)
||.+++ +..++..+.-+.|++++|.|||.||+++|+.|+.+|++|+ |++ +||-..++..-+
T Consensus 5 ~g~S~~---d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~-V~E----------~DPi~alqA~md----- 65 (163)
T d1v8ba1 5 CRHSLP---DGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVY-ITE----------IDPICAIQAVME----- 65 (163)
T ss_dssp HHHHHH---HHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEE-EEC----------SCHHHHHHHHTT-----
T ss_pred cchhHH---HHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEE-EEe----------cCchhhHHHHhc-----
Confidence 455554 3344556888999999999999999999999999999998 999 788665554322
Q ss_pred CCCCceecCCCccccccCceEEeeCCcc-CcccccchhccCceEEEec
Q psy14499 117 DFNEGEKINDSKEFWSIPCDILIPAAIE-DQITINNANNVTAKIILEG 163 (262)
Q Consensus 117 ~~~~~~~~~~~~~il~~~~DIlipaa~~-~~it~e~a~~~~~kiIve~ 163 (262)
+.++.+ .++.+ ..+||||-|+.. ++|+.+..++++-..|+.-
T Consensus 66 ---Gf~v~~-~~~a~-~~aDi~vTaTGn~~vI~~~h~~~MKdgaIl~N 108 (163)
T d1v8ba1 66 ---GFNVVT-LDEIV-DKGDFFITCTGNVDVIKLEHLLKMKNNAVVGN 108 (163)
T ss_dssp ---TCEECC-HHHHT-TTCSEEEECCSSSSSBCHHHHTTCCTTCEEEE
T ss_pred ---CCccCc-hhHcc-ccCcEEEEcCCCCccccHHHHHHhhCCeEEEe
Confidence 334444 44555 489999999974 7899999999976644443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.63 E-value=2.5e-06 Score=68.39 Aligned_cols=124 Identities=9% Similarity=0.020 Sum_probs=83.6
Q ss_pred HHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCC
Q psy14499 47 KIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIND 126 (262)
Q Consensus 47 ~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 126 (262)
..++..|.++++++|+|.|.|.++++++-.|.+.|.+|. |.+ -+.++..++.+...... ..+.++
T Consensus 7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~-I~n----------Rt~~ka~~l~~~~~~~~---~~~~~~- 71 (170)
T d1nyta1 7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVT-ITN----------RTVSRAEELAKLFAHTG---SIQALS- 71 (170)
T ss_dssp HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHHTGGGS---SEEECC-
T ss_pred HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEE-ecc----------chHHHHHHHHHHHhhcc---cccccc-
Confidence 345567899999999999999999999999999999855 776 35666655554322111 122233
Q ss_pred CccccccCceEEeeCCccCccccc---chhcc-CceEEEecCCCCCCHHHHHHHHHCCCe-Eec
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITIN---NANNV-TAKIILEGANGPTTTEADDILRDKGII-LAP 185 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e---~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~-~iP 185 (262)
.++....++|++|.|++.+..... +...+ +..+|++..-.|......+..+++|.. +++
T Consensus 72 ~~~~~~~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i~ 135 (170)
T d1nyta1 72 MDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNAD 135 (170)
T ss_dssp SGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEEC
T ss_pred cccccccccceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcccC
Confidence 334444689999999986654322 22223 466899999999733344555888864 553
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.9e-08 Score=81.46 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=42.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKL 105 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l 105 (262)
+..+|+|.|||+||++++++|.+. ..++++++|+++.+++++|+|.+..
T Consensus 3 k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~ 55 (168)
T d1ebfa1 3 KVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVG 55 (168)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCT
T ss_pred CEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhh
Confidence 456899999999999999999874 3699999999999999999987543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=98.25 E-value=3.6e-05 Score=61.29 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce
Q psy14499 43 IIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE 122 (262)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~ 122 (262)
.++...++..+.+ ++++|+|.|.|.++++++..|.+.|++-+.|.++ ++++...+.+..+ ..
T Consensus 3 ~G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR----------~~~ka~~L~~~~~-------~~ 64 (167)
T d1npya1 3 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR----------NVKTGQYLAALYG-------YA 64 (167)
T ss_dssp HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS----------CHHHHHHHHHHHT-------CE
T ss_pred HHHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc----------cHHHHHHHHHhhh-------hh
Confidence 4566788888887 7899999999999999999999999865557763 5666666554432 12
Q ss_pred ecCCCccccccCceEEeeCCccCcccccc-----hhc--c-CceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQITINN-----ANN--V-TAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it~e~-----a~~--~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
.++ .+...++|++|.|++-+...... .+. + +..+|++..-.|.....-+..+++|..++..
T Consensus 65 ~~~---~~~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~G 133 (167)
T d1npya1 65 YIN---SLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISG 133 (167)
T ss_dssp EES---CCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECH
T ss_pred hhh---cccccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCHHHHHHHHCCCeEEEC
Confidence 222 22335899999999855432211 111 2 4669999999987434456668999888743
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=98.23 E-value=7.1e-06 Score=68.93 Aligned_cols=125 Identities=16% Similarity=0.133 Sum_probs=94.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCC---CCCHHHHHHHHHh
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPN---GFNIPKLQKYVTF 111 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~---GlD~~~l~~~~~~ 111 (262)
+.||--+..++.+++|..|++|++.||++.|.|..|.+++++|.+.+.+-+-+.|++|-+++.. .++..+. .+.+
T Consensus 3 QGTaaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~-~~~~- 80 (222)
T d1vl6a1 3 QGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHL-EIAR- 80 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHH-HHHH-
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHH-HHHh-
Confidence 4688899999999999999999999999999999999999999999988887999999999763 3444332 1221
Q ss_pred cCCccCCCCceecCCCccccccCceEEeeCCccCcccccchhccC-ceEEEecCCCC
Q psy14499 112 TRSIKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNVT-AKIILEGANGP 167 (262)
Q Consensus 112 ~g~~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~~-~kiIve~AN~p 167 (262)
..... ....+..+++ .++|+++-.+.++++++|...++. -.+|+.-+|-.
T Consensus 81 ~~~~~-----~~~~~l~~~l-~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNPt 131 (222)
T d1vl6a1 81 ITNPE-----RLSGDLETAL-EGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV 131 (222)
T ss_dssp TSCTT-----CCCSCHHHHH-TTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred hhcch-----hhhcchHhhc-cCcceeccccccccccHHHHhhcCCCCEEEecCCCc
Confidence 11100 0011012334 489999999999999998888874 34999999964
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.20 E-value=1.4e-05 Score=64.10 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=81.3
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc--CCCCcee
Q psy14499 46 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK--DFNEGEK 123 (262)
Q Consensus 46 ~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~--~~~~~~~ 123 (262)
...++..+.++++++|+|.|.|.++++++..|.+.| +|. |.. -++++..++.+...... .+.....
T Consensus 6 ~~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~-I~n----------R~~~ka~~l~~~~~~~~~~~~~~~~~ 73 (177)
T d1nvta1 6 RMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NII-IAN----------RTVEKAEALAKEIAEKLNKKFGEEVK 73 (177)
T ss_dssp HHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEE-EEC----------SSHHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-cee-eeh----------hhhhHHHHHHHHHHHhhchhhhhhhh
Confidence 444445567899999999999999999999997776 554 766 36776655543221100 0000011
Q ss_pred cCCCccccccCceEEeeCCccCcccccc------hhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 124 INDSKEFWSIPCDILIPAAIEDQITINN------ANNV-TAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 124 ~~~~~~il~~~~DIlipaa~~~~it~e~------a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
+.+....+ .++|++|.|++........ ...+ +..++.+....|-.....+..+++|..+++..
T Consensus 74 ~~~~~~~~-~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~~~i~Gl 143 (177)
T d1nvta1 74 FSGLDVDL-DGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGL 143 (177)
T ss_dssp EECTTCCC-TTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTCEEECTH
T ss_pred hhhhhhcc-chhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCCcccCCH
Confidence 11122222 5789999999865432211 1222 46689999999875555566689999998644
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=98.13 E-value=5e-05 Score=60.71 Aligned_cols=158 Identities=12% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC
Q psy14499 46 SKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN 125 (262)
Q Consensus 46 ~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~ 125 (262)
...++..+.++++++|+|.|.|.++++++..|.+.+.+|+ |..+ +.+++..+.+...... ....++
T Consensus 6 ~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~-I~nR----------~~~~a~~l~~~~~~~~---~~~~~~ 71 (171)
T d1p77a1 6 VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIV-LANR----------TFSKTKELAERFQPYG---NIQAVS 71 (171)
T ss_dssp HHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEE-EEES----------SHHHHHHHHHHHGGGS---CEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceee-eccc----------hHHHHHHHHHHHhhcc---ccchhh
Confidence 3445566889999999999999999999999998777766 7663 5666666655432211 222222
Q ss_pred CCccccccCceEEeeCCccCcccccc---hhcc-CceEEEecCC-CCCCHHHHHHHHHCCC-eEeccccccchhhHHHHH
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINN---ANNV-TAKIILEGAN-GPTTTEADDILRDKGI-ILAPDVITNAGGVIVSYF 199 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~---a~~~-~~kiIve~AN-~p~t~ea~~~l~~rgi-~~iPD~~aN~GGvi~s~~ 199 (262)
.++.-..++|++|-|++.+...... ...+ ...++++-.- .|.....-+.-+++|. .+...+--...=.+.++.
T Consensus 72 -~~~~~~~~~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~~Qa~~~f~ 150 (171)
T d1p77a1 72 -MDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLVAQAAHSFH 150 (171)
T ss_dssp -GGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSHHHHHHHHHHHHH
T ss_pred -hccccccccceeeecccccccccccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcccCcHHHHHHHHHHHHH
Confidence 2222236899999999876543321 1112 3567888876 5653333344577887 354222221121233444
Q ss_pred HHHhhhcCCCCCHHHHHHHHHHH
Q psy14499 200 EWVQNLSNLLWTEQEINLRLNNI 222 (262)
Q Consensus 200 E~~~~~~~~~~~~~~v~~~l~~~ 222 (262)
-|- +...+.+.+.+.|++.
T Consensus 151 iwt----g~~~~~~~~~~~l~~~ 169 (171)
T d1p77a1 151 LWR----GVMPDFVSVYEQLKKA 169 (171)
T ss_dssp HHH----SCCCCHHHHHHHHHHH
T ss_pred HHH----CCCCChHHHHHHHHHH
Confidence 453 2333455555555443
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.12 E-value=3e-06 Score=67.11 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=78.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.|+|+|++|+.+|+.|.+.|++|+ +.| .+.+++.++.+... ...+++.++. .+||++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~-~~d----------~~~~~~~~~~~~~~--------~~~~~~~e~~-~~~d~i 60 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VSD----------RNPEAIADVIAAGA--------ETASTAKAIA-EQCDVI 60 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHTTC--------EECSSHHHHH-HHCSEE
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEE-EEe----------CCcchhHHHHHhhh--------hhcccHHHHH-hCCCeE
Confidence 579999999999999999999999987 778 67888777766432 2223234444 589999
Q ss_pred eeCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 139 IPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 139 ipaa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+-|=+......+ ....+ +-++|++..+... +.+..+.++++|+.++.-.+. ||..
T Consensus 61 i~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~--gg~~ 125 (161)
T d1vpda2 61 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVS--GGEP 125 (161)
T ss_dssp EECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEE--SHHH
T ss_pred EEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceeccccc--CChh
Confidence 988653221111 12222 4568888877643 355668889999999865553 5553
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.11 E-value=2.7e-06 Score=68.42 Aligned_cols=122 Identities=17% Similarity=0.177 Sum_probs=79.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc--ccCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW--SIPC 135 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il--~~~~ 135 (262)
..+|.|+|+|++|..+|+.|.+.|++|+ +.| .+++++.++.++........++.. .+++. -.++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~-v~d----------r~~~~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~ 67 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVC-AFN----------RTVSKVDDFLANEAKGTKVLGAHS---LEEMVSKLKKP 67 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSTHHHHHHHHTTTTTSSCEECSS---HHHHHHHBCSS
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEE-EEc----------CCHHHHHHHHHhccccccccchhh---hhhhhhhhccc
Confidence 4689999999999999999999999987 778 688888777664322111111211 12222 2478
Q ss_pred eEEeeCCccCcccccch----hcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 136 DILIPAAIEDQITINNA----NNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 136 DIlipaa~~~~it~e~a----~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
|+++.|-.......+.. ..+ .-++|++..+... +.+..+.+.++|+.++=-.+. ||.-
T Consensus 68 ~~ii~~~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvs--Gg~~ 132 (176)
T d2pgda2 68 RRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS--GGED 132 (176)
T ss_dssp CEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE--SHHH
T ss_pred ceEEEecCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccc--cCcc
Confidence 88888765533222222 222 3568888877654 566778889999999833333 5553
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.09 E-value=7.6e-06 Score=67.24 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.|++|.|+|||++|+.+|++|..+|++|+ ..| |.. +.+. .... +....++.++++
T Consensus 44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~-~~d-------~~~-~~~~-~~~~----------~~~~~~~l~~ll- 102 (193)
T d1mx3a1 44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVL-FYD-------PYL-SDGV-ERAL----------GLQRVSTLQDLL- 102 (193)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC-------TTS-CTTH-HHHH----------TCEECSSHHHHH-
T ss_pred ceeeeCceEEEeccccccccceeeeecccccee-ecc-------Ccc-cccc-hhhh----------ccccccchhhcc-
Confidence 567999999999999999999999999999998 434 321 1111 0100 122222245666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCCe-Eecccc
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII-LAPDVI 188 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi~-~iPD~~ 188 (262)
..||+++.+.+. +.++.+....++ ..+++..+-+++ ..++ .+.|+++-|. +.=|+.
T Consensus 103 ~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~ 167 (193)
T d1mx3a1 103 FHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 167 (193)
T ss_dssp HHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred ccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence 479999766543 666667777774 669999999997 4444 5777776553 344443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=3.8e-05 Score=61.82 Aligned_cols=136 Identities=12% Similarity=0.106 Sum_probs=84.4
Q ss_pred HHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCcee
Q psy14499 45 GSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEK 123 (262)
Q Consensus 45 ~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~ 123 (262)
+..+++..|.++++++|+|.|.|.++++++..|.+.|++-+.|++++ ++ ..+++....++.+. .........
T Consensus 5 f~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~-----~~--~~~~~~~l~~~~~~~~~~~~~~~~ 77 (182)
T d1vi2a1 5 HIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR-----DE--FFDKALAFAQRVNENTDCVVTVTD 77 (182)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS-----ST--THHHHHHHHHHHHHHSSCEEEEEE
T ss_pred HHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc-----hH--HHHHHHHHHHHHHhhcCcceEeee
Confidence 34456677899999999999999999999999999999777787741 21 23444443322110 000000111
Q ss_pred cCCCccccc--cCceEEeeCCccCccc--c----cchhcc-CceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 124 INDSKEFWS--IPCDILIPAAIEDQIT--I----NNANNV-TAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 124 ~~~~~~il~--~~~DIlipaa~~~~it--~----e~a~~~-~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
+.+.+.+.+ .++|++|.|++.+.-. . .+...+ +..++++-.-.|....-.+..+++|..++.-.
T Consensus 78 ~~~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~~~g~~~i~Gl 150 (182)
T d1vi2a1 78 LADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGY 150 (182)
T ss_dssp TTCHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHTTTCEEECHH
T ss_pred cccccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHHHCcCeEeccH
Confidence 111112221 4899999999865432 1 122334 45699999988874344455689999988544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.05 E-value=4.2e-06 Score=69.07 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|.++.|++|.|+|||++|+.+|++|..+|++|+ +.| |. .+... +.. ... .++.++++
T Consensus 38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~-~~d-------~~-~~~~~-----~~~-------~~~-~~~l~~~l- 94 (197)
T d1j4aa1 38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI-TYD-------IF-RNPEL-----EKK-------GYY-VDSLDDLY- 94 (197)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EEC-------SS-CCHHH-----HHT-------TCB-CSCHHHHH-
T ss_pred CccccCCeEEEecccccchhHHHhHhhhccccc-ccC-------cc-ccccc-----ccc-------eee-eccccccc-
Confidence 457899999999999999999999999999998 434 22 12211 111 011 12144566
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHHH-HHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~ea-~~~l~~rgi~ 182 (262)
.++||++-|.+. +.++.+....+ +..+++..+-+++ ..++ .+.|+++-+.
T Consensus 95 ~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 152 (197)
T d1j4aa1 95 KQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 152 (197)
T ss_dssp HHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred cccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccch
Confidence 479999988653 56677777777 4669999999997 4444 5777776553
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=2.6e-06 Score=74.51 Aligned_cols=124 Identities=17% Similarity=0.072 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC-------EEEEEeCCCceeeCCC--CCC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA-------KIVAIQDDKTTIYNPN--GFN 101 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~-------~vv~V~D~~G~i~~~~--GlD 101 (262)
+.||--+..++.+++|..|++|.+.||++.|.|..|.+++++|... |. ++. ++|++|.+++.. .++
T Consensus 2 qGTa~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~-lvD~~Glv~~~r~~~~~ 80 (294)
T d1pj3a1 2 QGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIW-MFDKYGLLVKGRKAKID 80 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEE-EEETTEECBTTCSSCCC
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEE-EEeCCCCccCCCCcccH
Confidence 3689999999999999999999999999999999999999998654 32 355 999999999753 244
Q ss_pred HHHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCCC
Q psy14499 102 IPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANGP 167 (262)
Q Consensus 102 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~p 167 (262)
..+ +.+.+.. +....-+ ..++. .++.|+||-++. ++.+|++.++.+ +-.||+.-+|-.
T Consensus 81 ~~k--~~~a~~~-----~~~~~~~-L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt 144 (294)
T d1pj3a1 81 SYQ--EPFTHSA-----PESIPDT-FEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPT 144 (294)
T ss_dssp TTT--GGGCBCC-----CSSCCSS-HHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred HHH--HHhhccc-----cccchhH-HHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCC
Confidence 322 1111100 0000001 23333 359999999984 689999998765 455999999964
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.98 E-value=8.4e-06 Score=62.26 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=68.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc----ccC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW----SIP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il----~~~ 134 (262)
++|+|+|+|.+|+.+++.|.+.|..|+ |.| .|++.+.++.++.+...-+.++ . ..++| -.+
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~-vid----------~d~~~~~~~~~~~~~~vi~Gd~---~-~~~~l~~~~i~~ 65 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIV-LID----------IDKDICKKASAEIDALVINGDC---T-KIKTLEDAGIED 65 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHCSSEEEESCT---T-SHHHHHHTTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcc-eec----------CChhhhhhhhhhhhhhhccCcc---c-chhhhhhcChhh
Confidence 589999999999999999999999998 778 6888887776653210000011 1 11222 147
Q ss_pred ceEEeeCCccC---cccccchhccCceEEEecCCCCCCHHHHHHHHHCCC
Q psy14499 135 CDILIPAAIED---QITINNANNVTAKIILEGANGPTTTEADDILRDKGI 181 (262)
Q Consensus 135 ~DIlipaa~~~---~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi 181 (262)
+|.++-++..+ .+....++++..+-++.-+|. ++-.+.|++-|+
T Consensus 66 a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~---~~~~~~l~~~G~ 112 (132)
T d1lssa_ 66 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISE---IEYKDVFERLGV 112 (132)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSS---TTHHHHHHHTTC
T ss_pred hhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecC---HHHHHHHHHCCC
Confidence 89999988763 333444556654434444443 344567888888
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.98 E-value=8.7e-06 Score=67.10 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.+++|.|+|+|++|+.++++|..+|++|+ +.|... .+ . ........+ .++++
T Consensus 40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~-~~d~~~-------~~-----------~---~~~~~~~~~-l~~l~- 95 (199)
T d1dxya1 40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI-AYDPYP-------MK-----------G---DHPDFDYVS-LEDLF- 95 (199)
T ss_dssp CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSC-------CS-----------S---CCTTCEECC-HHHHH-
T ss_pred cccccceeeeeeecccccccccccccccceeee-ccCCcc-------ch-----------h---hhcchhHHH-HHHHH-
Confidence 567899999999999999999999999999998 444311 00 0 000111222 44555
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHHH-HHHHHHCCC
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGI 181 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~ea-~~~l~~rgi 181 (262)
..||+++.+.+. +.++.+....+ +..+++..+-+.+ ..++ .+.|++.-|
T Consensus 96 ~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i 152 (199)
T d1dxya1 96 KQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 152 (199)
T ss_dssp HHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE
T ss_pred HhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc
Confidence 478888877543 56777777777 4669999999997 4444 466655543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.95 E-value=2e-05 Score=62.11 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=59.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
+||.|+|+|++|+.+|+.|.+.|++|+ +.| .|.+.+.+.++. +.+. ...+ ..+.+ .+||++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~-~~d----------~~~~~~~~a~~~-~~~~-----~~~~-~~~~~-~~~DiI 61 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLI-GVS----------RQQSTCEKAVER-QLVD-----EAGQ-DLSLL-QTAKII 61 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHT-TSCS-----EEES-CGGGG-TTCSEE
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEE-EEE----------CCchHHHHHHHh-hccc-----eeee-ecccc-cccccc
Confidence 589999999999999999999999988 557 566666655543 2221 1122 22333 589999
Q ss_pred eeCCccCccc---ccchhcc-CceEEEecCCCC
Q psy14499 139 IPAAIEDQIT---INNANNV-TAKIILEGANGP 167 (262)
Q Consensus 139 ipaa~~~~it---~e~a~~~-~~kiIve~AN~p 167 (262)
|.|.+...+. .+..+.+ +..+|+..++..
T Consensus 62 ilavp~~~~~~vl~~l~~~l~~~~iv~~~~s~~ 94 (165)
T d2f1ka2 62 FLCTPIQLILPTLEKLIPHLSPTAIVTDVASVK 94 (165)
T ss_dssp EECSCHHHHHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred cccCcHhhhhhhhhhhhhhcccccceeeccccc
Confidence 9998754321 1223333 345777776654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.94 E-value=1.8e-05 Score=62.57 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=77.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
++|.++|+|++|+.+|+.|.+.|+.|. +.| .+.++......... ....++.+.. ..+|++
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~-~~d----------~~~~~~~~~~~~~~--------~~~~~~~e~~-~~~dii 61 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLN-VFD----------LVQSAVDGLVAAGA--------SAARSARDAV-QGADVV 61 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SSHHHHHHHHHTTC--------EECSSHHHHH-TSCSEE
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEE-EEE----------Cchhhhhhhhhhhc--------cccchhhhhc-cccCee
Confidence 479999999999999999999999977 777 67777666554421 1112133444 578998
Q ss_pred eeCCccCccccc-------chhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 139 IPAAIEDQITIN-------NANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 139 ipaa~~~~it~e-------~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
+-|=+......+ ....+ +-++|++..+... +.+..+.++++|+.++--.+. ||..
T Consensus 62 i~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~--Gg~~ 126 (162)
T d3cuma2 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVS--GGTA 126 (162)
T ss_dssp EECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE--SCHH
T ss_pred eecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccc--cCcc
Confidence 887654321111 12223 4679998888753 567788999999999844433 5553
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.93 E-value=4.6e-05 Score=60.42 Aligned_cols=109 Identities=14% Similarity=0.262 Sum_probs=73.5
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee
Q psy14499 44 IGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK 123 (262)
Q Consensus 44 ~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~ 123 (262)
+++.+.+.++ ++++++|+|+|.|.+|+.+++.|...|++-+.|+.+ +.++..++.++.+ .+.
T Consensus 11 Av~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR----------t~~ka~~l~~~~~-------~~~ 72 (159)
T d1gpja2 11 AVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR----------TYERAVELARDLG-------GEA 72 (159)
T ss_dssp HHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS----------SHHHHHHHHHHHT-------CEE
T ss_pred HHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC----------cHHHHHHHHHhhh-------ccc
Confidence 4454445555 789999999999999999999999999976658763 4566666655532 222
Q ss_pred cCCCccccc--cCceEEeeCCcc--Ccccccchhcc-------CceEEEecCCCC-CCHH
Q psy14499 124 INDSKEFWS--IPCDILIPAAIE--DQITINNANNV-------TAKIILEGANGP-TTTE 171 (262)
Q Consensus 124 ~~~~~~il~--~~~DIlipaa~~--~~it~e~a~~~-------~~kiIve~AN~p-~t~e 171 (262)
.+ .+++.+ .++||+|-|+.. .+++.+..++. +-.+|++-+..+ +.|+
T Consensus 73 ~~-~~~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~ 131 (159)
T d1gpja2 73 VR-FDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEG 131 (159)
T ss_dssp CC-GGGHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTT
T ss_pred cc-chhHHHHhccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcChh
Confidence 22 233332 489999999864 57888776543 123788876443 3444
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=97.88 E-value=3.5e-06 Score=73.74 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----C------CEEEEEeCCCceeeCCC-CCCHH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----G------AKIVAIQDDKTTIYNPN-GFNIP 103 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g------~~vv~V~D~~G~i~~~~-GlD~~ 103 (262)
+.||--+..++.+++|..|++|++.||+|.|.|..|.+++++|... | .+-+-++|++|.|++.. .++..
T Consensus 2 QGTaaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~ 81 (298)
T d1gq2a1 2 QGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPE 81 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTT
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHH
Confidence 4689999999999999999999999999999999999999998743 3 23334999999999764 34321
Q ss_pred HHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCCCC--CHHHHHH
Q psy14499 104 KLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANGPT--TTEADDI 175 (262)
Q Consensus 104 ~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~p~--t~ea~~~ 175 (262)
+...- . ......+..++. ..+.++|+-++. ++.+|++.++.+ +-.||+.-+|-.. .+.+++.
T Consensus 82 -----k~~~a---~--~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a 151 (298)
T d1gq2a1 82 -----KEHFA---H--EHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQL 151 (298)
T ss_dssp -----GGGGC---B--SCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHH
T ss_pred -----HHHHH---H--HhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHH
Confidence 11110 0 000111123333 367889999876 899999988755 3459999999742 3444455
Q ss_pred HH
Q psy14499 176 LR 177 (262)
Q Consensus 176 l~ 177 (262)
++
T Consensus 152 ~~ 153 (298)
T d1gq2a1 152 YK 153 (298)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.87 E-value=4.7e-05 Score=61.70 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
.+.|++|.|+|+|.+|+.+++++..+|++|. +.|..- -+ + .....++.++++ .+
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~-~~d~~~-------~~-----------~------~~~~~~~l~ell-~~ 92 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVR-GFSRTP-------KE-----------G------PWRFTNSLEEAL-RE 92 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEE-EECSSC-------CC-----------S------SSCCBSCSHHHH-TT
T ss_pred cccCceEEEeccccccccceeeeeccccccc-cccccc-------cc-----------c------ceeeeechhhhh-hc
Confidence 3799999999999999999999999999988 545311 00 0 011122255666 59
Q ss_pred ceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCCe-Eecccc
Q psy14499 135 CDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII-LAPDVI 188 (262)
Q Consensus 135 ~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi~-~iPD~~ 188 (262)
|||++-+.+. +.++.+....++ --+++..+-+++ ..++ .+.|+++-+. +.-|++
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence 9999987654 677777777774 558889998886 4444 5788877654 444543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.85 E-value=2.4e-05 Score=62.42 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--cCce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--IPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~~~D 136 (262)
++|.|+|+|++|..+|+.|.+.|+.|. +.| .+.++..++.++.......+..+...+.+.+.. .+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~-~~d----------r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVA-VFN----------RTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPR 70 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSC
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEE-EEE----------CCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccce
Confidence 579999999999999999999999987 777 688888888777654433222222221122221 2344
Q ss_pred EEeeCCccCcccc----cchhcc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccc
Q psy14499 137 ILIPAAIEDQITI----NNANNV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVIT 189 (262)
Q Consensus 137 Ilipaa~~~~it~----e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~a 189 (262)
+.+.+-....... +....+ .-+++++...... +.+..+.|.++++.++-..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~ 130 (178)
T d1pgja2 71 KALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS 130 (178)
T ss_dssp EEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred EEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEeccccc
Confidence 4444433222111 112222 4557777766644 456678889999999865554
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=97.85 E-value=4.3e-06 Score=73.38 Aligned_cols=132 Identities=15% Similarity=0.106 Sum_probs=93.4
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHC----CC-------EEEEEeCCCceeeCCC-CCCH
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFKA----GA-------KIVAIQDDKTTIYNPN-GFNI 102 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~----g~-------~vv~V~D~~G~i~~~~-GlD~ 102 (262)
+.||--+..++.+++|..|++|.+.||+|.|.|..|.+++++|... |. ++. ++|++|.+++.. .++.
T Consensus 2 QGTa~V~lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~-~vD~~Glv~~~r~d~~~ 80 (308)
T d1o0sa1 2 QGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIY-LMDIDGLVTKNRKEMNP 80 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEE-EEETTEECBTTCSSCCG
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEE-EEeCCCCccCCCcccCH
Confidence 4689999999999999999999999999999999999999998763 32 354 999999999764 3543
Q ss_pred HHHHHHHHhcCCccCCCCceecCCCcccc-ccCceEEeeCCc-cCcccccchhcc----CceEEEecCCCCC--CHHHHH
Q psy14499 103 PKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIPCDILIPAAI-EDQITINNANNV----TAKIILEGANGPT--TTEADD 174 (262)
Q Consensus 103 ~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~~DIlipaa~-~~~it~e~a~~~----~~kiIve~AN~p~--t~ea~~ 174 (262)
.+ ...- .+..... +..++. ..+.++||-++. .+..|++.++.+ +-.||+.-+|--. .+.+++
T Consensus 81 ~k-----~~~a--~~~~~~~---~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~ed 150 (308)
T d1o0sa1 81 RH-----VQFA--KDMPETT---SILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEE 150 (308)
T ss_dssp GG-----TTTC--BSSCCCC---CHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHH
T ss_pred HH-----HHHH--HhcccCC---cHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHH
Confidence 22 1110 0000111 122333 468889999985 799999998776 4559999999642 233445
Q ss_pred HHH
Q psy14499 175 ILR 177 (262)
Q Consensus 175 ~l~ 177 (262)
.++
T Consensus 151 a~~ 153 (308)
T d1o0sa1 151 AYT 153 (308)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.84 E-value=5.1e-05 Score=61.98 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.+++++++.|+|+|++|+.+++++..+|.+++ ..| |.--....-. .. .....++.++++
T Consensus 42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~-~~d-------~~~~~~~~~~---~~--------~~~~~~~l~~ll- 101 (191)
T d1gdha1 42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDID-YFD-------THRASSSDEA---SY--------QATFHDSLDSLL- 101 (191)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC-------SSCCCHHHHH---HH--------TCEECSSHHHHH-
T ss_pred cceecccceEEeecccchHHHHHHHHhhccccc-ccc-------ccccccchhh---cc--------cccccCCHHHHH-
Confidence 456789999999999999999999999999988 444 2212222111 11 111122134555
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHHH-HHHHHHCCCe-Eeccc
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGII-LAPDV 187 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~ea-~~~l~~rgi~-~iPD~ 187 (262)
..+|+++.+.+. +.|+.+....+ +.-+++.-+-+++ ..+| .+.|+++-|. ..=|+
T Consensus 102 ~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV 165 (191)
T d1gdha1 102 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165 (191)
T ss_dssp HHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred hhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEEC
Confidence 588999877643 67777777777 4669999999987 5554 5777777664 33344
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=1.5e-05 Score=60.49 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=65.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc---cCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS---IPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~---~~~ 135 (262)
++++|+|+|.+|+.+++.|.+.|..++ |.| .|++.+.++.+..... -+.++ ++++.+.. .+|
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vv-vid----------~d~~~~~~~~~~~~~~-~~gd~---~~~~~l~~a~i~~a 65 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVL-AVD----------INEEKVNAYASYATHA-VIANA---TEENELLSLGIRNF 65 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCE-EEE----------SCHHHHHHTTTTCSEE-EECCT---TCTTHHHHHTGGGC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-Eec----------CcHHHHHHHHHhCCcc-eeeec---ccchhhhccCCccc
Confidence 579999999999999999999999998 777 6888877765432110 01111 11222211 478
Q ss_pred eEEeeCCccCccccc----chhccC-ceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 136 DILIPAAIEDQITIN----NANNVT-AKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 136 DIlipaa~~~~it~e----~a~~~~-~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
|.++-+...+..+-- .++... .++|+-.. +++-.+.|++-|+..
T Consensus 66 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad~ 114 (134)
T d2hmva1 66 EYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQ----NYYHHKVLEKIGADR 114 (134)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----SHHHHHHHHHHTCSE
T ss_pred cEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecc----cHhHHHHHHHCCCCE
Confidence 988877765433221 122233 34554433 356677888888744
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.81 E-value=8.5e-05 Score=58.57 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCcee-------cCCCcccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEK-------INDSKEFW 131 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~-------~~~~~~il 131 (262)
+||+|+|.|++|..+|..|.+.|+.|+ +.| .+.+.+.+..+........++.+. .++..+.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVL-AWD----------IDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh
Confidence 799999999999999999999999987 666 466676666554332222222111 11122333
Q ss_pred ccCceEEeeCCccCcccc---cchhcc-CceEEEecCCCCC-CHHHHHHHHHCCC
Q psy14499 132 SIPCDILIPAAIEDQITI---NNANNV-TAKIILEGANGPT-TTEADDILRDKGI 181 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~---e~a~~~-~~kiIve~AN~p~-t~ea~~~l~~rgi 181 (262)
.++|+++.|...+.... +.++.+ +-.+|+...|.+. +.+..+.+.+++.
T Consensus 71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGA 124 (184)
T ss_dssp -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTC
T ss_pred -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcC
Confidence 58999999987664421 223333 3446666656555 4556677777654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.79 E-value=9.1e-05 Score=60.04 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.+++|.|+|+|++|+.++++|..+|.+|. ..|. ...+....... +.....+.++++
T Consensus 39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~-~~d~-------~~~~~~~~~~~-----------~~~~~~~l~~~l- 98 (188)
T d2naca1 39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLH-YTDR-------HRLPESVEKEL-----------NLTWHATREDMY- 98 (188)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEE-EECS-------SCCCHHHHHHH-----------TCEECSSHHHHG-
T ss_pred ceeccccceeeccccccchhhhhhhhccCceEE-EEee-------ccccccccccc-----------cccccCCHHHHH-
Confidence 557899999999999999999999999999987 4442 22222221111 111122245566
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHHH-HHHHHHCCCe-Eecccc
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGII-LAPDVI 188 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~ea-~~~l~~rgi~-~iPD~~ 188 (262)
.+||+++-+.+. +.++.+....+ +.-+++.-+-+++ .+++ .+.|++.-+. +.=|+.
T Consensus 99 ~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~ 163 (188)
T d2naca1 99 PVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVW 163 (188)
T ss_dssp GGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCC
T ss_pred HhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCC
Confidence 589999876542 67777777777 4569999999997 5554 5666666555 455553
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=6.2e-05 Score=60.99 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.++++.|+|+|++|+.+++++..+|.+|+ ..| |. .+....... +.+..+ .++++
T Consensus 39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~-~~d-------~~-~~~~~~~~~-----------~~~~~~-l~ell- 96 (184)
T d1ygya1 39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVV-AYD-------PY-VSPARAAQL-----------GIELLS-LDDLL- 96 (184)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE-EEC-------TT-SCHHHHHHH-----------TCEECC-HHHHH-
T ss_pred cccccceeeeeccccchhHHHHHHhhhccceEE-eec-------CC-CChhHHhhc-----------Cceecc-HHHHH-
Confidence 456899999999999999999999999999998 433 22 233322111 112222 45666
Q ss_pred cCceEEeeCCcc-----CcccccchhccC-ceEEEecCCCCC-CHHH-HHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNVT-AKIILEGANGPT-TTEA-DDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~~-~kiIve~AN~p~-t~ea-~~~l~~rgi~ 182 (262)
..|||++-+.+. +.++.+....++ .-+++.-+-+++ ..++ .+.|+++-|.
T Consensus 97 ~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~ 154 (184)
T d1ygya1 97 ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVR 154 (184)
T ss_dssp HHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEE
T ss_pred hhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEe
Confidence 479999877553 577777777774 559999999997 4444 5667766554
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.76 E-value=1.8e-05 Score=64.18 Aligned_cols=95 Identities=14% Similarity=0.167 Sum_probs=56.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHH-HHhcCCccCCCCc--------eecCCCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKY-VTFTRSIKDFNEG--------EKINDSK 128 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~-~~~~g~~~~~~~~--------~~~~~~~ 128 (262)
.||+|.|||.+|+.++|.|.+. +..+|+|.|.. +.....+ ......+....+. ..+...-
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~ 71 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS----------PNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTV 71 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS----------CSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCC----------CcHHHHHhcccCcceeccCccceeccccceecCCch
Confidence 3899999999999999999874 68999999842 2221122 2211111111000 0111011
Q ss_pred cccccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 129 EFWSIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 129 ~il~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
..+..++||+++|++. ..+.+++..+ ..|+|+.++
T Consensus 72 ~~~~~~vDiViecTG~-f~~~e~a~~hl~~G~KvIi~~~ 109 (178)
T d1b7go1 72 EDLIKTSDIVVDTTPN-GVGAQYKPIYLQLQRNAIFQGG 109 (178)
T ss_dssp HHHHHHCSEEEECCST-THHHHHHHHHHHTTCEEEECTT
T ss_pred hhhhhcCCEEEECCCC-cCCHHHHHHHHHcCCEEEEECC
Confidence 1223589999999975 4456666654 567777654
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=6.1e-05 Score=61.13 Aligned_cols=106 Identities=14% Similarity=0.269 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++.+++|.|+|||++|+.++++|..+|.+|. ..|.....- ......+.+.++++
T Consensus 39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~-~~d~~~~~~----------------------~~~~~~~~~l~ell- 94 (188)
T d1sc6a1 39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVY-FYDIENKLP----------------------LGNATQVQHLSDLL- 94 (188)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCCCC----------------------CTTCEECSCHHHHH-
T ss_pred cccccceEEEEeecccchhhhhhhcccccceEe-eccccccch----------------------hhhhhhhhhHHHHH-
Confidence 346899999999999999999999999999988 444211000 00111122245566
Q ss_pred cCceEEeeCCcc-----Ccccccchhcc-CceEEEecCCCCC-CHHH-HHHHHHCCCe
Q psy14499 133 IPCDILIPAAIE-----DQITINNANNV-TAKIILEGANGPT-TTEA-DDILRDKGII 182 (262)
Q Consensus 133 ~~~DIlipaa~~-----~~it~e~a~~~-~~kiIve~AN~p~-t~ea-~~~l~~rgi~ 182 (262)
..+||++-+.+. +.++.+....+ +..+++..+-+++ ..++ .+.|+++-+.
T Consensus 95 ~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~ 152 (188)
T d1sc6a1 95 NMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 152 (188)
T ss_dssp HHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred hhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCce
Confidence 478999877543 67888888888 4569999999997 4444 5777776544
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.56 E-value=5.8e-05 Score=60.72 Aligned_cols=97 Identities=18% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC-Cc-cCCCCc------eecCCCc
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR-SI-KDFNEG------EKINDSK 128 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g-~~-~~~~~~------~~~~~~~ 128 (262)
.+||+|.|||.+|+.+++.|.+ ....+|+|.|. ++.....+..+.+ .+ ....+. ..++...
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKT----------KPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAG 71 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEES----------SCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSC
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecC----------CChHHHHHhhhcCceeecccccceeeecccCccccc
Confidence 4799999999999999999876 46899999983 2222222221111 11 000000 0011011
Q ss_pred cc--cccCceEEeeCCccCcccccchhcc---CceEEEecCC
Q psy14499 129 EF--WSIPCDILIPAAIEDQITINNANNV---TAKIILEGAN 165 (262)
Q Consensus 129 ~i--l~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN 165 (262)
.+ +..++||+++||+. ..+.+.+... .+|.|+-++-
T Consensus 72 ~~~~~~~~vDvViEcTG~-f~~~~~~~~hl~~G~k~Vi~s~~ 112 (172)
T d2czca2 72 TLNDLLEKVDIIVDATPG-GIGAKNKPLYEKAGVKAIFQGGE 112 (172)
T ss_dssp BHHHHHTTCSEEEECCST-THHHHHHHHHHHHTCEEEECTTS
T ss_pred hhhhhhccCCEEEECCCC-CCCHHHHHHHHHcCCCEEEECCC
Confidence 12 22489999999964 4466666544 6777776653
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=0.00021 Score=57.03 Aligned_cols=114 Identities=16% Similarity=0.208 Sum_probs=75.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC-CceecCCCcccc-ccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN-EGEKINDSKEFW-SIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~-~~~~~~~~~~il-~~~~ 135 (262)
.||+|+|+|.+|+..++.|... +.++++|+| .|.++..+..++.+ ++ ..+.+++.++++ +.+.
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~ll~~~~i 67 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVAS----------RSLEKAKAFATANN----YPESTKIHGSYESLLEDPEI 67 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEEC----------SSHHHHHHHHHHTT----CCTTCEEESSHHHHHHCTTC
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEe----------CCccccccchhccc----cccceeecCcHHHhhhcccc
Confidence 5899999999999999999875 789999999 68887766655543 22 233444456666 4689
Q ss_pred eEEeeCCccCcccccchhc---cCceEEEecCCCCCCHHHH---HHHHHCCCeEeccc
Q psy14499 136 DILIPAAIEDQITINNANN---VTAKIILEGANGPTTTEAD---DILRDKGIILAPDV 187 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~~---~~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~ 187 (262)
|+++-|++.. .+.+.+.. .+..+++|=.=.....|++ +..+++|+.+...+
T Consensus 68 D~v~I~tp~~-~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~ 124 (184)
T d1ydwa1 68 DALYVPLPTS-LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGT 124 (184)
T ss_dssp CEEEECCCGG-GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECC
T ss_pred ceeeecccch-hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEE
Confidence 9999888754 34444333 3566888853222234443 44466787775444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.47 E-value=8.8e-05 Score=59.45 Aligned_cols=95 Identities=25% Similarity=0.285 Sum_probs=66.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc--c
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS--I 133 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~--~ 133 (262)
.+..+|+|+|.|.+|...++...+.|+.|. +.| .+++++.++....+.-. ...+++.+.+.+ .
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~-~~D----------~~~~~l~~l~~~~~~~~----~~~~~~~~~l~~~~~ 94 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQ-IFD----------INVERLSYLETLFGSRV----ELLYSNSAEIETAVA 94 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHHGGGS----EEEECCHHHHHHHHH
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEE-EEe----------CcHHHHHHHHHhhcccc----eeehhhhhhHHHhhc
Confidence 367899999999999999999999999988 888 78888776655432111 111221112221 5
Q ss_pred CceEEeeCCc------cCcccccchhccC-ceEEEecCC
Q psy14499 134 PCDILIPAAI------EDQITINNANNVT-AKIILEGAN 165 (262)
Q Consensus 134 ~~DIlipaa~------~~~it~e~a~~~~-~kiIve~AN 165 (262)
++|++|-++. +.+||.+...+++ .-+|++-|-
T Consensus 95 ~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai 133 (168)
T d1pjca1 95 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 133 (168)
T ss_dssp TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred cCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence 8999998875 4788888888884 447776543
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=97.45 E-value=0.00039 Score=55.66 Aligned_cols=96 Identities=24% Similarity=0.413 Sum_probs=61.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee--c
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK--I 124 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~--~ 124 (262)
.||.|-|||.+|+.+.|.+.+.+..+|+|-|.. .|++.+.-+.+ -+|.+..- . +... +
T Consensus 1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~--------~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~ 72 (169)
T d1dssg1 1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPF--------IALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITV 72 (169)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTT--------SCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEE
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCC--------cCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEE
Confidence 379999999999999999999999999998842 46666555544 23332210 0 0111 1
Q ss_pred ---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEec
Q psy14499 125 ---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEG 163 (262)
Q Consensus 125 ---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~ 163 (262)
.+++++ | +.++|++++|+. -..|.+.+... .+ |+|+.+
T Consensus 73 ~~~~~p~~i~W~~~gvD~ViEcTG-~f~~~~~~~~hl~~gakkViisa 119 (169)
T d1dssg1 73 FNEMKPENIPWSKAGAEYIVESTG-VFTTIEKASAHFKGGAKKVIISA 119 (169)
T ss_dssp ECCSSGGGCCHHHHTCCEEEECSS-SCCSHHHHGGGGTTTCSEEEESS
T ss_pred EecCChHHCCccccCCCEEEecCc-eEcCHHHHHHHHhcCCceEeecC
Confidence 123443 3 568999999996 44566666654 34 466665
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.44 E-value=0.00021 Score=55.74 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=66.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
+|+.++|+|++|+++++-|.+.|.+++ +++ -+.+++.++.++.+ .....+..++. .++|++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~-v~~----------r~~~~~~~l~~~~g-------~~~~~~~~~~~-~~~dvI 61 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELI-ISG----------SSLERSKEIAEQLA-------LPYAMSHQDLI-DQVDLV 61 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEE-EEC----------SSHHHHHHHHHHHT-------CCBCSSHHHHH-HTCSEE
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEE-EEc----------ChHHhHHhhccccc-------eeeechhhhhh-hcccee
Confidence 579999999999999999999999987 777 36777777766543 11222244555 489999
Q ss_pred eeCCccCcccccchhcc-CceEEEecCCCCCCHHHHHHH
Q psy14499 139 IPAAIEDQITINNANNV-TAKIILEGANGPTTTEADDIL 176 (262)
Q Consensus 139 ipaa~~~~it~e~a~~~-~~kiIve~AN~p~t~ea~~~l 176 (262)
+-|-.++.+ .+..+.+ .-++|+.-+.+....+.++.|
T Consensus 62 ilavkp~~~-~~vl~~l~~~~~iis~~agi~~~~l~~~l 99 (152)
T d2ahra2 62 ILGIKPQLF-ETVLKPLHFKQPIISMAAGISLQRLATFV 99 (152)
T ss_dssp EECSCGGGH-HHHHTTSCCCSCEEECCTTCCHHHHHHHH
T ss_pred eeecchHhH-HHHhhhcccceeEecccccccHHHHHhhh
Confidence 998765543 2334444 345677777655444555555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.35 E-value=0.00016 Score=56.29 Aligned_cols=122 Identities=12% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC-CceecCCCccccccCc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN-EGEKINDSKEFWSIPC 135 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~-~~~~~~~~~~il~~~~ 135 (262)
.+++|+|+|.|.+|+.+|+.|.+.|++|+ |+| -+.+++.++.+......... +.......++.+ ...
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~-v~d----------r~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i-~~~ 68 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVT-VAC----------RTLESAKKLSAGVQHSTPISLDVNDDAALDAEV-AKH 68 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEE-EEE----------SCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHH-TTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEE----------CChHHHHHHHhcccccccccccccchhhhHhhh-hcc
Confidence 36899999999999999999999999977 988 58888877766543221110 000000011122 466
Q ss_pred eEEeeCCccCcccccchh---ccCceEEEecCCCCCCHHHHHHHHHCCCeEeccccccc
Q psy14499 136 DILIPAAIEDQITINNAN---NVTAKIILEGANGPTTTEADDILRDKGIILAPDVITNA 191 (262)
Q Consensus 136 DIlipaa~~~~it~e~a~---~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~~aN~ 191 (262)
|+.+.+.+... +...+. ...+.++-.....+...+..+...+++..++++.....
T Consensus 69 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 126 (182)
T d1e5qa1 69 DLVISLIPYTF-HATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSA 126 (182)
T ss_dssp SEEEECSCGGG-HHHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEECSCBCCH
T ss_pred ceeEeeccchh-hhHHHHHHHhhccceeecccCcHHHHHHHHHhccccceeehhhhcch
Confidence 77776665432 222221 22344443333322223344556778887777666554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.35 E-value=0.00063 Score=52.62 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=69.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC-CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG-AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g-~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
++|.++|+|++|+++++-|.+.| .++. ++| -+.+++.++.++.+ ....++.+++ .++|+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~-v~~----------r~~~~~~~l~~~~~-------~~~~~~~~~v--~~~Di 60 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IAN----------RGAEKRERLEKELG-------VETSATLPEL--HSDDV 60 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEE-EEC----------SSHHHHHHHHHHTC-------CEEESSCCCC--CTTSE
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEE-EEe----------CChhHHHHhhhhcc-------cccccccccc--cccce
Confidence 57999999999999999887766 6765 878 57787777766542 2333423333 36999
Q ss_pred EeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHHHHC--CCeEecccc
Q psy14499 138 LIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDILRDK--GIILAPDVI 188 (262)
Q Consensus 138 lipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l~~r--gi~~iPD~~ 188 (262)
++.|-.+..+. +..+.+ ..++|+.-+.+.......+.|... =+..+|..-
T Consensus 61 v~lavkP~~~~-~v~~~l~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p 114 (152)
T d1yqga2 61 LILAVKPQDME-AACKNIRTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTP 114 (152)
T ss_dssp EEECSCHHHHH-HHHTTCCCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGG
T ss_pred EEEecCHHHHH-HhHHHHhhcccEEeecccCCCHHHHHHHhCcCcceEeecccch
Confidence 99987553221 223333 356888888776666655665322 244555543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=97.34 E-value=0.00047 Score=55.42 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHHHHHHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc---CCccCCC
Q psy14499 44 IGSKIASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT---RSIKDFN 119 (262)
Q Consensus 44 ~~~~~~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~---g~~~~~~ 119 (262)
.+..+.+..|.+|++++++|.| .|.+|+.+++.|.+.|++|+ +++ .+.+++.+..++. ..+.-.
T Consensus 9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~-~~~----------r~~~~~~~~~~~~~~~~~~~~~- 76 (191)
T d1luaa1 9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVV-LCG----------RKLDKAQAAADSVNKRFKVNVT- 76 (191)
T ss_dssp HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SSHHHHHHHHHHHHHHHTCCCE-
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchh-hcc----------cchHHHHHHHHHHHhccchhhh-
Confidence 4556778889999999999999 59999999999999999988 666 4666665554422 111100
Q ss_pred CceecCCCcccc--ccCceEEeeCCcc--Ccccccchhcc
Q psy14499 120 EGEKINDSKEFW--SIPCDILIPAAIE--DQITINNANNV 155 (262)
Q Consensus 120 ~~~~~~~~~~il--~~~~DIlipaa~~--~~it~e~a~~~ 155 (262)
...+.+.+++- -.++||||.|+.. ..++.+..+..
T Consensus 77 -~~d~~~~~~~~~~~~~iDilin~Ag~g~~~~~~e~~~~~ 115 (191)
T d1luaa1 77 -AAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNE 115 (191)
T ss_dssp -EEECCSHHHHHHHTTTCSEEEECCCTTCCCBCHHHHHTC
T ss_pred -hhhcccHHHHHHHhcCcCeeeecCccccccCCHHHHHhh
Confidence 00111112221 1478999999763 34455555544
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.34 E-value=8.6e-05 Score=57.72 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=59.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDIL 138 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIl 138 (262)
+||.|+|+|++|+.+|+.|.+.|+.++ +.|. +..+..+.+.+...+ ..+..++. .+||++
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~-~~~~----------~~~~~~~~~~~~~~~--------~~~~~e~~-~~~diI 60 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVV-TSLE----------GRSPSTIERARTVGV--------TETSEEDV-YSCPVV 60 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEE-ECCT----------TCCHHHHHHHHHHTC--------EECCHHHH-HTSSEE
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEE-EEcC----------chhHHHHHhhhcccc--------cccHHHHH-hhcCeE
Confidence 589999999999999999999999987 5542 222222223221111 11244554 589999
Q ss_pred eeCCccCcccccchhcc---CceEEEecCCCCC--CHHHHHHHHHCC
Q psy14499 139 IPAAIEDQITINNANNV---TAKIILEGANGPT--TTEADDILRDKG 180 (262)
Q Consensus 139 ipaa~~~~it~e~a~~~---~~kiIve~AN~p~--t~ea~~~l~~rg 180 (262)
+-|-+.+.. .+.+.+. .-+++++.++... +.+..+.+++++
T Consensus 61 i~~v~~~~~-~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 61 ISAVTPGVA-LGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGG 106 (152)
T ss_dssp EECSCGGGH-HHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred EEEecCchH-HHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhccC
Confidence 998775433 2222222 2457777655432 233444444444
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=97.31 E-value=7.4e-05 Score=60.03 Aligned_cols=32 Identities=22% Similarity=0.543 Sum_probs=28.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~ 90 (262)
++|+|.|||.+|+.++|.|.+. ...+|+|.|.
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~ 34 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKT 34 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEES
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecC
Confidence 4899999999999999998765 5899999983
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00012 Score=52.35 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++++|+|.|+|.-|+++|++|.+.|++|. ++|
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~-~~D 35 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPR-VMD 35 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCE-EEE
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEE-Eee
Confidence 5799999999999999999999999999988 777
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.00094 Score=53.04 Aligned_cols=115 Identities=8% Similarity=0.073 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCCHHHHH-HHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 56 IINSKISIQGFGNVGSV-AANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~-~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
|+..||+|+|+|.+|+. .+..|.+.. .++++|+| .|.++..+..++.+. ...+++.+++++
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d----------~~~~~~~~~~~~~~~------~~~~~~~~ell~ 64 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS----------RTRSHAEEFAKMVGN------PAVFDSYEELLE 64 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEEC----------SSHHHHHHHHHHHSS------CEEESCHHHHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEe----------ccHhhhhhhhccccc------cceeeeeecccc
Confidence 45679999999999987 477777643 68999999 577777666655432 122333556664
Q ss_pred -cCceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccc
Q psy14499 133 -IPCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDV 187 (262)
Q Consensus 133 -~~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~ 187 (262)
.+.|+++-|++.+ .+.+.+... +..+++|=.=.....|+. +..+++|+.+...+
T Consensus 65 ~~~id~v~I~tp~~-~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~ 125 (181)
T d1zh8a1 65 SGLVDAVDLTLPVE-LNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAE 125 (181)
T ss_dssp SSCCSEEEECCCGG-GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEEC
T ss_pred ccccceeecccccc-ccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 5799999888654 444544443 455888763222234443 34466787765333
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.21 E-value=0.0013 Score=51.22 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=66.8
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKIND 126 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~ 126 (262)
++..+.. .+.+|+|+|.|.||..++.+++.+|++|+ ++| .+.+++...++-... +...+......+
T Consensus 19 ~~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi-~v~----------~~~~r~~~a~~~ga~~~~~~~~~~~~~~~ 86 (170)
T d1e3ja2 19 CRRAGVQ-LGTTVLVIGAGPIGLVSVLAAKAYGAFVV-CTA----------RSPRRLEVAKNCGADVTLVVDPAKEEESS 86 (170)
T ss_dssp HHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHTTCSEEEECCTTTSCHHH
T ss_pred HHHhCCC-CCCEEEEEcccccchhhHhhHhhhccccc-ccc----------hHHHHHHHHHHcCCcEEEeccccccccch
Confidence 4555544 56799999999999999999999999998 556 466765544442211 100000000000
Q ss_pred C-ccc---cccCceEEeeCCccCc-ccc-cchhccCceEEEecCCC-CCCHHHHHHHHHCCCeEe
Q psy14499 127 S-KEF---WSIPCDILIPAAIEDQ-ITI-NNANNVTAKIILEGANG-PTTTEADDILRDKGIILA 184 (262)
Q Consensus 127 ~-~~i---l~~~~DIlipaa~~~~-it~-e~a~~~~~kiIve~AN~-p~t~ea~~~l~~rgi~~i 184 (262)
. +.+ ....+|++++|+.... ++. -..-+...+++.=|-.. |.+-.. ..+..|++.+.
T Consensus 87 ~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~-~~~~~k~i~i~ 150 (170)
T d1e3ja2 87 IIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPL-VNACAREIDIK 150 (170)
T ss_dssp HHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCH-HHHHTTTCEEE
T ss_pred hhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCH-HHHHHCCCEEE
Confidence 0 011 1246899999986432 221 11222256666655433 222222 23456777664
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.14 E-value=0.00055 Score=53.18 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=67.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEe
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILI 139 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIli 139 (262)
||.++|.|++|..+|+.|.+.|..++ ..| ..++..+..++.+.. .+ ..+.. .++|+++
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~-----------~~~~~~~~~~~~~~~--------~~-~~~~~-~~~~~~i 59 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNR-----------TFEKALRHQEEFGSE--------AV-PLERV-AEARVIF 59 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEE-ECS-----------STHHHHHHHHHHCCE--------EC-CGGGG-GGCSEEE
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEE-EeC-----------CHHHHHHHHHHcCCc--------cc-ccccc-cceeEEE
Confidence 68999999999999999999998764 333 234444544443321 11 22222 3577777
Q ss_pred eCCccCcccccchh----cc-CceEEEecCCCCC--CHHHHHHHHHCCCeEeccccccchhhH
Q psy14499 140 PAAIEDQITINNAN----NV-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITNAGGVI 195 (262)
Q Consensus 140 paa~~~~it~e~a~----~~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN~GGvi 195 (262)
-|-+....-.+... .+ +.+++++.+.... +.+..+.|+++|+.++=-.+. ||..
T Consensus 60 ~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVs--Gg~~ 120 (156)
T d2cvza2 60 TCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS--GGTS 120 (156)
T ss_dssp ECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEE--SHHH
T ss_pred ecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecccc--Cchh
Confidence 66543211111111 11 5667777665543 466778899999999844444 6654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.12 E-value=0.00032 Score=51.82 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
.++++++|+|+|.|++|..-++.|.+.|++|+-++
T Consensus 8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~ 42 (113)
T d1pjqa1 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNA 42 (113)
T ss_dssp ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999999999999998444
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.12 E-value=0.00058 Score=53.93 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
|+..||+|+|+|++|+..++.|.+. ++.+++|+|.+-.. . .. ......+ ..+.+..+
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~------------------~--~~-~~~~~~~-~~~~~~~~ 58 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL------------------D--TK-TPVFDVA-DVDKHADD 58 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC------------------S--SS-SCEEEGG-GGGGTTTT
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc------------------c--cc-cccccch-hhhhhccc
Confidence 4567999999999999999999874 79999999853110 0 00 0112222 12223358
Q ss_pred ceEEeeCCccCcc
Q psy14499 135 CDILIPAAIEDQI 147 (262)
Q Consensus 135 ~DIlipaa~~~~i 147 (262)
+|+++-|++...-
T Consensus 59 ~D~Vvi~tp~~~h 71 (170)
T d1f06a1 59 VDVLFLCMGSATD 71 (170)
T ss_dssp CSEEEECSCTTTH
T ss_pred cceEEEeCCCccc
Confidence 9999999987753
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.05 E-value=0.0025 Score=52.28 Aligned_cols=119 Identities=10% Similarity=0.014 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCHHHH-HHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-cc
Q psy14499 57 INSKISIQGFGNVGS-VAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SI 133 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~-~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~ 133 (262)
+..||+|+|+|+.|+ ..+..|... +.++++|+| .|++++.+..++.+ +.. +....++|.++++ +.
T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d----------~~~~~a~~~~~~~~-i~~-~~~~~~~d~~ell~~~ 99 (221)
T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVS----------GNAEKAKIVAAEYG-VDP-RKIYDYSNFDKIAKDP 99 (221)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEEC----------SCHHHHHHHHHHTT-CCG-GGEECSSSGGGGGGCT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEec----------CCHHHHHHHHHhhc-ccc-ccccccCchhhhcccc
Confidence 568999999999997 566666553 899999999 68888877776643 110 0111223356666 45
Q ss_pred CceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEecccc
Q psy14499 134 PCDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVI 188 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~ 188 (262)
++|+++-|++.. .+.+.+... +-.+++|=.=.....++.++ .+++|+.+...+-
T Consensus 100 ~iD~V~I~tp~~-~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~ 159 (221)
T d1h6da1 100 KIDAVYIILPNS-LHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYR 159 (221)
T ss_dssp TCCEEEECSCGG-GHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred cceeeeeccchh-hhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeec
Confidence 799999888643 444443332 45588886422222334433 3667877754443
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=97.04 E-value=0.0039 Score=49.57 Aligned_cols=96 Identities=20% Similarity=0.395 Sum_probs=58.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~-- 123 (262)
.||+|-|||.+|+.+.|.+.+ ...++++|-|.. .|++.+..+.+ -+|++..- . +...
T Consensus 2 ikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~--------~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~ 73 (169)
T d1u8fo1 2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPF--------IDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPIT 73 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSS--------SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred cEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCC--------ccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEE
Confidence 589999999999999998765 569999998842 36665544443 23333210 0 0111
Q ss_pred c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEec
Q psy14499 124 I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEG 163 (262)
Q Consensus 124 ~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~ 163 (262)
+ .+++++ | +.++|++++|+.. ..|.+.+... .+ |+|+.+
T Consensus 74 ~~~~~~p~~i~W~~~~vDiViEcTG~-f~~~~~~~~hl~~gakkViiSa 121 (169)
T d1u8fo1 74 IFQERDPSKIKWGDAGAEYVVESTGV-FTTMEKAGAHLQGGAKRVIISA 121 (169)
T ss_dssp EECCSSGGGCCTTTTTCCEEEECSSS-CCSHHHHGGGGGGTCSEEEESS
T ss_pred EEECCChhhCCccccCCCEEEEecce-eccHHHHHHHHhcCCceEeecc
Confidence 1 123332 3 5689999999964 4455555443 33 466654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.04 E-value=0.0011 Score=51.58 Aligned_cols=103 Identities=17% Similarity=0.179 Sum_probs=64.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
+|.|+|+|.+|.++|+.|.+.|. +|. ..| .|.+.+...++. +.+. ...++.+.....++|+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~-~~D----------~~~~~~~~a~~~-~~~~-----~~~~~~~~~~~~~~dl 65 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYD----------INPESISKAVDL-GIID-----EGTTSIAKVEDFSPDF 65 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEE-EEC----------SCHHHHHHHHHT-TSCS-----EEESCGGGGGGTCCSE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEE-EEE----------CChHHHHHHHHh-hcch-----hhhhhhhhhhcccccc
Confidence 69999999999999999999885 655 456 577776665553 2221 1122123344468999
Q ss_pred EeeCCccCcccc---cchhcc-CceEEEecCCCCC--CHHHHHHHHHC
Q psy14499 138 LIPAAIEDQITI---NNANNV-TAKIILEGANGPT--TTEADDILRDK 179 (262)
Q Consensus 138 lipaa~~~~it~---e~a~~~-~~kiIve~AN~p~--t~ea~~~l~~r 179 (262)
++.|.+.+.+.. +..+.+ ...+|.+.+.... ..+..+.+.++
T Consensus 66 Iila~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~ 113 (171)
T d2g5ca2 66 VMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR 113 (171)
T ss_dssp EEECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred ccccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccc
Confidence 999998654322 223333 3457877777543 34455555554
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=96.98 E-value=0.0057 Score=48.46 Aligned_cols=94 Identities=23% Similarity=0.361 Sum_probs=59.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-CCC------------cee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-FNE------------GEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-~~~------------~~~-- 123 (262)
+||+|-|||.+|+.+.|.|.+.+..+++|-|. .|++.+.-+.+ +.++-+ |+. .+.
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~---------~~~~~~ayLl~-yDS~hG~~~~~v~~~~~~l~i~g~~I~ 70 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDL---------TDNKTLAHLLK-YDSIYHRFPGEVAYDDQYLYVDGKAIR 70 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECS---------SCHHHHHHHHH-CCTTTCSCSSCEEECSSEEEETTEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEECCC---------cchhhhhheee-cccccCccccccccccceeEecceeEE
Confidence 58999999999999999999999999999883 36665543333 332221 211 111
Q ss_pred c---CCCcc--ccccCceEEeeCCccCcccccchhcc---Cce-EEEec
Q psy14499 124 I---NDSKE--FWSIPCDILIPAAIEDQITINNANNV---TAK-IILEG 163 (262)
Q Consensus 124 ~---~~~~~--il~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~ 163 (262)
+ .++++ |.+.++|++++|+. ...|.+.+... .+| +|+.+
T Consensus 71 ~~~~~~p~~i~W~~~gvdiViEcTG-~f~~~~~~~~hl~~gakkViiSA 118 (168)
T d2g82a1 71 ATAVKDPKEIPWAEAGVGVVIESTG-VFTDADKAKAHLEGGAKKVIITA 118 (168)
T ss_dssp EECCSSGGGCCTGGGTEEEEEECSS-SCCBHHHHTHHHHTTCSEEEESS
T ss_pred EEecCChHHCcccccCCceeEeccc-cccchHHhhhhhccccceeeecc
Confidence 1 12333 33568999999985 44565555554 343 56644
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=96.97 E-value=0.0019 Score=51.51 Aligned_cols=95 Identities=22% Similarity=0.393 Sum_probs=58.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-CC------------Ccee-
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-FN------------EGEK- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-~~------------~~~~- 123 (262)
.||.|-|||.+|+.+.|.+.+. ..++++|-|. .|++.+.-+.+ ..++-+ ++ +.+.
T Consensus 2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~---------~d~~~~ayll~-yDS~hG~~~~~v~~~~~~l~i~g~~i 71 (171)
T d3cmco1 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDL---------TDANTLAHLLK-YDSVHGRLDAEVSVNGNNLVVNGKEI 71 (171)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECS---------SCHHHHHHHHH-EETTTEECSSCEEEETTEEEETTEEE
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCC---------CCHHHHhhhhc-ccccCCcccccccccCCCEEeCCcce
Confidence 4899999999999999998764 6899999884 36665544433 222211 11 1111
Q ss_pred -c---CCCcc--ccccCceEEeeCCccCcccccchhcc---Cc-eEEEecC
Q psy14499 124 -I---NDSKE--FWSIPCDILIPAAIEDQITINNANNV---TA-KIILEGA 164 (262)
Q Consensus 124 -~---~~~~~--il~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~A 164 (262)
+ .++.+ |.+.++|++++|+.. ..|.+.+... .+ |+|+.+.
T Consensus 72 ~i~~~~~p~~i~W~~~~vDiViEcTG~-f~t~~~~~~hl~~gakkViiSap 121 (171)
T d3cmco1 72 IVKAERDPENLAWGEIGVDIVVESTGR-FTKREDAAKHLEAGAKKVIISAP 121 (171)
T ss_dssp EEECCSSGGGCCTGGGTCCEEEECSSS-CCBHHHHTHHHHTTCSEEEESSC
T ss_pred eeEecCCHHHccccccCCcEEEEecCc-cCCHHHHHHHHhCCCceEEEecc
Confidence 1 12333 335789999999964 4455565554 44 4666543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.93 E-value=0.0061 Score=47.53 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc----ccc-
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK----EFW- 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~----~il- 131 (262)
.+.+|+|.|.|.+|..++.++..+|++.+.++| .+.+++...++ .|. ...++..+ +++
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~----------~~~~k~~~~~~-~ga------~~~i~~~~~~~~~~~~ 94 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALD----------VKEEKLKLAER-LGA------DHVVDARRDPVKQVME 94 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE----------SSHHHHHHHHH-TTC------SEEEETTSCHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCccccccc----------chhHHHHHHhh-ccc------ceeecCcccHHHHHHH
Confidence 578999999999999999999988986666777 46666554443 331 11111011 111
Q ss_pred ---ccCceEEeeCCccCcccccchh--ccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 132 ---SIPCDILIPAAIEDQITINNAN--NVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 132 ---~~~~DIlipaa~~~~it~e~a~--~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
...+|++++|+.....=....+ +...+++.-|...+++-.... +..|++.+.
T Consensus 95 ~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~-l~~k~~~i~ 151 (172)
T d1h2ba2 95 LTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGGELRFPTIR-VISSEVSFE 151 (172)
T ss_dssp HTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSSCCCCCHHH-HHHTTCEEE
T ss_pred hhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcccccCCHHH-HHhCCcEEE
Confidence 2469999999975432122222 235777776654444322223 344667665
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0023 Score=50.01 Aligned_cols=122 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceec
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKI 124 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~ 124 (262)
++++.+.. .+.+|+|+|.|.+|..++.++...|+ +|+ ++| .+..++...++ .|. +..+......
T Consensus 18 a~~~~~~~-~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi-~~d----------~~~~rl~~a~~-~Ga~~~~~~~~~~~~ 84 (171)
T d1pl8a2 18 ACRRGGVT-LGHKVLVCGAGPIGMVTLLVAKAMGAAQVV-VTD----------LSATRLSKAKE-IGADLVLQISKESPQ 84 (171)
T ss_dssp HHHHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEE----------SCHHHHHHHHH-TTCSEEEECSSCCHH
T ss_pred HHHHhCCC-CCCEEEEECCCccHHHHHHHHHHcCCceEE-ecc----------CCHHHHHHHHH-hCCcccccccccccc
Confidence 34555554 56799999999999999999999999 565 777 56777654443 331 0000000000
Q ss_pred CCCccc----cccCceEEeeCCccCcccccchh--ccCceEEEecCCCC-CCHHHHHHHHHCCCeEe
Q psy14499 125 NDSKEF----WSIPCDILIPAAIEDQITINNAN--NVTAKIILEGANGP-TTTEADDILRDKGIILA 184 (262)
Q Consensus 125 ~~~~~i----l~~~~DIlipaa~~~~it~e~a~--~~~~kiIve~AN~p-~t~ea~~~l~~rgi~~i 184 (262)
+ ..+. ....+|+.++|+.....-....+ +...+++.-|...+ .+-... .+..|++.+.
T Consensus 85 ~-~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~ 149 (171)
T d1pl8a2 85 E-IARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIK 149 (171)
T ss_dssp H-HHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEE
T ss_pred c-ccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEE
Confidence 0 0011 12478999999975322122222 22566666665432 332222 3345778776
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.90 E-value=0.0079 Score=45.40 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=59.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
+||+|.|+ |++|+.+++.+.+.+..+++..|.+ ..+.+ .++||
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------------------------~~~~~-~~~DV 44 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------------------------GVEEL-DSPDV 44 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------------------------EEEEC-SCCSE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------------------------cHHHh-ccCCE
Confidence 58999997 9999999999999999998765511 01112 36899
Q ss_pred EeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHH--CCCeE
Q psy14499 138 LIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRD--KGIIL 183 (262)
Q Consensus 138 lipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~--rgi~~ 183 (262)
+|+-+.++... -+.+.+.+.++|++-.. ++++-.+.|++ +.+.+
T Consensus 45 vIDFS~p~~~~~~l~~~~~~~~p~ViGTTG--~~~~~~~~i~~~ak~~pv 92 (128)
T d1vm6a3 45 VIDFSSPEALPKTVDLCKKYRAGLVLGTTA--LKEEHLQMLRELSKEVPV 92 (128)
T ss_dssp EEECSCGGGHHHHHHHHHHHTCEEEECCCS--CCHHHHHHHHHHTTTSEE
T ss_pred EEEecCHHHHHHHHHHHHhcCCCEEEEcCC--CCHHHHHHHHHHHhhCCE
Confidence 99999776543 34455557888877664 56665555543 44444
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.83 E-value=0.0066 Score=47.09 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=70.8
Q ss_pred CeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSV-AANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|+|+|..|+. .+..|.+. +..++ ++| .|++...+..++.+.. ..+++.+++++.++|
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d----------~~~~~~~~~~~~~~~~------~~~~~~~~ll~~~iD 64 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCT----------RNPKVLGTLATRYRVS------ATCTDYRDVLQYGVD 64 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEE-EEC----------SCHHHHHHHHHHTTCC------CCCSSTTGGGGGCCS
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEE----------CCHHHHHHHHHhcccc------cccccHHHhcccccc
Confidence 68999999999976 56777665 45655 888 5788877776654321 123335667767899
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEecc
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPD 186 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD 186 (262)
+++=|++.+ .+.+.+... +..+++|=.=.....++. +..+++|+.+.-.
T Consensus 65 ~V~I~tp~~-~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg 119 (167)
T d1xeaa1 65 AVMIHAATD-VHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVG 119 (167)
T ss_dssp EEEECSCGG-GHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred eeccccccc-ccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999888653 344444332 566888865444445554 3446788776533
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.81 E-value=0.0026 Score=51.29 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCC--C----------ceec
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFN--E----------GEKI 124 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~--~----------~~~~ 124 (262)
...+|+|+|.|.+|..+++.....|+.|. +.| +++.++.++....+.+.... . ++.+
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~-v~D----------~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~ 96 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVM-ATD----------VRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM 96 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC----------SCSTTHHHHHHTTCEECCC------------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEE-EEe----------ccHHHHHHHHHhhcceEEEeccccccccccccchhhc
Confidence 56799999999999999999999999987 888 66666666554433221100 0 0001
Q ss_pred C-----C-Cccccc--cCceEEeeCCc------cCcccccchhccC-ceEEEecC
Q psy14499 125 N-----D-SKEFWS--IPCDILIPAAI------EDQITINNANNVT-AKIILEGA 164 (262)
Q Consensus 125 ~-----~-~~~il~--~~~DIlipaa~------~~~it~e~a~~~~-~kiIve~A 164 (262)
+ . .+.+.+ .++|++|-++. +.++|++..++++ .-+|++-|
T Consensus 97 s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 97 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred CHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 1 0 011111 48999997753 3678999999984 55777644
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.79 E-value=0.0025 Score=50.29 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 48 IASKINLNIINSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
++++++.--.|.+|+|+|.|.||..++.+++.+|+ +|+ ++| .+.+++...+
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi-~~~----------~~~~~~~~a~ 70 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVI-VIA----------GSPNRLKLAE 70 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEE-EEE----------SCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheeccccccccccc-ccc----------cccccccccc
Confidence 34444443468999999999999999999999998 566 666 4666654443
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.76 E-value=0.0013 Score=51.90 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=67.8
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKIND 126 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~ 126 (262)
++..+.. .|.+|+|.|.|.||..++.++...|++++.++| .+.+++...++ .|. +-++.+....+.
T Consensus 21 ~~~~~~~-~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~----------~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~ 88 (174)
T d1f8fa2 21 INALKVT-PASSFVTWGAGAVGLSALLAAKVCGASIIIAVD----------IVESRLELAKQ-LGATHVINSKTQDPVAA 88 (174)
T ss_dssp HTTTCCC-TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE----------SCHHHHHHHHH-HTCSEEEETTTSCHHHH
T ss_pred HHhhCCC-CCCEEEEeCCCHHHhhhhhcccccccceeeeec----------cHHHHHHHHHH-cCCeEEEeCCCcCHHHH
Confidence 3333433 688999999999999999999999998887888 46666554443 331 111111100000
Q ss_pred CccccccCceEEeeCCccCcccccchhcc--CceEEEecC-C--CCCCHHHHHHHHHCCCeEe
Q psy14499 127 SKEFWSIPCDILIPAAIEDQITINNANNV--TAKIILEGA-N--GPTTTEADDILRDKGIILA 184 (262)
Q Consensus 127 ~~~il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~A-N--~p~t~ea~~~l~~rgi~~i 184 (262)
..++..-.+|++++|+.....-.+..+.+ ..+++.=|. . .+.+-...+ +..+++.+.
T Consensus 89 i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~-~~~k~~~i~ 150 (174)
T d1f8fa2 89 IKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVND-LLLGGKTIL 150 (174)
T ss_dssp HHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHH-HHHTTCEEE
T ss_pred HHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHH-HHHCCCEEE
Confidence 00111235899999987543222222322 566665443 2 222222223 345666664
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0012 Score=54.98 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=54.0
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc---
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK--- 128 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~--- 128 (262)
.+.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.+.+..+. ..+++.+
T Consensus 2 ~~~L~GK~~lITGas~GIG~aia~~la~~G~~V~-~~~----------r~~~~l~~~~~~~~~~~~~~--~Dv~d~~~v~ 68 (244)
T d1pr9a_ 2 ELFLAGRRVLVTGAGKGIGRGTVQALHATGARVV-AVS----------RTQADLDSLVRECPGIEPVC--VDLGDWEATE 68 (244)
T ss_dssp CCCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHSTTCEEEE--CCTTCHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEE----------CCHHHHHHHHHhcCCCeEEE--EeCCCHHHHH
Confidence 35689999999996 6799999999999999988 667 46777777766654332221 0011111
Q ss_pred cccc--cCceEEeeCCcc
Q psy14499 129 EFWS--IPCDILIPAAIE 144 (262)
Q Consensus 129 ~il~--~~~DIlipaa~~ 144 (262)
++++ -+.|+||.++..
T Consensus 69 ~~~~~~g~iDilVnnAg~ 86 (244)
T d1pr9a_ 69 RALGSVGPVDLLVNNAAV 86 (244)
T ss_dssp HHHTTCCCCCEEEECCCC
T ss_pred HHHHHhCCceEEEecccc
Confidence 2222 278999988854
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.011 Score=46.74 Aligned_cols=96 Identities=24% Similarity=0.404 Sum_probs=59.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~-- 123 (262)
.||+|-|||.+|+.+.|.+.+. ...+|+|-|. .|++.+.-+.+ -+|++..- . +...
T Consensus 2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~---------~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~ 72 (166)
T d1gado1 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIR 72 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS---------SCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEE
T ss_pred eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC---------CCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEE
Confidence 5899999999999999998876 6899999884 46665543333 23332210 0 0111
Q ss_pred c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cce-EEEecC
Q psy14499 124 I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TAK-IILEGA 164 (262)
Q Consensus 124 ~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~A 164 (262)
+ .+++++ | +.++|++++|+. -..|.+.+... .+| +|+.+.
T Consensus 73 i~~~~~p~~i~W~~~gvDiViEcTG-~f~t~~~~~~hl~~gakkViiSaP 121 (166)
T d1gado1 73 VTAERDPANLKWDEVGVDVVAEATG-LFLTDETARKHITAGAKKVVMTGP 121 (166)
T ss_dssp EECCSSGGGGCHHHHTCSEEEECSS-SCCSHHHHTHHHHTTCSEEEESSC
T ss_pred EEeCCChHHCCccccCCCEEEEccc-cccCHHHHHHHhcCCCceEEeecc
Confidence 1 124443 3 568999999995 44455555544 444 666553
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0033 Score=49.85 Aligned_cols=54 Identities=19% Similarity=0.318 Sum_probs=46.4
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 32 GRQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...++|..|+. +++++.+.++.|++|+|+|-++ ||+-++.+|.+.|++|. ++++
T Consensus 15 ~~~PcTp~aI~----~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt-~~h~ 69 (166)
T d1b0aa1 15 RLRPCTPRGIV----TLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT-VTHR 69 (166)
T ss_dssp SSCCHHHHHHH----HHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE-EECS
T ss_pred CCCCchHHHHH----HHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcccc-cccc
Confidence 46779998875 4556789999999999999877 99999999999999986 8875
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.022 Score=44.96 Aligned_cols=95 Identities=20% Similarity=0.442 Sum_probs=55.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHH---CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee
Q psy14499 59 SKISIQGFGNVGSVAANLFFK---AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~---~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~ 123 (262)
.||+|-|||.+|+.+.|.+.+ ....||+|-|. .|++.+.-+.+ -+|.+..- . +...
T Consensus 1 ~kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~---------~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~ 71 (169)
T d1hdgo1 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDL---------TDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKE 71 (169)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECS---------SCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEE
T ss_pred CEEEEECCChHHHHHHHHHHhccCCCEEEEEeccC---------ccHHHHHHHHhccccccccCceEEEECCEEEECCEE
Confidence 389999999999999999875 35899999873 36666544433 12322210 0 0111
Q ss_pred --c---CCCccc-c-ccCceEEeeCCccCcccccchhcc---Cc-eEEEec
Q psy14499 124 --I---NDSKEF-W-SIPCDILIPAAIEDQITINNANNV---TA-KIILEG 163 (262)
Q Consensus 124 --~---~~~~~i-l-~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~ 163 (262)
+ .+++++ | +.++|++++||.. ..|.+.+... .+ |+|+.+
T Consensus 72 I~~~~~~~p~~i~W~~~gvD~ViEcTG~-f~t~~~~~~hl~~GakkViiSA 121 (169)
T d1hdgo1 72 IKVFAEPDPSKLPWKDLGVDFVIESTGV-FRNREKAELHLQAGAKKVIITA 121 (169)
T ss_dssp EEEECCSSGGGSCHHHHTCCEEEECSSS-CCBHHHHTHHHHTTCSEEEESS
T ss_pred EEEEeCCChhhCCccccCCCEEEEecce-eccccchhhhccCCCceEEEec
Confidence 1 123333 3 4678899998853 3455555544 33 455544
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0038 Score=48.42 Aligned_cols=110 Identities=9% Similarity=0.106 Sum_probs=66.9
Q ss_pred CeEEEEcCCHHHHH-HHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGFGNVGSV-AANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGfG~VG~~-~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|+|+|++|+. .+..|.. .+.++++|+| .+.+...+..++.+ ....++.+++. .++|
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d----------~~~~~~~~~~~~~~-------~~~~~~~~~l~-~~~D 63 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWS----------PTRAKALPICESWR-------IPYADSLSSLA-ASCD 63 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEEC----------SSCTTHHHHHHHHT-------CCBCSSHHHHH-TTCS
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEe----------chhHhhhhhhhccc-------ccccccchhhh-hhcc
Confidence 58999999999975 5677765 4799999999 34444445444432 11222123344 4799
Q ss_pred EEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHH---HHHHHCCCeEeccc
Q psy14499 137 ILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEAD---DILRDKGIILAPDV 187 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~---~~l~~rgi~~iPD~ 187 (262)
+++-|++.. .+.+.+... +..+++|=.=.....|+. +..+++|+.+...+
T Consensus 64 ~V~I~tp~~-~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~ 119 (164)
T d1tlta1 64 AVFVHSSTA-SHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGF 119 (164)
T ss_dssp EEEECSCTT-HHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cccccccch-hccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 999888644 344443332 556888853333334444 34467887776544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0051 Score=48.37 Aligned_cols=118 Identities=12% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC--CCceecCCCccccc
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF--NEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~--~~~~~~~~~~~il~ 132 (262)
+..+|+|.|+ |++|+.+++.+.+ .++++++..|+.+.-+. |-|..+ +.+. ++....++.+.++
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~--g~d~~~----------~~~~~~~~~~~~~~~~~~~- 69 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL--GSDAGE----------LAGAGKTGVTVQSSLDAVK- 69 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC--SCCTTC----------SSSSSCCSCCEESCSTTTT-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc--cchhhh----------hhccccCCceeeccHHHHh-
Confidence 4578999996 9999999998877 58899988886543221 222221 1111 1222222233333
Q ss_pred cCceEEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHH----CCCeEeccccc
Q psy14499 133 IPCDILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRD----KGIILAPDVIT 189 (262)
Q Consensus 133 ~~~DIlipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~----rgi~~iPD~~a 189 (262)
.+|||+|+-+.++... -+.+.+.+..+|++-.. ++++-.+.|++ -+|++.|.+..
T Consensus 70 ~~~DViIDFs~p~~~~~~~~~a~~~~~~~ViGTTG--~~~~~~~~i~~~a~~ipi~~apN~Sl 130 (162)
T d1diha1 70 DDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG--FDEAGKQAIRDAAADIAIVFAANFSM 130 (162)
T ss_dssp TSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHTTTSCEEECSCCCH
T ss_pred cccceEEEeccHHHHHHHHHHHHhccceeEEecCC--CcHHHHHHHHHHcCCCCEEEEccccH
Confidence 5899999999775432 24445557788887655 46665555544 34566677653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.44 E-value=0.006 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.7
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+|.+|+|.| .|.||..+++++..+|++++++++
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~ 58 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG 58 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeec
Confidence 578999988 599999999999999999997766
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.44 E-value=0.0021 Score=53.56 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc---c
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK---E 129 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~---~ 129 (262)
++|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++...+..+. ..+++.+ +
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~~~~~~~~~~--~Dv~~~~~v~~ 67 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVV-AVT----------RTNSDLVSLAKECPGIEPVC--VDLGDWDATEK 67 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHSTTCEEEE--CCTTCHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHhcCCCeEEE--EeCCCHHHHHH
Confidence 4689999999997 5699999999999999988 666 46677777766654332221 0011111 1
Q ss_pred ccc--cCceEEeeCCc
Q psy14499 130 FWS--IPCDILIPAAI 143 (262)
Q Consensus 130 il~--~~~DIlipaa~ 143 (262)
+++ -+.|+||.++.
T Consensus 68 ~~~~~g~iDilVnnAg 83 (242)
T d1cyda_ 68 ALGGIGPVDLLVNNAA 83 (242)
T ss_dssp HHTTCCCCSEEEECCC
T ss_pred HHHHcCCCeEEEECCc
Confidence 221 36899998875
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.37 E-value=0.028 Score=44.42 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=27.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA---GAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~ 90 (262)
+||+|-|||.+|+.+.|.+.+. ...+|+|-|.
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~ 35 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT 35 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence 4899999999999999988763 3789988774
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.36 E-value=0.0087 Score=47.43 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHhCCCC-CCCeEEEEc-CCHHHHHHHHHHHHCCCE-EEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 36 ATGRGVFIIGSKIASKINLNI-INSKISIQG-FGNVGSVAANLFFKAGAK-IVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~~l-~~~~v~IqG-fG~VG~~~a~~L~~~g~~-vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.+|.-.++++.... +... .+.+|+|+| .|.||+.++++.+..|++ |+++++ ..++..++.++.
T Consensus 11 ~~glTA~~~l~~~~---~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~-----------~~e~~~~l~~~~ 76 (187)
T d1vj1a2 11 MPGLTSLIGVQEKG---HISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG-----------TQEKCLFLTSEL 76 (187)
T ss_dssp HHHHHHHHHHHHHS---CCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEES-----------SHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHh---CCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccc-----------hHHHHhhhhhcc
Confidence 44444444444332 2222 357899999 599999999999999985 554455 234444444443
Q ss_pred CC--ccCCCCceecCCCccccccCceEEeeCCccCcccccchhcc--CceEEEecC----------CCCCCHHHHHHHHH
Q psy14499 113 RS--IKDFNEGEKINDSKEFWSIPCDILIPAAIEDQITINNANNV--TAKIILEGA----------NGPTTTEADDILRD 178 (262)
Q Consensus 113 g~--~~~~~~~~~~~~~~~il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~A----------N~p~t~ea~~~l~~ 178 (262)
|. +.+|......+...++-...+|++++|.....+ ....+.+ ..++|.=|. ..+..+.....+..
T Consensus 77 gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~~~-~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~ 155 (187)
T d1vj1a2 77 GFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDIS-NTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKE 155 (187)
T ss_dssp CCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCHHHH-HHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHH
T ss_pred cceEEeeccchhHHHHHHHHhccCceEEEecCCchhH-HHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHh
Confidence 32 222211110000011223469999999975433 3344444 466665442 12234555566778
Q ss_pred CCCeEe
Q psy14499 179 KGIILA 184 (262)
Q Consensus 179 rgi~~i 184 (262)
|++.+-
T Consensus 156 k~i~~~ 161 (187)
T d1vj1a2 156 RNITRE 161 (187)
T ss_dssp TTCEEE
T ss_pred cceEEE
Confidence 888653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0046 Score=49.16 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=45.7
Q ss_pred CCChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCC
Q psy14499 33 RQKATGRGVFIIGSKIASKINLNIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-.+.|..|+. +++++.+.+++|++|+|+|-++ ||+-++.+|.+.|++|. ++++
T Consensus 18 ~~PcTp~aii----~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt-~~~~ 71 (170)
T d1a4ia1 18 FIPCTPKGCL----ELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT-TCHS 71 (170)
T ss_dssp CCCHHHHHHH----HHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE-EECT
T ss_pred CCCChHHHHH----HHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceE-EEec
Confidence 4578888875 4567789999999999999876 99999999999999988 7774
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.016 Score=44.86 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=32.9
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++..+.. .|.+|+|+|.|.||..++++++.+|+++|++.+
T Consensus 23 l~~~~~~-~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~ 62 (168)
T d1uufa2 23 LRHWQAG-PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT 62 (168)
T ss_dssp HHHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHhCCC-CCCEEEEeccchHHHHHHHHhhcccccchhhcc
Confidence 4444444 688999999999999999999999999995444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.25 E-value=0.0091 Score=45.82 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=38.2
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++..+.. .+.+|+|.|.|.||..++.++...|++|+ ++| .+.+++...++
T Consensus 20 l~~~~~~-~g~~vlv~G~G~iG~~a~~~a~~~g~~v~-~~~----------~~~~r~~~~k~ 69 (168)
T d1rjwa2 20 LKVTGAK-PGEWVAIYGIGGLGHVAVQYAKAMGLNVV-AVD----------IGDEKLELAKE 69 (168)
T ss_dssp HHHHTCC-TTCEEEEECCSTTHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHH
T ss_pred HHHhCCC-CCCEEEEeecccchhhhhHHHhcCCCeEe-ccC----------CCHHHhhhhhh
Confidence 4444555 57899999999999999999999999987 556 46666654443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.18 E-value=0.0044 Score=47.55 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=34.9
Q ss_pred CeEEEE-cCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 59 SKISIQ-GFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 59 ~~v~Iq-GfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+||+|+ |.|++|+++|+.|.+.|++|+ +.+ -|++++.+..++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~-l~~----------R~~e~~~~l~~~ 43 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGS----------RREEKAEAKAAE 43 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEE----------SSHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHH
Confidence 589999 789999999999999999998 767 477776666553
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0048 Score=47.25 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=64.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecC-C--Cccccc----
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKIN-D--SKEFWS---- 132 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-~--~~~il~---- 132 (262)
.++|.|+|.+|+.+++.|.+.|..++ |.| .|++...+..++... .+...+. | ..+.|.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~-vId----------~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i 69 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVT-VIS----------NLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEE-EEE----------CCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEE-EEe----------ccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhcc
Confidence 69999999999999999999999988 555 366544333322100 0111110 0 122331
Q ss_pred cCceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeE
Q psy14499 133 IPCDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~ 183 (262)
.++|.+|-++..+..|- ..++++ ..++|+...+ ++-.+.|++.|+..
T Consensus 70 ~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad~ 121 (153)
T d1id1a_ 70 DRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSD----SKNLNKIKMVHPDI 121 (153)
T ss_dssp TTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSS----GGGHHHHHTTCCSE
T ss_pred ccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcC----HHHHHHHHHCCCCE
Confidence 37899999887544333 334444 4577877544 56667788888743
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.12 E-value=0.048 Score=42.76 Aligned_cols=96 Identities=21% Similarity=0.306 Sum_probs=59.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC---C------Ccee--
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF---N------EGEK-- 123 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~---~------~~~~-- 123 (262)
.||+|-|||.+|+.+.|.+.+. ...+++|-|+. .|++.+.-+.+ .+|++... . +.+.
T Consensus 1 tkigINGfGRIGR~v~R~~~~~~~~~iv~INd~~--------~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~ 72 (166)
T d2b4ro1 1 TKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPF--------MDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVS 72 (166)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTT--------CCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEE
T ss_pred CeEEEECCCHHHHHHHHHHhhCCCcEEEEECCCC--------CChHHhhhhhhcccccccceeeeccCCceEEecCcEEE
Confidence 3799999999999999998864 78999998842 36776555544 23332211 0 0010
Q ss_pred -c--CCCcc--ccccCceEEeeCCccCcccccchhcc---Cc-eEEEec
Q psy14499 124 -I--NDSKE--FWSIPCDILIPAAIEDQITINNANNV---TA-KIILEG 163 (262)
Q Consensus 124 -~--~~~~~--il~~~~DIlipaa~~~~it~e~a~~~---~~-kiIve~ 163 (262)
. .++.+ |.+.++|++++|+.. ..|.+.+... .+ |+|+.+
T Consensus 73 i~~~~~p~~i~W~~~gvdiViEcTG~-f~~~~~~~~hl~~gakkViiSA 120 (166)
T d2b4ro1 73 VFAEKDPSQIPWGKCQVDVVCESTGV-FLTKELASSHLKGGAKKVIMSA 120 (166)
T ss_dssp EECCSSGGGCCHHHHTCSEEEECSSS-CCSHHHHTHHHHTTCSEEEESS
T ss_pred EEeCCChHHccccccCCCEEEEeccc-ccchhhhhhhhccCCCEEEEec
Confidence 1 12334 235689999999964 4555555443 44 466654
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.11 E-value=0.01 Score=47.08 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=67.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccC-----C---CCce-ecCCCcc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKD-----F---NEGE-KINDSKE 129 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~-----~---~~~~-~~~~~~~ 129 (262)
++|+|+|.|-||..+|-.|. .|.+|+ ..| +|...+..+....-.+.+ + .... ..+....
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~-g~D----------in~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~ 68 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVT-IVD----------ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSK 68 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEE-EEC----------SCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEE-EEE----------CCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhh
Confidence 58999999999999997774 799998 557 676666555432110100 0 0000 0110111
Q ss_pred ccccCceEEeeCCccCcccccc------hhc-------c-CceEEEecCCCCC--CHHHHHHHHHCCCeEecccccc
Q psy14499 130 FWSIPCDILIPAAIEDQITINN------ANN-------V-TAKIILEGANGPT--TTEADDILRDKGIILAPDVITN 190 (262)
Q Consensus 130 il~~~~DIlipaa~~~~it~e~------a~~-------~-~~kiIve~AN~p~--t~ea~~~l~~rgi~~iPD~~aN 190 (262)
.-..++|+++-|.++..-...+ +.. . +-.+|+--.-.|. +.+..+.+.+..+.+-|.++.-
T Consensus 69 ~~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~~~PE~i~~ 145 (196)
T d1dlja2 69 AAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRE 145 (196)
T ss_dssp HHHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCCCT
T ss_pred hhhhccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhccchhhcch
Confidence 1125799999888764322111 111 1 2234444444443 3455566677788899999883
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.11 E-value=0.0033 Score=50.56 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=51.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCce------ecCCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGE------KINDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~------~~~~~~~il~ 132 (262)
.+|+|+|.|+.|.++|..|.+.|.+|. +.+ .|.+.+..+.+.+.....+|+.+ ..++.++.+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~-l~~----------r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~- 75 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVC-VWH----------MNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAY- 75 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEE-EEC----------SCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHH-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEE-EEE----------ecHHHHHHHhhcccccccccccccccccccchhhhhcc-
Confidence 479999999999999999999998877 555 46676666655443333333322 111122333
Q ss_pred cCceEEeeCCccCcc
Q psy14499 133 IPCDILIPAAIEDQI 147 (262)
Q Consensus 133 ~~~DIlipaa~~~~i 147 (262)
.++|+++-|.+...+
T Consensus 76 ~~ad~iiiavPs~~~ 90 (189)
T d1n1ea2 76 NGAEIILFVIPTQFL 90 (189)
T ss_dssp TTCSCEEECSCHHHH
T ss_pred CCCCEEEEcCcHHHH
Confidence 489999998876544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.10 E-value=0.01 Score=46.64 Aligned_cols=102 Identities=15% Similarity=0.107 Sum_probs=58.3
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCC
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDS 127 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~ 127 (262)
+..+.. .|.+|+|+|.|.||...+++++.+|++.|-++| .+.+++...+ +.|. +-++.+... .
T Consensus 21 ~~a~~~-~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d----------~~~~r~~~a~-~lGa~~~i~~~~~~~---~ 85 (174)
T d1jqba2 21 ELADIE-MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG----------SRPICVEAAK-FYGATDILNYKNGHI---E 85 (174)
T ss_dssp HHTTCC-TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEEC----------CCHHHHHHHH-HHTCSEEECGGGSCH---H
T ss_pred HHhCCC-CCCEEEEEcCCcchhhhhhhhhccccccccccc----------chhhhHHHHH-hhCccccccccchhH---H
Confidence 443444 578999999999999999999999985343777 5666654443 3331 111111000 1
Q ss_pred ccccc----cCceEEeeCCccC-cccc-cchhccCceEEEecCCC
Q psy14499 128 KEFWS----IPCDILIPAAIED-QITI-NNANNVTAKIILEGANG 166 (262)
Q Consensus 128 ~~il~----~~~DIlipaa~~~-~it~-e~a~~~~~kiIve~AN~ 166 (262)
+.+.+ ..+|++|+|+... .++. -.+-+...++++=|...
T Consensus 86 ~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~ 130 (174)
T d1jqba2 86 DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG 130 (174)
T ss_dssp HHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred HHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence 12222 3489999998743 2221 11222256666655443
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=96.09 E-value=0.054 Score=42.76 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=58.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHHHHHHHHH---hcCCccCC----C-----Cce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKA----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT---FTRSIKDF----N-----EGE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~---~~g~~~~~----~-----~~~ 122 (262)
+||+|-|||.+|+.++|.+.+. ...||+|-|. .|++.+.-+.+ -+|++... . +..
T Consensus 2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~---------~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~ 72 (173)
T d1obfo1 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDL---------GDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGD 72 (173)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECS---------SCHHHHHHHHHEETTTEECSSCEEEETTEEEETTE
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCC---------CChHHHHHhhcccccCCCcCceEEeccceEEECCE
Confidence 5899999999999999998763 5789989884 36655543333 12222210 0 111
Q ss_pred e---c--CCCccc--cccCceEEeeCCccCcccccchhcc---Cce-EEEec
Q psy14499 123 K---I--NDSKEF--WSIPCDILIPAAIEDQITINNANNV---TAK-IILEG 163 (262)
Q Consensus 123 ~---~--~~~~~i--l~~~~DIlipaa~~~~it~e~a~~~---~~k-iIve~ 163 (262)
. . .+++++ -+.++|++++|+.. ..+.+.+... .+| +|+.+
T Consensus 73 ~i~i~~~~~p~~i~W~~~gvDiViEcTG~-f~~~~~a~~hl~~GakkViiSA 123 (173)
T d1obfo1 73 KIRVDANRNPAQLPWGALKVDVVLECTGF-FTTKEKAGAHIKGGAKKVIISA 123 (173)
T ss_dssp EEEEECCSCGGGSCTTTTTCSEEEECSSS-CCSHHHHHHHHHHTCSEEEESS
T ss_pred EEEEEecCCHHHCcccccccceEEEeccc-ccCHHHHHHHhccCCcceEEec
Confidence 1 1 123443 35789999999964 4556665554 444 55554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.08 E-value=0.0093 Score=46.99 Aligned_cols=77 Identities=21% Similarity=0.129 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC-c----ccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS-K----EFW 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~-~----~il 131 (262)
.|.+|+|+|.|.||...+..+...|++.|.++| .+.+++...+ +.|.-.-+ .....++. . +..
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d----------~~~~r~~~a~-~~Ga~~~i-~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID----------INGEKFPKAK-ALGATDCL-NPRELDKPVQDVITELT 95 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC----------SCGGGHHHHH-HTTCSEEE-CGGGCSSCHHHHHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeec----------cchHHHHHHH-HhCCCccc-CCccchhhhhhhHhhhh
Confidence 678999999999999999999999997665888 4556643333 33321100 00000000 0 112
Q ss_pred ccCceEEeeCCccC
Q psy14499 132 SIPCDILIPAAIED 145 (262)
Q Consensus 132 ~~~~DIlipaa~~~ 145 (262)
...+|+.++|+...
T Consensus 96 ~~G~d~vie~~G~~ 109 (174)
T d1e3ia2 96 AGGVDYSLDCAGTA 109 (174)
T ss_dssp TSCBSEEEESSCCH
T ss_pred cCCCcEEEEecccc
Confidence 35789999998643
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.07 E-value=0.02 Score=44.16 Aligned_cols=121 Identities=14% Similarity=0.142 Sum_probs=66.9
Q ss_pred HHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecC
Q psy14499 49 ASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKIN 125 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~ 125 (262)
++..+.. .+.+|+|.|. |.+|..++.++...|.+.|.++| .+.+++...++ .|. +-++......
T Consensus 20 l~~~~~~-~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~----------~~~~~~~~~~~-~Ga~~~i~~~~~~~~- 86 (170)
T d1jvba2 20 VRKASLD-PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD----------VREEAVEAAKR-AGADYVINASMQDPL- 86 (170)
T ss_dssp HHHTTCC-TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEE----------SSHHHHHHHHH-HTCSEEEETTTSCHH-
T ss_pred HHHhCCC-CCCEEEEEeccccceeeeeecccccccccccccc----------cchhhHHHHHH-cCCceeeccCCcCHH-
Confidence 3444444 5789999996 99999999999999965454777 46666544443 231 1111110000
Q ss_pred CCcccc----ccCceEEeeCCccCcccccchhcc--CceEEEecCCC-CCCHHHHHHHHHCCCeEec
Q psy14499 126 DSKEFW----SIPCDILIPAAIEDQITINNANNV--TAKIILEGANG-PTTTEADDILRDKGIILAP 185 (262)
Q Consensus 126 ~~~~il----~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~-p~t~ea~~~l~~rgi~~iP 185 (262)
+++. ...+|++++|+.....-......+ ..++|+=|... +.+-....+ ..|++.+..
T Consensus 87 --~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~-~~k~i~i~G 150 (170)
T d1jvba2 87 --AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI-TLSEIQFVG 150 (170)
T ss_dssp --HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH-HHHTCEEEE
T ss_pred --HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHH-HhCCcEEEE
Confidence 1122 246999999997543223333333 46666555433 333222233 346677753
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0079 Score=47.79 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHhCC---------CCCCCeEEEEcCCH-HHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 36 ATGRGVFIIGSKIASKINL---------NIINSKISIQGFGN-VGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 36 aTg~Gv~~~~~~~~~~~g~---------~l~~~~v~IqGfG~-VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
.|.+|+. ++|++.++ +++|++++|+|=++ ||+-++.+|.++|++|. +++++.
T Consensus 2 cTp~gv~----~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt-~~~~~~ 63 (171)
T d1edza1 2 CTPLAIV----KILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVY-SVDVNN 63 (171)
T ss_dssp HHHHHHH----HHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEE-EECSSE
T ss_pred CcHHHHH----HHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEE-Eecccc
Confidence 5666664 45555444 89999999999765 79999999999999987 888653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.97 E-value=0.014 Score=46.75 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=49.6
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCc
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSK 128 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~ 128 (262)
+..+.. .|.+|+|+|.|.||..++..+...|+..|.++| .+.+++...++ .|. ....+..+.+ .+
T Consensus 19 ~~a~v~-~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d----------~~~~rl~~a~~-~Ga~~~~~~~~~~~--~~ 84 (195)
T d1kola2 19 VTAGVG-PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGD----------LNPARLAHAKA-QGFEIADLSLDTPL--HE 84 (195)
T ss_dssp HHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE----------SCHHHHHHHHH-TTCEEEETTSSSCH--HH
T ss_pred HHhCCC-CCCEEEEECcCHHHHHHHHHHHhhcccceeeec----------ccchhhHhhhh-ccccEEEeCCCcCH--HH
Confidence 333444 577999999999999999999889985555777 56666544443 331 0000011000 01
Q ss_pred ccc----ccCceEEeeCCcc
Q psy14499 129 EFW----SIPCDILIPAAIE 144 (262)
Q Consensus 129 ~il----~~~~DIlipaa~~ 144 (262)
.+. ...+|+.++|...
T Consensus 85 ~i~~~t~g~g~D~vid~vG~ 104 (195)
T d1kola2 85 QIAALLGEPEVDCAVDAVGF 104 (195)
T ss_dssp HHHHHHSSSCEEEEEECCCT
T ss_pred HHHHHhCCCCcEEEEECccc
Confidence 121 2468999999763
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.97 E-value=0.05 Score=43.60 Aligned_cols=45 Identities=20% Similarity=0.351 Sum_probs=34.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHC-----CCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKA-----GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~-----g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.+||+|-|||.+|+.+.|.+.+. ...+++|-|. +.|++.+.-+.+
T Consensus 2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~--------~~~~~~~ayLlk 51 (190)
T d1k3ta1 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDM--------NTDAEYFAYQMR 51 (190)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEES--------CCCHHHHHHHHH
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecC--------CCCHHHHHHHhh
Confidence 46899999999999999988764 3588988873 357777655544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.92 E-value=0.011 Score=45.57 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG--AKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D 89 (262)
+.++|+|+|.|+||..+|..|...| ..++ +.|
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elv-L~D 37 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFV-IVD 37 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEE-Eee
Confidence 5679999999999999999998877 3565 777
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.013 Score=45.47 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=63.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc--
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il-- 131 (262)
.|.+|+|.|. |.||..+++++...|++++++++ +.+++...++ .|. +-++.+... .+.+.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~-----------~~~~~~~~~~-~Ga~~vi~~~~~~~---~~~i~~~ 92 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG-----------TEEGQKIVLQ-NGAHEVFNHREVNY---IDKIKKY 92 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES-----------SHHHHHHHHH-TTCSEEEETTSTTH---HHHHHHH
T ss_pred CCCEEEEEeccccccccccccccccCcccccccc-----------cccccccccc-cCcccccccccccH---HHHhhhh
Confidence 6889999995 99999999999999999997776 3445433333 331 111111000 01121
Q ss_pred --ccCceEEeeCCccCcccccchhcc--CceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 132 --SIPCDILIPAAIEDQITINNANNV--TAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
...+|++++|.....++ ...+.+ ..++|.=|...+.+....+. ..|++.+.
T Consensus 93 t~~~g~d~v~d~~g~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~k~~~i~ 147 (174)
T d1yb5a2 93 VGEKGIDIIIEMLANVNLS-KDLSLLSHGGRVIVVGSRGTIEINPRDT-MAKESSII 147 (174)
T ss_dssp HCTTCEEEEEESCHHHHHH-HHHHHEEEEEEEEECCCCSCEEECTHHH-HTTTCEEE
T ss_pred hccCCceEEeecccHHHHH-HHHhccCCCCEEEEEecCCCCCCCHHHH-HHCCCEEE
Confidence 24689999998754332 222223 46666655544432222233 34566664
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.83 E-value=0.029 Score=42.96 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCCceeeCCCCCCHHHHHHHHHh--c-CCccCCCCceecCCCccc
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQDDKTTIYNPNGFNIPKLQKYVTF--T-RSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D~~G~i~~~~GlD~~~l~~~~~~--~-g~~~~~~~~~~~~~~~~i 130 (262)
-.+.||+|+|.|+||+.+|..|...+. .++ ..| ++.+.+...... + -.+... .....++..+-
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~-L~D----------i~~~~~~g~a~Dl~~~~~~~~~-~~~~~~~d~~~ 71 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIV-LID----------ANESKAIGDAMDFNHGKVFAPK-PVDIWHGDYDD 71 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SSHHHHHHHHHHHHHHTTSSSS-CCEEEECCGGG
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEE-EEe----------eccccccchhccHhhCccccCC-CeEEEECCHHH
Confidence 367899999999999999999988764 555 777 555543222111 1 111111 11111212223
Q ss_pred cccCceEEeeCCccC
Q psy14499 131 WSIPCDILIPAAIED 145 (262)
Q Consensus 131 l~~~~DIlipaa~~~ 145 (262)
+ .+||++|-++...
T Consensus 72 l-~daDvvvitag~~ 85 (148)
T d1ldna1 72 C-RDADLVVICAGAN 85 (148)
T ss_dssp T-TTCSEEEECCSCC
T ss_pred h-ccceeEEEecccc
Confidence 3 5899999887643
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.015 Score=45.42 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=32.8
Q ss_pred HHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++.+.. ++.+|+|+|. |.||+.++++++..|++|+++++
T Consensus 20 l~~~~~~-~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~ 60 (171)
T d1iz0a2 20 LKRAQAR-PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS 60 (171)
T ss_dssp HHHTTCC-TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHhCCC-CCCEEEEEeccccchhhhhhhhcccccccccccc
Confidence 4443333 7889999995 99999999999999999997765
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.79 E-value=0.032 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=61.7
Q ss_pred eEEEEc-CCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceE
Q psy14499 60 KISIQG-FGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDI 137 (262)
Q Consensus 60 ~v~IqG-fG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DI 137 (262)
||+|.| .|.+|+.+++.+.+ .++++++..|.. -+ .......++||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~--------~~-------------------------~~~~~~~~~Dv 47 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG--------DP-------------------------LSLLTDGNTEV 47 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT--------CC-------------------------THHHHTTTCSE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC--------Cc-------------------------hhhhccccCCE
Confidence 789999 59999999998766 679999887631 00 11223357999
Q ss_pred EeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHH-----CC--CeEeccccc
Q psy14499 138 LIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRD-----KG--IILAPDVIT 189 (262)
Q Consensus 138 lipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~-----rg--i~~iPD~~a 189 (262)
+|+-+.+.... -+.+.+.+..+|++-.. ++++-.+.|++ ++ |++.|.|..
T Consensus 48 vIDFS~p~~~~~~~~~~~~~~~~~ViGTTG--~~~~~~~~l~~~~~~~~~ipil~apNfSl 106 (135)
T d1yl7a1 48 VIDFTHPDVVMGNLEFLIDNGIHAVVGTTG--FTAERFQQVESWLVAKPNTSVLIAPNFTS 106 (135)
T ss_dssp EEECCCTTTHHHHHHHHHHTTCEEEECCCC--CCHHHHHHHHHHHHSCTTCEEEECSCCGG
T ss_pred EEEcccHHHHHHHHHHHHhcCCCEEEeccc--cchhHHHHHHHHHHhcCCCCEEEcCCccH
Confidence 99999776543 34455567888885433 34554444432 33 566677644
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.73 E-value=0.0032 Score=48.09 Aligned_cols=85 Identities=9% Similarity=0.048 Sum_probs=53.2
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCceEEee
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCDILIP 140 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~DIlip 140 (262)
|.++|.|++|+++++.|.+ +..++.|.+ -+++++.++.++.+.. ..+ ..++. .++||++-
T Consensus 2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~----------R~~~~~~~l~~~~~~~-------~~~-~~~~~-~~~DiVil 61 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKD-RYEIGYILS----------RSIDRARNLAEVYGGK-------AAT-LEKHP-ELNGVVFV 61 (153)
T ss_dssp CEEESCCHHHHHHHHTTC-----CCCEEC----------SSHHHHHHHHHHTCCC-------CCS-SCCCC-C---CEEE
T ss_pred EEEEeCcHHHHHHHHHHHh-CCCEEEEEe----------CChhhhcchhhccccc-------ccc-hhhhh-ccCcEEEE
Confidence 4689999999999998866 444444555 4788888887765421 122 44444 57999999
Q ss_pred CCccCcccccchhcc--CceEEEecCCC
Q psy14499 141 AAIEDQITINNANNV--TAKIILEGANG 166 (262)
Q Consensus 141 aa~~~~it~e~a~~~--~~kiIve~AN~ 166 (262)
|-+.+.+. +.+.++ +-++|+.-++.
T Consensus 62 ~v~d~~i~-~v~~~l~~~~~ivi~~s~~ 88 (153)
T d2i76a2 62 IVPDRYIK-TVANHLNLGDAVLVHCSGF 88 (153)
T ss_dssp CSCTTTHH-HHHTTTCCSSCCEEECCSS
T ss_pred eccchhhh-HHHhhhcccceeeeecccc
Confidence 98766553 445555 46788877765
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.70 E-value=0.027 Score=44.44 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=66.9
Q ss_pred HHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecC
Q psy14499 49 ASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKIN 125 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~ 125 (262)
+...|...++.+|.|+| .|.||..+.++....|++|++.+.++. ++... ++.|. +.+|++.. .+
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~-----------k~~~~-~~lGa~~vi~~~~~~-~~ 89 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA-----------EHDYL-RVLGAKEVLAREDVM-AE 89 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT-----------CHHHH-HHTTCSEEEECC------
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchH-----------HHHHH-HhcccceeeecchhH-HH
Confidence 33456667899999999 599999999999999999998875311 11111 22221 11221110 00
Q ss_pred CCccccccCceEEeeCCccCcccccchhcc--CceEEEecCC-CCC-CHHHHHHHHHCCCeEe
Q psy14499 126 DSKEFWSIPCDILIPAAIEDQITINNANNV--TAKIILEGAN-GPT-TTEADDILRDKGIILA 184 (262)
Q Consensus 126 ~~~~il~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN-~p~-t~ea~~~l~~rgi~~i 184 (262)
.....-...+|+++++-.+.. -.+....+ ..++|.=|.- ++. +...... .-|++.++
T Consensus 90 ~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~-~~k~~~i~ 150 (176)
T d1xa0a2 90 RIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPF-ILRGVSLL 150 (176)
T ss_dssp ----CCSCCEEEEEECSTTTT-HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHH-HHTTCEEE
T ss_pred HHHHhhccCcCEEEEcCCchh-HHHHHHHhCCCceEEEeecccCcccCCCHHHH-HHCCcEEE
Confidence 001112357999999876543 33444444 5666655543 332 3333333 34556553
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=95.70 E-value=0.011 Score=48.69 Aligned_cols=112 Identities=10% Similarity=0.111 Sum_probs=68.3
Q ss_pred CCCeEEEEcCCHHHHHH----HHHHHH--CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccc
Q psy14499 57 INSKISIQGFGNVGSVA----ANLFFK--AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEF 130 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~----a~~L~~--~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~i 130 (262)
+..||+|+|+|..|... +..|.+ .++++++|+| .|.+...+..++.+ .+..+.+++.+++
T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d----------~~~~~~~~~~~~~~----~~~~~~~~~~~~l 80 (237)
T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYN----------PTLKSSLQTIEQLQ----LKHATGFDSLESF 80 (237)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEEC----------SCHHHHHHHHHHTT----CTTCEEESCHHHH
T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEc----------CCHHHHHHHHHhcc----cccceeecchhhc
Confidence 66899999999855433 334444 4789999999 68887777666542 1233444445566
Q ss_pred c-ccCceEEeeCCccCcccccchhc-c--------CceEEEecCCCCCCHHHHHHH---HHCC-CeE
Q psy14499 131 W-SIPCDILIPAAIEDQITINNANN-V--------TAKIILEGANGPTTTEADDIL---RDKG-IIL 183 (262)
Q Consensus 131 l-~~~~DIlipaa~~~~it~e~a~~-~--------~~kiIve~AN~p~t~ea~~~l---~~rg-i~~ 183 (262)
+ +.+.|+++-|++.. .+.+.+.. + ...+++|=.=.....|+++++ ++++ +.+
T Consensus 81 ~~~~~iD~V~i~tp~~-~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~ 146 (237)
T d2nvwa1 81 AQYKDIDMIVVSVKVP-EHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQT 146 (237)
T ss_dssp HHCTTCSEEEECSCHH-HHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEE
T ss_pred ccccccceeeccCCCc-chhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeE
Confidence 6 46899999998743 33333322 1 135888864444445666544 3554 543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.63 E-value=0.029 Score=42.95 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=37.3
Q ss_pred HHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 50 SKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 50 ~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++.+.. .|.+|+|+|.|.||..++.+++..|++|++ +| .+.+++...++
T Consensus 21 ~~~~~~-~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~-~~----------~~~~~~~~a~~ 69 (166)
T d1llua2 21 KQTNAR-PGQWVAISGIGGLGHVAVQYARAMGLHVAA-ID----------IDDAKLELARK 69 (166)
T ss_dssp HHHTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEE-EE----------SCHHHHHHHHH
T ss_pred HHhCCC-CCCEEEEeeccccHHHHHHHHHHcCCccce-ec----------chhhHHHhhhc
Confidence 444444 578999999999999999999999999984 45 46666544443
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.53 E-value=0.02 Score=42.32 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=34.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
..++++|+|.|.+|..+|..|.+.|.+|. +.+..-.+.. ..+|.+
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt-li~~~~~~l~-~~~~~~ 73 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVS-LVETQPRLMS-RAAPAT 73 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSTTT-TTSCHH
T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEE-EEeecccccc-ccCCHH
Confidence 46899999999999999999999999988 6665433332 235553
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0085 Score=45.74 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
..++|++|+|+|.|.||..-++.|.+.|++|+-|+
T Consensus 9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva 43 (150)
T d1kyqa1 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS 43 (150)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 36899999999999999999999999999998453
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.32 E-value=0.02 Score=47.63 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 50 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVY-TCS----------RNQKELNDCLT 50 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 899999999997 5699999999999999988 777 46666655443
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=95.29 E-value=0.079 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+...+|+|+|.|+||+.+|-.|...|. .++ +.|
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~Elv-LiD 52 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSLADELA-LVD 52 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEE-EEE
Confidence 567899999999999999999998885 665 777
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.24 E-value=0.033 Score=42.43 Aligned_cols=30 Identities=37% Similarity=0.437 Sum_probs=25.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
.+|+|+|.|+||..++-.|...+. .++ +.|
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~-L~D 33 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELV-LID 33 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEE-EEC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 479999999999999999988774 555 777
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.025 Score=46.91 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=53.8
Q ss_pred CCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc---
Q psy14499 53 NLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK--- 128 (262)
Q Consensus 53 g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~--- 128 (262)
|..|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .|.+++.+..++.+....+. . .+++.+
T Consensus 1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~~~~~~~~~~~~~~~~-~-Dvs~~~~v~ 67 (250)
T d1ydea1 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVV-ICD----------KDESGGRALEQELPGAVFIL-C-DVTQEDDVK 67 (250)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHCTTEEEEE-C-CTTSHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHhcCCCeEEE-c-cCCCHHHHH
Confidence 56789999999996 7799999999999999988 777 57777777766644322111 0 011111
Q ss_pred ----cccc--cCceEEeeCCc
Q psy14499 129 ----EFWS--IPCDILIPAAI 143 (262)
Q Consensus 129 ----~il~--~~~DIlipaa~ 143 (262)
++.+ -..|+||-++.
T Consensus 68 ~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 68 TLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEeccc
Confidence 1221 36899998875
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.021 Score=45.67 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=29.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
=++|+|+|.|.+|+.+|..+...|+.|+ +.|
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~-l~D 34 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVV-LVD 34 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEE-EEE
Confidence 3699999999999999999999999988 888
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.17 E-value=0.023 Score=44.47 Aligned_cols=95 Identities=18% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCc--cCCCCceecCCCcccc---
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSI--KDFNEGEKINDSKEFW--- 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~--~~~~~~~~~~~~~~il--- 131 (262)
.|.+|+|+|.|.||...+..+...|++.|.++| .+.+++...++ .|.- -++...... ..+..
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d----------~~~~kl~~a~~-lGa~~~i~~~~~d~~--~~~~~~~~ 93 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG----------THKDKFPKAIE-LGATECLNPKDYDKP--IYEVICEK 93 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC----------SCGGGHHHHHH-TTCSEEECGGGCSSC--HHHHHHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccC----------ChHHHHHHHHH-cCCcEEEcCCCchhH--HHHHHHHh
Confidence 678999999999999999999999986555878 56666544443 3311 111000000 01111
Q ss_pred -ccCceEEeeCCccCcccccchhcc---CceEEEecC
Q psy14499 132 -SIPCDILIPAAIEDQITINNANNV---TAKIILEGA 164 (262)
Q Consensus 132 -~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~A 164 (262)
.-..|+.++|+.......+....+ ..++|+-|.
T Consensus 94 ~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 94 TNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp TTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEE
Confidence 236899999987654444444444 245665553
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.10 E-value=0.034 Score=43.02 Aligned_cols=80 Identities=19% Similarity=0.105 Sum_probs=47.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCcc--CCCCc-eecCC-Cccccc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIK--DFNEG-EKIND-SKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~--~~~~~-~~~~~-~~~il~ 132 (262)
.|.+|+|+|.|.+|..++.++...|+..|-++| .+.+++...++ .|... .+.+. ..+.. ....-.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~----------~~~~k~~~a~~-~Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD----------INKDKFAKAKE-VGATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC----------SCGGGHHHHHH-TTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeec----------CcHHHHHHHHH-hCCeeEEecCCchhHHHHHHHHHhc
Confidence 788999999999999999999999964444667 46666544443 33111 01000 00000 000112
Q ss_pred cCceEEeeCCccCcc
Q psy14499 133 IPCDILIPAAIEDQI 147 (262)
Q Consensus 133 ~~~DIlipaa~~~~i 147 (262)
..+|+.++|+.....
T Consensus 97 ~G~D~vid~~G~~~~ 111 (176)
T d2jhfa2 97 GGVDFSFEVIGRLDT 111 (176)
T ss_dssp SCBSEEEECSCCHHH
T ss_pred CCCCEEEecCCchhH
Confidence 468999999875433
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.05 E-value=0.013 Score=46.92 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|||+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~-vlE~ 32 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVT-VFEA 32 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEE-EECS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEE-EEeC
Confidence 5899999999999999999999999987 8875
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.05 E-value=0.1 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
.++..+|+|+|.|+||..+|..|...+. .++ +.|
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elv-L~D 51 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELA-LVD 51 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEE-EEC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEE-EEe
Confidence 4677799999999999999999988774 555 777
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.014 Score=44.40 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=29.9
Q ss_pred CCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++.=++|+|+| .|++|+.+|+.|.+.|+.|. +.|
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d 40 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILD 40 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EEC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-ecc
Confidence 44557999999 99999999999999999987 666
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.99 E-value=0.05 Score=39.38 Aligned_cols=44 Identities=20% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
..++++|+|.|.+|..+|..|.++|.+|+ +.+....+. | ++|.+
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~il-~-~~d~~ 64 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGTKVT-ILEGAGEIL-S-GFEKQ 64 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSSS-T-TSCHH
T ss_pred cCCeEEEECCCccceeeeeeecccccEEE-EEEecceec-c-cccch
Confidence 45799999999999999999999999988 666544443 2 47765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.024 Score=43.84 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=32.2
Q ss_pred HHHhCCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Q psy14499 49 ASKINLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+++.+.. .|.+|+|+|.|.||..++++++..|++|+++.
T Consensus 20 l~~~~~~-~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~ 58 (168)
T d1piwa2 20 LVRNGCG-PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS 58 (168)
T ss_dssp HHHTTCS-TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHhCcC-CCCEEEEECCCCcchhHHHHhhhccccccccc
Confidence 4444544 67899999999999999999999999999554
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=94.96 E-value=0.045 Score=43.07 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCCeEEEE--cCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQ--GFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~Iq--GfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.|.+|+|+ |.|.||..++++.+..|++++++++
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~ 62 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIR 62 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEe
Confidence 46788888 6799999999999999999998875
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=94.91 E-value=0.058 Score=47.06 Aligned_cols=138 Identities=15% Similarity=0.112 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
..|+.=...+---+.+++-.+ .-++++|+|.|..++.-++.+.+ ++.+-|-|.| .|+++..++.++..
T Consensus 106 ~LTa~RTaA~salaa~~LA~~-da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~----------r~~~~~~~~~~~l~ 174 (340)
T d1x7da_ 106 IATALRTAATSLMAAQALARP-NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYD----------TDPLATAKLIANLK 174 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEEC----------SSHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHhhcc-CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEe----------cChHHHHHHHHhhh
Confidence 345443333333345665432 45799999999999999987755 6776676777 67777666665432
Q ss_pred CccCCCCce--ecCCCccccccCceEEeeCCccC----cccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEeccc
Q psy14499 114 SIKDFNEGE--KINDSKEFWSIPCDILIPAAIED----QITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPDV 187 (262)
Q Consensus 114 ~~~~~~~~~--~~~~~~~il~~~~DIlipaa~~~----~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD~ 187 (262)
. +++.+ ..++.++.. .++||++-|+.++ +++.+..+ -.+-+..=|++.|-..|....+.++.-.| .|+
T Consensus 175 ~---~~g~~v~~~~s~~eav-~~ADIi~t~Tas~s~~Pv~~~~~l~-pG~hI~aiGs~~p~~~Eld~~~l~~a~v~-VD~ 248 (340)
T d1x7da_ 175 E---YSGLTIRRASSVAEAV-KGVDIITTVTADKAYATIITPDMLE-PGMHLNAVGGDCPGKTELHADVLRNARVF-VEY 248 (340)
T ss_dssp T---CTTCEEEECSSHHHHH-TTCSEEEECCCCSSEEEEECGGGCC-TTCEEEECSCCBTTBEEECHHHHHTSEEE-ESS
T ss_pred h---ccCCCceecCCHHHHH-hcCCceeeccccCCCCcccchhhcC-CCCEEeecccchhhhhccCHHHHhcCcEE-Eec
Confidence 2 22222 233233444 5899999888643 45554433 24667778888886555443344444333 355
Q ss_pred cc
Q psy14499 188 IT 189 (262)
Q Consensus 188 ~a 189 (262)
..
T Consensus 249 ~~ 250 (340)
T d1x7da_ 249 EP 250 (340)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.89 E-value=0.029 Score=46.65 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~-i~~ 37 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVY-TCS 37 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 789999999995 7799999999999999988 666
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=94.89 E-value=0.028 Score=47.17 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vi-i~~ 56 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCV-IAS 56 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEE
Confidence 689999999995 8899999999999999998 777
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=94.86 E-value=0.046 Score=41.67 Aligned_cols=30 Identities=37% Similarity=0.550 Sum_probs=25.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
.+|+|+|.|+||.++|-.|...+. .++ +.|
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~Elv-L~D 33 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIV-LED 33 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEE-EEE
Confidence 589999999999999999988774 566 767
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.86 E-value=0.022 Score=45.96 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++...||+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 1 ~~~~~kV~IiGaG~aGl~~A~~L~~~G~~v~-v~Er 35 (265)
T d2voua1 1 SPTTDRIAVVGGSISGLTAALMLRDAGVDVD-VYER 35 (265)
T ss_dssp CCCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCCEE-EEeC
Confidence 3567899999999999999999999999988 8885
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.85 E-value=0.03 Score=46.33 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=36.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~~~~~~ 46 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVV-VAS----------RNLEEASEAA 46 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHH
Confidence 689999999997 6699999999999999987 777 5666655543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.84 E-value=0.0099 Score=46.17 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.++||+|+|.|+.|..+|..|.++|++-|.|.|..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~ 37 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ 37 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence 36899999999999999999999999633377753
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.79 E-value=0.029 Score=47.08 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=39.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~l~~~~~~~ 49 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVA-VLD----------KSAERLAELETDH 49 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHc
Confidence 589999999996 7899999999999999988 777 4677777766543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.72 E-value=0.034 Score=46.26 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~~~~~~~~~ 49 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVV-LAD----------VLDEEGAATAREL 49 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHh
Confidence 689999999997 5699999999999999987 777 5777777766553
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.70 E-value=0.025 Score=45.25 Aligned_cols=30 Identities=37% Similarity=0.546 Sum_probs=27.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+|.|-||..+|-.|.+.|.+|+ ..|
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~-g~D 30 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVI-GVD 30 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEE-EEC
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEE-EEe
Confidence 579999999999999999999999998 667
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.70 E-value=0.072 Score=40.65 Aligned_cols=30 Identities=40% Similarity=0.613 Sum_probs=25.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
++|+|+|.|+||..+|-.|...|. .++ ..|
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~D 33 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYV-FID 33 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEE-EEe
Confidence 689999999999999998887663 555 667
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.021 Score=43.24 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+||+|+|.|++|+.++..|.+.|+.|..+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r 31 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR 31 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence 6899999999999999999999999885543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.66 E-value=0.021 Score=45.28 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=50.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh----------cCCccCCC-C-----ce
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF----------TRSIKDFN-E-----GE 122 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~----------~g~~~~~~-~-----~~ 122 (262)
++|+|+|.|.+|+..|..+...|++|+ +.| .|.+.+.+..+. .+.+.... . ..
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~-l~D----------~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 73 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPIL-MKD----------INEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR 73 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEE-EEC----------SSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEE----------CCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee
Confidence 579999999999999999999999988 888 566655443321 11111100 0 00
Q ss_pred ecCCCccccccCceEEeeCCccCcccc
Q psy14499 123 KINDSKEFWSIPCDILIPAAIEDQITI 149 (262)
Q Consensus 123 ~~~~~~~il~~~~DIlipaa~~~~it~ 149 (262)
.-.+.++ + .+||++++|.+++.--.
T Consensus 74 ~~~~~~~-~-~~adlViEav~E~l~~K 98 (186)
T d1wdka3 74 PTLSYGD-F-GNVDLVVEAVVENPKVK 98 (186)
T ss_dssp EESSSTT-G-GGCSEEEECCCSCHHHH
T ss_pred ccccccc-c-cccceeeeeecchHHHH
Confidence 1111122 2 58999999998876544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.64 E-value=0.048 Score=42.59 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC-ccCCCCceecCCCccc----
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS-IKDFNEGEKINDSKEF---- 130 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~-~~~~~~~~~~~~~~~i---- 130 (262)
.|.+|+|+|.|.+|...+.++..+|+ +|+ ++| .+.+++...++-... +-++.+.... ...+
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi-~vd----------~~~~kl~~Ak~~GA~~~in~~~~~~~--~~~~~~~~ 95 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRII-GID----------LNKDKFEKAMAVGATECISPKDSTKP--ISEVLSEM 95 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEE-EEC----------SCGGGHHHHHHHTCSEEECGGGCSSC--HHHHHHHH
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEE-Eec----------CcHHHHHHHHhcCCcEEECccccchH--HHHHHHHh
Confidence 78899999999999999999999996 566 777 566676555443221 1111111000 0111
Q ss_pred cccCceEEeeCCccCcccccchhcc---CceEEEec
Q psy14499 131 WSIPCDILIPAAIEDQITINNANNV---TAKIILEG 163 (262)
Q Consensus 131 l~~~~DIlipaa~~~~it~e~a~~~---~~kiIve~ 163 (262)
....+|+.|+|+.......+-...+ ..++|.=|
T Consensus 96 ~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG 131 (176)
T d1d1ta2 96 TGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVG 131 (176)
T ss_dssp HTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred ccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEE
Confidence 1357999999987554333333333 24555544
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.023 Score=46.43 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|+.++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~-~~~ 36 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAV-LLD 36 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 4799999999997 6699999999999999988 666
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.59 E-value=0.031 Score=46.02 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=38.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv-~~~----------r~~~~l~~~~~~ 47 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVI-GTA----------TSENGAQAISDY 47 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEE----------SSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEe----------CCHHHHHHHHHH
Confidence 589999999996 6799999999999999998 777 466666666554
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.58 E-value=0.0072 Score=44.93 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=57.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-c---cC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-S---IP 134 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~---~~ 134 (262)
+.|+|.|||.+|+.+++.|.+.+ ++ |.| .|++.........-.+- +.+. + ..+.| . .+
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~-vi~----------~d~~~~~~~~~~~~~~i-~Gd~---~-~~~~L~~a~i~~ 62 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VF-VLA----------EDENVRKKVLRSGANFV-HGDP---T-RVSDLEKANVRG 62 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EE-EEE----------SCTTHHHHHHHTTCEEE-ESCT---T-SHHHHHHTTCTT
T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CE-EEE----------cchHHHHHHHhcCcccc-cccc---C-CHHHHHHhhhhc
Confidence 46899999999999999996554 44 445 35555544443211100 0011 1 12222 1 47
Q ss_pred ceEEeeCCccCcccc---cchhcc--CceEEEecCCCCCCHHHHHHHHHCCC
Q psy14499 135 CDILIPAAIEDQITI---NNANNV--TAKIILEGANGPTTTEADDILRDKGI 181 (262)
Q Consensus 135 ~DIlipaa~~~~it~---e~a~~~--~~kiIve~AN~p~t~ea~~~l~~rgi 181 (262)
|+.++-++..+..|- ..++++ ..++|+..- +++-.+.|++-|+
T Consensus 63 A~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~G~ 110 (129)
T d2fy8a1 63 ARAVIVNLESDSETIHCILGIRKIDESVRIIAEAE----RYENIEQLRMAGA 110 (129)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHCSSSCEEEECS----SGGGHHHHHHHHC
T ss_pred CcEEEEeccchhhhHHHHHHHHHHCCCceEEEEEc----CHHHHHHHHHCCC
Confidence 899998886544443 333344 455666654 3455566677665
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.042 Score=45.36 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+++.|+.++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~-l~~----------r~~~~l~~~~~ 49 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLV-LWD----------INKHGLEETAA 49 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 4799999999998 5599999999999999988 788 57777666654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.081 Score=38.76 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=35.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.++++|+|.|.+|..+|..|.++|.+|. +.+..-.+. | .+|++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vt-ii~~~~~~l-~-~~d~e 65 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVT-VVEFQPQIG-A-SMDGE 65 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS-S-SSCHH
T ss_pred CCeEEEECCCchHHHHHHHHHhhCccee-EEEeccccc-h-hhhhh
Confidence 4799999999999999999999999988 777655444 3 37765
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.51 E-value=0.031 Score=46.31 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=40.4
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.+
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~~~~ 50 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVA-IAD----------INLEAARATAAEIG 50 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEE-EEE----------SCHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHhC
Confidence 478999999997 7799999999999999988 777 57777777766543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.022 Score=47.07 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=36.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi-~~~----------r~~~~l~~~~~ 48 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVI-ATD----------INESKLQELEK 48 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHGGGGG
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEe----------CCHHHHHHHHh
Confidence 89999999986 7899999999999999998 666 45666555443
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.06 Score=36.79 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=34.0
Q ss_pred HHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.+.+...++.+|+|.|. |.||..+.++++..|++|++++-
T Consensus 23 ~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~ 64 (77)
T d1o8ca2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG 64 (77)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC
Confidence 344555557889999775 99999999999999999998875
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.44 E-value=0.045 Score=45.39 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .|.+++.+..+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 47 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIA-LLD----------MNREALEKAEA 47 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 589999999997 6699999999999999987 777 46666655543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.056 Score=39.24 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.++|+|+|.|.+|..+|..|.++|.+|. +.+....+. ..+|++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vt-lve~~~~~l--~~~d~~ 63 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAKTH-LFEMFDAPL--PSFDPM 63 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSS--TTSCHH
T ss_pred CCEEEEECCChhhHHHHHHhhccccEEE-EEeecchhh--hhcchh
Confidence 4799999999999999999999999987 777655444 236764
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.23 E-value=0.058 Score=44.27 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=38.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.|++++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~-~~~----------r~~~~l~~~~~~~ 49 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLV-ACD----------IEEGPLREAAEAV 49 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHc
Confidence 589999999997 6699999999999999988 777 5677777666543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.21 E-value=0.04 Score=45.77 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 50 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIH-TCA----------RNEYELNECLS 50 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 789999999997 6699999999999999988 666 46666655543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.09 E-value=0.054 Score=44.65 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhc
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFT 112 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~ 112 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~-~~~----------r~~~~~~~~~~~~ 50 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVV-FGD----------ILDEEGKAMAAEL 50 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHHT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHh
Confidence 479999999997 6699999999999999987 777 5677777766553
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=94.09 E-value=0.073 Score=39.01 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=36.4
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
+.++++|+|+|.|.+|..+|..|.+.|.+|. +.+....+.. .-+|.+
T Consensus 27 ~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vt-lie~~~~~l~-~~~d~~ 73 (123)
T d1nhpa2 27 DPEVNNVVVIGSGYIGIEAAEAFAKAGKKVT-VIDILDRPLG-VYLDKE 73 (123)
T ss_dssp CTTCCEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSTTT-TTCCHH
T ss_pred ccCCCEEEEECChHHHHHHHHHhhccceEEE-EEEecCcccc-cccchh
Confidence 4577899999999999999999999999987 6665443332 236664
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.08 E-value=0.078 Score=38.25 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
..++++|+|.|.+|..+|..|.+.|.+|. +.+....+. | .+|.+
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vt-lve~~~~il-~-~~d~~ 63 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGAQVS-VVEARERIL-P-TYDSE 63 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHH
T ss_pred CCCeEEEECCCHHHHHHHHHHhhcccceE-EEeeecccc-c-cccch
Confidence 45899999999999999999999999977 777655554 2 36754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.08 E-value=0.067 Score=40.41 Aligned_cols=74 Identities=23% Similarity=0.205 Sum_probs=41.9
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCC-CCceecCCCccccccCc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDF-NEGEKINDSKEFWSIPC 135 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~-~~~~~~~~~~~il~~~~ 135 (262)
+||+|+|.|+||+.++..|...+ -.++ ..| +|.+++.......-.-..+ +.....++..+-+ .++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~-L~D----------i~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~-~~a 68 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMV-LID----------VDKKRAEGDALDLIHGTPFTRRANIYAGDYADL-KGS 68 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEE-EEC----------SSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGG-TTC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEE-EEe----------cccccccchhccccccccccccccccCCcHHHh-cCC
Confidence 58999999999999998887765 3555 667 5555443222110000011 1122222122223 589
Q ss_pred eEEeeCCcc
Q psy14499 136 DILIPAAIE 144 (262)
Q Consensus 136 DIlipaa~~ 144 (262)
||++=++..
T Consensus 69 divvitag~ 77 (140)
T d1a5za1 69 DVVIVAAGV 77 (140)
T ss_dssp SEEEECCCC
T ss_pred CEEEEeccc
Confidence 999888754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=94.03 E-value=0.04 Score=45.54 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=37.7
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~~~~~~~~ 49 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVM-ITG----------RHSDVGEKAAKS 49 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHH
Confidence 489999999996 6799999999999999987 777 466666665543
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.94 E-value=0.062 Score=44.60 Aligned_cols=46 Identities=33% Similarity=0.426 Sum_probs=38.3
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHh
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTF 111 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~ 111 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~~~~~~~~ 49 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVV-IAD----------IADDHGQKVCNN 49 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHH
Confidence 489999999996 6699999999999999988 777 567776666554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=93.85 E-value=0.057 Score=44.65 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..++.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------~~~~~~~~~~~~~~ 51 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVA-FSD----------INEAAGQQLAAELG 51 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEC----------SCHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHhC
Confidence 489999999996 6699999999999999987 777 57777777766543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.056 Score=44.56 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++||+++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~~~~~~~ 45 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVA-LVD----------WNLEAGVQCKA 45 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 46899999997 6699999999999999988 777 57777666554
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.76 E-value=0.083 Score=38.48 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.++|+|+|.|.+|..+|..|.+.|.+|. +.++.-.+. | ++|++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~il-~-~~d~~ 64 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSY-IFARGNRIL-R-KFDES 64 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEE-EECSSSSSC-T-TSCHH
T ss_pred CCEEEEECCchHHHHHHHHHHhccccce-eeehhcccc-c-cccHH
Confidence 5799999999999999999999999988 777655554 2 36764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.04 Score=43.65 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=32.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+.++|+|+|.|..|..+|..|.+.|++|+ +.|.
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vt-l~E~ 74 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVT-LFDA 74 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceE-EEec
Confidence 4578999999999999999999999999988 8875
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.75 E-value=0.035 Score=46.22 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.1
Q ss_pred CCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeC
Q psy14499 53 NLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 53 g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++|+|++++|.|.+ -+|+++|+.|.+.|++|+ +++
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vv-i~~ 41 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEIL-VGT 41 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEE-EEE
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEe
Confidence 458999999999985 499999999999999998 765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.74 E-value=0.055 Score=45.17 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .|.+++.+..+
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 46 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVT-ITG----------RNEDRLEETKQ 46 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 378999999997 6699999999999999988 777 56666655543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.74 E-value=0.077 Score=40.62 Aligned_cols=33 Identities=27% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.|.+|+|+|.|.+|...++++...|++.|.++|
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~ 60 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEc
Confidence 678999999999999999999999987776777
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.71 E-value=0.051 Score=44.24 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=31.3
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-..++|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~-vlE~ 61 (370)
T d2iida1 27 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVT-VLEA 61 (370)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCEEE-EECS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCCCEE-EEeC
Confidence 3466899999999999999999999999988 8875
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.053 Score=44.90 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=37.2
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
++|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~~~~~~~ 53 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVV-VSD----------INADAANHVVD 53 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 3689999999997 6799999999999999988 777 46666555443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.65 E-value=0.023 Score=47.12 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++++||+++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~ 40 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIY 40 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEE
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE
Confidence 4789999999997 5699999999999999988 666
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.065 Score=44.32 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.++++.++|.|. +.+|.++|+.|.+.|++|+ ++| .|.+++.+..+
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv-~~~----------r~~~~l~~~~~ 52 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVV-GCA----------RTVGNIEELAA 52 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 389999999997 6799999999999999988 666 46666666543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.64 E-value=0.042 Score=43.58 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..++|+|+|.|-+|..+|..|.+.|++|+ |.|.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~-vier 37 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVH-ILAR 37 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEE-EEeC
Confidence 35689999999999999999999999987 8874
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.57 E-value=0.06 Score=44.82 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~-l~~----------r~~~~l~~~~~ 47 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVT-ITG----------RSSERLEETRQ 47 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 478999999997 6799999999999999988 777 46666655544
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.017 Score=47.50 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+..+|+|+|.|.+|..++..|.+.|.+-+.+.|.
T Consensus 28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 62 (247)
T d1jw9b_ 28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF 62 (247)
T ss_dssp HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 57789999999999999999999999977778884
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.40 E-value=0.089 Score=43.50 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYV 109 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~ 109 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~l~~~~ 45 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLS-LVD----------VSSEGLEASK 45 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHH
Confidence 378999999997 5699999999999999987 887 5666655443
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=93.39 E-value=0.054 Score=44.29 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCeEEEEcC-CH--HHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GN--VGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~--VG~~~a~~L~~~g~~vv~V~D 89 (262)
|+|++++|.|. |+ +|+++|+.|.+.|++|+ +++
T Consensus 4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vi-l~~ 39 (268)
T d2h7ma1 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLV-LTG 39 (268)
T ss_dssp TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEE-EEe
Confidence 68999999996 65 99999999999999987 665
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.25 E-value=0.066 Score=44.37 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=36.4
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
|+|++++|.|. +.+|+++|+.|.+.|++|+ +++ .+.+++.+..+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vi-l~~----------r~~~~l~~~~~ 56 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVV-VTA----------RSKETLQKVVS 56 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 79999999997 5599999999999999998 555 46666666544
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.25 E-value=0.066 Score=40.08 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYN 96 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~ 96 (262)
.|+||+|+|.|.+|..+|..|.+.+ .+|+ +.|..-..+.
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vt-lie~~~~~~~ 41 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVT-LIEPNTDYYT 41 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSCSCEEC
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEE-EEECCCcccc
Confidence 4899999999999999999999876 5766 6676544443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.093 Score=44.39 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vv-i~~----------r~~~~l~~~~~ 54 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVV-IAS----------RKLERLKSAAD 54 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 379999999997 6699999999999999988 777 56666655543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.13 E-value=0.11 Score=40.52 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=47.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCC----ceec--CCCccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNE----GEKI--NDSKEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~----~~~~--~~~~~il~ 132 (262)
++|+|+|.|+.|.++|..|.+.|.+|. +..+ -.|.+.+....+. +.-..|+. .... ++.++.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~-l~~r--------~~~~~~~~~i~~~-~~~~~~~~~~~~~~i~~~~~~~~~~- 69 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVR-IWGT--------EFDTEILKSISAG-REHPRLGVKLNGVEIFWPEQLEKCL- 69 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEE-EECC--------GGGHHHHHHHHTT-CCBTTTTBCCCSEEEECGGGHHHHH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEE-EEEe--------cccHHHHHHHhhh-hhhhhhcchhccccccccccHHHHH-
Confidence 589999999999999999999999887 4321 0344444444332 22122211 1111 1112223
Q ss_pred cCceEEeeCCccCccc
Q psy14499 133 IPCDILIPAAIEDQIT 148 (262)
Q Consensus 133 ~~~DIlipaa~~~~it 148 (262)
.++|+++-|.+...+.
T Consensus 70 ~~ad~Ii~avps~~~~ 85 (180)
T d1txga2 70 ENAEVVLLGVSTDGVL 85 (180)
T ss_dssp TTCSEEEECSCGGGHH
T ss_pred hccchhhcccchhhhH
Confidence 5899999998875553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.11 E-value=0.1 Score=40.55 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=36.1
Q ss_pred HHHHhCCCCCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 48 IASKINLNIINSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 48 ~~~~~g~~l~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.+.|...++.+|+|+| .|.||..++++.+..|++|++++-+
T Consensus 14 ~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s 57 (167)
T d1tt7a2 14 RLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN 57 (167)
T ss_dssp HHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC
Confidence 355567766788899999 5999999999999999999988763
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.09 E-value=0.15 Score=37.20 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
..++++|+|.|.+|..+|..|.++|.+|. +...+ .+. .++|.+
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vt-ii~~~-~~l--~~~D~~ 61 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLDVT-VMVRS-ILL--RGFDQD 61 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEE-EEESS-SSS--TTSCHH
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCeEE-EEEec-hhh--ccCCHH
Confidence 44699999999999999999999999988 44443 222 347775
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.07 E-value=0.096 Score=41.05 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=34.3
Q ss_pred HHHhCCCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 49 ASKINLNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 49 ~~~~g~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++..+...++.+|+|+|. |.||..++++.+..|++|++++.
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~ 64 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG 64 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec
Confidence 455676667778888775 99999999999999999998876
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=93.07 E-value=0.051 Score=44.60 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCCCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 53 NLNIINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 53 g~~l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..+|+|++++|.|.. .+|+++|+.|.+.|++|+ ++|.
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~-i~~~ 42 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVA-LSYQ 42 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEE-EEES
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 358999999999974 499999999999999987 7663
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=93.00 E-value=0.12 Score=42.26 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
.|+|++++|.|. +.+|+++|+.|.+.|++|+ +++ .+.+++.+..++.+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~-~~~----------r~~~~~~~~~~~~~ 50 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLV-AVD----------REERLLAEAVAALE 50 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHHTCC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHHHcC
Confidence 378999999997 5699999999999999998 666 46677777666543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.00 E-value=0.15 Score=38.98 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc--
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il-- 131 (262)
.|.+|+|+| .|.||..++++.+..|++|+++.. +.+++...++. |. +-+|.+... .+++.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~-----------s~~k~~~~~~l-Ga~~vi~~~~~d~---~~~v~~~ 92 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG-----------TAQKAQSALKA-GAWQVINYREEDL---VERLKEI 92 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES-----------SHHHHHHHHHH-TCSEEEETTTSCH---HHHHHHH
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeeccc-----------chHHHHHHHhc-CCeEEEECCCCCH---HHHHHHH
Confidence 578999995 566999999999999999995544 45555444432 21 111111110 01222
Q ss_pred --ccCceEEeeCCccCcccccchhcc--CceEEE-ecCCCCCCHHHHHHHHHCCCeE
Q psy14499 132 --SIPCDILIPAAIEDQITINNANNV--TAKIIL-EGANGPTTTEADDILRDKGIIL 183 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~e~a~~~--~~kiIv-e~AN~p~t~ea~~~l~~rgi~~ 183 (262)
...+|++++|...... ....+.+ ..+++. .....+..+.-...+..++..+
T Consensus 93 t~g~g~d~v~d~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~ 148 (179)
T d1qora2 93 TGGKKVRVVYDSVGRDTW-ERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLY 148 (179)
T ss_dssp TTTCCEEEEEECSCGGGH-HHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCE
T ss_pred hCCCCeEEEEeCccHHHH-HHHHHHHhcCCeeeecccccCCccccchhhhhccceEE
Confidence 2468999999865533 2333333 455544 3345544433334444554434
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.92 E-value=0.082 Score=40.59 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
+.++|+|+|.|+||+.+|..|...+. .++ +.|
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D 38 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVV-LYD 38 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEE-EEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEE-EEE
Confidence 67899999999999999988887774 655 767
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.92 E-value=0.42 Score=34.65 Aligned_cols=100 Identities=17% Similarity=0.249 Sum_probs=60.9
Q ss_pred CeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccC
Q psy14499 59 SKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIP 134 (262)
Q Consensus 59 ~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~ 134 (262)
++|+|+|. ++.|..+.+.|.+.|++|..| ||.+ .++.++ ..+.+..++- .+
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pV--------nP~~-------------~~i~G~---~~y~sl~~lp-~~ 56 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPV--------NPNY-------------DEIEGL---KCYRSVRELP-KD 56 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTTC-------------SEETTE---ECBSSGGGSC-TT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEE--------cccc-------------ccccCc---cccccchhcc-cc
Confidence 68999995 789999999999999998865 2321 112221 1222122222 46
Q ss_pred ceEEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 135 CDILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 135 ~DIlipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.|+.+-|.+....- -+.+.....|.+.- .-+...+++.+.++++|+.++
T Consensus 57 ~D~vvi~vp~~~~~~~l~~~~~~g~k~v~~-~~g~~~~~~~~~a~~~gi~vi 107 (116)
T d1y81a1 57 VDVIVFVVPPKVGLQVAKEAVEAGFKKLWF-QPGAESEEIRRFLEKAGVEYS 107 (116)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCEEEE-CTTSCCHHHHHHHHHHTCEEE
T ss_pred ceEEEEEeCHHHHHHHHHHHHhcCCceEEe-ccchhhHHHHHHHHHcCCEEE
Confidence 77777776543321 12333445553332 123468899999999999874
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.88 E-value=0.21 Score=37.71 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=24.5
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
++|+|+|.|+||..+|-.|...+. .++ ..|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elv-L~D 32 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIA-LVD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEE-EEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEE-EEe
Confidence 589999999999999998887663 354 667
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.15 Score=37.21 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.++++|+|.|.+|..+|..|.+.|.+|+ +.+..-.+. | ++|.+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vt-lv~~~~~~l-~-~~d~~ 64 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSKTS-LMIRHDKVL-R-SFDSM 64 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSSSC-T-TSCHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcEEE-EEeeccccc-c-chhhH
Confidence 4799999999999999999999999987 777654444 2 36765
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.78 E-value=0.067 Score=42.85 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..||+|+|.|--|..+|..|.+.|++|+ |.+.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~-VlEa 36 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVT-LLEA 36 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEE-EECS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEE-EEeC
Confidence 56789999999999999999999999987 8764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.73 E-value=0.047 Score=43.48 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=28.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++|+|+|.|..|..+|..|.+.|++|+ |.+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~-vlE~ 31 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAV-LLES 31 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEE-EECS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEE-EEec
Confidence 579999999999999999999999987 8875
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.67 E-value=0.1 Score=43.14 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+||.++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 47 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVT-ITG----------RHAERLEETRQ 47 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 478999999986 7799999999999999987 777 56666655544
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.55 E-value=0.17 Score=36.30 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.+++|+|+|.|.+|..+|..|.+.|.++. +.+..-.+. .++|++
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt-~i~~~~~~l--~~~d~~ 64 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATGRRTV-MLVRTEPLK--LIKDNE 64 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCTTT--TCCSHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcchhhe-Eeeccchhh--cccccc
Confidence 57899999999999999999999999987 665433332 257764
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.17 Score=38.07 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=27.4
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCE
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAK 83 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~ 83 (262)
+....+++|+|+|.|++|.-+|+.+.+.|++
T Consensus 24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~ 54 (162)
T d1ps9a2 24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 54 (162)
T ss_dssp SCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred CccccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence 4556789999999999999999999998864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=92.46 E-value=0.18 Score=37.77 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
+||+|+|.|+||+.++..|...+. .++ ..|
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~-L~D 32 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELV-LLD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEE-Eec
Confidence 589999999999999999988773 554 667
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.41 E-value=0.38 Score=40.99 Aligned_cols=135 Identities=18% Similarity=0.186 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcC
Q psy14499 35 KATGRGVFIIGSKIASKINLNIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 35 ~aTg~Gv~~~~~~~~~~~g~~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g 113 (262)
..|++=...+---+++++..+ .-.+++|+|.|..++.-++.|.. +..+-|-|.+ .+.+...++.++..
T Consensus 103 ~lT~~RTaA~sala~~~la~~-~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~----------r~~e~~~~~~~~~~ 171 (320)
T d1omoa_ 103 YTTSLRTGAAGGIAAKYLARK-NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYD----------VREKAAKKFVSYCE 171 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEEC----------SSHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHhccC-CccEEEEecCcccHHHHHHHHHHHhhhhhccccc----------CCHHHHHHHHHHHH
Confidence 344443333333345566443 45789999999999999998876 4555555666 35555544433211
Q ss_pred CccCCCCceecCCCccccccCceEEeeCCcc--CcccccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEecc
Q psy14499 114 SIKDFNEGEKINDSKEFWSIPCDILIPAAIE--DQITINNANNVTAKIILEGANGPTTTEADDILRDKGIILAPD 186 (262)
Q Consensus 114 ~~~~~~~~~~~~~~~~il~~~~DIlipaa~~--~~it~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iPD 186 (262)
.. .. .. ..+ +++.. .++||++-|+.+ -++..+..+ -.+.+..=|++.|-..|.+..+.++.-.|+-|
T Consensus 172 ~~-~~-~~-~~~-~~~a~-~~aDiV~taT~s~~P~~~~~~l~-~G~hv~~iGs~~p~~~Eld~~~~~~a~~~vdd 240 (320)
T d1omoa_ 172 DR-GI-SA-SVQ-PAEEA-SRCDVLVTTTPSRKPVVKAEWVE-EGTHINAIGADGPGKQELDVEILKKAKIVVDD 240 (320)
T ss_dssp HT-TC-CE-EEC-CHHHH-TSSSEEEECCCCSSCCBCGGGCC-TTCEEEECSCCSTTCCCBCHHHHHTEEEEESC
T ss_pred hc-CC-cc-ccc-hhhhh-ccccEEEEeccCcccccchhhcC-CCCeEeecCCccccccccCHHHhhcCceEecC
Confidence 10 11 11 122 44444 589999999864 445444332 25778888999997777665566665555533
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.32 E-value=0.13 Score=41.71 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
|++++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~-~~~ 35 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVT-ICA 35 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 78999999997 6699999999999999988 666
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.21 E-value=0.49 Score=36.01 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=61.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccc-ccC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFW-SIP 134 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il-~~~ 134 (262)
...+|+|+|+|.+|+.-++.|.+. +..+++++|. .+++ ....+......+ .++++ +.+
T Consensus 6 ~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~----~~~~---------------~~~~~~~~~~~~-~~e~l~~~~ 65 (172)
T d1lc0a1 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF----VSRR---------------ELGSLDEVRQIS-LEDALRSQE 65 (172)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE----ECSS---------------CCCEETTEEBCC-HHHHHHCSS
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec----cchH---------------HHHHhhccCcCC-HHHHHhCCC
Confidence 457999999999999988887653 2223334431 1111 001111112222 44555 458
Q ss_pred ceEEeeCCccCcccccchhcc---CceEEEecCCCCCCHHHHHH---HHHCCCeEecccc
Q psy14499 135 CDILIPAAIEDQITINNANNV---TAKIILEGANGPTTTEADDI---LRDKGIILAPDVI 188 (262)
Q Consensus 135 ~DIlipaa~~~~it~e~a~~~---~~kiIve~AN~p~t~ea~~~---l~~rgi~~iPD~~ 188 (262)
+|+++-|++.+. +.+.+... +..+++|=.=.....|++++ .+++|+.+.-.+.
T Consensus 66 iD~V~I~tp~~~-H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~ 124 (172)
T d1lc0a1 66 IDVAYICSESSS-HEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHV 124 (172)
T ss_dssp EEEEEECSCGGG-HHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECG
T ss_pred cchhhhcccccc-cccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecH
Confidence 999999987543 34443332 45588875433334555544 3678877654443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.16 E-value=0.13 Score=42.31 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=36.6
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
+|+++.++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 52 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVI-CIS----------RTQKSCDSVVD 52 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEE-EEE----------SSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEE----------CCHHHHHHHHH
Confidence 688999999997 6799999999999999987 777 45666555543
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.96 E-value=0.21 Score=36.33 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=36.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
-.++++|+|.|.+|..+|..|.++|.+|. |..+...+. | ++|.+.
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vt-vi~~~~~~l-~-~~d~~~ 68 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVT-VVEFASEIV-P-TMDAEI 68 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHHH
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCCeEE-EEEEccccC-c-hhhhcc
Confidence 45799999999999999999999999988 776655554 3 477753
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=91.93 E-value=0.12 Score=39.78 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCHHHHH-HHHHHHHC-CCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSV-AANLFFKA-GAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~-~a~~L~~~-g~~vv~V~D 89 (262)
+..||+|+|.|++|+. +.++|... ...+++++|
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas 37 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVG 37 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEEC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEe
Confidence 3479999999999986 56777664 678999998
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.93 E-value=0.033 Score=41.43 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHH-HCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFF-KAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~-~~g~~vv~V~D 89 (262)
..+|+|.|.|+.|+.+++.+. +.+++++|+.|
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD 35 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFD 35 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence 468999999999999998764 35899999998
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.89 E-value=0.26 Score=37.49 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc---
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW--- 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il--- 131 (262)
.|.+|+|+|.|.+|..++..+...|+..|.++| .+.+++...++ .|. +-++.+.... ..++.
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~----------~~~~rl~~a~~-~GAd~~in~~~~~~~--~~~~~~~~ 94 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD----------LNPDKFEKAKV-FGATDFVNPNDHSEP--ISQVLSKM 94 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC----------SCGGGHHHHHH-TTCCEEECGGGCSSC--HHHHHHHH
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeec----------chHHHHHHHHH-cCCcEEEcCCCcchh--HHHHHHhh
Confidence 678999999999999999999999886665777 45555544443 331 1111000000 01111
Q ss_pred -ccCceEEeeCCccCcccccchhcc----CceEEEecCCCC
Q psy14499 132 -SIPCDILIPAAIEDQITINNANNV----TAKIILEGANGP 167 (262)
Q Consensus 132 -~~~~DIlipaa~~~~it~e~a~~~----~~kiIve~AN~p 167 (262)
...+|++++++..... .+++..+ +..+++-+...+
T Consensus 95 ~~~G~d~vid~~G~~~~-~~~a~~~~~~g~~~~~~~g~~~~ 134 (175)
T d1cdoa2 95 TNGGVDFSLECVGNVGV-MRNALESCLKGWGVSVLVGWTDL 134 (175)
T ss_dssp HTSCBSEEEECSCCHHH-HHHHHHTBCTTTCEEEECSCCSS
T ss_pred ccCCcceeeeecCCHHH-HHHHHHHhhCCCcceeEEEecCC
Confidence 2469999999975332 2333222 244555655554
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.81 E-value=0.19 Score=41.17 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++|+|++++|.|. +.+|.++|+.|.+.|++|+ ++
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vv-i~ 36 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVV-VN 36 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EE
Confidence 5799999999986 6699999999999999998 54
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.78 E-value=0.5 Score=35.40 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=62.8
Q ss_pred CCCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+-++|+|+|. ++.|..+++.|.++|++|+.| ||. .+.+.+ ...+++..++-
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pV--------nP~-------------~~~i~G---~~~~~sl~dlp- 72 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--------NPK-------------YEEVLG---RKCYPSVLDIP- 72 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--------CTT-------------CSEETT---EECBSSGGGCS-
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEE--------CCc-------------ccccCC---CcccccccccC-
Confidence 4679999996 679999999999999998755 222 122222 12233223332
Q ss_pred cCceEEeeCCccCccc--ccchhccCceEEEecCCCCCCHHHHHHHHHCCCeEe
Q psy14499 133 IPCDILIPAAIEDQIT--INNANNVTAKIILEGANGPTTTEADDILRDKGIILA 184 (262)
Q Consensus 133 ~~~DIlipaa~~~~it--~e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~i 184 (262)
.+.|+++-+.....+- -+.+....+|.|.= --+..++++.+.++++|+.++
T Consensus 73 ~~iD~v~i~vp~~~~~~~~~e~~~~g~k~v~~-~~G~~~ee~~~~a~~~gi~vi 125 (139)
T d2d59a1 73 DKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWF-QYNTYNREASKKADEAGLIIV 125 (139)
T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHHTCSEEEE-CTTCCCHHHHHHHHHTTCEEE
T ss_pred ccceEEEEEeCHHHHHHHHHHHHHhCCCEEEE-eccccCHHHHHHHHHCCCEEE
Confidence 4567776665543221 12333445664442 222458999999999999875
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.70 E-value=0.088 Score=43.59 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vv-i~~ 49 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVI-VNY 49 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEe
Confidence 3699999999995 8899999999999999988 666
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.58 E-value=0.26 Score=35.72 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.++++|+|.|.+|-.+|..|.+.|.+|+ +.+..-.+. ++|.+
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vt-lv~~~~~l~---~~d~~ 73 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVK-LIHRGAMFL---GLDEE 73 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEE-EECSSSCCT---TCCHH
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEE-EEecccccc---CCCHH
Confidence 4799999999999999999999999988 777544443 37765
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.58 E-value=0.087 Score=44.72 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.++|+|+|.|--|..+|..|.+.|.+|+ |.|.
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~-viEk 33 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVH-IIDQ 33 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEE-EEES
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEE-EEEC
Confidence 46899999999999999999999999988 8864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.56 E-value=0.088 Score=40.40 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=26.8
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
+|+|+|.|..|..+|..|.+.|. .|+ |.|.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~-vlE~ 32 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLL-ILEA 32 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEE-EECS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEE-EEEC
Confidence 69999999999999999999997 466 8775
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=91.48 E-value=0.12 Score=42.59 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=31.8
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|+|++|+|.|. +.+|+.+|+.|.+.|++++.+++
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r 37 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILD 37 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEE
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4789999999997 56999999999999999886665
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.38 E-value=0.07 Score=43.73 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=29.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
.+|+|+|.|.+|..+|..|.+.|.+|+ |.|.+
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~-vlE~~ 34 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNV-ILERQ 34 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEE-EECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEE-EEeCC
Confidence 479999999999999999999999988 88754
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=91.35 E-value=0.034 Score=42.23 Aligned_cols=30 Identities=43% Similarity=0.510 Sum_probs=24.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
++|+|+|.|+||..+|-.|...+. .++ ..|
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~-l~D 32 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIV-LLD 32 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEE-EEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEE-EEe
Confidence 589999999999999998887764 544 556
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.29 E-value=0.28 Score=37.29 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
..+|+|+|.|+||+.+|-+|...+..=+.+.|
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D 34 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFD 34 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 36899999999999999888887743333666
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=91.18 E-value=0.15 Score=43.15 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
++|++|+|.|. |-+|+++++.|.+.|++|++..+
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR 43 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR 43 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence 57999999996 88999999999999999997654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.18 Score=39.50 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=29.4
Q ss_pred CCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQG-FGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqG-fG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.-+||+|.| -|.+|+++++.|.+.|++|++++.
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R 35 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR 35 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence 457999999 599999999999999999998764
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.14 E-value=0.38 Score=35.18 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
..++++|+|.|.+|..+|..|.++|.+|. +.+....+. | .+|.+-
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vt-ive~~~~il-~-~~d~~~ 69 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLD-VVEMMDGLM-Q-GADRDL 69 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEE-EECSSSSSS-T-TSCHHH
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCCEEE-EEEeecccc-c-cchhhH
Confidence 45799999999999999999999999988 777655554 3 367653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.01 E-value=0.61 Score=35.10 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
++|+|+|. |+||+.+|..|...+. .++ +.|
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D 33 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIG 33 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccc-ccc
Confidence 57999995 9999999999988873 544 666
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.12 Score=39.60 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...|+|+|.|..|..+|..|.+.|.+|+ |.|+
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G~~V~-vlE~ 36 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDGKKVL-HIDK 36 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEE-EEcC
Confidence 4568999999999999999999999977 8886
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.96 E-value=0.12 Score=41.85 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=28.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|+|+|.|-+|.++|..|.+.|.+|+ |.|+
T Consensus 5 ~DvvIIGaGi~Gls~A~~La~~G~~V~-vlE~ 35 (276)
T d1ryia1 5 YEAVVIGGGIIGSAIAYYLAKENKNTA-LFES 35 (276)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEE-EEeC
Confidence 469999999999999999999999988 8885
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.11 Score=42.33 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCC---HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFG---NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG---~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|++++|.|.. .+|+++|+.|.+.|++|+ ++|.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~-i~~~ 39 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 39 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEE-EEeC
Confidence 789999999975 388999999999999988 6663
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=90.95 E-value=0.11 Score=42.66 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCCCeEEEEcC-C--HHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGF-G--NVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGf-G--~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|++++|.|. | -+|.++|+.|.+.|++|+ ++|.
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~-i~~r 39 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLA-FTYL 39 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEE-EEES
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 78999999996 4 499999999999999988 7773
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.88 E-value=0.12 Score=42.05 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.+|++++++|.|. +.+|+++|+.|.+.|++|+ ++|.
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~-~~~r 39 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVA-VTHR 39 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 3689999999997 5699999999999999998 5553
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.86 E-value=0.25 Score=39.67 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+||.|.|. |-+|+++++.|.+.|+.|+++.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~ 32 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTD 32 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEee
Confidence 68999997 9999999999999999999654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.68 E-value=0.34 Score=34.95 Aligned_cols=48 Identities=15% Similarity=0.389 Sum_probs=36.1
Q ss_pred CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 53 NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 53 g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
..+-..++++|+|.|.+|-.+|..|.++|.+|+ +....-.+. | ++|.+
T Consensus 17 ~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vt-iv~~~~~ll-~-~~d~e 64 (119)
T d3lada2 17 DFQNVPGKLGVIGAGVIGLELGSVWARLGAEVT-VLEAMDKFL-P-AVDEQ 64 (119)
T ss_dssp SCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEE-EEESSSSSS-T-TSCHH
T ss_pred CcccCCCeEEEECCChHHHHHHHHHHHcCCceE-EEEeecccC-C-cccch
Confidence 444456899999999999999999999999988 554333332 2 46765
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=90.51 E-value=0.18 Score=40.31 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
-..++|+|+|.|..|..+|..|.+.|+.++ |.|.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~-l~E~ 80 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVH-LTDT 80 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEE-EECS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhcccee-eEee
Confidence 478999999999999999999999999988 7764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.33 E-value=0.16 Score=42.00 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv-~~~ 38 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVV-VNY 38 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEe
Confidence 4689999999986 7799999999999999998 555
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.16 E-value=0.36 Score=35.54 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCcee
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i 94 (262)
..++++|+|.|.+|..+|..|.+.|.+|. +.+..-.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vt-vie~~~~~ 70 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVT-LLDTAARV 70 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSSST
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCccee-eeeecccc
Confidence 56899999999999999999999999977 77754333
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.15 E-value=1.9 Score=29.52 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=26.0
Q ss_pred CeEEEEcCCHHHH-HHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGS-VAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~-~~a~~L~~~g~~vv~V~D 89 (262)
+||=++|.|-.|. ++|++|.+.|+.|. .+|
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~Vs-GSD 32 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVY-GSN 32 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEE-EEe
Confidence 6788999988887 67999999999976 788
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=90.05 E-value=0.082 Score=40.95 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++++|+|+|-|+.|..+|..|.+.|.+++ |.|.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~-iie~ 36 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPV-LITG 36 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCE-EECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceE-EEEe
Confidence 56789999999999999999999999988 6653
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=89.98 E-value=0.2 Score=41.07 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.4
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~-~~~~ 37 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVA-LCDL 37 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 68999999995 7799999999999999987 7773
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.97 E-value=1.2 Score=30.90 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=27.9
Q ss_pred CCCeEEEEcCCHHH-HHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVG-SVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG-~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.+++=++|.|-.| +++|++|.+.|+.|. -+|.
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~Vs-GSD~ 40 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQIS-GSDI 40 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEE-EEES
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 56799999999999 455999999999977 7783
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.95 E-value=0.18 Score=40.19 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=27.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGA-KIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~-~vv~V~D~ 90 (262)
.+|+|+|.|.+|..+|..|.+.|. .|+ |.+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~-V~Er 33 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVT-LLES 33 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEE-EEES
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEE-EEeC
Confidence 589999999999999999999996 655 7765
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.78 E-value=0.57 Score=33.31 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHH
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKA---GAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~---g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
.+-..++++|+|.|.+|-.+|.+|.++ |.+|. +.+....+. | ++|++
T Consensus 14 l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vt-li~~~~~il-~-~~d~~ 63 (117)
T d1feca2 14 LDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVD-LAYRGDMIL-R-GFDSE 63 (117)
T ss_dssp CSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEE-EEESSSSSS-T-TSCHH
T ss_pred ccccCCeEEEECCChHHHHHHHHhHhhcccccccc-eeccccccc-c-cccch
Confidence 333458999999999999999988764 77776 666554444 2 47765
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.65 E-value=0.23 Score=40.56 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+++.++|.|. +.+|+++|+.|.+.|++|+ ++|.
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~-~~~~ 37 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIA-IADL 37 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 589999999997 6699999999999999988 6663
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.59 E-value=0.22 Score=42.11 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 54 LNIINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 54 ~~l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
++|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|..
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vv-i~d~~ 40 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVV-VNDLG 40 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE-EECCC
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEE-EEeCC
Confidence 3688999999997 5699999999999999988 88753
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.56 E-value=0.13 Score=40.65 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 56 IINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 56 l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++++|+|+|||+=|.+-|..|++-|..|+ |.=+
T Consensus 14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~-VGLr 47 (182)
T d1np3a2 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVT-VGLR 47 (182)
T ss_dssp HHTSCEEEECCSHHHHHHHHHHHHTTCCEE-EECC
T ss_pred HCCCEEEEEeeCcHhHHHHhhhhhcCCCEE-EEcC
Confidence 579999999999999999999999999887 6543
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.53 E-value=0.27 Score=39.28 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHH--------------------HCCCEEEEEeCCCcee
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFF--------------------KAGAKIVAIQDDKTTI 94 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~--------------------~~g~~vv~V~D~~G~i 94 (262)
.++.+++|+|+|-|||+.=+|+.|. +.|++-|.+..++|-.
T Consensus 35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~ 95 (216)
T d1lqta1 35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL 95 (216)
T ss_dssp CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence 4678999999999999999999887 5688777777665543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.41 E-value=0.88 Score=34.74 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=55.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCC--ccCCCCceecCCCcccc--
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRS--IKDFNEGEKINDSKEFW-- 131 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~--~~~~~~~~~~~~~~~il-- 131 (262)
+|.+|+|+|. |.||+.++++.+..|++|++++. +.+++...++ .|. +-.+.+... .+.++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~-----------~~~~~~~~~~-~Ga~~vi~~~~~~~---~~~~~~~ 93 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG-----------SDEKIAYLKQ-IGFDAAFNYKTVNS---LEEALKK 93 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES-----------SHHHHHHHHH-TTCSEEEETTSCSC---HHHHHHH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC-----------CHHHHHHHHh-hhhhhhcccccccH---HHHHHHH
Confidence 6899999998 78999999999999999998875 3444433333 231 011111100 01122
Q ss_pred --ccCceEEeeCCccCcccccchhcc--CceEEEec
Q psy14499 132 --SIPCDILIPAAIEDQITINNANNV--TAKIILEG 163 (262)
Q Consensus 132 --~~~~DIlipaa~~~~it~e~a~~~--~~kiIve~ 163 (262)
...+|++++|..... ..+..+.+ ..++|.=|
T Consensus 94 ~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 94 ASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp HCTTCEEEEEESSCHHH-HHHHGGGEEEEEEEEECC
T ss_pred hhcCCCceeEEecCchh-hhhhhhhccCCCeEEeec
Confidence 246999999986443 23334444 45566544
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.40 E-value=0.2 Score=41.05 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=29.3
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
|+|++++|.|. +.+|+++|+.|.+.|++|+ ++|
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~-~~~ 35 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIV-LNG 35 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEE-EEC
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEe
Confidence 68999999887 5699999999999999988 776
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.25 E-value=0.18 Score=42.39 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=27.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~ 91 (262)
+||+|+|.|..|..+|..|.+.| .+|+ |.+..
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~-vfEk~ 38 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEKAFDQVT-LFERR 38 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCCSEEE-EECSS
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCCCEE-EEECC
Confidence 68999999999999999998766 5877 87764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.24 E-value=0.14 Score=39.72 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=28.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.++|+|+|-|+.|..+|..|.+.|.+++ |.|
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~-vie 35 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPL-LFE 35 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCE-EEC
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEE-EEE
Confidence 5789999999999999999999999988 776
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.10 E-value=0.18 Score=42.50 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+++...|+|+|.|..|..+|..|.+.|..++ |.|.
T Consensus 4 p~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~-i~Ek 38 (298)
T d1w4xa1 4 PPEEVDVLVVGAGFSGLYALYRLRELGRSVH-VIET 38 (298)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CCCCCCEEEECccHHHHHHHHHHHhCCCCEE-EEEc
Confidence 5678899999999999999999999999987 8875
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=89.10 E-value=0.25 Score=41.37 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+++||.|.|. |-+|+++++.|.+.|+.|.++.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~ 39 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYS 39 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 7899999995 9999999999999999988665
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.03 E-value=0.28 Score=37.01 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=24.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCC-EEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGA-KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~-~vv~V~D 89 (262)
.+|+|+|. |+||+++|..|...+. .-+...|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD 33 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD 33 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence 37999995 9999999999988774 3333667
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=88.79 E-value=0.23 Score=39.49 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=28.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~-liEk 33 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVL-LLDK 33 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEE-EEeC
Confidence 468999999999999999999999988 8875
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.76 E-value=0.27 Score=39.55 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHH--------------------CCCEEEEEeCCCce
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFK--------------------AGAKIVAIQDDKTT 93 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~--------------------~g~~vv~V~D~~G~ 93 (262)
.++.+++|+|+|-|||+.=+|+.|.+ .|++=|.+..++|-
T Consensus 35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~ 94 (225)
T d1cjca1 35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 94 (225)
T ss_dssp CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence 36789999999999999999999987 47777778776664
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=88.71 E-value=0.39 Score=39.19 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=30.9
Q ss_pred CeE-EEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 59 SKI-SIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 59 ~~v-~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
||| +|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~-~~~----------r~~~~l~~~~~ 43 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVA-IAD----------YNDATAKAVAS 43 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 455 56676 5699999999999999987 777 46666655543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=88.56 E-value=0.17 Score=39.57 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..-|+|+|.|+.|..+|..+.++|.+|+ |.|.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~aa~~G~kV~-vie~ 34 (221)
T d1dxla1 3 ENDVVIIGGGPGGYVAAIKAAQLGFKTT-CIEK 34 (221)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEE-EEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEE-EEEe
Confidence 4579999999999999999999999988 7765
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.03 E-value=0.21 Score=39.13 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...|+|+|.|..|..+|..+.+.|.+|+ |.|.
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~-lie~ 36 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTA-CVEK 36 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEE-EEES
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEE-EEEe
Confidence 3568999999999999999999999988 7764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.99 E-value=0.25 Score=40.05 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.0
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|+|+|.|.+|..+|..|.+.|.+|+ |.|.
T Consensus 4 yDvvIIGaGi~Gls~A~~La~~G~~V~-viE~ 34 (281)
T d2gf3a1 4 FDVIVVGAGSMGMAAGYQLAKQGVKTL-LVDA 34 (281)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEE-EEeC
Confidence 358999999999999999999999988 7774
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.74 E-value=0.28 Score=41.95 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=26.8
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
|+||.|.|. |-+|+++++.|.+.|++|+++
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i 31 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV 31 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 689999996 999999999999999999854
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.50 E-value=0.35 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
-+.+|+|+|-|++|.-.|..+.+.|++.|.+.-
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~ 76 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVF 76 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence 567899999999999999999999998776653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.41 E-value=0.34 Score=39.86 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=27.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+||.|.|. |-+|+++++.|.+.|++|+++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r 32 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVA 32 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 68999996 99999999999999999997753
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.40 E-value=0.79 Score=36.20 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=91.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC---CceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCC---ccccc
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD---KTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDS---KEFWS 132 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~---~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~---~~il~ 132 (262)
+|+++.|...+|..+.+.|.+.|..|++|... .|.-.. ...+.++.++.+ +.-|. ...+.+. +.+.+
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~-----~~~~~~~a~~~~-i~~~~-~~~~~~~~~~~~i~~ 73 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAF-----YGSVARLAAERG-IPVYA-PDNVNHPLWVERIAQ 73 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------C-----CCCHHHHHHHHT-CCEEC-CSCCCSHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccc-----cCHHHHHHHHcC-Cccee-cccccchhhhhhhhh
Confidence 58999999999999999999999999988742 221111 112333333332 11110 0111101 12345
Q ss_pred cCceEEeeCCccCcccccchhccCceEE-EecCCCCC----CHHHHHHHHH---CCCeEeccccccc----hhhHHHHHH
Q psy14499 133 IPCDILIPAAIEDQITINNANNVTAKII-LEGANGPT----TTEADDILRD---KGIILAPDVITNA----GGVIVSYFE 200 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~e~a~~~~~kiI-ve~AN~p~----t~ea~~~l~~---rgi~~iPD~~aN~----GGvi~s~~E 200 (262)
.++|+++-+....++..+-....+..++ +=.+-.|- .|---.++.. .|+.+. ..+. |.++. ..+
T Consensus 74 ~~~Dlii~~g~~~ii~~~il~~~~~~~iN~H~slLP~yrG~~p~~wai~~g~~~~G~Tih---~i~~~iD~G~Il~-q~~ 149 (203)
T d2blna2 74 LSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLH---RMVKRADAGAIVA-QLR 149 (203)
T ss_dssp TCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEE---ECCSSTTCSCEEE-EEE
T ss_pred hcccceeeeecccchhcccchhhHHHHHHHhhhcchhhhhhhhhhhhhhcccccccceeE---EeeccCCCcccee-ecc
Confidence 7999999999888998887776654433 55665664 4544445432 245442 2222 33321 000
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14499 201 WVQNLSNLLWTEQEINLRLNNIICNAFDAIWELANT 236 (262)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~ 236 (262)
+ .-.-..+.+++..++.......+.++++.-..
T Consensus 150 ~---~i~~~~t~~~l~~k~~~~~~~l~~~~l~~i~~ 182 (203)
T d2blna2 150 I---AIAPDDIAITLHHKLCHAARQLLEQTLPAIKH 182 (203)
T ss_dssp E---ECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 00122456777777777666667666655544
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.36 E-value=0.29 Score=41.12 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=29.7
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.++|+|.|. |.+|+++++.|.+.|++|++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R 35 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH 35 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEEC
Confidence 4689999995 99999999999999999998874
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=87.24 E-value=0.96 Score=35.03 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=54.7
Q ss_pred CCCCeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCcccccc
Q psy14499 56 IINSKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSI 133 (262)
Q Consensus 56 l~~~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~ 133 (262)
-+..||+|+|. |-||+.+.++|.++ ...++.++-+ ...|-....+...... .+...... ..+....
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~-----~~aG~~~~~~~~~~~~------~~~~~~~~-~~~~~~~ 70 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTAD-----RKAGEQFGSVFPHLIT------QDLPNLVA-VKDADFS 70 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECS-----TTTTSCHHHHCGGGTT------SCCCCCBC-GGGCCGG
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEecc-----ccCCCccccccccccc------cccccchh-hhhhhhc
Confidence 36789999996 99999999999886 5677666531 2234444433222111 10111111 1222235
Q ss_pred CceEEeeCCccCcccccchhcc--CceEEEecCC
Q psy14499 134 PCDILIPAAIEDQITINNANNV--TAKIILEGAN 165 (262)
Q Consensus 134 ~~DIlipaa~~~~it~e~a~~~--~~kiIve~AN 165 (262)
++|+++-|.+ +.+..+.++.+ ..++|...+-
T Consensus 71 ~~Dvvf~alp-~~~s~~~~~~l~~~~~~v~~~~~ 103 (183)
T d2cvoa1 71 NVDAVFCCLP-HGTTQEIIKGLPQELKIVDLSAD 103 (183)
T ss_dssp GCSEEEECCS-SSHHHHHHHTSCSSCEEEECSST
T ss_pred ccceeeeccc-cchHHHHHHHHHhcCcccccchh
Confidence 8999998775 44455556555 3444444443
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=87.23 E-value=0.25 Score=40.57 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCE-EEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAK-IVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~-vv~V~D~ 90 (262)
+|+|+|.|-+|.++|..|.+.|.+ |+ |.|.
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~-liE~ 33 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNIT-VLDQ 33 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEE-EECS
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEE-EEeC
Confidence 799999999999999999999975 55 7774
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.22 E-value=0.23 Score=40.48 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=27.0
Q ss_pred EEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 61 ISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 61 v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~-VlE~ 30 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVV-VLEA 30 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEE-EEES
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEE-EEec
Confidence 8999999999999999999999988 8874
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.07 E-value=0.33 Score=38.23 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFK--AGAKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~--~g~~vv~V~D~~ 91 (262)
.||+|+|.|..|..+|+.|.+ .|+.|+ |.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~-v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVD-IYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEE-EECSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEE-EEeCC
Confidence 489999999999999999976 478887 88864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=86.97 E-value=0.22 Score=39.96 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=27.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
-+||+|.|. |.+|+++++.|.+.|++|+++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~ 34 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLV 34 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 478999996 9999999999999999998665
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.90 E-value=0.72 Score=37.46 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
||-++|.|. +.+|+++|+.|.+.|++|+ ++| .+.+++.+..+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~-i~~----------r~~~~l~~~~~ 44 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVF-VCA----------RGEEGLRTTLK 44 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEE----------CCHHHHHHHHH
Confidence 566677786 6699999999999999987 777 45665555443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=86.88 E-value=0.26 Score=39.89 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=28.6
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+.+||+|.|. |.+|+++++.|.+.|+.|++++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R 35 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFR 35 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3467999995 99999999999999999996654
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.58 E-value=0.39 Score=38.55 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+|++|+|.|. +.+|+++|+.|.+.|++|+.+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~ 32 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASI 32 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 5899999997 779999999999999998843
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.47 E-value=0.26 Score=38.47 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=28.0
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...|+|+|.|..|..+|..+.+.|.+|+ |.|.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~-iiE~ 33 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCA-LIEA 33 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEE-EEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEE-EEec
Confidence 3468999999999999999999999977 7664
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=86.46 E-value=1.1 Score=33.01 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=60.4
Q ss_pred CCCeEEEEcC----CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 57 INSKISIQGF----GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 57 ~~~~v~IqGf----G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+.++|+|+|. ++.|..+++.|.+.|+++.- ++|. .....+.+ ...+.+..++-
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~--------v~~~-----------~~~~~i~g---~~~~~~l~~i~- 68 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLP--------VNPR-----------FQGEELFG---EEAVASLLDLK- 68 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEE--------ECGG-----------GTTSEETT---EECBSSGGGCC-
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceE--------EEec-----------cccceeec---eecccchhhcc-
Confidence 4579999997 78999999999999998762 3321 00111211 12222122232
Q ss_pred cCceEEeeCCccCcccc--cchhccCceEEEecCCCCCCHHHHHHHHHCCCeEec
Q psy14499 133 IPCDILIPAAIEDQITI--NNANNVTAKIILEGANGPTTTEADDILRDKGIILAP 185 (262)
Q Consensus 133 ~~~DIlipaa~~~~it~--e~a~~~~~kiIve~AN~p~t~ea~~~l~~rgi~~iP 185 (262)
.+.|+.+-|......-+ +.+.+..+|.++=- -+..++|+.+..++.||.++-
T Consensus 69 ~~iD~v~v~~p~~~v~~~v~~~~~~g~k~i~~q-~G~~~~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 69 EPVDILDVFRPPSALMDHLPEVLALRPGLVWLQ-SGIRHPEFEKALKEAGIPVVA 122 (136)
T ss_dssp SCCSEEEECSCHHHHTTTHHHHHHHCCSCEEEC-TTCCCHHHHHHHHHTTCCEEE
T ss_pred CCCceEEEeccHHHHHHHHHHHHhhCCCeEEEe-cCccCHHHHHHHHHcCCEEEc
Confidence 46677776664322211 22333344433211 123578999999999998863
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=86.45 E-value=0.04 Score=39.53 Aligned_cols=37 Identities=3% Similarity=-0.092 Sum_probs=30.7
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDK 91 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~ 91 (262)
+.+|++|+|+|.|+-|.-+|..|.+...+++-+.-+.
T Consensus 29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence 5799999999999999999999988877766455443
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=86.39 E-value=1.1 Score=33.56 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=24.2
Q ss_pred CeEEEEc-CCHHHHHHHHHHHHCCC--EEEEEeC
Q psy14499 59 SKISIQG-FGNVGSVAANLFFKAGA--KIVAIQD 89 (262)
Q Consensus 59 ~~v~IqG-fG~VG~~~a~~L~~~g~--~vv~V~D 89 (262)
.+|+|+| .|+||+.+|-.|...+. .++ +.|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~-L~D 33 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVV-FVD 33 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEE-EEC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEE-EEe
Confidence 4799999 69999999999988774 344 666
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.35 E-value=0.32 Score=37.28 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCC-HHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCH-HHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 55 NIINSKISIQGFG-NVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNI-PKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 55 ~l~~~~v~IqGfG-~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~-~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
+++|++|+++|=| +|..++++.|..+|+++. ++- |.++.+ +++.+..++.... .....+...+.++.+
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~-~~~-------P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~ea~- 70 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVV-VAT-------PEGYEPDEKVIKWAEQNAAE-SGGSFELLHDPVKAV- 70 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEE-EEC-------CTTCCCCHHHHHHHHHHHHH-HTCEEEEESCHHHHT-
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEE-Eec-------ccccCCChHHHHHHHHhhhc-ccceEEEecCHHHHh-
Confidence 5789999999964 588999999999999987 544 444443 2333332221100 000112222234444
Q ss_pred cCceEEeeCCcc
Q psy14499 133 IPCDILIPAAIE 144 (262)
Q Consensus 133 ~~~DIlipaa~~ 144 (262)
.++||+.--...
T Consensus 71 ~~adviy~~~~~ 82 (163)
T d1pvva2 71 KDADVIYTDVWA 82 (163)
T ss_dssp TTCSEEEECCCC
T ss_pred hhccEEeeccee
Confidence 489999865543
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.26 E-value=1.5 Score=31.96 Aligned_cols=45 Identities=18% Similarity=0.025 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCHHHHHHHHHHH----HCCCEEEEEeCCCceeeCCCCCCHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFF----KAGAKIVAIQDDKTTIYNPNGFNIP 103 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~----~~g~~vv~V~D~~G~i~~~~GlD~~ 103 (262)
+.++++|+|-|.+|-.+|..|. +.|.+|+ +.+..-.+. +..+|.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt-~i~~~~~~l-~~~~~~~ 84 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVI-QLFPEKGNM-GKILPEY 84 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEE-EECSSSSTT-TTTSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEE-EecccccCC-cccCCHH
Confidence 4679999999999999998875 3688887 555433332 2235554
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.83 E-value=0.42 Score=35.64 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.||+|||+ |+-|+.-++...++|-++|+=...
T Consensus 14 k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtP 48 (130)
T d1euca1 14 KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTP 48 (130)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeecc
Confidence 7789999999 999999999999999999965543
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=85.83 E-value=0.43 Score=35.06 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=30.0
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..||+|||+ |.-|+.-++...++|-+||+=...
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtP 39 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTP 39 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEcc
Confidence 6789999999 999999999999999999965543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.83 E-value=0.32 Score=40.53 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=27.5
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+|+|.|-.|..+|+.|.+.|.+|+ |.|.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~-iiEk 32 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVL-VIEK 32 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEE-EECS
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEE-EEEC
Confidence 58999999999999999999999988 8875
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.55 E-value=0.35 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+.-|+|+|.|+.|..+|..+.+.|.+|+ |.|.
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~-viE~ 37 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVA-IVER 37 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEE-EEES
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 4568999999999999999999999988 7764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.52 E-value=0.49 Score=39.82 Aligned_cols=31 Identities=35% Similarity=0.362 Sum_probs=28.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+.+||+|.|. |-+|+++++.|.+.|.+|+++
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~ 45 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIAS 45 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence 6889999995 999999999999999999954
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=85.33 E-value=0.6 Score=36.26 Aligned_cols=42 Identities=14% Similarity=0.250 Sum_probs=35.7
Q ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceee
Q psy14499 54 LNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 95 (262)
Q Consensus 54 ~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~ 95 (262)
.+++|++|+|+|.|+-|.-+|..|.+.+.+++-++-+...+.
T Consensus 28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1w4xa2 28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAV 69 (235)
T ss_dssp CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEE
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccceee
Confidence 368999999999999999999999999999887776655443
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.30 E-value=0.24 Score=43.10 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCeEEEEcCCHHHHHHHHHHHH------CCCEEEEEeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFK------AGAKIVAIQDDK 91 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~------~g~~vv~V~D~~ 91 (262)
+.-|+|+|.|..|..+|..|.+ .|++|+ |.|..
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~Vl-llEK~ 70 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVC-LVEKA 70 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEE-EECSS
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEE-EEcCC
Confidence 4689999999999999999986 899998 88853
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.23 E-value=0.1 Score=40.99 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=22.8
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCE
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAK 83 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~ 83 (262)
+||+|+|.|-+|..+|..|.+.|.+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~ 25 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHS 25 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCC
Confidence 5899999999999999999998853
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=85.19 E-value=0.38 Score=36.11 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEE
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKI 84 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~v 84 (262)
++.+|+|+|.|.+|-.+|..|.++|.++
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v 29 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEG 29 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCce
Confidence 4679999999999999999999998653
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.08 E-value=0.43 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+|+++|.|. +.+|+++|+.|.+.|++|+ ++|.
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~-i~~~ 33 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVV-VLDL 33 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEES
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 477888886 7799999999999999988 6653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=84.81 E-value=0.36 Score=37.82 Aligned_cols=32 Identities=28% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
...++|+|.|+.|..+|..+.+.|.+|+ |.|.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~-liE~ 36 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTV-LVEG 36 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEE-EECS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEE-EEec
Confidence 4578999999999999999999999987 7764
|
| >d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Translational machinery components family: Ribosomal protein L18 and S11 domain: Ribosomal protein S11 species: Thermus thermophilus [TaxId: 274]
Probab=84.79 E-value=1.1 Score=32.62 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=48.1
Q ss_pred CCCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCceee
Q psy14499 32 GRQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTIY 95 (262)
Q Consensus 32 ~~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i~ 95 (262)
+....|.|....+.+.+.+.. ...++...|.+-|||.==..+.+.|...|.+|+.|.|....-|
T Consensus 42 g~rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~G~gR~~~ik~l~~~g~kI~~I~D~T~iph 106 (119)
T d2uubk1 42 GSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPH 106 (119)
T ss_dssp SGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECCCTTHHHHHHHHHTSSSEEEECEECCCCCS
T ss_pred cccccchhHHHHHHHHHHHHHHHcCCcEEEEEEEcCCCChHHHHHHHHHCCCEEEEEEECCCCCC
Confidence 456677777777776666543 4457788899999998666677889999999999999655444
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.67 E-value=0.28 Score=38.46 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=27.3
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC-------CEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAG-------AKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g-------~~vv~V~D~ 90 (262)
..||+|+|.|.-|.++|..|.+.| +.|. |.|.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~-v~E~ 40 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVD-MLEM 40 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEE-EEES
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceE-EEec
Confidence 469999999999999999998877 4665 8875
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=0.48 Score=35.64 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=26.9
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+|+|.|+.|..+|-.+.+.|.+++ |.|.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~-iie~ 32 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTG-LMGE 32 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEE-EECS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEE-EEEE
Confidence 58999999999999999999999987 6664
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.23 E-value=0.77 Score=37.52 Aligned_cols=43 Identities=12% Similarity=0.204 Sum_probs=31.2
Q ss_pred CCCeEEEE-c-CCHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 57 INSKISIQ-G-FGNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 57 ~~~~v~Iq-G-fG~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+||+|+ | -..+|+++|+.|.+. |++|+ +++ .|.+++.+..+
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi-~~~----------r~~~~~~~~~~ 46 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVV-LTA----------RDVTRGQAAVQ 46 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEE-EEE----------SSHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEE-EEE----------CCHHHHHHHHH
Confidence 48899765 4 467999999999875 88988 666 46666555443
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.18 E-value=0.17 Score=45.13 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
+..||.|+|.|.+|..+++.|...|..-+.+.|.
T Consensus 36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~ 69 (426)
T d1yovb1 36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 69 (426)
T ss_dssp HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence 5679999999999999999999999866668885
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=84.18 E-value=0.51 Score=37.83 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=79.1
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCce--------------ee------------CCCCC-------CHHHH
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTT--------------IY------------NPNGF-------NIPKL 105 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~--------------i~------------~~~Gl-------D~~~l 105 (262)
..|+|+|.|..|..+|-.|.+.|.+|+ |.|.... +. +|+-+ .....
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~-vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVT-VFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE-EECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEE-EEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence 469999999999999999999999987 8875311 11 11111 11222
Q ss_pred HHHHHhcCCc-cCCCCceec-CC-Cc--------cccccCceEEeeCCccCcc-----------cccchhccCceEEEec
Q psy14499 106 QKYVTFTRSI-KDFNEGEKI-ND-SK--------EFWSIPCDILIPAAIEDQI-----------TINNANNVTAKIILEG 163 (262)
Q Consensus 106 ~~~~~~~g~~-~~~~~~~~~-~~-~~--------~il~~~~DIlipaa~~~~i-----------t~e~a~~~~~kiIve~ 163 (262)
.+..+..+.. ..-+..... ++ .. ++....++|+..+...++. ...+-..++|+.|+=+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiA 163 (253)
T d2gqfa1 84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVA 163 (253)
T ss_dssp HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEEC
T ss_pred hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEc
Confidence 2222222211 000011111 10 01 1122456777666554322 1234455678755554
Q ss_pred CCCC------CCHHHHHHHHHCCCeEeccccccchhhHHH
Q psy14499 164 ANGP------TTTEADDILRDKGIILAPDVITNAGGVIVS 197 (262)
Q Consensus 164 AN~p------~t~ea~~~l~~rgi~~iPD~~aN~GGvi~s 197 (262)
..+. .|+...++.++-|..++|-.-+..|||-.+
T Consensus 164 tGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~ 203 (253)
T d2gqfa1 164 TGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTK 203 (253)
T ss_dssp CCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGG
T ss_pred CCcccccccCCCchHHHHHHhccccccccccccCCCCccc
Confidence 4443 367788999999999999999999998543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.15 E-value=0.56 Score=38.95 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.0
Q ss_pred CeE-EEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 59 SKI-SIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 59 ~~v-~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
++| .|.|. |-+|+++++.|.+.|++|+++.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~ 32 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIV 32 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEE
Confidence 577 68786 8999999999999999999664
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.73 E-value=0.61 Score=34.31 Aligned_cols=34 Identities=26% Similarity=0.423 Sum_probs=30.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
++.||+|||+ |+-|+.-++...++|-++|+=...
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtP 40 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTP 40 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECT
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeec
Confidence 5679999999 999999999999999999876654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.72 E-value=0.96 Score=32.39 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.+...||.|.|.|-.|+-++....+.|++++ |.|
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~-v~d 41 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVI-AVD 41 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEE-EEE
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEE-EEc
Confidence 4567899999999999999999999999998 655
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.56 E-value=1 Score=31.99 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCC---CEEEEEeCCCceeeCCCCCCHHH
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAG---AKIVAIQDDKTTIYNPNGFNIPK 104 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g---~~vv~V~D~~G~i~~~~GlD~~~ 104 (262)
..++++|+|.|.+|-.+|..|.+++ ..|. +.++.-.+. | ++|.+-
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vt-li~~~~~iL-~-~~d~~~ 66 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVT-LCYRGEMIL-R-GFDHTL 66 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEE-EEESSSSSS-T-TSCHHH
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEE-EEeccchhh-c-ccchHH
Confidence 3579999999999999998888755 4565 666544444 3 467653
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.53 E-value=0.82 Score=36.99 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcC-CHHHHHHHHHHHH---CCCEEEEEeCCCceeeCCCCCCHHHHHHHHH
Q psy14499 55 NIINSKISIQGF-GNVGSVAANLFFK---AGAKIVAIQDDKTTIYNPNGFNIPKLQKYVT 110 (262)
Q Consensus 55 ~l~~~~v~IqGf-G~VG~~~a~~L~~---~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~ 110 (262)
.|+|+.++|.|. ..+|+++|+.|.+ .|++|+ +++ .+.+++.+..+
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv-~~~----------r~~~~l~~~~~ 51 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVML-VSA----------RSESMLRQLKE 51 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEE-EEE----------SCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEE-EEE----------CCHHHHHHHHH
Confidence 578888888887 5699999999986 699998 666 45666655543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=83.39 E-value=0.47 Score=39.07 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=27.8
Q ss_pred CeEEEEcCCHHHHHHHHHHH-----HCCCEEEEEeCCC
Q psy14499 59 SKISIQGFGNVGSVAANLFF-----KAGAKIVAIQDDK 91 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~-----~~g~~vv~V~D~~ 91 (262)
.-|+|+|.|.+|..+|..|. +.|++|+ |.|.+
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~-vlEr~ 44 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVR-IIDKR 44 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE-EECSS
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEE-EEcCC
Confidence 56999999999999999995 4799988 88864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.39 E-value=0.65 Score=38.50 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCcee
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKTTI 94 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G~i 94 (262)
..|+|+|.|.-|..+|..|.+.|.+|+ |.+..+..
T Consensus 5 yDviIVGsG~aG~v~A~~La~~G~kVl-vLEaG~~~ 39 (379)
T d2f5va1 5 YDVVIVGSGPIGCTYARELVGAGYKVA-MFDIGEID 39 (379)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCEEE-EECSSCCC
T ss_pred ccEEEECcCHHHHHHHHHHhhCCCeEE-EEecCCCC
Confidence 468999999999999999999999988 88864433
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.09 E-value=0.46 Score=37.31 Aligned_cols=30 Identities=30% Similarity=0.267 Sum_probs=27.7
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D 89 (262)
.-|+|+|.|+.|..+|..+.++|.+|+ |.|
T Consensus 4 YDviVIG~GpaGl~aA~~aa~~G~kV~-viE 33 (235)
T d1h6va1 4 FDLIIIGGGSGGLAAAKEAAKFDKKVM-VLD 33 (235)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGCCCEE-EEC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEE-EEe
Confidence 468999999999999999999999987 887
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=83.05 E-value=0.91 Score=35.30 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=53.5
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccccCce
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWSIPCD 136 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~~~~D 136 (262)
+||+|.|. |-||+.+.++|.++ ...++.++-+ ...|-.+..+..... ....-+..+ .+++. .++|
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~-----~~aG~~i~~~~p~~~------~~~~~~~~~-~~~~~-~~~d 68 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSR-----TYAGKKLEEIFPSTL------ENSILSEFD-PEKVS-KNCD 68 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS-----TTTTSBHHHHCGGGC------CCCBCBCCC-HHHHH-HHCS
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeecc-----ccCCCcccccCchhh------ccccccccC-HhHhc-cccc
Confidence 48999996 99999999999885 5677766532 123444443221110 000111111 22333 4899
Q ss_pred EEeeCCccCcccccchhccCceEEEecCCCC
Q psy14499 137 ILIPAAIEDQITINNANNVTAKIILEGANGP 167 (262)
Q Consensus 137 Ilipaa~~~~it~e~a~~~~~kiIve~AN~p 167 (262)
+++-|.+.+. ..+.+.+.+...|++-+.-.
T Consensus 69 vvf~a~p~~~-s~~~~~~~~~~~VIDlSadf 98 (176)
T d1vkna1 69 VLFTALPAGA-SYDLVRELKGVKIIDLGADF 98 (176)
T ss_dssp EEEECCSTTH-HHHHHTTCCSCEEEESSSTT
T ss_pred eEEEccccHH-HHHHHHhhccceEEecCccc
Confidence 9998887543 44555555433455555443
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.00 E-value=1 Score=33.31 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCCCCCeEEEE--cCCHHHHHHHHHHHHCCCEEEEEeCCCcee-eCCCCCCHHHHHHHHHhcC
Q psy14499 53 NLNIINSKISIQ--GFGNVGSVAANLFFKAGAKIVAIQDDKTTI-YNPNGFNIPKLQKYVTFTR 113 (262)
Q Consensus 53 g~~l~~~~v~Iq--GfG~VG~~~a~~L~~~g~~vv~V~D~~G~i-~~~~GlD~~~l~~~~~~~g 113 (262)
+...-+.+++|. |.|-+|..+|+.|.+.|.+|+ +.+....+ ..-+......+.+..++.|
T Consensus 34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vt-lv~~~~~~~~~~~~~~~~~~~~~l~~~G 96 (156)
T d1djqa2 34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVT-IVSGVHLANYMHFTLEYPNMMRRLHELH 96 (156)
T ss_dssp TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEE-EEESSCTTTHHHHTTCHHHHHHHHHHTT
T ss_pred CccccCCceEEEecCCChHHHHHHHHHHHcCCeEE-EEecCCccccccchhHHHHHHHHHhhcc
Confidence 344446677776 889999999999999999988 55443222 1222334556666555543
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.58 Score=36.27 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=27.4
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.-|+|+|.|+.|..+|..+.+.|.+|+ |.|.
T Consensus 4 yDviIIG~GpaG~~aA~~aar~G~kV~-vIEk 34 (221)
T d3grsa1 4 YDYLVIGGGSGGLASARRAAELGARAA-VVES 34 (221)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE-EEES
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCEEE-EEec
Confidence 358999999999999999999999987 7664
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.75 E-value=0.71 Score=38.22 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=27.2
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+||.|.|. |-+|+++++.|.+.|..|+++.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d 32 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVD 32 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 68999996 9999999999999999999764
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.47 E-value=0.6 Score=36.03 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=27.6
Q ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 59 SKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 59 ~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..|+|+|.|+.|..+|..+.+.|.+++ |.+.
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~-vIEk 34 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVT-IVEK 34 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEE-EEES
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEE-EEec
Confidence 468999999999999999999999987 6653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.27 E-value=0.91 Score=37.33 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=27.3
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~D 89 (262)
+++.|.|. |-+|+++++.|.+.|++|+++..
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r 33 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR 33 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEEC
Confidence 57888885 99999999999999999997664
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=82.05 E-value=0.77 Score=38.27 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=26.4
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
+||+|.|. |-+|+++++.|.+.|++|+++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~ 30 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence 57999996 999999999999999999965
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.82 E-value=0.69 Score=37.84 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
....|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~-lvEK 47 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVI-LIEK 47 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEE-EECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEE-EEec
Confidence 45689999999999999999999999988 7774
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=81.40 E-value=2.1 Score=32.60 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.7
Q ss_pred CeEEEEcC-CHHHHHHHHHHHHC-CCEEEEEe
Q psy14499 59 SKISIQGF-GNVGSVAANLFFKA-GAKIVAIQ 88 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~~~-g~~vv~V~ 88 (262)
++|+|+|. |-||+.+.++|..+ ...+..++
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 48999995 99999999999997 77777664
|
| >d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Translational machinery components family: Ribosomal protein L18 and S11 domain: Ribosomal protein S11 species: Escherichia coli [TaxId: 562]
Probab=81.13 E-value=0.78 Score=33.43 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCChhHHHHHHHHHHHHHHh-CCCCCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCCc
Q psy14499 33 RQKATGRGVFIIGSKIASKI-NLNIINSKISIQGFGNVGSVAANLFFKAGAKIVAIQDDKT 92 (262)
Q Consensus 33 ~~~aTg~Gv~~~~~~~~~~~-g~~l~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~~G 92 (262)
....|-|....+.+.+.+.. ...++...|.+-|||.-=..+.+.|...|.+|+.|.|..-
T Consensus 43 ~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~GR~~air~l~~~gl~I~~I~D~Tp 103 (117)
T d2qalk1 43 SRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTP 103 (117)
T ss_dssp HHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTTTTHHHHHHHHTTCEEEEEEECCC
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCchHHHHHHHHhCCCEEEEEEECCC
Confidence 45567777666666666543 3356789999999999888888999999999999999543
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.91 E-value=0.97 Score=37.52 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.3
Q ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEe
Q psy14499 57 INSKISIQGF-GNVGSVAANLFFKAGAKIVAIQ 88 (262)
Q Consensus 57 ~~~~v~IqGf-G~VG~~~a~~L~~~g~~vv~V~ 88 (262)
+.++|.|.|. |-+|+++++.|.+.|.+|+++.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d 47 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLD 47 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEE
Confidence 5678999885 9999999999999999999764
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=80.85 E-value=2 Score=33.60 Aligned_cols=169 Identities=8% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC-CceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCc---c-cc
Q psy14499 57 INSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD-KTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSK---E-FW 131 (262)
Q Consensus 57 ~~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~-~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~---~-il 131 (262)
+.+||++.|.+..+..+.+.|.+.|..+++|.-. .-.-....-+....+.......+ +.-+ ..+... .+ + +-
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~ 78 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG-LPVF-QPVSLR-PQENQQLVA 78 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTT-CCEE-CCSCSC-SHHHHHHHH
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccC-cccc-cccccc-chhhHHHHh
Confidence 3578999999999999999999999999888732 11111111111122223332221 1000 000011 11 1 22
Q ss_pred ccCceEEeeCCccCcccccchhccCce-EEEecCCCCC----CHHHHHHHHH---CCCeEeccccc---cchhhHHHHHH
Q psy14499 132 SIPCDILIPAAIEDQITINNANNVTAK-IILEGANGPT----TTEADDILRD---KGIILAPDVIT---NAGGVIVSYFE 200 (262)
Q Consensus 132 ~~~~DIlipaa~~~~it~e~a~~~~~k-iIve~AN~p~----t~ea~~~l~~---rgi~~iPD~~a---N~GGvi~s~~E 200 (262)
..++|+++-+.....+..+..+..+.. +-+=.+-.|- .|-.-.++.. -|+.+. ++. =+|-++.
T Consensus 79 ~~~~d~~v~~~~~~ii~~~il~~~k~g~iN~Hps~LP~yRG~~pi~wai~nge~~~GvT~h--~i~~~iD~G~Ii~---- 152 (206)
T d1fmta2 79 ELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIM--QMDVGLDTGDMLY---- 152 (206)
T ss_dssp HTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSSTTTTBSSCHHHHHHHHTCSEEEEEEE--ECCSSSSCSCEEE----
T ss_pred hhcceEEEeeccccccchhhHhcCCCCeeecCchhhHhhhhhhhhhhHHHcCCceeceeEE--EeccccChHHhhh----
Confidence 468999999999999999888777654 3344444453 4554455432 244442 221 1233321
Q ss_pred HHhhhc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14499 201 WVQNLS--NLLWTEQEINLRLNNIICNAFDAIWELANT 236 (262)
Q Consensus 201 ~~~~~~--~~~~~~~~v~~~l~~~~~~~~~~v~~~a~~ 236 (262)
|..- ....+..++..++.......+.++++.-.+
T Consensus 153 --q~~~~i~~~dt~~~l~~k~~~~~~~l~~~~i~~i~~ 188 (206)
T d1fmta2 153 --KLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLAD 188 (206)
T ss_dssp --EEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1100 112346677777766666666666655443
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=80.82 E-value=1.9 Score=32.06 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=46.7
Q ss_pred CCCCeEEEEcC---CHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHHHHHHHHHhcCCccCCCCceecCCCccccc
Q psy14499 56 IINSKISIQGF---GNVGSVAANLFFKAGAKIVAIQDDKTTIYNPNGFNIPKLQKYVTFTRSIKDFNEGEKINDSKEFWS 132 (262)
Q Consensus 56 l~~~~v~IqGf---G~VG~~~a~~L~~~g~~vv~V~D~~G~i~~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~il~ 132 (262)
++|++|+++|= ++|..++++++..+|++++ ++-+.+... + +......++.+. ..+...|.++.+
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~-~~~P~~~~~-----~-~~~~~~~~~~~~-----~~~~~~d~~~av- 68 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELY-LISPELLRM-----P-RHIVEELREKGM-----KVVETTTLEDVI- 68 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEE-EECCGGGCC-----C-HHHHHHHHHTTC-----CEEEESCTHHHH-
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEE-EEccchhhc-----c-hHHHHHHHhhcc-----cceeecCHHHhh-
Confidence 68999999997 7899999999999999987 544333221 2 222333322221 112223355555
Q ss_pred cCceEEeeCCcc
Q psy14499 133 IPCDILIPAAIE 144 (262)
Q Consensus 133 ~~~DIlipaa~~ 144 (262)
.++|++.--...
T Consensus 69 ~~aDvvy~~~~~ 80 (157)
T d1ml4a2 69 GKLDVLYVTRIQ 80 (157)
T ss_dssp TTCSEEEECCCC
T ss_pred ccCcEEEeeccc
Confidence 478887765543
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=80.72 E-value=0.74 Score=37.06 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.2
Q ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 60 KISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 60 ~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
.|+|+|.|..|..+|..+.+.|.+|. +.|.
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~-liE~ 32 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVA-LVEK 32 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEE-EEES
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 47999999999999999999999987 7774
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=80.53 E-value=0.65 Score=35.71 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=28.4
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEeCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAGAKIVAIQDD 90 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g~~vv~V~D~ 90 (262)
..-|+|+|.|+.|..+|..+.+.|.+|+ |.|.
T Consensus 3 kYDviIIGgGpAGl~aA~~aar~G~~V~-viE~ 34 (229)
T d3lada1 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTA-LIEK 34 (229)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEE-EEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 4568999999999999999999999987 7774
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=80.50 E-value=0.59 Score=38.07 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCC
Q psy14499 55 NIINSKISIQGFGNVGSVAANLFFK-AGAKIVAIQDD 90 (262)
Q Consensus 55 ~l~~~~v~IqGfG~VG~~~a~~L~~-~g~~vv~V~D~ 90 (262)
.+.+..|+|+|.|..|..+|..|.+ .|++|+ |.|.
T Consensus 30 ~~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~-vlE~ 65 (278)
T d1rp0a1 30 TYAETDVVVVGAGSAGLSAAYEISKNPNVQVA-IIEQ 65 (278)
T ss_dssp HHTEEEEEEECCSHHHHHHHHHHHTSTTSCEE-EEES
T ss_pred cccCCCEEEECCCHHHHHHHHHHHHccCCeEE-EEec
Confidence 3467889999999999999999976 599988 8875
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.49 E-value=3.4 Score=30.69 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=22.6
Q ss_pred CeEEEEcC-CHHHHHHHHHHH-HCC--CEEEEEeC
Q psy14499 59 SKISIQGF-GNVGSVAANLFF-KAG--AKIVAIQD 89 (262)
Q Consensus 59 ~~v~IqGf-G~VG~~~a~~L~-~~g--~~vv~V~D 89 (262)
+||+|+|. |+||+++|-.|. +.+ -.++ ..|
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~-L~D 34 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELS-LYD 34 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEE-EEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEE-Eec
Confidence 58999994 999999998775 333 4554 667
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=80.36 E-value=0.93 Score=34.17 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCC
Q psy14499 58 NSKISIQGFGNVGSVAANLFFKAG--AKIVAIQDDKTTIYNPN 98 (262)
Q Consensus 58 ~~~v~IqGfG~VG~~~a~~L~~~g--~~vv~V~D~~G~i~~~~ 98 (262)
..+|+|+|.|.+|-.+|..|.+.| .+++-+.|.....|+..
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~ 45 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP 45 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhH
Confidence 356999999999999999999877 45665667766666543
|
| >d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Azotobacter vinelandii [TaxId: 354]
Probab=80.32 E-value=1.2 Score=34.62 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHh-CCCCCCCeEEEEcCCH----------HHHHHHHHHHHCCCEEEEEeCCCceeeC
Q psy14499 47 KIASKI-NLNIINSKISIQGFGN----------VGSVAANLFFKAGAKIVAIQDDKTTIYN 96 (262)
Q Consensus 47 ~~~~~~-g~~l~~~~v~IqGfG~----------VG~~~a~~L~~~g~~vv~V~D~~G~i~~ 96 (262)
..++.+ ..++++++++|.|.|+ .+..+-+.|.+.|+++|+-....|+-|+
T Consensus 76 ~~~~~~~~~~l~g~~~avfGlGDs~~~~~~Fc~a~~~l~~~l~~~GA~~iG~~~~~gy~f~ 136 (179)
T d1yoba1 76 EFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGYEFE 136 (179)
T ss_dssp HHHHHHTTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTCCCS
T ss_pred HHHhhccccccCCcEEEEEEecCCcccchhHHHHHHHHHHHHHhCCCeEeeccCCCCcccc
Confidence 344555 4589999999999886 4667778888899999987765565443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=80.07 E-value=0.97 Score=36.85 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=25.3
Q ss_pred eEEEEcC-CHHHHHHHHHHHHCCCEEEEE
Q psy14499 60 KISIQGF-GNVGSVAANLFFKAGAKIVAI 87 (262)
Q Consensus 60 ~v~IqGf-G~VG~~~a~~L~~~g~~vv~V 87 (262)
||.|.|. |-+|+++++.|.+.|++|+++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~i 30 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVF 30 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 7888885 999999999999999999965
|