Psyllid ID: psy14509

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MSPGCTTTIGVNTQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFMGSA
Secondary Structure (PSIPRED)
cccccccccccccHHHHcccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHcccccccccccHHHccccccccEEEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHcccccccccccEEEEcccHHHHHHHHHHHHccccccccEEEccccccccccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccEEEEEcccccHcHccccccccccccccccEEEEEccccccccHHHcccccHHHHHHHHHHHcHHHHHHHccHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcHHHccccHHHHHHHHHHHcccccccccccEEEEEcccHHHHHHHHHHHcccccHHHHHHHHccccccccccEEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
mspgctttigvNTQLFLLFPvmtesdvkkplpngpqegvnypisvlycgncslpveyceyhpeyeKCKVWLEKNLPEEFEKLVKLSgdggdedaTEEKKRQKRGGKGIVkarkkeevpkqrggkgivkarkkeevpkqvcvsraprgkkksVTVVTGLSSFDIDLKVASKFFgtrfacgssvtgddeiviqgdvkddlfdvipekwpeiDEDFIEdlgdlksptynigkLCFTYTYYYFMGSA
Flexible Loop (DISEMBL)
mspgctttigvntQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVklsgdggdedateekkrqkrggkgivkarkkeevpkqrggkgivkarkkeevpkqvcvsraprgkkksvtvvtglssfdiDLKVASKFFGTRFacgssvtgddeivIQGDVKDDLFDVIPEKWPEIDEDFIEDLgdlksptynigkLCFTYTYYYFMGSA
Low Complexity Region (SEG)
MSPGCTTTIGVNTQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEkkrqkrggkgIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFMGSA
Disordered region (IsUnstruct)
****CTTTIGVNTQLFLLFPVMTE************EGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFE**********************************************************************SVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFM***
Disordered Region (DISOPRED)
************TQ*****************************SVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK*********************************************************SRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIED*G******YNIGKLCFTYTYYYFMGSA
Disordered Region (DISEMBL)
MSPGCTTTIGVNTQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLS***************************************IVKAR***********************VVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFMGSA
Disordered Region (DISPRO)
***GCTTTIGVNTQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG************************************V*****EEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFMGS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPGCTTTIGVNTQLFLLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFMGSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q5ZJ39	198	Density-regulated protein	yes	N/A	0.753	0.924	0.487	5e-47
Q9CQJ6	198	Density-regulated protein	yes	N/A	0.757	0.929	0.495	5e-47
O43583	198	Density-regulated protein	yes	N/A	0.757	0.929	0.49	1e-46
Q2HJ47	198	Density-regulated protein	yes	N/A	0.699	0.858	0.510	4e-46
Q5RFP5	198	Density-regulated protein	yes	N/A	0.724	0.888	0.494	2e-45
Q6DFN7	200	Density-regulated protein	yes	N/A	0.707	0.86	0.505	5e-44
Q6GLZ1	198	Density-regulated protein	N/A	N/A	0.769	0.944	0.470	6e-44
Q6DH65	208	Density-regulated protein	yes	N/A	0.748	0.875	0.489	7e-43
Q9NAH4	192	Density-regulated protein	yes	N/A	0.757	0.958	0.452	3e-39
A5DGV3	201	Translation machinery-ass	N/A	N/A	0.600	0.726	0.391	1e-23

>sp|Q5ZJ39|DENR_CHICK Density-regulated protein OS=Gallus gallus GN=DENR PE=2 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 137/199 (68%), Gaps = 16/199 (8%)

Query: 26  DVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKL 85
           D +  + +G +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P+EF KL   
Sbjct: 12  DCRGDIRSGARSDADYPLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLT-- 69

Query: 86  SGDGGDEDATEEKKRQKRG---GKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVS 142
                     E   +Q+ G   G+G     ++E+  ++RGG+G +K +KK+ VP++V ++
Sbjct: 70  ---------VENSPKQEAGVGEGQGTA-GEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIA 118

Query: 143 RAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI 202
           + PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI
Sbjct: 119 KIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVI 178

Query: 203 PEKWPEIDEDFIEDLGDLK 221
            EKWPE+D+D IEDLG++K
Sbjct: 179 QEKWPEVDDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.
Gallus gallus (taxid: 9031)

>sp|Q9CQJ6|DENR_MOUSE Density-regulated protein OS=Mus musculus GN=Denr PE=2 SV=1

 Score =  187 bits (475), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 99/200 (49%), Positives = 136/200 (68%), Gaps = 16/200 (8%)

Query: 25  SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
           +D K    N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  
Sbjct: 11  ADCKGDTKNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT- 69

Query: 85  LSGDGGDEDATEEKKRQKRG---GKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCV 141
                      E   +Q+ G   G+G V   ++E+  ++RGG+G +K +KK+ VP++V +
Sbjct: 70  ----------VENSPKQETGITEGQGPV-GEEEEKKKQKRGGRGQIK-QKKKTVPQKVTI 117

Query: 142 SRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDV 201
           ++ PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DV
Sbjct: 118 AKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDV 177

Query: 202 IPEKWPEIDEDFIEDLGDLK 221
           I EKWPE+D+D IEDLG++K
Sbjct: 178 IQEKWPEVDDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Mus musculus (taxid: 10090)

>sp|O43583|DENR_HUMAN Density-regulated protein OS=Homo sapiens GN=DENR PE=1 SV=2

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/200 (49%), Positives = 135/200 (67%), Gaps = 16/200 (8%)

Query: 25  SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
           +D K    N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  
Sbjct: 11  ADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT- 69

Query: 85  LSGDGGDEDATEEKKRQKRG---GKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCV 141
                      E   +Q+ G   G+G     ++E+  ++RGG+G +K +KK+ VP++V +
Sbjct: 70  ----------VENSPKQEAGISEGQGTA-GEEEEKKKQKRGGRGQIK-QKKKTVPQKVTI 117

Query: 142 SRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDV 201
           ++ PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DV
Sbjct: 118 AKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDV 177

Query: 202 IPEKWPEIDEDFIEDLGDLK 221
           I EKWPE+D+D IEDLG++K
Sbjct: 178 IQEKWPEVDDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon. Plays a role in the modulation of the translational profile of a subset of cancer-related mRNAs when recruited to the translational initiation complex by the oncogene MCTS1.

Homo sapiens (taxid: 9606)

>sp|Q2HJ47|DENR_BOVIN Density-regulated protein OS=Bos taurus GN=DENR PE=2 SV=1

 Score =  184 bits (468), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 130/186 (69%), Gaps = 16/186 (8%)

Query: 39  VNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEK 98
            +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL             E  
Sbjct: 25  ADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT-----------VENS 73

Query: 99  KRQKRG---GKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVV 155
            +Q+ G   G+G     ++E+  ++RGG+G +K +KK+ VP++V +++ PR KKK VT V
Sbjct: 74  PKQEAGISEGQGTA-GEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYVTRV 131

Query: 156 TGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE 215
            GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IE
Sbjct: 132 CGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIE 191

Query: 216 DLGDLK 221
           DLG++K
Sbjct: 192 DLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Bos taurus (taxid: 9913)

>sp|Q5RFP5|DENR_PONAB Density-regulated protein OS=Pongo abelii GN=DENR PE=2 SV=1

 Score =  182 bits (461), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 131/192 (68%), Gaps = 16/192 (8%)

Query: 33  NGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDE 92
           N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL          
Sbjct: 19  NSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT--------- 69

Query: 93  DATEEKKRQKRG---GKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKK 149
              E   +Q+ G   G+G     ++E+  ++RGG+G +K +KK+ VP++V +++ PR KK
Sbjct: 70  --VENSPKQEAGISEGQGTA-GEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKK 125

Query: 150 KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEI 209
           K VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+
Sbjct: 126 KYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEV 185

Query: 210 DEDFIEDLGDLK 221
            +D IEDLG++K
Sbjct: 186 VDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Pongo abelii (taxid: 9601)

>sp|Q6DFN7|DENR_XENTR Density-regulated protein OS=Xenopus tropicalis GN=denr PE=2 SV=1

 Score =  177 bits (450), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 127/182 (69%), Gaps = 10/182 (5%)

Query: 40  NYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKK 99
           + P+ VLYCG CSLP EYCEY P+  KC+ WLEKN P+EF KL  L      E  T E +
Sbjct: 28  DLPLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDEFSKLT-LGISPKQETGTVEGQ 86

Query: 100 RQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLS 159
                        ++E+  ++RGG+G +K +KK+ VP++V +++ PR KKK VT V GL+
Sbjct: 87  A--------TSGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYVTRVCGLA 137

Query: 160 SFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219
           +F+I+LK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG+
Sbjct: 138 TFEIELKDAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLGE 197

Query: 220 LK 221
           +K
Sbjct: 198 VK 199

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GLZ1|DENR_XENLA Density-regulated protein OS=Xenopus laevis GN=denr PE=2 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 95/202 (47%), Positives = 136/202 (67%), Gaps = 15/202 (7%)

Query: 20  PVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEF 79
           P   ++D+K P  +G     ++P+ VLYCG CSLP EYCEY P+  KC+ WLEKN P+ F
Sbjct: 11  PSDCKADLKIPKIDG-----DFPLKVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPDVF 65

Query: 80  EKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQV 139
            KL  L      E  T E +             ++E+  ++RGG+G +K +KK+ VP+++
Sbjct: 66  AKLT-LGHIPKQETGTVEGQ--------ATSGEEEEKKKQKRGGRGQIK-QKKKTVPQRI 115

Query: 140 CVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLF 199
            +++ PR KKK VT V GL++F+I+LK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ 
Sbjct: 116 TIAKIPRAKKKYVTRVCGLATFEIELKDAQRFFAQKFSCGASVTGEDEIIIQGDFTDDII 175

Query: 200 DVIPEKWPEIDEDFIEDLGDLK 221
           DVI EKWPE+D+D IEDLG++K
Sbjct: 176 DVIQEKWPEVDDDSIEDLGEVK 197

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Xenopus laevis (taxid: 8355)

>sp|Q6DH65|DENR_DANRE Density-regulated protein OS=Danio rerio GN=denr PE=1 SV=1

 Score =  174 bits (440), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 127/186 (68%), Gaps = 4/186 (2%)

Query: 39  VNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSG---DGGDEDAT 95
             YP+ VLYCG CSLP EYCEY PE  KCK WLEKN P+ F KL   +    +       
Sbjct: 23  AKYPLKVLYCGVCSLPAEYCEYMPEPAKCKQWLEKNFPDVFAKLTLGTAPKQESKGGGGG 82

Query: 96  EEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVV 155
           E+    +  G+      ++E+  ++RGG+G +K +KK+ VP++V +++ PR KKK VT V
Sbjct: 83  EDGGGGRGRGEAPPAGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYVTRV 141

Query: 156 TGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE 215
            GL++FDI+LK A +FF  +F+CG+SVT +DEI+IQGD  DD+ DVI EKWPE+D+D I+
Sbjct: 142 CGLATFDIELKEAQRFFAQKFSCGASVTAEDEIIIQGDFTDDIIDVIQEKWPEVDDDSID 201

Query: 216 DLGDLK 221
           DLG++K
Sbjct: 202 DLGEVK 207

May be involved in the translation of target mRNAs by scanning and recognition of the initiation codon.

Danio rerio (taxid: 7955)

>sp|Q9NAH4|DENR_CAEEL Density-regulated protein homolog OS=Caenorhabditis elegans GN=Y47D3A.21 PE=3 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/201 (45%), Positives = 126/201 (62%), Gaps = 17/201 (8%)

Query: 24  ESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLV 83
           E+ V + L  GP +GV+YP+ ++YCG CS+P EYC+Y  + + C+ W  +N PE  E L 
Sbjct: 5   ETAVIQSLAPGPIDGVSYPLKMVYCGQCSMPPEYCDYSGQTDVCRAWATQNAPELLEGLE 64

Query: 84  ---KLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVC 140
              + + DG ++   +   +  + G    +A                  +KK   P++V 
Sbjct: 65  ISDEPAADGDEKKKQKRGGKGSKTGAAAAQAAAS-------------GGKKKGGGPQKVT 111

Query: 141 VSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFD 200
           + R PRGKK SVTV+ GL++FDIDLKVASK F  +FACGSSVTG DEIVIQGDVKDDL D
Sbjct: 112 LQREPRGKK-SVTVIKGLATFDIDLKVASKLFAQKFACGSSVTGADEIVIQGDVKDDLLD 170

Query: 201 VIPEKWPEIDEDFIEDLGDLK 221
           +IPEKW ++ ++ I+DLGD K
Sbjct: 171 LIPEKWKQVTDEQIDDLGDKK 191

Caenorhabditis elegans (taxid: 6239)

>sp|A5DGV3|DENR_PICGU Translation machinery-associated protein 22 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=TMA22 PE=3 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 15/161 (9%)

Query: 42  PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDG-GDEDATEEKKR 100
           P SVLYCG CS P E+CE+   +++CK WLE+N  E +EKL   S D   +  +T    +
Sbjct: 6   PKSVLYCGVCSFPPEFCEFGGSFKRCKEWLEQNDKELYEKL--YSEDALANATSTLSIDK 63

Query: 101 QKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSS 160
           +++  K + K + KEE  ++R          K+++  +V + R  R K+K V  ++GL  
Sbjct: 64  EQKIAKELEKKQAKEEAKQER--------ELKKQLASKVTIKRIERNKRKHVIAISGLEV 115

Query: 161 FDIDLKVASKFFGTRFACGSSVTGD----DEIVIQGDVKDD 197
           FDID+K  SK F ++FA G+SVT +    DEI++QGDV D+
Sbjct: 116 FDIDMKKLSKTFASKFATGASVTKNAEKKDEIIVQGDVSDE 156

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
91089077	180	PREDICTED: similar to putative accessory	0.728	0.983	0.697	2e-67
195129986	185	GI15232 [Drosophila mojavensis] gi|19390	0.695	0.913	0.666	1e-66
307197534	184	Density-regulated protein [Harpegnathos	0.732	0.967	0.66	6e-66
195457332	187	GK14620 [Drosophila willistoni] gi|19417	0.728	0.946	0.630	1e-65
195393934	185	GJ18691 [Drosophila virilis] gi|19415011	0.720	0.945	0.636	2e-65
322789995	186	hypothetical protein SINV_02331 [Solenop	0.748	0.978	0.645	2e-65
389609389	177	similar to CG9099 [Papilio xuthus]	0.711	0.977	0.699	4e-65
332027313	186	Density-regulated protein [Acromyrmex ec	0.711	0.930	0.663	4e-65
170048693	204	density-regulated protein [Culex quinque	0.740	0.882	0.600	9e-65
108742326	205	putative accessory gland protein [Gryllu	0.765	0.907	0.697	4e-64

>gi|91089077|ref|XP_971296.1| PREDICTED: similar to putative accessory gland protein [Tribolium castaneum] gi|270012410|gb|EFA08858.1| hypothetical protein TcasGA2_TC006559 [Tribolium castaneum]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 154/195 (78%), Gaps = 18/195 (9%)

Query: 27  VKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLS 86
           V++ L  GP+ GV YP+ V+YCGNCS+P+EYCEY+PEY+KCK WLE+NLP+EFEK+    
Sbjct: 3   VEEKLQMGPRTGVTYPLQVIYCGNCSMPIEYCEYYPEYDKCKQWLERNLPDEFEKVKIGD 62

Query: 87  GDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPR 146
             G    A EEKKRQKRGGKG++                  K +KKE+ PKQVCVSRAPR
Sbjct: 63  EAGEGGGAEEEKKRQKRGGKGMI------------------KTKKKEDGPKQVCVSRAPR 104

Query: 147 GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206
           GKKKSVTVVTGLS FDIDLKVA+KFFGTRFACGSSVTG+DEIVIQGDVKDDLFDVIPEKW
Sbjct: 105 GKKKSVTVVTGLSGFDIDLKVAAKFFGTRFACGSSVTGEDEIVIQGDVKDDLFDVIPEKW 164

Query: 207 PEIDEDFIEDLGDLK 221
           PEIDED IEDLGD K
Sbjct: 165 PEIDEDLIEDLGDQK 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129986|ref|XP_002009435.1| GI15232 [Drosophila mojavensis] gi|193907885|gb|EDW06752.1| GI15232 [Drosophila mojavensis]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 154/195 (78%), Gaps = 26/195 (13%)

Query: 31  LPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLV----KLS 86
           L  GP+E V YPI + YCG+CS+P+EYCEY+PEY+KCK WLE+NLP++FE+L     + +
Sbjct: 12  LKLGPRENVTYPIVMKYCGHCSMPIEYCEYYPEYDKCKEWLERNLPDDFERLKIEEEQAA 71

Query: 87  GDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPR 146
            DG D+D    KKRQKRGGKG+++ +                  KKE+VPK++CVSRA R
Sbjct: 72  ADGTDDD----KKRQKRGGKGLLRVK------------------KKEDVPKRICVSRAAR 109

Query: 147 GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206
           GKKKSVTVVTGLS+FDIDLKVA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKW
Sbjct: 110 GKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 169

Query: 207 PEIDEDFIEDLGDLK 221
            EIDED IEDLGDLK
Sbjct: 170 AEIDEDVIEDLGDLK 184

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197534|gb|EFN78764.1| Density-regulated protein [Harpegnathos saltator]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 132/200 (66%), Positives = 157/200 (78%), Gaps = 22/200 (11%)

Query: 25  SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
           ++V+  L  GP   + YPI VLYCGNCSLP+EYCEY+PEY+KCK WLE+NLP EFEK VK
Sbjct: 3   TEVQSDLRLGPDPNITYPIQVLYCGNCSLPIEYCEYYPEYDKCKQWLERNLPTEFEK-VK 61

Query: 85  LSGDGGDEDA---TEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCV 141
           L+ + G  +A    +EKKRQKRGGKG++K                   +KKE+VP+ V V
Sbjct: 62  LAVEDGSTEAGGGEDEKKRQKRGGKGMLKT------------------KKKEDVPRLVTV 103

Query: 142 SRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDV 201
           SRAPRGKKKSVTVVTGLS+FDIDLKVA+KFFG++FACGSSVTGDDEIVIQGD+KDDLF+V
Sbjct: 104 SRAPRGKKKSVTVVTGLSTFDIDLKVAAKFFGSKFACGSSVTGDDEIVIQGDIKDDLFEV 163

Query: 202 IPEKWPEIDEDFIEDLGDLK 221
           IPEKWP+IDED I+DLGD K
Sbjct: 164 IPEKWPQIDEDSIDDLGDQK 183

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457332|ref|XP_002075528.1| GK14620 [Drosophila willistoni] gi|194171613|gb|EDW86514.1| GK14620 [Drosophila willistoni]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 158/203 (77%), Gaps = 26/203 (12%)

Query: 23  TESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKL 82
           T ++V   L  GP++GV YPI + YCG+C++P+EYCEY+PEY+KCK WLE+++PE+FE+L
Sbjct: 6   TSTNVADRLKLGPRDGVTYPIIMKYCGHCTMPIEYCEYYPEYDKCKDWLERHMPEDFERL 65

Query: 83  V----KLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQ 138
                + + DG D+D    KKRQKRGGKG+++ +                  KKE+VPK+
Sbjct: 66  KIEEEQAAADGTDDD----KKRQKRGGKGLLRVK------------------KKEDVPKK 103

Query: 139 VCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDL 198
           +CVSRA RGKKKSVTVVTGLS+FDIDLKVA+KFFGT+FACGSSVTGDDEIVIQGDVKD+L
Sbjct: 104 ICVSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDEL 163

Query: 199 FDVIPEKWPEIDEDFIEDLGDLK 221
           FDVIPEKW EIDED IEDLGD K
Sbjct: 164 FDVIPEKWAEIDEDVIEDLGDQK 186

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393934|ref|XP_002055607.1| GJ18691 [Drosophila virilis] gi|194150117|gb|EDW65808.1| GJ18691 [Drosophila virilis]

 Score =  254 bits (650), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 157/201 (78%), Gaps = 26/201 (12%)

Query: 25  SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLV- 83
           ++V + L  GP+E V YPI + YCG+C++P+EYCEY+PEY+KCK WLE+NLP++FE+L  
Sbjct: 6   TNVAERLKLGPRENVTYPIVMKYCGHCTMPIEYCEYYPEYDKCKDWLERNLPDDFERLKI 65

Query: 84  ---KLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVC 140
              + + DG D+D    KKRQKRGGKG+++ +                  KKE+VPK++C
Sbjct: 66  EEEQAAADGTDDD----KKRQKRGGKGLLRVK------------------KKEDVPKRIC 103

Query: 141 VSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFD 200
           VSRA RGKKKSVTVVTGLS+FDIDLKVA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFD
Sbjct: 104 VSRAARGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFD 163

Query: 201 VIPEKWPEIDEDFIEDLGDLK 221
           VIP+KW EIDED IEDLGD K
Sbjct: 164 VIPDKWAEIDEDVIEDLGDQK 184

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789995|gb|EFZ15071.1| hypothetical protein SINV_02331 [Solenopsis invicta]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/203 (64%), Positives = 156/203 (76%), Gaps = 21/203 (10%)

Query: 22  MTESDVKKP-LPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFE 80
           M+ES  ++P    GP   V YPI V YCGNCSLP+EYCEY+PEY+KCK WLE+NLP EFE
Sbjct: 1   MSESAEEQPEFRLGPDPNVTYPIRVQYCGNCSLPIEYCEYYPEYDKCKQWLERNLPTEFE 60

Query: 81  KLVKLSGDGGDEDAT--EEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQ 138
           K+   + DG  E +T  +EKKRQKRGGKG++K                   +KKE++P+ 
Sbjct: 61  KMKLATEDGSTEVSTGEDEKKRQKRGGKGMLKT------------------KKKEDIPRL 102

Query: 139 VCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDL 198
           V +SRAPRGKKKSVTVV GLS+FDIDLKVA+KFFG++FACGSSVTGDDEIVIQGDVKDDL
Sbjct: 103 VTISRAPRGKKKSVTVVNGLSTFDIDLKVAAKFFGSKFACGSSVTGDDEIVIQGDVKDDL 162

Query: 199 FDVIPEKWPEIDEDFIEDLGDLK 221
           F+VIPEKWP+IDED I+DLGD K
Sbjct: 163 FEVIPEKWPQIDEDSIDDLGDQK 185

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609389|dbj|BAM18306.1| similar to CG9099 [Papilio xuthus]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/193 (69%), Positives = 153/193 (79%), Gaps = 20/193 (10%)

Query: 29  KPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGD 88
           + L  GP+EG+ YPI V YCGNCS+P+EYCEY+PEY+KCK WLEKNLP EFEK VK+  +
Sbjct: 4   RDLSMGPREGITYPIKVQYCGNCSMPIEYCEYYPEYDKCKQWLEKNLPTEFEK-VKIDEE 62

Query: 89  GGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGK 148
                  EEKKRQKRGGKG++K                  ++KKE+VPK V VSRAPRGK
Sbjct: 63  ENAG-GEEEKKRQKRGGKGMLK------------------SKKKEDVPKLVQVSRAPRGK 103

Query: 149 KKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE 208
           KKSVTVV+GLS+FDIDLKVA+KFFGT+FACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE
Sbjct: 104 KKSVTVVSGLSTFDIDLKVAAKFFGTKFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE 163

Query: 209 IDEDFIEDLGDLK 221
           IDED IEDLGD K
Sbjct: 164 IDEDSIEDLGDQK 176

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027313|gb|EGI67397.1| Density-regulated protein [Acromyrmex echinatior]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/193 (66%), Positives = 151/193 (78%), Gaps = 20/193 (10%)

Query: 31  LPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG 90
           L  GP   V YPI V YCGNCSLP+EYCEY+PEY+KCK WLE+NLP EFEK+   + DG 
Sbjct: 11  LELGPVPNVTYPIRVQYCGNCSLPIEYCEYYPEYDKCKQWLERNLPTEFEKIKLATEDGS 70

Query: 91  DEDAT--EEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGK 148
            E +T  +EKKRQKRGGKG++K                   +KKE++P+ + +SRAPRGK
Sbjct: 71  TEVSTGEDEKKRQKRGGKGMLK------------------TKKKEDIPRLITISRAPRGK 112

Query: 149 KKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE 208
           KKSVTVVTGLS+FDIDLKVA+KFFG++FACGSSVTGDDEIVIQGDVKDDLF+VIPEKWP+
Sbjct: 113 KKSVTVVTGLSTFDIDLKVAAKFFGSKFACGSSVTGDDEIVIQGDVKDDLFEVIPEKWPQ 172

Query: 209 IDEDFIEDLGDLK 221
           IDED I+DLGD K
Sbjct: 173 IDEDSIDDLGDQK 185

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048693|ref|XP_001870739.1| density-regulated protein [Culex quinquefasciatus] gi|167870717|gb|EDS34100.1| density-regulated protein [Culex quinquefasciatus]

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 131/218 (60%), Positives = 160/218 (73%), Gaps = 38/218 (17%)

Query: 25  SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
           S++   L  GP+EGV+YP+SV YCG+CS+P+EYCE +PEY+KCK WLEKNLP EF ++  
Sbjct: 3   SEIPARLQAGPKEGVSYPLSVQYCGHCSMPLEYCENYPEYDKCKQWLEKNLPSEFARIKL 62

Query: 85  LSGD---------------------GGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGG 123
            S +                      GD+ A E+KKRQKRGGKG++K++K    PK+ G 
Sbjct: 63  GSAEGGSTGGAGGAAGGATGSGDKAAGDDGAEEDKKRQKRGGKGMLKSKK----PKEDG- 117

Query: 124 KGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT 183
                       PK++C+SR+ RGKKKSVTVVTGL++FDIDLKVA+KFFGT+FACGSSVT
Sbjct: 118 ------------PKKICLSRSARGKKKSVTVVTGLATFDIDLKVAAKFFGTKFACGSSVT 165

Query: 184 GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 221
           GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI+DLGD K
Sbjct: 166 GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIDDLGDQK 203

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|108742326|gb|ABG01799.1| putative accessory gland protein [Gryllus firmus]

 Score =  250 bits (639), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 143/205 (69%), Positives = 159/205 (77%), Gaps = 19/205 (9%)

Query: 17  LLFPVMTESDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLP 76
           L FP     D  +    GP  GV YP+ VLYCGNCS+P+EYCEY+PEYEKCK WLE+NLP
Sbjct: 19  LRFPAAM-GDGNENFAPGPLPGVTYPVQVLYCGNCSMPIEYCEYYPEYEKCKQWLERNLP 77

Query: 77  EEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVP 136
           EEFEKL+K+     D    EEKKRQKRGGKGI+                  KA+KKE+VP
Sbjct: 78  EEFEKLMKIGEKEEDGIGEEEKKRQKRGGKGIM------------------KAKKKEDVP 119

Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKD 196
           KQVCVSRAPRGKKKSVTVVTGLS+FDIDLKVA+KFFGT+FACGSSVTG+DEIVIQGDVKD
Sbjct: 120 KQVCVSRAPRGKKKSVTVVTGLSTFDIDLKVAAKFFGTKFACGSSVTGEDEIVIQGDVKD 179

Query: 197 DLFDVIPEKWPEIDEDFIEDLGDLK 221
           DLFD+IPEKWPEIDED IEDLGD K
Sbjct: 180 DLFDIIPEKWPEIDEDSIEDLGDQK 204

Source: Gryllus firmus

Species: Gryllus firmus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
UNIPROTKB|F1NE92	201	DENR "Density-regulated protei	0.761	0.920	0.497	1.2e-47
UNIPROTKB|Q5ZJ39	198	DENR "Density-regulated protei	0.761	0.934	0.497	1.2e-47
UNIPROTKB|O43583	198	DENR "Density-regulated protei	0.765	0.939	0.5	5.4e-47
MGI|MGI:1915434	198	Denr "density-regulated protei	0.765	0.939	0.494	5.4e-47
RGD|1584200	195	Denr "density-regulated protei	0.740	0.923	0.492	1.1e-46
UNIPROTKB|Q2HJ47	198	DENR "Density-regulated protei	0.703	0.863	0.524	1.8e-46
UNIPROTKB|J9NSD0	275	DENR "Uncharacterized protein"	0.703	0.621	0.524	1.8e-46
ZFIN|ZDB-GENE-040718-450	208	denr "density-regulated protei	0.720	0.841	0.518	2.3e-46
UNIPROTKB|F1REW9	202	DENR "Uncharacterized protein"	0.773	0.930	0.479	4.8e-46
UNIPROTKB|E1BZC2	201	DENR "Density-regulated protei	0.761	0.920	0.485	1e-45

UNIPROTKB|F1NE92 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 98/197 (49%), Positives = 133/197 (67%)

Query:    26 DVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKL 85
             D +  + +G +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P+EF KL  +
Sbjct:    15 DCRGDIRSGARSDADYPLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLT-V 73

Query:    86 SGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSRA 144
                   E    E             A ++EE  KQ RGG+G +K +KK+ VP++V +++ 
Sbjct:    74 ENSPKQEAGVGEGQGT---------AGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKI 123

Query:   145 PRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE 204
             PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI E
Sbjct:   124 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE 183

Query:   205 KWPEIDEDFIEDLGDLK 221
             KWPE+D+D IEDLG++K
Sbjct:   184 KWPEVDDDSIEDLGEVK 200

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q5ZJ39 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 98/197 (49%), Positives = 133/197 (67%)

Query:    26 DVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKL 85
             D +  + +G +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P+EF KL  +
Sbjct:    12 DCRGDIRSGARSDADYPLRVLYCGVCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLT-V 70

Query:    86 SGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSRA 144
                   E    E             A ++EE  KQ RGG+G +K +KK+ VP++V +++ 
Sbjct:    71 ENSPKQEAGVGEGQGT---------AGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKI 120

Query:   145 PRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE 204
             PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI E
Sbjct:   121 PRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQE 180

Query:   205 KWPEIDEDFIEDLGDLK 221
             KWPE+D+D IEDLG++K
Sbjct:   181 KWPEVDDDSIEDLGEVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O43583 DENR "Density-regulated protein" [Homo sapiens (taxid:9606)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 99/198 (50%), Positives = 131/198 (66%)

Query:    25 SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
             +D K    N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  
Sbjct:    11 ADCKGDPRNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT- 69

Query:    85 LSGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSR 143
             +      E    E             A ++EE  KQ RGG+G +K +KK+ VP++V +++
Sbjct:    70 VENSPKQEAGISEGQGT---------AGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAK 119

Query:   144 APRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIP 203
              PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI 
Sbjct:   120 IPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQ 179

Query:   204 EKWPEIDEDFIEDLGDLK 221
             EKWPE+D+D IEDLG++K
Sbjct:   180 EKWPEVDDDSIEDLGEVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1915434 Denr "density-regulated protein" [Mus musculus (taxid:10090)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 98/198 (49%), Positives = 131/198 (66%)

Query:    25 SDVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVK 84
             +D K    N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  
Sbjct:    11 ADCKGDTKNSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTV 70

Query:    85 LSGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSR 143
              +    +   TE                ++EE  KQ RGG+G +K +KK+ VP++V +++
Sbjct:    71 ENSPKQETGITEGQG----------PVGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAK 119

Query:   144 APRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIP 203
              PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI 
Sbjct:   120 IPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQ 179

Query:   204 EKWPEIDEDFIEDLGDLK 221
             EKWPE+D+D IEDLG++K
Sbjct:   180 EKWPEVDDDSIEDLGEVK 197

GO:0003674 "molecular_function" evidence=ND

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006413 "translational initiation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1584200 Denr "density-regulated protein" [Rattus norvegicus (taxid:10116)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 93/189 (49%), Positives = 127/189 (67%)

Query:    33 NGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDE 92
             N  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  +       
Sbjct:    15 NSAKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVVPSPDKKS 74

Query:    93 DATEEXXXXXXXXXXIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSV 152
               TE           +V  +++ +  K  GG+G +K +KK+ VP++V +++ PR KKK V
Sbjct:    75 APTE--------GQRVVGQQEERKEKKSEGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYV 125

Query:   153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212
             T V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D
Sbjct:   126 TRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDD 185

Query:   213 FIEDLGDLK 221
              IEDLG++K
Sbjct:   186 SIEDLGEVK 194

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|Q2HJ47 DENR "Density-regulated protein" [Bos taurus (taxid:9913)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 96/183 (52%), Positives = 126/183 (68%)

Query:    40 NYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEXX 99
             +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  +      E    E  
Sbjct:    26 DYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT-VENSPKQEAGISEGQ 84

Query:   100 XXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGL 158
                        A ++EE  KQ RGG+G +K +KK+ VP++V +++ PR KKK VT V GL
Sbjct:    85 GT---------AGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYVTRVCGL 134

Query:   159 SSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218
             ++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG
Sbjct:   135 ATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLG 194

Query:   219 DLK 221
             ++K
Sbjct:   195 EVK 197

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NSD0 DENR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 96/183 (52%), Positives = 126/183 (68%)

Query:    40 NYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEXX 99
             +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL  +      E    E  
Sbjct:   103 DYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLT-VENSPKQEAGISEGQ 161

Query:   100 XXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGL 158
                        A ++EE  KQ RGG+G +K +KK+ VP++V +++ PR KKK VT V GL
Sbjct:   162 GT---------AGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYVTRVCGL 211

Query:   159 SSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218
             ++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI EKWPE+D+D IEDLG
Sbjct:   212 ATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQEKWPEVDDDSIEDLG 271

Query:   219 DLK 221
             ++K
Sbjct:   272 EVK 274

GO:0003743 "translation initiation factor activity" evidence=IEA

ZFIN|ZDB-GENE-040718-450 denr "density-regulated protein" [Danio rerio (taxid:7955)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 98/189 (51%), Positives = 127/189 (67%)

Query:    41 YPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLV-------KLSGDGGDED 93
             YP+ VLYCG CSLP EYCEY PE  KCK WLEKN P+ F KL        +  G GG ED
Sbjct:    25 YPLKVLYCGVCSLPAEYCEYMPEPAKCKQWLEKNFPDVFAKLTLGTAPKQESKGGGGGED 84

Query:    94 ATEEXXXXXXXXXXIVKARKKEEVPKQ-RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSV 152
                              A ++EE  KQ RGG+G +K +KK+ VP++V +++ PR KKK V
Sbjct:    85 G-----GGGRGRGEAPPAGEEEEKKKQKRGGRGQIK-QKKKTVPQKVTIAKIPRAKKKYV 138

Query:   153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212
             T V GL++FDI+LK A +FF  +F+CG+SVT +DEI+IQGD  DD+ DVI EKWPE+D+D
Sbjct:   139 TRVCGLATFDIELKEAQRFFAQKFSCGASVTAEDEIIIQGDFTDDIIDVIQEKWPEVDDD 198

Query:   213 FIEDLGDLK 221
              I+DLG++K
Sbjct:   199 SIDDLGEVK 207

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1REW9 DENR "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 95/198 (47%), Positives = 132/198 (66%)

Query:    26 DVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKL 85
             D K  L +  +   +YP+ VLYCG CSLP EYCEY P+  KC+ WLEKN P EF KL   
Sbjct:    12 DCKGDLKSNTKLDADYPLRVLYCGVCSLPTEYCEYMPDVAKCRQWLEKNFPNEFAKLTVE 71

Query:    86 SGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAP 145
             +    +   TE             + +KK++  + +GG+G +K +KK+ VP++V +++ P
Sbjct:    72 NSPKQEAGITEGQGTAGEE-----EEKKKQK--RDKGGRGQIK-QKKKTVPQKVTIAKIP 123

Query:   146 RGKKKSVTVVTGLSSF--DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIP 203
             R KKK VT V GL++F  +IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DVI 
Sbjct:   124 RAKKKYVTRVCGLATFVTEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDVIQ 183

Query:   204 EKWPEIDEDFIEDLGDLK 221
             EKWPE+D+D IEDLG++K
Sbjct:   184 EKWPEVDDDSIEDLGEVK 201

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|E1BZC2 DENR "Density-regulated protein" [Gallus gallus (taxid:9031)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 97/200 (48%), Positives = 132/200 (66%)

Query:    26 DVKKPLPNGPQEGVNYPISVLYCGN--CSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLV 83
             D +  + +G +   +YP+ VLYCG   CSLP EYCEY P+  KC+ WLEKN P+EF KL 
Sbjct:    12 DCRGDIRSGARSDADYPLRVLYCGGKFCSLPTEYCEYMPDVTKCRQWLEKNFPDEFAKLT 71

Query:    84 KLSGDGGDEDATEEXXXXXXXXXXIVKARKKEEVPKQRGGK--GIVKARKKEEVPKQVCV 141
              +      E    E             A ++EE  KQ+ GK  G +K +KK+ VP++V +
Sbjct:    72 -VENSPKQEAGVGEGQGT---------AGEEEEKKKQKRGKKRGQIK-QKKKTVPQKVTI 120

Query:   142 SRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDV 201
             ++ PR KKK VT V GL++F+IDLK A +FF  +F+CG+SVTG+DEI+IQGD  DD+ DV
Sbjct:   121 AKIPRAKKKYVTRVCGLATFEIDLKEAQRFFAQKFSCGASVTGEDEIIIQGDFTDDIIDV 180

Query:   202 IPEKWPEIDEDFIEDLGDLK 221
             I EKWPE+D+D IEDLG++K
Sbjct:   181 IQEKWPEVDDDSIEDLGEVK 200

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DFN7	DENR_XENTR	No assigned EC number	0.5054	0.7078	0.86	yes	N/A
Q6BH22	DENR_DEBHA	No assigned EC number	0.3351	0.6913	0.8888	yes	N/A
P0CR80	DENR_CRYNJ	No assigned EC number	0.3463	0.6543	0.8030	yes	N/A
P47089	DENR_YEAST	No assigned EC number	0.3554	0.6008	0.7373	yes	N/A
Q4WBL6	DENR_ASPFU	No assigned EC number	0.3405	0.7037	0.8814	yes	N/A
Q9NAH4	DENR_CAEEL	No assigned EC number	0.4527	0.7572	0.9583	yes	N/A
Q2HJ47	DENR_BOVIN	No assigned EC number	0.5107	0.6995	0.8585	yes	N/A
Q9CQJ6	DENR_MOUSE	No assigned EC number	0.495	0.7572	0.9292	yes	N/A
A2QHG9	DENR_ASPNC	No assigned EC number	0.3103	0.7201	0.8883	yes	N/A
A3LSY0	DENR_PICST	No assigned EC number	0.3496	0.6090	0.7589	yes	N/A
Q6DH65	DENR_DANRE	No assigned EC number	0.4892	0.7489	0.875	yes	N/A
Q2TVZ2	DENR_ASPOR	No assigned EC number	0.3298	0.7201	0.9020	yes	N/A
Q6CA08	DENR_YARLI	No assigned EC number	0.3604	0.6543	0.8457	yes	N/A
Q5ZJ39	DENR_CHICK	No assigned EC number	0.4874	0.7530	0.9242	yes	N/A
O42929	DENR_SCHPO	No assigned EC number	0.3661	0.7078	0.9052	yes	N/A
Q5RFP5	DENR_PONAB	No assigned EC number	0.4947	0.7242	0.8888	yes	N/A
O43583	DENR_HUMAN	No assigned EC number	0.49	0.7572	0.9292	yes	N/A
Q6FXQ4	DENR_CANGA	No assigned EC number	0.3214	0.6172	0.7653	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	243
TIGR01159	173	TIGR01159, DRP1, density-regulated protein DRP1	2e-57
cd11607	86	cd11607, DENR_C, C-terminal domain of DENR and rel	1e-39
pfam01253	74	pfam01253, SUI1, Translation initiation factor SUI	5e-20
cd00474	78	cd00474, eIF1_SUI1_like, Eukaryotic initiation fac	4e-12
COG0023	104	COG0023, SUI1, Translation initiation factor 1 (eI	1e-11
cd11567	76	cd11567, YciH_like, Homologs of eIF1/SUI1 includin	5e-07
TIGR01158	101	TIGR01158, SUI1_rel, translation initation factor	8e-07
cd11608	85	cd11608, eIF2D_C, C-terminal domain of eIF2D and r	1e-05
cd11566	84	cd11566, eIF1_SUI1, Eukaryotic initiation factor 1	4e-05
PRK00939	99	PRK00939, PRK00939, translation initiation factor	1e-04
PRK09019	108	PRK09019, PRK09019, translation initiation factor	0.004

>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1

 Score =  180 bits (458), Expect = 2e-57
 Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 11/180 (6%)

Query: 42  PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQ 101
           P+ VLYCG CSLP EYCE+  + ++CKVWL +N P+ + KL        + +A    + Q
Sbjct: 1   PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQ 60

Query: 102 KRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSF 161
           +  G       +K+ +  Q+  +     +KK+++P++V + R PR K+K VTV+ GL +F
Sbjct: 61  EEKG-------EKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETF 113

Query: 162 DIDLKVASKFFGTRFACGSSV----TGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 217
           DIDLK ASK F  +FA G SV    TG +EIVIQGDV DD+ D I EKWPE+ +  I+DL
Sbjct: 114 DIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDKDIKDL 173

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs. Length = 173

>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins

 Score =  131 bits (332), Expect = 1e-39
 Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 4/86 (4%)

Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQG 192
            +V + R  R K+K VT VTGL +F IDLK A+K F  +FACG+SVT      DEIVIQG
Sbjct: 1   SKVTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQG 60

Query: 193 DVKDDLFDVIPEKWPEIDEDFIEDLG 218
           DV DD+ D+I EKWPEIDED IE LG
Sbjct: 61  DVTDDIVDLILEKWPEIDEDNIEILG 86

DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86

>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1

 Score = 80.6 bits (200), Expect = 5e-20
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVK 195
            +++ + R  R   K+VTVVTGL  F IDLK  +K    +F CG +V   +EI IQGD +
Sbjct: 4   DQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKDGEEIEIQGDHR 63

Query: 196 DDLFDVIPEKW 206
           D + D++ ++ 
Sbjct: 64  DKVKDLLEKEG 74

Length = 74

>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 141 VSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD-DEIVIQGDVKDDLF 199
           +    R   K VT V GL ++ IDL+  +     +  CG SV G+  EI IQGD  D + 
Sbjct: 4   IKVEQRSGGKKVTKVEGLPAY-IDLRKLADELKKKLGCGGSVEGEKMEIEIQGDHTDQII 62

Query: 200 DVIPEKWPEID 210
             + EK  + D
Sbjct: 63  VALEEKGIDKD 73

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78

>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI--- 202
           R K K+VT++ GL   DIDLK  +K    + ACG +V  D EI IQGD +D + +++   
Sbjct: 36  RRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVK-DGEIEIQGDHRDKVKELLIKK 94

Query: 203 --PEKWPEID 210
               K   I+
Sbjct: 95  GFKVKNIGIE 104

Length = 104

>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDL 198
               K+VTV+ GL   + DLK  +K    +  CG +V  D EI +QGD ++ +
Sbjct: 11  GRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVK-DGEIELQGDHREKI 62

Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76

>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 129 ARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE 187
           A+ KE+  + V + R  RG+K K VT++ GL   DIDLK  +K   ++  CG +V  D  
Sbjct: 18  AKPKED--QVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVK-DGV 74

Query: 188 IVIQGDVKDDLFDVIPEK 205
           I IQGD +D + D++ +K
Sbjct: 75  IEIQGDHRDRVKDLLEKK 92

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101

>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT------GDDEIVIQGDVKDDLF 199
           R   K VT+++GL SF ID +  +K    + A  +SV+         E+ +QG+    + 
Sbjct: 9   RQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQGNQVKFVA 68

Query: 200 DVIPEKW 206
            ++ EK+
Sbjct: 69  KLLTEKY 75

eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85

>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE----IVIQGD 193
           R  +K++T V GL   + DLK   K F   FAC  +V  D E    I +QGD
Sbjct: 10  RNGRKTLTTVQGLPE-EFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60

eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84

>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 150 KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGD----VKDDLFD 200
           K VT++ G+   DIDLK  +K   ++ ACG +V  D  I +QGD    VK+ L  
Sbjct: 37  KEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVK-DGRIELQGDHRERVKELLIK 90

Length = 99

>gnl|CDD|181613 PRK09019, PRK09019, translation initiation factor Sui1; Validated

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 15/88 (17%)

Query: 113 KKEEVPKQR-GGKGIVKARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASK 170
            +E+   +R  G GIV+            + R   G+K K V ++TGL   D +LK  + 
Sbjct: 18  DEEKAKPERPKGDGIVR------------IQRQTSGRKGKGVCLITGLDLDDAELKKLAA 65

Query: 171 FFGTRFACGSSVTGDDEIVIQGDVKDDL 198
               +  CG +V  D  I IQGD +D L
Sbjct: 66  ELKKKCGCGGAVK-DGVIEIQGDKRDLL 92

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	100.0
KOG3239|consensus	193		100.0
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	99.9
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	99.89
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	99.88
PRK00939	99	translation initiation factor Sui1; Reviewed	99.87
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	99.84
TIGR01160	110	SUI1_MOF2 translation initiation factor SUI1, euka	99.84
PRK06824	118	translation initiation factor Sui1; Validated	99.77
PRK07451	115	translation initiation factor Sui1; Validated	99.76
PRK09019	108	translation initiation factor Sui1; Validated	99.75
KOG1770|consensus	112		99.66
KOG2522|consensus	560		99.64
PF05046	87	Img2: Mitochondrial large subunit ribosomal protei	97.49
smart00653	110	eIF2B_5 domain present in translation initiation f	92.66
KOG4034|consensus	169		92.02
PRK03988	138	translation initiation factor IF-2 subunit beta; V	90.98
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	90.6
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	90.11
PRK12336	201	translation initiation factor IF-2 subunit beta; P	86.73

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=100.00  E-value=7.1e-54  Score=367.37  Aligned_cols=168  Identities=47%  Similarity=0.857  Sum_probs=135.3

Q ss_pred             CeeeEEcCCCCCCccccccCCChHHHHHHHHhhCcHHHHHhhhccCCCC-CCchhHHHHHHhhcCCchhhhhhhhccccc
Q psy14509         42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG-DEDATEEKKRQKRGGKGIVKARKKEEVPKQ  120 (243)
Q Consensus        42 P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pel~~~ly~~~~~~~-~~~~~~~~~~q~k~~k~~~k~~~kee~~~~  120 (243)
                      |++|+||+|||||+||||||+++++|++||++||||||++||..+.... ...++++.+++..+.++..+.+++....+.
T Consensus         1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~   80 (173)
T TIGR01159         1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQEEKGEKDLLGIQKAQEAREG   80 (173)
T ss_pred             CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcccchhccccchhhHHHHhhhhhhhhHHHhhhhhhhh
Confidence            7899999999999999999999999999999999999999984322111 111334444444444444333322222211


Q ss_pred             cCCCcchhhhccCCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchh
Q psy14509        121 RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKD  196 (243)
Q Consensus       121 ~~~k~~~~~kKk~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~  196 (243)
                      +        +++++..++|+|++++|++||+||+|+||+.|++|++++||.|+++||||+||+    ++++|+|||||++
T Consensus        81 ~--------~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~  152 (173)
T TIGR01159        81 G--------KKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMD  152 (173)
T ss_pred             h--------hhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHH
Confidence            1        233567999999999999999999999999999999999999999999999886    4689999999999


Q ss_pred             HHHHhhchhCCCCCcCceeec
Q psy14509        197 DLFDVIPEKWPEIDEDFIEDL  217 (243)
Q Consensus       197 ~V~e~L~ek~~gIp~~~I~~~  217 (243)
                      +|.++|.++||+||+++|+++
T Consensus       153 ~v~e~L~~~~~~v~e~~I~~~  173 (173)
T TIGR01159       153 DIEDYIHEKWPEVGDKDIKDL  173 (173)
T ss_pred             HHHHHHHHHcCCCCHHHeeeC
Confidence            999999999999999999874

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>KOG3239|consensus

Probab=100.00  E-value=5.6e-52  Score=354.35  Aligned_cols=167  Identities=59%  Similarity=0.982  Sum_probs=143.5

Q ss_pred             eeEEcCCCCCCccccccCCChHHHHHHHHhhCcHHHHHhhhccCCC--------C-CCchhHHHHHHhhcCCchhhhhhh
Q psy14509         44 SVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDG--------G-DEDATEEKKRQKRGGKGIVKARKK  114 (243)
Q Consensus        44 ~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pel~~~ly~~~~~~--------~-~~~~~~~~~~q~k~~k~~~k~~~k  114 (243)
                      +|+||||||||+|||||+|.+++||+||++||||+|++||...+..        . +.+++.+++.|++++++..+.   
T Consensus        11 ~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~qe~~~s~~~~a~G~~~e~k~ek~~gk~~k~~---   87 (193)
T KOG3239|consen   11 SVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPKQEVEASTAEGADGEADEKKKEKRGGKGQKKQ---   87 (193)
T ss_pred             ceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChhhhhcccccccccCCchhhHHHhccccchhhh---
Confidence            6999999999999999999999999999999999999999543321        1 234457888899999876442   


Q ss_pred             hccccccCCCcchhhhccCCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeec----CCEEEE
Q psy14509        115 EEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVI  190 (243)
Q Consensus       115 ee~~~~~~~k~~~~~kKk~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~I  190 (243)
                       +...++        ++++..+++|.|.++.|++||.||+|+||+.|+|||+++||.|.++||||+||++    .+||+|
T Consensus        88 -~~~~~~--------e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvI  158 (193)
T KOG3239|consen   88 -ENRSQR--------EKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVI  158 (193)
T ss_pred             -hhHHHH--------HHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEE
Confidence             222222        2334578999999999999999999999999999999999999999999999996    799999


Q ss_pred             cCCchhHHHHhhchhCCCCCcC--ceeecCCcCC
Q psy14509        191 QGDVKDDLFDVIPEKWPEIDED--FIEDLGDLKS  222 (243)
Q Consensus       191 QGD~~~~V~e~L~ek~~gIp~~--~I~~~~~kKk  222 (243)
                      |||+.++|.++|.++||++|.+  .|+.++++||
T Consensus       159 QGDv~dDi~d~I~ekw~ev~ed~~~IED~~~kKk  192 (193)
T KOG3239|consen  159 QGDVKDDIFDFIPEKWPEVPEDDVKIEDLGDKKK  192 (193)
T ss_pred             eccchHHHHHHHHHhcccCCcccceeecchhhhc
Confidence            9999999999999999999999  7888888776

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=3.9e-24  Score=170.49  Aligned_cols=79  Identities=37%  Similarity=0.490  Sum_probs=76.0

Q ss_pred             CCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCce
Q psy14509        135 VPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI  214 (243)
Q Consensus       135 ~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I  214 (243)
                      ..+.|+|++++|++||.||+|+||+.+++||++||+.|+++||||||| ++++|+|||||++.|.++|.++  |++.++|
T Consensus        25 ~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-k~~~IeiQGdhr~~v~~~L~~~--G~k~k~i  101 (104)
T COG0023          25 GDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-KDGEIEIQGDHRDKVKELLIKK--GFKVKNI  101 (104)
T ss_pred             cCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-cCCEEEEeChHHHHHHHHHHHc--CCchhhc
Confidence            478999999999999999999999999999999999999999999999 8889999999999999999997  9999999


Q ss_pred             ee
Q psy14509        215 ED  216 (243)
Q Consensus       215 ~~  216 (243)
                      .+
T Consensus       102 ~~  103 (104)
T COG0023         102 GI  103 (104)
T ss_pred             cc
Confidence            75

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=99.89  E-value=3.7e-23  Score=156.69  Aligned_cols=76  Identities=30%  Similarity=0.388  Sum_probs=72.5

Q ss_pred             cEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCceee
Q psy14509        138 QVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIED  216 (243)
Q Consensus       138 ~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~  216 (243)
                      .|+|++++|++||.||+|+||+.|++|++++|+.|+++||||||| ++++|+|||||+++|.++|.++  |++.++|.+
T Consensus         1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv-~~~~I~lQGD~r~~v~~~L~~~--g~~~~~i~i   76 (77)
T cd00474           1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTV-KDEVIELQGDQRKKIKEFLIKM--GFAKDNIKI   76 (77)
T ss_pred             CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEE-ecCEEEEeCcHHHHHHHHHHHc--CCCHHHeEe
Confidence            389999999999999999999999999999999999999999999 6799999999999999999998  999988875

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=99.88  E-value=1.1e-22  Score=154.69  Aligned_cols=76  Identities=42%  Similarity=0.634  Sum_probs=65.9

Q ss_pred             CCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchhHHHHhhchhCCCCC
Q psy14509        135 VPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEID  210 (243)
Q Consensus       135 ~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~~V~e~L~ek~~gIp  210 (243)
                      ..+.|+|++++|++||+||+|+||+.|++|+++||+.|+++|||||||.    ++++|+|||||+++|.++|.++| ++|
T Consensus         3 ~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~~~   81 (83)
T PF01253_consen    3 EPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-GIP   81 (83)
T ss_dssp             -TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-SSE
T ss_pred             CCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-CCC
Confidence            4789999999999999999999999999999999999999999999996    36789999999999999999997 555


Q ss_pred             c
Q psy14509        211 E  211 (243)
Q Consensus       211 ~  211 (243)
                      +
T Consensus        82 k   82 (83)
T PF01253_consen   82 K   82 (83)
T ss_dssp             -
T ss_pred             C
Confidence            4

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=99.87  E-value=1.5e-22  Score=160.06  Aligned_cols=77  Identities=30%  Similarity=0.513  Sum_probs=73.6

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCcee
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE  215 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~  215 (243)
                      .+.|+|++++|++||.||+|+||+.|++|++++|+.|+++||||||| ++++|+|||||+++|.++|.+.  |||.++|+
T Consensus        23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-k~~~I~iQGD~r~~v~~~L~~~--G~~~~~i~   99 (99)
T PRK00939         23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-KDGRIELQGDHRERVKELLIKM--GFSEENIE   99 (99)
T ss_pred             CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-ECCEEEEeCcHHHHHHHHHHHc--CCChhhcC
Confidence            48899999999999999999999999999999999999999999999 7889999999999999999986  99999985

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=99.84  E-value=6.5e-21  Score=151.09  Aligned_cols=77  Identities=36%  Similarity=0.544  Sum_probs=72.9

Q ss_pred             CCcEEEEEeee-CCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCce
Q psy14509        136 PKQVCVSRAPR-GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI  214 (243)
Q Consensus       136 ~~~I~I~~e~R-~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I  214 (243)
                      .+.|+|++++| +++|.||+|+||+.+++|++++|+.|+++||||||| ++++|+|||||+++|.++|.++  |++.++|
T Consensus        23 ~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-k~~~IeiQGD~~~~v~~~L~~~--G~~~k~~   99 (101)
T TIGR01158        23 DQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-KDGVIEIQGDHRDRVKDLLEKK--GFKVKLI   99 (101)
T ss_pred             CceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-eCCEEEEeCcHHHHHHHHHHHc--CCCeeec
Confidence            78899999999 789999999999999999999999999999999999 8899999999999999999997  9998876


Q ss_pred             e
Q psy14509        215 E  215 (243)
Q Consensus       215 ~  215 (243)
                      .
T Consensus       100 ~  100 (101)
T TIGR01158       100 G  100 (101)
T ss_pred             C
Confidence            3

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic

Probab=99.84  E-value=6.8e-21  Score=153.33  Aligned_cols=81  Identities=26%  Similarity=0.434  Sum_probs=73.0

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeec----CCEEEEcCCchhHHHHhhchhCCCCCc
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPEIDE  211 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~IQGD~~~~V~e~L~ek~~gIp~  211 (243)
                      ...|+|++++|++||.||+|+||+. .+||++++|.|+++|||||||.+    +++|+|||||+++|.++|.++. .+++
T Consensus        25 ~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~~  102 (110)
T TIGR01160        25 SNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLKK  102 (110)
T ss_pred             cceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCCH
Confidence            5689999999999999999999994 89999999999999999999963    2689999999999999999983 3688


Q ss_pred             CceeecC
Q psy14509        212 DFIEDLG  218 (243)
Q Consensus       212 ~~I~~~~  218 (243)
                      ++|.+.+
T Consensus       103 ~~i~vhg  109 (110)
T TIGR01160       103 DQIKIHG  109 (110)
T ss_pred             HHeeecC
Confidence            8998753

Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.

>PRK06824 translation initiation factor Sui1; Validated

Probab=99.77  E-value=8.8e-19  Score=142.66  Aligned_cols=74  Identities=28%  Similarity=0.332  Sum_probs=67.8

Q ss_pred             CCcEEEEEeee-CCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509        136 PKQVCVSRAPR-GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED  212 (243)
Q Consensus       136 ~~~I~I~~e~R-~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~  212 (243)
                      .+.|+|+++++ +++|.||+|+||+....|+++|+|.||++||||||| ++++|+|||||+++|.++|.+.  |+...
T Consensus        40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-kd~~IeiQGD~r~~v~~~L~~~--G~~~k  114 (118)
T PRK06824         40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-KDGVIEIQGDHVELLLAELLKR--GFKAK  114 (118)
T ss_pred             CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-ecCEEEEcCcHHHHHHHHHHHC--CCeEe
Confidence            56899988866 568999999999999999999999999999999999 8899999999999999999998  77654

>PRK07451 translation initiation factor Sui1; Validated

Probab=99.76  E-value=1e-18  Score=141.70  Aligned_cols=74  Identities=26%  Similarity=0.357  Sum_probs=66.0

Q ss_pred             CCcEEEEEee-eCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509        136 PKQVCVSRAP-RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED  212 (243)
Q Consensus       136 ~~~I~I~~e~-R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~  212 (243)
                      .+.|+|++++ ++++|.||+|.||+.++.|+++|+|.||++||||||| ++++|+|||||+++|.+||.++  |+...
T Consensus        37 ~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-kd~~IelQGD~r~~v~~~L~~~--Gf~~k  111 (115)
T PRK07451         37 QQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-KDNTIEIQGDHRQKILEILIKL--GYKAK  111 (115)
T ss_pred             ceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-cCCEEEEcCcHHHHHHHHHHHC--CCeEe
Confidence            6778887654 3357999999999999999999999999999999999 8999999999999999999998  77654

>PRK09019 translation initiation factor Sui1; Validated

Probab=99.75  E-value=2.2e-18  Score=138.44  Aligned_cols=74  Identities=32%  Similarity=0.448  Sum_probs=66.6

Q ss_pred             CCcEEEEEeeeC-CCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509        136 PKQVCVSRAPRG-KKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED  212 (243)
Q Consensus       136 ~~~I~I~~e~R~-krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~  212 (243)
                      .+.|+|++++++ ++|.||+|+||+....|+++|||.||++||||||| ++++|+|||||+++|.++|.++  |+...
T Consensus        30 ~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-k~~~IelQGD~r~~v~~~L~~~--Gf~~k  104 (108)
T PRK09019         30 DGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-KDGVIEIQGDKRDLLKSLLEAK--GMKVK  104 (108)
T ss_pred             CceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-EcCEEEEcCcHHHHHHHHHHHC--CCeEE
Confidence            678889877554 47999999999989999999999999999999999 8899999999999999999988  77543

>KOG1770|consensus

Probab=99.66  E-value=2.3e-16  Score=125.99  Aligned_cols=81  Identities=27%  Similarity=0.432  Sum_probs=73.4

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecC----CEEEEcCCchhHHHHhhchhCCCCCc
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKWPEIDE  211 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~----~eI~IQGD~~~~V~e~L~ek~~gIp~  211 (243)
                      ...|||++++|+|||++|+|.|+.. ..|++.+.+.||+.|||+|+|.++    +.|++|||++++|.+||.... .+.+
T Consensus        27 ~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~k~  104 (112)
T KOG1770|consen   27 EKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LVKK  104 (112)
T ss_pred             cceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-cccc
Confidence            4489999999999999999999997 689999999999999999999853    579999999999999999885 6888


Q ss_pred             CceeecC
Q psy14509        212 DFIEDLG  218 (243)
Q Consensus       212 ~~I~~~~  218 (243)
                      ++|.+.+
T Consensus       105 ~~ikihG  111 (112)
T KOG1770|consen  105 DNIKIHG  111 (112)
T ss_pred             cceeecC
Confidence            8888754

>KOG2522|consensus

Probab=99.64  E-value=1.3e-16  Score=153.37  Aligned_cols=90  Identities=20%  Similarity=0.306  Sum_probs=85.3

Q ss_pred             CCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee-----cCCEEEEcCCchhHHHHhhchhCC
Q psy14509        133 EEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT-----GDDEIVIQGDVKDDLFDVIPEKWP  207 (243)
Q Consensus       133 ~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~-----k~~eI~IQGD~~~~V~e~L~ek~~  207 (243)
                      +++.++|.|..++|.|||.||+|+||+.|+||+..+|..|+++|+|+.||.     ++-+|+|||+|.+.|.++|.+.| 
T Consensus       463 Kgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~y-  541 (560)
T KOG2522|consen  463 KGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSY-  541 (560)
T ss_pred             cCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhh-
Confidence            678999999999999999999999999999999999999999999999996     45699999999999999999999 


Q ss_pred             CCCcCceeecCCcCCC
Q psy14509        208 EIDEDFIEDLGDLKSP  223 (243)
Q Consensus       208 gIp~~~I~~~~~kKk~  223 (243)
                      |||+++|+++++.+|+
T Consensus       542 gipkK~I~gleka~Kk  557 (560)
T KOG2522|consen  542 GIPKKWIDGLEKAKKK  557 (560)
T ss_pred             CCCHHHHhHHHHhhcc
Confidence            9999999999988665

>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.49  E-value=0.00041  Score=53.71  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CCcEEEEEeeeC-CCceEEEEeccCCCCchHHHHHHHHcccccc------ceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509        136 PKQVCVSRAPRG-KKKSVTVVTGLSSFDIDLKVASKFFGTRFAC------GSSVT-GDDEIVIQGDVKDDLFDVIPEK  205 (243)
Q Consensus       136 ~~~I~I~~e~R~-krK~VTvV~GLe~f~idlk~lAK~LkkkfAC------GgSV~-k~~eI~IQGD~~~~V~e~L~ek  205 (243)
                      ...+-|....++ |++.+|+|+..+.   |+..|.++|++.+.=      ...|. -.+.|+|+||+..+|.+||.++
T Consensus        11 ~~~LPVY~~~k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~   85 (87)
T PF05046_consen   11 SGNLPVYLDIKNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEK   85 (87)
T ss_pred             CCcccEEEEEeCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHC
Confidence            334445554444 4699999999997   788888888888752      33443 3579999999999999999887

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=92.66  E-value=0.17  Score=40.94  Aligned_cols=67  Identities=15%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .++..+.++.++    -|+|.+|...    .-+++-+.|.|..-+|+.|++.+++..+|+|.+..+..+-+..+|
T Consensus         6 ~p~~~v~~eG~~----kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~y   76 (110)
T smart00653        6 MPPPQVLREGKG----KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRY   76 (110)
T ss_pred             cCCCeEEEEcCC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHH
Confidence            344556655554    6899998754    456899999999999999999655899999998876666555544

>KOG4034|consensus

Probab=92.02  E-value=0.34  Score=42.04  Aligned_cols=68  Identities=21%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVT-GDDEIVIQGDVKDDLFDVIPEK  205 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~-k~~eI~IQGD~~~~V~e~L~ek  205 (243)
                      .-+|-..+..| |+|.+|+|+..+..    ..||.......-++-=| +-|. -.+.|.+-||+.+.|.++|.++
T Consensus        95 nlPVYl~~k~~-G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~VnelsgqI~~~g~~v~~vr~~L~eK  167 (169)
T KOG4034|consen   95 NLPVYLDYKQR-GNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNELSGQIVLKGNHVDTVREWLQEK  167 (169)
T ss_pred             CcceEEeeecC-CcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhhcceEEEeCChHHHHHHHHHHc
Confidence            44455554444 58999999999974    23455555444443222 2232 2378999999999999999998

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=90.98  E-value=0.26  Score=41.41  Aligned_cols=65  Identities=12%  Similarity=0.280  Sum_probs=50.7

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .++..+.++.   +|  |+|.+|...    .-+.+-+.|.|.+-+|+.|++ +++..+|+|.+.....+-+..+|
T Consensus        30 ~p~~~v~~eG---~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~~~lii~G~~~~~~i~~~L~~y   98 (138)
T PRK03988         30 VPKPDVRIEG---NR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EGGRLILQGKFSPRVINEKIDRY   98 (138)
T ss_pred             CCCCeEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cCCEEEEEEeeCHHHHHHHHHHH
Confidence            4555666555   34  999998764    356899999999999999999 78999999998877666555544

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=90.60  E-value=0.29  Score=40.92  Aligned_cols=65  Identities=11%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .++..+.++.   +|  |+|.+|...    .-+.+-+.|.|..-+|+.|++ .++...|+|.+.....+-+..+|
T Consensus        25 mP~~~v~~eG---~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-~~~rlii~G~~~~~~i~~~L~~y   93 (133)
T TIGR00311        25 VPKAYIVIEG---NR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-EGGRLILQGKFTHFLLNERIEDY   93 (133)
T ss_pred             CCCceEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-cCCEEEEEeecCHHHHHHHHHHH
Confidence            4555555554   34  999998754    356899999999999999999 67899999999887766555554

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=90.11  E-value=0.24  Score=40.89  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=48.9

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK  205 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek  205 (243)
                      .+++.|.++.+    .=|+|.+|...    .-+++-+++.|..-+|+.|++.+++..+|+|.|..+-.+-+..+
T Consensus        19 mP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~   88 (125)
T PF01873_consen   19 MPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDK   88 (125)
T ss_dssp             CCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHH
T ss_pred             cCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHH
Confidence            56666776665    45889998754    34799999999999999999965599999999876554444433

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=86.73  E-value=0.87  Score=40.21  Aligned_cols=65  Identities=11%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .++..+.++.+     -|+|.+|...    .-+.+-+.|.|..-||+.|++ .++...|+|.|.....+-+..+|
T Consensus        26 ~p~~~v~~eG~-----kT~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-~~~~~ii~G~~~~~~i~~~l~~y   94 (201)
T PRK12336         26 IPEPKIFIEGK-----TTILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-EGGRAVFNGKFTEEDIQAAIDAY   94 (201)
T ss_pred             cCCceEEEEcC-----cEEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-cCCEEEEEeeeCHHHHHHHHHHH
Confidence            45555665553     2999998764    356899999999999999999 67899999998876666555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	1e-14
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	1e-14
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	2e-14
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	9e-13

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Length = 108

 Score = 67.2 bits (164), Expect = 1e-14
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQG 192
             + +    R  +K++T V G+   + DLK   K     FAC  ++       + I +QG
Sbjct: 24  NYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQG 82

Query: 193 DVKDDLFDVIPEKWPEIDEDFIE 215
           D +  + + +  +   + +  I+
Sbjct: 83  DQRAKVCEFMISQLG-LQKKNIK 104

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1 Length = 126

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQ 191
              + +    R  +K++T V G++  D D K   K F  +FAC  +V       + I +Q
Sbjct: 41  EDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQ 99

Query: 192 GDVKDDLFDVIPEK 205
           GD + ++   + E 
Sbjct: 100 GDQRKNICQFLVEI 113

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1 Length = 116

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 130 RKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIV 189
           R K +   ++    + R  K  V ++TG+   D +L   +     +  CG +V  D  I 
Sbjct: 26  RPKGDGVVRIQRQTSGRKGK-GVCLITGVDLDDAELTKLAAELKKKCGCGGAVK-DGVIE 83

Query: 190 IQGDVKDDLFDVIPEK 205
           IQGD +D L  ++  K
Sbjct: 84  IQGDKRDLLKSLLEAK 99

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Length = 101

 Score = 61.8 bits (150), Expect = 9e-13
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 129 ARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE- 187
               ++    + +    R  +K  T V G+   + D +   K++    +C +++  +DE 
Sbjct: 9   ENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPP-EFDYEKIMKYWKKWLSCNATIVEEDEG 67

Query: 188 ---IVIQGDVKDDLFDVIPEKWPEIDEDFIE 215
              I + GD ++ +   + E+      D I 
Sbjct: 68  KKVIKLNGDHRNQIQQFLSEEG-IAAVDNIT 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
2xzm_F	101	EIF1; ribosome, translation; 3.93A {Tetrahymena th	99.89
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	99.88
1d1r_A	116	Hypothetical 11.4 KD protein YCIH in PYRF-OSMB int	99.86
2if1_A	126	EIF1, SUI1; translation initiation factor; NMR {Ho	99.85
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	88.54
1nee_A	138	EIF-2-beta, probable translation initiation factor	87.3
2d74_B	148	Translation initiation factor 2 beta subunit; prot	84.13
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	81.71
1k8b_A	52	EIF-2-beta, probable translation initiation factor	80.6

>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F

Probab=99.89  E-value=6.8e-24  Score=167.08  Aligned_cols=79  Identities=20%  Similarity=0.427  Sum_probs=74.0

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCC-----EEEEcCCchhHHHHhhchhCCCC-
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDD-----EIVIQGDVKDDLFDVIPEKWPEI-  209 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~-----eI~IQGD~~~~V~e~L~ek~~gI-  209 (243)
                      .+.|+|++++|++||.||+|+||+ +++|+++|||.|+++|||||||. ++     +|+|||||+++|.++|.++  |+ 
T Consensus        16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~-~~~~~g~~I~iQGD~r~~v~~~L~~~--G~~   91 (101)
T 2xzm_F           16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIV-EEDEGKKVIKLNGDHRNQIQQFLSEE--GIA   91 (101)
T ss_dssp             SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEE-ECSTTCEEEEEESCCHHHHHHHHHHH--SSS
T ss_pred             CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEe-cCCCCceEEEEeCcHHHHHHHHHHHc--CCC
Confidence            678999999999999999999999 99999999999999999999995 33     9999999999999999998  66 


Q ss_pred             CcCceeecC
Q psy14509        210 DEDFIEDLG  218 (243)
Q Consensus       210 p~~~I~~~~  218 (243)
                      |+++|++.+
T Consensus        92 ~~~~I~vhg  100 (101)
T 2xzm_F           92 AVDNITIHG  100 (101)
T ss_dssp             CTTTEEECC
T ss_pred             CHHHEEEcC
Confidence            999999865

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.1e-23  Score=164.17  Aligned_cols=82  Identities=23%  Similarity=0.423  Sum_probs=75.3

Q ss_pred             CCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCC-----EEEEcCCchhHHHHhhchhCCC
Q psy14509        134 EVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDD-----EIVIQGDVKDDLFDVIPEKWPE  208 (243)
Q Consensus       134 ~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~-----eI~IQGD~~~~V~e~L~ek~~g  208 (243)
                      +..+.|+|++++|++||.||+|+||+. ++|+++|||.|+++|||||||. ++     +|+|||||+++|.++|.++. .
T Consensus        21 ~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~-~~~~~g~~I~iQGD~r~~v~~~L~~~g-~   97 (108)
T 2ogh_A           21 ATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIV-KDPEMGEIIQLQGDQRAKVCEFMISQL-G   97 (108)
T ss_dssp             CCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEE-CCTTSSCEEEEESSCHHHHHHHHHHHH-T
T ss_pred             CCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEe-cCCCCceEEEEcCCHHHHHHHHHHHcC-C
Confidence            357899999999999999999999997 8999999999999999999995 44     99999999999999999994 5


Q ss_pred             CCcCceeecC
Q psy14509        209 IDEDFIEDLG  218 (243)
Q Consensus       209 Ip~~~I~~~~  218 (243)
                      +|+++|++.+
T Consensus        98 ~~~~~I~vhg  107 (108)
T 2ogh_A           98 LQKKNIKIHG  107 (108)
T ss_dssp             SCCSCEEECC
T ss_pred             CCHHHEEEcC
Confidence            6999999875

>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1

Probab=99.86  E-value=3.3e-22  Score=161.08  Aligned_cols=80  Identities=26%  Similarity=0.383  Sum_probs=74.3

Q ss_pred             CCcEEEEEeeeCCC--ceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCc
Q psy14509        136 PKQVCVSRAPRGKK--KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDF  213 (243)
Q Consensus       136 ~~~I~I~~e~R~kr--K~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~  213 (243)
                      .+.|+|+++ |++|  |.||+|+||+.|++|+++|||.|+++||||||| ++++|+|||||+++|.++|.++  |++.++
T Consensus        30 ~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV-k~~~IeiQGD~r~~i~~~L~~~--G~~vk~  105 (116)
T 1d1r_A           30 DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-KDGVIEIQGDKRDLLKSLLEAK--GMKVKL  105 (116)
T ss_dssp             CCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-CSSCEEECSCCHHHHHHHHHHH--TCEECC
T ss_pred             CCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE-cCCEEEEeCcHHHHHHHHHHHc--CCCcce
Confidence            688999998 7666  999999999999999999999999999999999 7899999999999999999999  899999


Q ss_pred             eeecCC
Q psy14509        214 IEDLGD  219 (243)
Q Consensus       214 I~~~~~  219 (243)
                      |+.++-
T Consensus       106 i~~~~~  111 (116)
T 1d1r_A          106 AGGLEH  111 (116)
T ss_dssp             CCCCC-
T ss_pred             eccccc
Confidence            988763

>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1

Probab=99.85  E-value=3.5e-22  Score=162.94  Aligned_cols=82  Identities=26%  Similarity=0.461  Sum_probs=74.6

Q ss_pred             CCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecC----CEEEEcCCchhHHHHhhchhCCCC
Q psy14509        134 EVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKWPEI  209 (243)
Q Consensus       134 ~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~----~eI~IQGD~~~~V~e~L~ek~~gI  209 (243)
                      +..+.|+|++++|+|||.||+|+||+. ++|+++|||.|+++|||||||.++    ++|+|||||+++|.++|.++  |+
T Consensus        39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~--G~  115 (126)
T 2if1_A           39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI--GL  115 (126)
T ss_dssp             SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH--TS
T ss_pred             CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc--CC
Confidence            357889999999999999999999998 899999999999999999999532    49999999999999999998  67


Q ss_pred             -CcCceeecC
Q psy14509        210 -DEDFIEDLG  218 (243)
Q Consensus       210 -p~~~I~~~~  218 (243)
                       ++++|++.+
T Consensus       116 ~~~~~I~vhg  125 (126)
T 2if1_A          116 AKDDQLKVHG  125 (126)
T ss_dssp             SCTTTEECCC
T ss_pred             CChhhEEeeC
Confidence             789998764

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.54  E-value=0.2  Score=41.84  Aligned_cols=69  Identities=12%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVT-GDDEIVIQGDVKDDLFDVIPEK  205 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~-k~~eI~IQGD~~~~V~e~L~ek  205 (243)
                      .+++.+.++.++.+ .-|+|.+|...    .=+++-+.|.|..-+++.|++. +++..+|+|.|.....+-+...
T Consensus        25 mP~~~v~~eG~gnG-~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~~~~~i~~~L~~   98 (157)
T 2e9h_A           25 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDG   98 (157)
T ss_dssp             EECCCEEECSSSSS-CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEBCCCHHHHHHHHHH
T ss_pred             cCCCeEEEeccCCc-cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence            45566777777644 46888888653    3468889999999999999997 5899999999887666555443

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=87.30  E-value=0.14  Score=41.89  Aligned_cols=65  Identities=12%  Similarity=0.190  Sum_probs=48.1

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .+++.+.++   |+|  |+|.+|...    .=+++-+.|.|..-+|+.|++. ++..+|+|.|...-.+-+...|
T Consensus        30 mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~y   98 (138)
T 1nee_A           30 VPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-GGRAILQGKFTHFLINERIEDY   98 (138)
T ss_dssp             CSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-TTTEEEESSCSSSHHHHHHHHH
T ss_pred             cCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHH
Confidence            344444444   345  999999764    3468899999999999999995 8899999998776555444443

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=84.13  E-value=0.55  Score=38.82  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=48.3

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK  205 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek  205 (243)
                      .+++.+.++.   +|  |+|.+|...    .=+++-+.|.|..-+|+.|++. ++..+|+|.+.....+-+...
T Consensus        32 mP~~~v~~eG---kK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~   99 (148)
T 2d74_B           32 VPGALVTIEG---NK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-GRRVVLQGRFTPYLIANKLKK   99 (148)
T ss_dssp             CCCCCEEEET---TE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-TTEEEESSCCCHHHHHHHHHH
T ss_pred             cCCCeEEEec---Ce--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHH
Confidence            4555555554   33  999998754    3458889999999999999995 899999999877666555443

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}

Probab=81.71  E-value=0.26  Score=41.73  Aligned_cols=70  Identities=11%  Similarity=0.278  Sum_probs=51.5

Q ss_pred             CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeec-CCEEEEcCCchhHHHHhhchhC
Q psy14509        136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTG-DDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k-~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      .+++.+.++.++.+ .-|+|.+|...    .=+++-+.|.|..-+|+.|++.+ ++..+|+|.|....++-|...|
T Consensus        18 mP~~~v~~EG~gnG-~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~y   92 (170)
T 2g2k_A           18 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF   92 (170)
T ss_dssp             CCCCCCEEESCTTT-CEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHHH
T ss_pred             CCCCeEEEeccCCc-cEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHH
Confidence            56777888888644 45778777643    22466677888999999999963 7899999998876666555443

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1

Probab=80.60  E-value=0.79  Score=31.55  Aligned_cols=45  Identities=9%  Similarity=0.245  Sum_probs=36.6

Q ss_pred             eCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCC
Q psy14509        146 RGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGD  193 (243)
Q Consensus       146 R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD  193 (243)
                      |-|+|  |+|.+|...    .=+++-+.|.|.+-+++.|++. ++..+|+|.
T Consensus         4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~   52 (52)
T 1k8b_A            4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR   52 (52)
T ss_dssp             EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred             EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence            44556  999998754    2358889999999999999995 889999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1d1ra_	83	d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}	4e-14
d2if1a_	126	d.64.1.1 (A:) Eukaryotic translation initiation fa	6e-11

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Length = 83

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

 Score = 63.5 bits (155), Expect = 4e-14
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 123 GKGIVKARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASKFFGTRFACGSS 181
           G G+V+            + R   G+K K V ++TG+   D +L   +     +  CG +
Sbjct: 2   GDGVVR------------IQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGA 49

Query: 182 VTGDDEIVIQGDVKDDLFDVIPEK 205
           V  D  I IQGD +D L  ++  K
Sbjct: 50  VK-DGVIEIQGDKRDLLKSLLEAK 72

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 6e-11
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDV 201
           R  +K++T V G++  D D K   K F  +FAC  +V       + I +QGD + ++   
Sbjct: 51  RNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQF 109

Query: 202 IPEKWPEIDEDFIE 215
           + E      +D ++
Sbjct: 110 LVEIG-LAKDDQLK 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2if1a_	126	Eukaryotic translation initiation factor eIF-1 (SU	99.84
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	99.83
d1neea1	98	Translation initiation factor 2 beta, aIF2beta, N-	91.68

>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.1e-22  Score=160.65  Aligned_cols=84  Identities=25%  Similarity=0.391  Sum_probs=75.3

Q ss_pred             CCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeec----CCEEEEcCCchhHHHHhhchhCCC
Q psy14509        133 EEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPE  208 (243)
Q Consensus       133 ~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~IQGD~~~~V~e~L~ek~~g  208 (243)
                      .++..+|+|++++|+|||.||+|+||+ +++||++|||.|+++|||||||..    .++|+|||||+++|.+||.+++ .
T Consensus        38 ~~~~~~I~I~~ekR~G~K~VT~I~Gl~-~~~dlk~laK~lKk~~acggSVk~~~~~~~~I~IQGD~r~~v~~~L~~~g-~  115 (126)
T d2if1a_          38 AGTEDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG-L  115 (126)
T ss_dssp             CSCTTCEECCCCCSSSSCCBCEEBSCC-TTSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHHT-S
T ss_pred             CCCcceEEEEEEecCCCCCeEEEECCC-CcccHHHHHHHHHHhcCCCceEEeCCCCCcEEEEcccHHHHHHHHHHHcC-C
Confidence            346788999999999999999999998 799999999999999999999963    2589999999999999999985 5


Q ss_pred             CCcCceeecC
Q psy14509        209 IDEDFIEDLG  218 (243)
Q Consensus       209 Ip~~~I~~~~  218 (243)
                      +++++|++.+
T Consensus       116 ~~k~~I~vHg  125 (126)
T d2if1a_         116 AKDDQLKVHG  125 (126)
T ss_dssp             SCTTTEECCC
T ss_pred             CccccEEecC
Confidence            6888998754

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.2e-21  Score=145.15  Aligned_cols=77  Identities=27%  Similarity=0.409  Sum_probs=69.4

Q ss_pred             CCcEEEEEeeeCC-CceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCce
Q psy14509        136 PKQVCVSRAPRGK-KKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI  214 (243)
Q Consensus       136 ~~~I~I~~e~R~k-rK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I  214 (243)
                      ...|+|++++|++ +|.||+|+||+.|++|+++||+.|+++||||||| ++++|+|||||+++|.+||.++  |++...+
T Consensus         3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsv-k~~~I~lQGd~~~~v~~~L~~~--G~~~K~~   79 (83)
T d1d1ra_           3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-KDGVIEIQGDKRDLLKSLLEAK--GMKVKLA   79 (83)
T ss_dssp             CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-CSSCEEECSCCHHHHHHHHHHH--TCEECCC
T ss_pred             CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEE-ECCEEEEeCcHHHHHHHHHHHc--CCceeee
Confidence            5789999887754 4999999999999999999999999999999999 8899999999999999999998  7776554


Q ss_pred             e
Q psy14509        215 E  215 (243)
Q Consensus       215 ~  215 (243)
                      -
T Consensus        80 G   80 (83)
T d1d1ra_          80 G   80 (83)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.68  E-value=0.019  Score=42.47  Aligned_cols=53  Identities=15%  Similarity=0.250  Sum_probs=44.1

Q ss_pred             EEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509        153 TVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW  206 (243)
Q Consensus       153 TvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~  206 (243)
                      |++.+|...    .-+++-+.|.|.+-+|+.|++ .++.++|+|.+.....+-+..+|
T Consensus        39 Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i-~~~~lii~G~~~~~~i~~~l~~y   95 (98)
T d1neea1          39 TFIQNFREVADALNRDPQHLLKFLLRELGTAGNL-EGGRAILQGKFTHFLINERIEDY   95 (98)
T ss_dssp             EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCC-BTTTEEEESSCSSSHHHHHHHHH
T ss_pred             EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEE-eCCEEEEEeeeCHHHHHHHHHHH
Confidence            888998764    357999999999999999999 67889999999887766665554