Psyllid ID: psy14513

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MTSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHcccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccEEEEEEEcccccccccEEEEcHHHHcccccccEEEEcccccccEccHHHHcccccccEEEEcccccccccHHHcccccccEEEccccccccccHHHHHHHHHHHHccccccccccccccccHHHcccccccccHHHccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mtskqnsgsrqdisydtqYTIMKVqlpystansELYAIRKNTFKNLLNLQTLycnfnpkltfihpysfnndwslkefyinnnaitslphelgdwdslevldiqsnpwtcdcsIQWLIDYVAKRqrtdpelnynlhcsqpvkfsnvhllsnpllshisgecvKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYkyarnhvpy
Flexible Loop (DISEMBL)
mtskqnsgsrqdisydtqYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY
Low Complexity Region (SEG)
MTSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKlypllfimtlllitlvvylICMSYKYARNHVPY
Disordered region (IsUnstruct)
*************SYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYAR*****
Disordered Region (DISOPRED)
************ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNH***
Disordered Region (DISEMBL)
************ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY
Disordered Region (DISPRO)
*****NSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
A1KZ92	1463	Peroxidasin-like protein	yes	N/A	0.397	0.056	0.352	3e-10
Q9WVB4	1523	Slit homolog 3 protein OS	yes	N/A	0.555	0.076	0.319	3e-09
A4IGL7	1457	Peroxidasin OS=Xenopus tr	no	N/A	0.401	0.057	0.372	4e-08
Q3UQ28	1475	Peroxidasin homolog OS=Mu	no	N/A	0.406	0.057	0.356	5e-08
O94813	1529	Slit homolog 2 protein OS	no	N/A	0.555	0.075	0.303	7e-08
Q9R1B9	1521	Slit homolog 2 protein OS	no	N/A	0.555	0.076	0.303	8e-08
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.406	0.057	0.356	8e-08
O75325	713	Leucine-rich repeat neuro	no	N/A	0.392	0.115	0.349	1e-07
Q9H3W5	708	Leucine-rich repeat neuro	no	N/A	0.507	0.149	0.309	2e-07
Q6UXK5	716	Leucine-rich repeat neuro	no	N/A	0.598	0.174	0.269	2e-07

>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-EL 91
           +E++A+ K TFK L++L+ LY +FN +L  + P +F +   L+  +++NN ++ +P    
Sbjct: 108 NEIHALDKQTFKGLISLEHLYIHFN-QLEMLQPETFGDLLRLERLFLHNNKLSKIPAGSF 166

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWL 116
            + DSL+ L + SN   CDC + WL
Sbjct: 167 SNLDSLKRLRLDSNALVCDCDLMWL 191

Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
           +N+ +  +  +TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct: 783 SNNSISMLTNHTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query: 90  ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              D  SL  L + +NP  CDCS++WL ++V K    +P +     CS P   ++  LL+
Sbjct: 842 SFNDLTSLSHLALGTNPLHCDCSLRWLSEWV-KAGYKEPGI---ARCSSPESMADRLLLT 897

Query: 150 NP 151
            P
Sbjct: 898 TP 899

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|A4IGL7|PXDN_XENTR Peroxidasin OS=Xenopus tropicalis GN=pxdn PE=2 SV=1

 Score = 58.2 bits (139), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELG 92
           E+ +I +  FK L +L+ LY +FN ++  + P SFN    L+  +++NN IT L P    
Sbjct: 111 EIQSIDRQAFKGLASLEQLYLHFN-QIETLEPESFNYLPKLERLFLHNNRITHLVPGTFS 169

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLID 118
             +S++ L + SN   CDC I WL D
Sbjct: 170 QLESMKRLRLDSNALHCDCEILWLAD 195

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score = 57.8 bits (138), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHEL 91
           +E+ +I +  FK L +L+ LY +FN ++  + P SF +   L+  +++NN IT L P   
Sbjct: 117 NEIQSIDRQAFKGLASLEQLYLHFN-QIETLDPESFQHLPKLERLFLHNNRITHLVPGTF 175

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLID 118
              +S++ L + SN   CDC I WL D
Sbjct: 176 SQLESMKRLRLDSNALHCDCEILWLAD 202

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
           +N+ +  +   +F N+  L TL  ++N +L  I P +F+   SL+   ++ N I+ +P  
Sbjct: 785 SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 843

Query: 90  ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              D  +L  L I +NP  CDC++QWL D+V K +  +P +     C+ P + ++  LL+
Sbjct: 844 AFNDLSALSHLAIGANPLYCDCNMQWLSDWV-KSEYKEPGI---ARCAGPGEMADKLLLT 899

Query: 150 NP 151
            P
Sbjct: 900 TP 901

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Homo sapiens (taxid: 9606)

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
           +N+ +  +   +F N+  L TL  ++N +L  I P +F+   SL+   ++ N I+ +P  
Sbjct: 777 SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 835

Query: 90  ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              D  +L  L I +NP  CDC++QWL D+V K +  +P +     C+ P + ++  LL+
Sbjct: 836 AFNDLSALSHLAIGANPLYCDCNMQWLSDWV-KSEYKEPGI---ARCAGPGEMADKLLLT 891

Query: 150 NP 151
            P
Sbjct: 892 TP 893

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Mus musculus (taxid: 10090)

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score = 57.0 bits (136), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHEL 91
           +E+ +I +  FK L +L+ LY +FN ++  + P SF +   L+  +++NN IT L P   
Sbjct: 120 NEIQSIDRQAFKGLASLEQLYLHFN-QIETLDPDSFQHLPKLERLFLHNNRITHLVPGTF 178

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLID 118
              +S++ L + SN   CDC I WL D
Sbjct: 179 NHLESMKRLRLDSNTLHCDCEILWLAD 205

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O75325|LRRN2_HUMAN Leucine-rich repeat neuronal protein 2 OS=Homo sapiens GN=LRRN2 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
           EL +I K    NL  L  L    NP+L+FIHP +F++   ++   +NNNA+++L  + + 
Sbjct: 297 ELVSIDKFALVNLPELTKLDITNNPRLSFIHPRAFHHLPQMETLMLNNNALSALHQQTVE 356

Query: 93  DWDSLEVLDIQSNPWTCDCSIQW 115
              +L+ + +  NP  CDC I+W
Sbjct: 357 SLPNLQEVGLHGNPIRCDCVIRW 379

Homo sapiens (taxid: 9606)

>sp|Q9H3W5|LRRN3_HUMAN Leucine-rich repeat neuronal protein 3 OS=Homo sapiens GN=LRRN3 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
           EL +I      NL +L+ +    NP+L++IHP +F     L+   +N+NA+++L H  + 
Sbjct: 296 ELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSNALSALYHGTIE 355

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKF 142
              +L+ + I SNP  CDC I+W+       +  +P+   +L C  P +F
Sbjct: 356 SLPNLKEISIHSNPIRCDCVIRWMNMNKTNIRFMEPD---SLFCVDPPEF 402

Homo sapiens (taxid: 9606)

>sp|Q6UXK5|LRRN1_HUMAN Leucine-rich repeat neuronal protein 1 OS=Homo sapiens GN=LRRN1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-L 91
            EL ++ +    NL  L  L    NPKL++IH  +F +  +L+   +NNNA+ ++  + +
Sbjct: 298 GELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAIYQKTV 357

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
               +L  + I SNP  CDC I W+       +  +P    ++ C+ P ++   H +   
Sbjct: 358 ESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEP---LSMFCAMPPEYKG-HQVKEV 413

Query: 152 LLSHISGECV 161
           L+   S +C+
Sbjct: 414 LIQDSSEQCL 423

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
346470385	459	hypothetical protein [Amblyomma maculatu	0.641	0.291	0.299	3e-14
427789513	459	Putative secreted protein [Rhipicephalus	0.794	0.361	0.269	1e-13
158300127	472	AGAP012425-PA [Anopheles gambiae str. PE	0.555	0.245	0.328	6e-13
157127989	494	leucine-rich transmembrane protein [Aede	0.545	0.230	0.309	9e-13
346467745	389	hypothetical protein [Amblyomma maculatu	0.583	0.313	0.296	2e-12
321466875	562	hypothetical protein DAPPUDRAFT_305325 [	0.502	0.186	0.366	2e-12
442752727	463	Putative secreted protein [Ixodes ricinu	0.894	0.403	0.26	5e-12
241747129	463	secreted protein, putative [Ixodes scapu	0.856	0.386	0.265	3e-11
157127987	512	leucine-rich transmembrane protein [Aede	0.550	0.224	0.291	6e-11
241603653	391	leucine-rich transmembrane protein, puta	0.425	0.227	0.340	2e-09

>gi|346470385|gb|AEO35037.1| hypothetical protein [Amblyomma maculatum]

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 13/147 (8%)

Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN--- 69
           + Y++   +  ++  Y     EL A+  + F +   ++ L+ + NPKL  I    F    
Sbjct: 240 LGYNSFMRLESIEELYLENMGELEAVEGDAFAHQKKMRALFLDSNPKLESIDLDIFGIFW 299

Query: 70  -----NDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
                 +W+L+E Y+ NN I  L  ++  W   E+LD+Q NPW CDC+  W+     ++ 
Sbjct: 300 RVETAANWTLRELYLQNNKIKYLDEDIAPWKQFEILDLQGNPWACDCNNAWI-----RKL 354

Query: 125 RTDPELNYNLHCSQPVKFSNVHLLSNP 151
              PEL  NL C  P KF +  +L  P
Sbjct: 355 PLQPELTANLRCDSPSKFEHKPMLELP 381

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789513|gb|JAA60208.1| Putative secreted protein [Rhipicephalus pulchellus]

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 23/189 (12%)

Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN--- 69
           + Y++ + +  ++  Y     +L A+  +TF     +++L+   NPKL  I    F    
Sbjct: 240 LGYNSFFKLHNIEELYVEKMKDLEAVEGDTFAYQKKMRSLFLGNNPKLKSIDLDIFGVFW 299

Query: 70  -----NDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
                 +W+L+EFY+ NN I  L  ++  W   E+LD+Q NPW CDC+  W+     +R 
Sbjct: 300 RVEPAANWTLREFYLQNNNIQYLDEDIAPWREFEILDLQGNPWVCDCNNAWI-----RRL 354

Query: 125 RTDPELNYNLHCSQPVKFSNVHLLSNP----------LLSHISGECVKGALVISQLSTQF 174
           +   EL   L C  P  + +  +L  P          +    S     G LV+  LS   
Sbjct: 355 QLQKELTVQLRCGSPTAYEHKPMLEVPNEVFACPSLRVEREQSSTFRTGVLVVGALSISA 414

Query: 175 YKLYPLLFI 183
             L  +L I
Sbjct: 415 ILLSAILLI 423

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158300127|ref|XP_320129.3| AGAP012425-PA [Anopheles gambiae str. PEST] gi|157013008|gb|EAA00711.3| AGAP012425-PA [Anopheles gambiae str. PEST]

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 12/128 (9%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN---------DWS-LKEFYINNN 82
           S+L  I +  F  L +LQ ++   NP LT++H ++F           DW  +K  Y++NN
Sbjct: 268 SQLKVIGRGAFSGLESLQEVHITNNPHLTYLHGHAFVRNDTDNPERLDWPPVKRLYLHNN 327

Query: 83  AITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQW-LIDYVAKRQRTDPELNYNLHCSQPV 140
            I+ L  +L   WD+++V+DI++NPWTCDC+ +W L+  +   +RT P +  N+ C  P 
Sbjct: 328 NISYLDAQLLVQWDTMDVIDIRANPWTCDCTNRWVLLSLLPIIERTTPAILNNIDCKSPS 387

Query: 141 KFSNVHLL 148
           + + + ++
Sbjct: 388 QMAGLSMV 395

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127989|ref|XP_001661262.1| leucine-rich transmembrane protein [Aedes aegypti] gi|108882322|gb|EAT46547.1| AAEL002307-PA [Aedes aegypti]

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 12/126 (9%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN---------DWS-LKEFYINNNAI 84
           L  I +  F  L  L+ ++  +NP LT +H  +F+          +W  +K+ YIN+N +
Sbjct: 306 LKVIGRGAFSKLEGLKEIHVCYNPGLTHLHEEAFSRVDAYNQNQTEWPPMKQLYINSNNL 365

Query: 85  TSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLID-YVAKRQRTDPELNYNLHCSQPVKF 142
           + L  +L   WD +EV+DI+ NPW+CDC  QW+++  +A  + T P +  N+ C+ P + 
Sbjct: 366 SKLDTQLLARWDDMEVIDIRYNPWSCDCDSQWMVETLLAIVEETSPRIKNNIVCAAPDQM 425

Query: 143 SNVHLL 148
             + ++
Sbjct: 426 KGLSMV 431

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346467745|gb|AEO33717.1| hypothetical protein [Amblyomma maculatum]

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN--- 69
           + Y++   +  ++  Y     EL A+  + F +   ++ L+ + NPKL  I    F    
Sbjct: 259 LGYNSFMRLESIEELYLENMGELEAVEGDAFAHQKKMRALFLDSNPKLESIDLDIFGIFW 318

Query: 70  -----NDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
                 +W+L+E Y+ NN I  L  ++  W   E+LD+Q NPW CDC+  W+     ++ 
Sbjct: 319 RVETAANWTLRELYLQNNKIKYLDEDIAPWKQFEILDLQGNPWACDCNNAWI-----RKL 373

Query: 125 RTDPELNYNLHCSQP 139
              PEL  NL C  P
Sbjct: 374 PLQPELTANLRCDSP 388

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466875|gb|EFX77868.1| hypothetical protein DAPPUDRAFT_305325 [Daphnia pulex]

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 7/112 (6%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN------DWSLKEFYINNNAITSLPHEL 91
           I  NTF  L ++  L+C+FNP L  IHP +F+N       + L EF+   N I ++P  L
Sbjct: 335 IDANTFTPLTSMIQLWCSFNPALKTIHPAAFSNMDESDGTFQLSEFHFRGNNIQNIPPSL 394

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLI-DYVAKRQRTDPELNYNLHCSQPVKF 142
             W +L ++DI  NP+ CDC+I W++   V       PEL  +L C+ P ++
Sbjct: 395 LPWANLGLVDIGENPFKCDCNIGWMVTSLVPIVSDKTPELITSLRCAGPEEY 446

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442752727|gb|JAA68523.1| Putative secreted protein [Ixodes ricinus]

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 87/200 (43%), Gaps = 13/200 (6%)

Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN--- 69
           ++Y + Y +  ++  Y     EL ++  +TF+    ++ LY + NPKLT +    F    
Sbjct: 244 LNYRSFYKMSNIEELYIENMKELVSVEGDTFECQKKMRVLYLDNNPKLTELDLDIFGIFC 303

Query: 70  -----NDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
                 +W+LKE Y+ NN I  +  ++  W  L +LD+Q NP  CDC+  WL     ++ 
Sbjct: 304 RIXXXANWTLKELYLQNNNIKWIDSDVAPWKELTILDLQGNPLACDCTNAWL-----RKI 358

Query: 125 RTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIM 184
              PEL   L C  P       LL  P    +     +     S L T  + +  L  + 
Sbjct: 359 PLQPELTVRLWCGSPANHEREPLLEAPEELFVCSNVSERDSQTSALRTAVFIVGTLSLVA 418

Query: 185 TLLLITLVVYLICMSYKYAR 204
            LL   ++V    +  ++ R
Sbjct: 419 ILLSAIMLVKRKALHERFLR 438

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241747129|ref|XP_002405614.1| secreted protein, putative [Ixodes scapularis] gi|215505884|gb|EEC15378.1| secreted protein, putative [Ixodes scapularis]

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 21/200 (10%)

Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN--- 69
           ++Y + Y +  ++  Y     EL ++  +TF+    ++ LY + NPKL  +    F    
Sbjct: 244 LNYRSFYKMSNIEELYIENMKELVSVEGDTFECQKKMRVLYLDNNPKLAELDLDIFGIFW 303

Query: 70  -----NDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
                 +W+LKE Y+ NN I  +  ++  W  L +LD+Q NP  CDC+  WL     ++ 
Sbjct: 304 RMEPPANWTLKELYLQNNNIKWIDSDVAPWKELTILDLQGNPLACDCTNAWL-----RKI 358

Query: 125 RTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALVISQLSTQFYKLYPLLFIM 184
              PEL   L C  P       LL  P    +          +S+  +Q   L   +FI+
Sbjct: 359 PLQPELTVRLWCGSPANHEREPLLEAPEELFVCSN-------VSERDSQTNALRTAVFIV 411

Query: 185 -TLLLITLVVYLICMSYKYA 203
            TL L+ +++  I +  + A
Sbjct: 412 GTLSLVAILLSAIMLVKRKA 431

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127987|ref|XP_001661261.1| leucine-rich transmembrane protein [Aedes aegypti] gi|108882321|gb|EAT46546.1| AAEL002295-PA [Aedes aegypti]

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 71/127 (55%), Gaps = 12/127 (9%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN---------DW-SLKEFYINNNAI 84
           L  I +  F  L  L+ ++   NP+LT +H  +F+          +W  +K+ Y++NN +
Sbjct: 311 LKVIGRGAFSKLEGLKEIHICNNPELTHLHGEAFSRANADDPGRMEWPRVKQLYLHNNNL 370

Query: 85  TSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLID-YVAKRQRTDPELNYNLHCSQPVKF 142
           + L  +L   WD +EV+D++ NPW CDC  QW+++  +A  ++T P++  N+ C+ P + 
Sbjct: 371 SMLDSQLLARWDDMEVIDVRVNPWLCDCDNQWMVETLLAIIEKTTPKIMNNIVCAAPDQM 430

Query: 143 SNVHLLS 149
             + ++ 
Sbjct: 431 KGLSMVD 437

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241603653|ref|XP_002405709.1| leucine-rich transmembrane protein, putative [Ixodes scapularis] gi|215502558|gb|EEC12052.1| leucine-rich transmembrane protein, putative [Ixodes scapularis]

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-----YSFNNDWSLKEFYINNNAITSLP 88
           +L ++ +  F NL  L+ LY N+NPKL  IH      +S +    L E Y+   A+ +L 
Sbjct: 276 QLTSVDEFAFGNLPGLKELYLNYNPKLISIHKDAFRSFSHSQFVQLDELYLRQTALQTLS 335

Query: 89  HELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
             + +W  L V D+  NPW CDC ++W+     K
Sbjct: 336 SRMQNWGQLAVADLAENPWNCDCRLKWMAHLTVK 369

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
UNIPROTKB|A1KZ92	1463	PXDNL "Peroxidasin-like protei	0.397	0.056	0.352	5e-10
MGI|MGI:1315202	1523	Slit3 "slit homolog 3 (Drosoph	0.555	0.076	0.319	5.2e-10
UNIPROTKB|F1RR92	1340	SLIT3 "Uncharacterized protein	0.555	0.086	0.327	9.4e-10
UNIPROTKB|O75094	1523	SLIT3 "Slit homolog 3 protein"	0.555	0.076	0.319	1.4e-09
RGD|69311	1523	Slit3 "slit homolog 3 (Drosoph	0.555	0.076	0.311	1.4e-09
UNIPROTKB|O88280	1523	Slit3 "Slit homolog 3 protein"	0.555	0.076	0.311	1.4e-09
UNIPROTKB|J3KNP3	1530	SLIT3 "Slit homolog 3 protein"	0.555	0.075	0.319	1.4e-09
UNIPROTKB|Q6UXK5	716	LRRN1 "Leucine-rich repeat neu	0.593	0.173	0.271	1.4e-09
UNIPROTKB|F1PKU2	1429	PXDNL "Uncharacterized protein	0.397	0.058	0.341	2.1e-09
UNIPROTKB|P22792	545	CPN2 "Carboxypeptidase N subun	0.449	0.172	0.346	3.3e-09

UNIPROTKB|A1KZ92 PXDNL "Peroxidasin-like protein" [Homo sapiens (taxid:9606)]

 Score = 158 (60.7 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 30/85 (35%), Positives = 53/85 (62%)

Query:    33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-EL 91
             +E++A+ K TFK L++L+ LY +FN +L  + P +F +   L+  +++NN ++ +P    
Sbjct:   108 NEIHALDKQTFKGLISLEHLYIHFN-QLEMLQPETFGDLLRLERLFLHNNKLSKIPAGSF 166

Query:    92 GDWDSLEVLDIQSNPWTCDCSIQWL 116
              + DSL+ L + SN   CDC + WL
Sbjct:   167 SNLDSLKRLRLDSNALVCDCDLMWL 191

GO:0004519 "endonuclease activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004601 "peroxidase activity" evidence=ISS

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISS

GO:0020037 "heme binding" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

MGI|MGI:1315202 Slit3 "slit homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 39/122 (31%), Positives = 67/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +  +TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct:   783 SNNSISMLTNHTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L + +NP  CDCS++WL ++V K    +P +     CS P   ++  LL+
Sbjct:   842 SFNDLTSLSHLALGTNPLHCDCSLRWLSEWV-KAGYKEPGI---ARCSSPESMADRLLLT 897

Query:   150 NP 151
              P
Sbjct:   898 TP 899

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|F1RR92 SLIT3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 40/122 (32%), Positives = 66/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +   TF N+ +L TL  ++N +L  I  +SFN   SL+   ++ N I+S+P  
Sbjct:   600 SNNSIGMLTNYTFSNMSHLSTLILSYN-RLRCIPIHSFNGLRSLRVLTLHGNDISSVPEG 658

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L + +NP  CDCS++WL ++V K    +P +     CS P   ++  LL+
Sbjct:   659 SFNDLTSLSHLALGTNPLHCDCSLRWLSEWV-KAGYKEPGI---ARCSSPEPMADRLLLT 714

Query:   150 NP 151
              P
Sbjct:   715 TP 716

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0050919 "negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0035385 "Roundabout signaling pathway" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O75094 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +   TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct:   783 SNNSISMLTNYTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L + +NP  CDCS++WL ++V K    +P +     CS P   ++  LL+
Sbjct:   842 SFNDLTSLSHLALGTNPLHCDCSLRWLSEWV-KAGYKEPGI---ARCSSPEPMADRLLLT 897

Query:   150 NP 151
              P
Sbjct:   898 TP 899

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0005615 "extracellular space" evidence=IDA

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0048495 "Roundabout binding" evidence=IPI

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

RGD|69311 Slit3 "slit homolog 3 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 38/122 (31%), Positives = 66/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +  +TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct:   783 SNNSISMLTNHTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L +  NP  CDCS++WL +++ K    +P +     CS P   ++  LL+
Sbjct:   842 SFNDLTSLSHLALGINPLHCDCSLRWLSEWI-KAGYKEPGI---ARCSSPESMADRLLLT 897

Query:   150 NP 151
              P
Sbjct:   898 TP 899

GO:0003674 "molecular_function" evidence=ND

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0009887 "organ morphogenesis" evidence=IEA;ISO

GO:0010629 "negative regulation of gene expression" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0021510 "spinal cord development" evidence=IEP

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0032870 "cellular response to hormone stimulus" evidence=IEA;ISO

GO:0035385 "Roundabout signaling pathway" evidence=IEA;ISO

GO:0048495 "Roundabout binding" evidence=IEA;ISO

GO:0048846 "axon extension involved in axon guidance" evidence=IEA;ISO

GO:0050919 "negative chemotaxis" evidence=IEA;ISO

GO:0051414 "response to cortisol stimulus" evidence=IEA;ISO

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA;ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=ISO

UNIPROTKB|O88280 Slit3 "Slit homolog 3 protein" [Rattus norvegicus (taxid:10116)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 38/122 (31%), Positives = 66/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +  +TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct:   783 SNNSISMLTNHTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L +  NP  CDCS++WL +++ K    +P +     CS P   ++  LL+
Sbjct:   842 SFNDLTSLSHLALGINPLHCDCSLRWLSEWI-KAGYKEPGI---ARCSSPESMADRLLLT 897

Query:   150 NP 151
              P
Sbjct:   898 TP 899

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J3KNP3 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 39/122 (31%), Positives = 66/122 (54%)

Query:    31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
             +N+ +  +   TF N+ +L TL  ++N +L  I  ++FN   SL+   ++ N I+S+P  
Sbjct:   783 SNNSISMLTNYTFSNMSHLSTLILSYN-RLRCIPVHAFNGLRSLRVLTLHGNDISSVPEG 841

Query:    90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
                D  SL  L + +NP  CDCS++WL ++V K    +P +     CS P   ++  LL+
Sbjct:   842 SFNDLTSLSHLALGTNPLHCDCSLRWLSEWV-KAGYKEPGI---ARCSSPEPMADRLLLT 897

Query:   150 NP 151
              P
Sbjct:   898 TP 899

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

UNIPROTKB|Q6UXK5 LRRN1 "Leucine-rich repeat neuronal protein 1" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 35/129 (27%), Positives = 64/129 (49%)

Query:    34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
             EL ++ +    NL  L  L    NPKL++IH  +F +  +L+   +NNNA+ ++  + + 
Sbjct:   299 ELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAIYQKTVE 358

Query:    93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152
                +L  + I SNP  CDC I W+       +  +P    ++ C+ P ++   H +   L
Sbjct:   359 SLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEP---LSMFCAMPPEYKG-HQVKEVL 414

Query:   153 LSHISGECV 161
             +   S +C+
Sbjct:   415 IQDSSEQCL 423

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PKU2 PXDNL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 29/85 (34%), Positives = 51/85 (60%)

Query:    33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-EL 91
             +E+ A+ K TFK L++L+ LY +FN ++  + P +F +   L+  +++NN ++ +P    
Sbjct:    69 NEIRALDKQTFKGLISLEQLYIHFN-QIEMLQPETFGDLLKLERLFLHNNKLSKIPAGSF 127

Query:    92 GDWDSLEVLDIQSNPWTCDCSIQWL 116
                DSL+ L + SN   CDC + WL
Sbjct:   128 SHLDSLKRLRLDSNALVCDCDLMWL 152

GO:0020037 "heme binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

UNIPROTKB|P22792 CPN2 "Carboxypeptidase N subunit 2" [Homo sapiens (taxid:9606)]

 Score = 145 (56.1 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 34/98 (34%), Positives = 54/98 (55%)

Query:    43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD-SLEVLD 101
             F++L  L  LY   N  LT +HP  F N   L+   ++ N +T+LP  + D + +L  L 
Sbjct:   333 FRDLEELVKLYLGSN-NLTALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLA 391

Query:   102 IQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQP 139
             +  NPW CDC + +L +++  +Q TD  LN   +C+ P
Sbjct:   392 LHGNPWQCDCHLAYLFNWL--QQYTDRLLNIQTYCAGP 427

GO:0050821 "protein stabilization" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
smart00082	51	smart00082, LRRCT, Leucine rich repeat C-terminal	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	0.004

>gnl|CDD|214507 smart00082, LRRCT, Leucine rich repeat C-terminal domain

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 105 NPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLS 154
           NP+ CDC ++WL+ ++   +        +L C+ P       L       
Sbjct: 1   NPFICDCELRWLLRWLQANEHLQD--PVDLRCASPSSLRGPLLELLHSEF 48

Length = 51

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84
          N+ L  I    FK L NL+ L  + N  LT I P +F+   SL+   ++ N +
Sbjct: 9  NNRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSNP 106
           NL++L  + N +LT I   +F    +LK   ++ N +TS+ P       SL  LD+  N 
Sbjct: 1   NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 37.4 bits (86), Expect = 0.004
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 79  INNNAITSLPHELGDWD---SLEVLDIQSNPWTCDCSIQWLIDYVAKRQ--RTDPELNYN 133
           I+NN I+++  E G      +L  +D+  NP+ CDC +  L  +  ++      PE    
Sbjct: 2   ISNNKISTI--EEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAAL- 58

Query: 134 LHCSQPVKFSNVHLLSNPLLSHISGE 159
             C+ P   +   LL  PLL     E
Sbjct: 59  --CAGPGALAGQPLLGIPLLDSGCDE 82

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG4237|consensus	498		99.81
KOG4194|consensus	873		99.66
KOG4237|consensus	498		99.56
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.23
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.16
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.13
PLN03150	623	hypothetical protein; Provisional	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.74
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.71
KOG0444|consensus	1255		98.63
PLN03150	623	hypothetical protein; Provisional	98.58
KOG4194|consensus	873		98.55
KOG0472|consensus	565		98.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.3
KOG0617|consensus	264		98.28
KOG0444|consensus	1255		98.26
KOG0472|consensus	565		98.14
KOG0618|consensus	1081		98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.04
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.0
KOG0618|consensus	1081		97.99
KOG0532|consensus	722		97.94
KOG1644|consensus	233		97.92
KOG0617|consensus	264		97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.78
KOG1259|consensus	490		97.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.71
KOG1859|consensus	1096		97.65
KOG1259|consensus	490		97.51
KOG4579|consensus	177		97.43
KOG4579|consensus	177		97.05
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.03
KOG0532|consensus	722		96.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.77
KOG0531|consensus	414		96.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.67
KOG1644|consensus	233		96.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.46
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.32
KOG4658|consensus	889		96.3
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.12
smart00370	26	LRR Leucine-rich repeats, outliers.	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.94
KOG1859|consensus	1096		95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.86
KOG3207|consensus	505		95.75
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.59
KOG0531|consensus	414		95.56
KOG2739|consensus	260		95.55
KOG3207|consensus	505		95.46
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.44
KOG2123|consensus	388		94.34
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	94.32
smart00370	26	LRR Leucine-rich repeats, outliers.	93.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.89
KOG2982|consensus	418		93.65
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	92.66
KOG4658|consensus	889		91.25
KOG0473|consensus	326		90.47
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	90.42
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.38
KOG3665|consensus	699		89.09
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.75
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	88.24
KOG2982|consensus	418		87.91
KOG1909|consensus	382		86.57
PRK15386	426	type III secretion protein GogB; Provisional	86.53
KOG2123|consensus	388		86.15
KOG2739|consensus	260		85.99
KOG3665|consensus	699		85.22
PF05568	189	ASFV_J13L: African swine fever virus J13L protein;	82.6
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	80.04

>KOG4237|consensus

Probab=99.81  E-value=2.3e-20  Score=153.21  Aligned_cols=140  Identities=23%  Similarity=0.366  Sum_probs=121.4

Q ss_pred             CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC
Q psy14513         16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW   94 (209)
Q Consensus        16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l   94 (209)
                      ..|..|++|..+ .+++|.|+.|.+++|.++..+++|+|..| +|+.+...+|.++..|+.|+|.+|+++.+.+.. ..+
T Consensus       268 ~cf~~L~~L~~l-nlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~  345 (498)
T KOG4237|consen  268 KCFKKLPNLRKL-NLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL  345 (498)
T ss_pred             HHHhhcccceEe-ccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence            334444444332 33999999999999999999999999999 999999999999999999999999999987777 889


Q ss_pred             CCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCce
Q psy14513         95 DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL  165 (209)
Q Consensus        95 ~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~  165 (209)
                      .+|.++.+-.|||.|+|.+.|+.+|++++..     ..+..|..|.-+++.++.++..   .++.|..+.+
T Consensus       346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~-----~~~~~Cq~p~~~~~~~~~dv~~---~~~~c~~~ee  408 (498)
T KOG4237|consen  346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV-----VGNPRCQSPGFVRQIPISDVAF---GDFRCGGPEE  408 (498)
T ss_pred             ceeeeeehccCcccCccchHHHHHHHhhCCC-----CCCCCCCCCchhccccchhccc---cccccCCccc
Confidence            9999999999999999999999999965542     3568999999999999999997   8888875433

>KOG4194|consensus

Probab=99.66  E-value=2e-17  Score=141.85  Aligned_cols=127  Identities=22%  Similarity=0.450  Sum_probs=99.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCc---cccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP---YSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNP  106 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~---~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np  106 (209)
                      +.|.|+.+..++|.++.+|++|||++| .++....   .+|.++++|+.|++.+|++++++... ..++.|++|+|.+|+
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence            677777777777777777777777777 6666433   35777888888888888888888776 888999999999995


Q ss_pred             -----------------------CccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513        107 -----------------------WTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG  163 (209)
Q Consensus       107 -----------------------~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~  163 (209)
                                             |.|||++.|+.+|+..+..+   ......|+.|+.+.|+.+..++.   .++.|.+.
T Consensus       428 iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq---~sv~a~CayPe~Lad~~i~svd~---~~lvC~Ds  501 (873)
T KOG4194|consen  428 IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ---SSVIAKCAYPEPLADQSIVSVDT---ANLVCDDS  501 (873)
T ss_pred             ceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc---cceeeeccCCcccccceeEeech---hhceecCC
Confidence                                   47999999999999433322   33557999999999999999998   89999754


Q ss_pred             c
Q psy14513        164 A  164 (209)
Q Consensus       164 ~  164 (209)
                      .
T Consensus       502 p  502 (873)
T KOG4194|consen  502 P  502 (873)
T ss_pred             C
Confidence            3

>KOG4237|consensus

Probab=99.56  E-value=3e-16  Score=129.19  Aligned_cols=186  Identities=18%  Similarity=0.145  Sum_probs=134.7

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC-Cc
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN-NA   83 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~   83 (209)
                      ....-|.++|.++..    +.+    ..|.|+.||+++|..+++|++|||++| .|+.|.|++|+++.++..|.+-+ |+
T Consensus        57 GL~eVP~~LP~~tve----irL----dqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   57 GLTEVPANLPPETVE----IRL----DQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             CcccCcccCCCcceE----EEe----ccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence            446789999999977    887    899999999999999999999999999 99999999999999976665555 99


Q ss_pred             CcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHH-HhcCCCCCCCCCccccC-CCCCC-CCcccccCCCCCcccCc
Q psy14513         84 ITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYV-AKRQRTDPELNYNLHCS-QPVKF-SNVHLLSNPLLSHISGE  159 (209)
Q Consensus        84 l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~-~~~~~~~~~~~~~~~C~-~p~~l-~g~~l~~~~~~~~~~~~  159 (209)
                      |+.+|.+. +.+.+++.|.  .|+++|+|-......-+ .......++......|. +-..+ .+++++--.    +.+.
T Consensus       128 I~~l~k~~F~gL~slqrLl--lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~----np~i  201 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLL--LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ----NPFI  201 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHh--cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc----Cccc
Confidence            99999988 8888877664  58899999877766544 22222223444455564 22222 233333322    3445


Q ss_pred             cCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513        160 CVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY  209 (209)
Q Consensus       160 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  209 (209)
                      |.-....    -+.+....++...++-++..+.+++.|.++..+|++..|
T Consensus       202 cdCnL~w----la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  202 CDCNLPW----LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS  247 (498)
T ss_pred             cccccch----hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence            5433221    222333446677778899999999999999999998765

>TIGR00864 PCC polycystin cation channel protein

Probab=99.23  E-value=1.2e-11  Score=121.36  Aligned_cols=86  Identities=22%  Similarity=0.460  Sum_probs=72.6

Q ss_pred             eccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcc
Q psy14513         78 YINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHI  156 (209)
Q Consensus        78 ~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~  156 (209)
                      ||++|+|+.++... ..+++|+.|+|++|||+|||++.||..|+++.... ......+.|..|..++|+++.++..   .
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~-v~~~~~i~CasP~~LrG~~L~~l~~---~   76 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVK-VRQPEAALCAGPGALAGQPLLGIPL---L   76 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcc-ccCCcccCCCCChHHCCCCcccCCc---c
Confidence            68899999999888 88999999999999999999999999999554433 3344678999999999999999987   6


Q ss_pred             cCccCCCceee
Q psy14513        157 SGECVKGALVI  167 (209)
Q Consensus       157 ~~~C~~~~~~~  167 (209)
                      ++.|..+....
T Consensus        77 d~~C~~~y~~C   87 (2740)
T TIGR00864        77 DSGCDEEYVAC   87 (2740)
T ss_pred             cCCCCCcceee
Confidence            77888766543

Note: this model has been restricted to the amino half because for technical reasons.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.17  E-value=1.6e-10  Score=108.83  Aligned_cols=82  Identities=21%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.+....+..|.++++|+.|++++| .++...|..|.++++|+.|+|++|++++ +|..+..+++|+++++++|++.+
T Consensus       507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        507 SENKLSGEIPDELSSCKKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             cCCcceeeCChHHcCccCCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            778887777777888888888888888 8887777778778888888888888875 56555777888888888888887


Q ss_pred             ccCc
Q psy14513        110 DCSI  113 (209)
Q Consensus       110 ~C~~  113 (209)
                      ..+.
T Consensus       586 ~~p~  589 (968)
T PLN00113        586 SLPS  589 (968)
T ss_pred             eCCC
Confidence            6664

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.16  E-value=2.4e-11  Score=76.22  Aligned_cols=53  Identities=38%  Similarity=0.473  Sum_probs=38.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      ++|.|+.+++++|.++++|++|++++| .++.+++++|.++++|+++++++|++
T Consensus         9 ~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    9 SNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            667777777777777777777777777 77777777777777777777777654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.13  E-value=5.4e-11  Score=74.57  Aligned_cols=60  Identities=37%  Similarity=0.463  Sum_probs=57.0

Q ss_pred             cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      ++|++|++++| .++.+++++|.++++|++|++++|+++.+++.. ..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57899999999 999999999999999999999999999999877 9999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=7.6e-10  Score=99.57  Aligned_cols=87  Identities=24%  Similarity=0.302  Sum_probs=76.5

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~   99 (209)
                      +..|.+    ++|.+....+..+..+++|+.|+|++| .+.+..|..+..+++|+.|+|++|+++. +|..+..+++|+.
T Consensus       420 v~~L~L----~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGL----DNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEC----CCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            344555    899999888889999999999999999 9998777778889999999999999997 6666699999999


Q ss_pred             EEeeCCCCccccC
Q psy14513        100 LDIQSNPWTCDCS  112 (209)
Q Consensus       100 l~l~~Np~~C~C~  112 (209)
                      |++++|.+.+.-+
T Consensus       495 L~Ls~N~l~g~iP  507 (623)
T PLN03150        495 LNLNGNSLSGRVP  507 (623)
T ss_pred             EECcCCcccccCC
Confidence            9999999998655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=2.9e-09  Score=80.66  Aligned_cols=87  Identities=24%  Similarity=0.285  Sum_probs=43.1

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCC
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDS   96 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~   96 (209)
                      ..+..|++    ++|.|+.++  .+..++.|+.|++++| +|+.+.+.....+++|+.|++++|++..+..-.  ..+++
T Consensus        42 ~~L~~L~L----s~N~I~~l~--~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   42 DKLEVLDL----SNNQITKLE--GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             TT--EEE-----TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred             cCCCEEEC----CCCCCcccc--CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence            44566666    999999997  4678999999999999 999997654345789999999999999875533  78999


Q ss_pred             ccEEEeeCCCCccccC
Q psy14513         97 LEVLDIQSNPWTCDCS  112 (209)
Q Consensus        97 L~~l~l~~Np~~C~C~  112 (209)
                      |+.|++.+||+.-...
T Consensus       115 L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen  115 LRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             --EEE-TT-GGGGSTT
T ss_pred             cceeeccCCcccchhh
Confidence            9999999999954433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.74  E-value=2e-08  Score=94.72  Aligned_cols=86  Identities=17%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~   98 (209)
                      ++..|++    ++|.++...+..|.++++|+.|++++| .+....|..|..+.+|+.|++++|.++. +|..+..+++|+
T Consensus       476 ~L~~L~l----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  550 (968)
T PLN00113        476 RLENLDL----SRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS  550 (968)
T ss_pred             cceEEEC----cCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence            3445555    899999888889999999999999999 9998888888889999999999999998 454458899999


Q ss_pred             EEEeeCCCCccc
Q psy14513         99 VLDIQSNPWTCD  110 (209)
Q Consensus        99 ~l~l~~Np~~C~  110 (209)
                      .|++++|.+...
T Consensus       551 ~L~Ls~N~l~~~  562 (968)
T PLN00113        551 QLDLSQNQLSGE  562 (968)
T ss_pred             EEECCCCccccc
Confidence            999999998754

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.71  E-value=7.8e-09  Score=62.21  Aligned_cols=51  Identities=25%  Similarity=0.615  Sum_probs=39.3

Q ss_pred             CCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccC
Q psy14513        105 NPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECV  161 (209)
Q Consensus       105 Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~  161 (209)
                      |||.|||++.|+..|+.+  .........+.|.+|+.++ .++..+..   .++.|.
T Consensus         1 NP~~CdC~l~~~~~w~~~--~~~~~~~~~~~C~~P~~~~-~~l~~~~~---~~~~C~   51 (51)
T smart00082        1 NPFICDCELRWLLRWLQA--NEHLQDPVSLRCASPSSLR-GPLLELLH---SEFKCP   51 (51)
T ss_pred             CCccCcCCchHHHHHHHh--CCccCCCCCCEeCCcHHHH-hHHHcCCH---hhCCCc
Confidence            899999999999999955  2223445689999999998 56777765   566663

>KOG0444|consensus

Probab=98.63  E-value=4.1e-09  Score=92.36  Aligned_cols=96  Identities=24%  Similarity=0.299  Sum_probs=81.5

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +++.-|++|+.-..+  +.|++    |+|++..+|.+ +....++-.|+||+| .|++|+...|.++.-|-+||||+|++
T Consensus        91 KnsGiP~diF~l~dL--t~lDL----ShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDL--TILDL----SHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             ccCCCCchhcccccc--eeeec----chhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh
Confidence            456667776655443  33555    99999999864 466788999999999 99999999999999999999999999


Q ss_pred             cccCCCCCCCCCccEEEeeCCCCc
Q psy14513         85 TSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        85 ~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ..+|+++..+..|++|.|++||+.
T Consensus       163 e~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  163 EMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hhcCHHHHHHhhhhhhhcCCChhh
Confidence            999999999999999999999984

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=7.7e-08  Score=86.72  Aligned_cols=87  Identities=17%  Similarity=0.281  Sum_probs=74.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCC-CCCCCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHEL-GDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~-~~l~~L   97 (209)
                      +|..|.+    ++|.+.+..+..|..+++|+.|+|++| .++...|..+..+++|+.|+|++|+++. +|..+ .....+
T Consensus       443 ~L~~L~L----s~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~  517 (623)
T PLN03150        443 HLQSINL----SGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR  517 (623)
T ss_pred             CCCEEEC----CCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence            3455555    899999888888999999999999999 9998888888999999999999999996 77766 444567


Q ss_pred             cEEEeeCCCCcccc
Q psy14513         98 EVLDIQSNPWTCDC  111 (209)
Q Consensus        98 ~~l~l~~Np~~C~C  111 (209)
                      ..+++.+|+..|.+
T Consensus       518 ~~l~~~~N~~lc~~  531 (623)
T PLN03150        518 ASFNFTDNAGLCGI  531 (623)
T ss_pred             ceEEecCCccccCC
Confidence            78999999998853

>KOG4194|consensus

Probab=98.55  E-value=3.6e-08  Score=85.77  Aligned_cols=51  Identities=25%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN   82 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N   82 (209)
                      ++|.|+.+..+.|.++.+|..|.|+.| +++.+++..|+.++.|+.|+|..|
T Consensus       181 a~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  181 ASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             ccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc
Confidence            444444444444444444444444444 444444444433333333333333

>KOG0472|consensus

Probab=98.41  E-value=6.7e-08  Score=80.80  Aligned_cols=88  Identities=26%  Similarity=0.330  Sum_probs=73.3

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc--
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT--  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~--  108 (209)
                      +.|+|..++.+...+|+++..|||.+| +++..+.+.-. +.+|.+||+|+|.++++|...+++ .|+.+.+.|||+.  
T Consensus       236 g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~cl-LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi  312 (565)
T KOG0472|consen  236 GENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICL-LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI  312 (565)
T ss_pred             cccHHHhhHHHHhcccccceeeecccc-ccccCchHHHH-hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence            678888888888888999999999999 99888777654 777999999999999999888888 8999999999984  


Q ss_pred             ----cccCcHhHHHHHH
Q psy14513        109 ----CDCSIQWLIDYVA  121 (209)
Q Consensus       109 ----C~C~~~~~~~~~~  121 (209)
                          -.|....+..+++
T Consensus       313 Rr~ii~~gT~~vLKyLr  329 (565)
T KOG0472|consen  313 RREIISKGTQEVLKYLR  329 (565)
T ss_pred             HHHHHcccHHHHHHHHH
Confidence                3466666666663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.30  E-value=1.6e-07  Score=71.19  Aligned_cols=81  Identities=21%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~   99 (209)
                      +..|++    ++|.|+.|..-. ..+.+|+.|++++| .|+.++.  +..++.|+.|++++|+++++...+ ..+++|+.
T Consensus        21 ~~~L~L----~~n~I~~Ie~L~-~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   21 LRELNL----RGNQISTIENLG-ATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -------------------S---TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccc----cccccccccchh-hhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            455677    999999997422 25789999999999 9999874  566899999999999999987555 56899999


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      |++++|.+.-
T Consensus        93 L~L~~N~I~~  102 (175)
T PF14580_consen   93 LYLSNNKISD  102 (175)
T ss_dssp             EE-TTS---S
T ss_pred             EECcCCcCCC
Confidence            9999998864

>KOG0617|consensus

Probab=98.28  E-value=1.5e-07  Score=70.51  Aligned_cols=82  Identities=23%  Similarity=0.323  Sum_probs=71.3

Q ss_pred             ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEE
Q psy14513         22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD  101 (209)
Q Consensus        22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~  101 (209)
                      +.|.+    |+|.++.++++. ..|.+|+.|++.+| +|+.++...- .++.|++|++..|++..+|.++++++.|+.||
T Consensus        36 TrLtL----SHNKl~~vppni-a~l~nlevln~~nn-qie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   36 TRLTL----SHNKLTVVPPNI-AELKNLEVLNLSNN-QIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhc----ccCceeecCCcH-HHhhhhhhhhcccc-hhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            34555    899999999875 56899999999999 9999988754 48899999999999999999999999999999


Q ss_pred             eeCCCCccc
Q psy14513        102 IQSNPWTCD  110 (209)
Q Consensus       102 l~~Np~~C~  110 (209)
                      +..|.+.-.
T Consensus       109 ltynnl~e~  117 (264)
T KOG0617|consen  109 LTYNNLNEN  117 (264)
T ss_pred             ccccccccc
Confidence            998887654

>KOG0444|consensus

Probab=98.26  E-value=1.3e-07  Score=83.25  Aligned_cols=48  Identities=19%  Similarity=0.168  Sum_probs=25.6

Q ss_pred             CCcccccCCcccccceeccccccccccccccCchhhcCCcccceeccccc
Q psy14513          8 GSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFN   57 (209)
Q Consensus         8 ~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n   57 (209)
                      +++.+||+.-|.+|+.|..| ++|+|.+..+||.. +.|.+|++|+|++|
T Consensus       136 N~IetIPn~lfinLtDLLfL-DLS~NrLe~LPPQ~-RRL~~LqtL~Ls~N  183 (1255)
T KOG0444|consen  136 NNIETIPNSLFINLTDLLFL-DLSNNRLEMLPPQI-RRLSMLQTLKLSNN  183 (1255)
T ss_pred             CccccCCchHHHhhHhHhhh-ccccchhhhcCHHH-HHHhhhhhhhcCCC
Confidence            34455555555555544332 44556666655543 44555555555555

>KOG0472|consensus

Probab=98.14  E-value=7.1e-07  Score=74.80  Aligned_cols=82  Identities=27%  Similarity=0.509  Sum_probs=63.9

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccc-----------------------cCccccCCCCCcCEE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-----------------------IHPYSFNNDWSLKEF   77 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-----------------------i~~~~f~~l~~L~~L   77 (209)
                      ++.|++    ++|-+..+|-+. +.+..|+.++++.| ++..                       ++++...++..|..|
T Consensus       437 Lt~L~L----~NN~Ln~LP~e~-~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL  510 (565)
T KOG0472|consen  437 LTFLDL----SNNLLNDLPEEM-GSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL  510 (565)
T ss_pred             ceeeec----ccchhhhcchhh-hhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence            344666    777777777544 45666777777776 5544                       445545567779999


Q ss_pred             eccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         78 YINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        78 ~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ||.+|.+..+|+.++++++|++|++.||||.
T Consensus       511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccCCCchhhCChhhccccceeEEEecCCccC
Confidence            9999999999999999999999999999998

>KOG0618|consensus

Probab=98.06  E-value=2.1e-07  Score=84.55  Aligned_cols=82  Identities=24%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEE
Q psy14513         22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD  101 (209)
Q Consensus        22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~  101 (209)
                      .+|.+| .+++|+|..+|+..+.++..|++|+||+| +++.++.. ...+..|+.|...+|++..+| ++..++.|+.+|
T Consensus       383 ~hLKVL-hLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t-va~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVL-HLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDT-VANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeee-eecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHH-HHhhhhhHHHhhcCCceeech-hhhhcCcceEEe
Confidence            344443 22567777777666667777777777777 76666633 333566677777777777666 556677788888


Q ss_pred             eeCCCC
Q psy14513        102 IQSNPW  107 (209)
Q Consensus       102 l~~Np~  107 (209)
                      ++.|.+
T Consensus       459 lS~N~L  464 (1081)
T KOG0618|consen  459 LSCNNL  464 (1081)
T ss_pred             cccchh
Confidence            887755

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.04  E-value=3e-06  Score=49.25  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=20.4

Q ss_pred             ccceecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513         48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL   87 (209)
Q Consensus        48 ~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   87 (209)
                      +|++|++++| .|+.+++. +..++.|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence            4556666666 66655542 34456666666666665554

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.00  E-value=6.3e-06  Score=75.60  Aligned_cols=59  Identities=24%  Similarity=0.292  Sum_probs=41.5

Q ss_pred             cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      .+|+.|++++| .++.++..    ...|+.|++++|+++.+|..+..++.|+.+++++|||.+.
T Consensus       402 s~L~~LdLS~N-~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        402 SELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             cCCCEEEccCC-cCCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            34555566666 55555432    2346777778888887777667788999999999999863

>KOG0618|consensus

Probab=97.99  E-value=8.4e-07  Score=80.83  Aligned_cols=90  Identities=18%  Similarity=0.157  Sum_probs=61.5

Q ss_pred             ccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513         13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-   91 (209)
Q Consensus        13 ~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-   91 (209)
                      +|...+.++..|..| .+|+|.++.++ .....+..|++|...+| .+..++  .+..++.|+.+|++.|.|+.+.... 
T Consensus       398 fpas~~~kle~LeeL-~LSGNkL~~Lp-~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  398 FPASKLRKLEELEEL-NLSGNKLTTLP-DTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             CCHHHHhchHHhHHH-hcccchhhhhh-HHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhh
Confidence            444444444433332 33788888888 55567888888888888 888777  3445788888888888888743333 


Q ss_pred             CCCCCccEEEeeCCCC
Q psy14513         92 GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        92 ~~l~~L~~l~l~~Np~  107 (209)
                      ...++|++||++||+|
T Consensus       473 ~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  473 LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCCcccceeeccCCcc
Confidence            3447888888888886

>KOG0532|consensus

Probab=97.94  E-value=2e-06  Score=74.91  Aligned_cols=75  Identities=21%  Similarity=0.299  Sum_probs=50.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      +.|+|..+++.. ++|.+|+.|.+..| .+..++++.-  --+|..||++.|+++.+|..+..+..|+++.|.+||+.-
T Consensus       174 s~nei~slpsql-~~l~slr~l~vrRn-~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  174 SKNEIQSLPSQL-GYLTSLRDLNVRRN-HLEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhhhhchHHh-hhHHHHHHHHHhhh-hhhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            444444444322 33444444444444 4444444432  245899999999999999998999999999999999964

>KOG1644|consensus

Probab=97.92  E-value=1e-05  Score=62.07  Aligned_cols=76  Identities=28%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             ccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCCccEEEeeCCC
Q psy14513         29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDSLEVLDIQSNP  106 (209)
Q Consensus        29 ~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~l~l~~Np  106 (209)
                      ++++|.+..++  .|..++.|++|.+.+| +|..|.+..-.-++.|+.|.|.+|.+..+-.-.  ..+|+|++|.+-+||
T Consensus        48 DLtdNdl~~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   48 DLTDNDLRKLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cccccchhhcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence            45889988877  5778999999999999 999999987666788999999999999975433  788999999999999


Q ss_pred             C
Q psy14513        107 W  107 (209)
Q Consensus       107 ~  107 (209)
                      .
T Consensus       125 v  125 (233)
T KOG1644|consen  125 V  125 (233)
T ss_pred             h
Confidence            6

>KOG0617|consensus

Probab=97.87  E-value=7.7e-07  Score=66.80  Aligned_cols=98  Identities=20%  Similarity=0.313  Sum_probs=75.7

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccc-cCccccCCCCCcCEEeccCC
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-IHPYSFNNDWSLKEFYINNN   82 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-i~~~~f~~l~~L~~L~Ls~N   82 (209)
                      +|....|..|++-..+  .+|.+    +-|.+..+|. -|+.++.|+.|||++| .+.. .-|+-|..+..|+-|+|++|
T Consensus        66 nqie~lp~~issl~kl--r~lnv----gmnrl~~lpr-gfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dn  137 (264)
T KOG0617|consen   66 NQIEELPTSISSLPKL--RILNV----GMNRLNILPR-GFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN  137 (264)
T ss_pred             chhhhcChhhhhchhh--hheec----chhhhhcCcc-ccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC
Confidence            3445566666555443  44555    6788887775 5789999999999998 7654 44555666888999999999


Q ss_pred             cCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         83 AITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        83 ~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      .+..+|++++.+++|+.|.+.+|.+.-
T Consensus       138 dfe~lp~dvg~lt~lqil~lrdndll~  164 (264)
T KOG0617|consen  138 DFEILPPDVGKLTNLQILSLRDNDLLS  164 (264)
T ss_pred             CcccCChhhhhhcceeEEeeccCchhh
Confidence            999999999999999999999998754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=1.2e-05  Score=46.69  Aligned_cols=37  Identities=41%  Similarity=0.654  Sum_probs=32.2

Q ss_pred             CCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         72 WSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        72 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|++|++++|+++.+|+.+..+++|+.+++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            3689999999999999987799999999999999986

...

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.78  E-value=5.1e-05  Score=69.78  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             cceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         49 LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        49 L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      |+.|+|++| .+..++...   ...|+.|++++|+++.+|..+.  ++|+.|++++|.+.
T Consensus       243 L~~L~Ls~N-~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        243 IQEMELSIN-RITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             ccEEECcCC-ccCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccc
Confidence            444444444 444443322   1346777777777777665442  36777888887765

>KOG1259|consensus

Probab=97.78  E-value=3.5e-06  Score=68.43  Aligned_cols=53  Identities=13%  Similarity=0.122  Sum_probs=25.1

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL   87 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   87 (209)
                      |+|.|+.+.. +..-++.++.|++|+| .|..++.-+|  +++|+.||||+|.++.+
T Consensus       292 S~N~I~~iDE-SvKL~Pkir~L~lS~N-~i~~v~nLa~--L~~L~~LDLS~N~Ls~~  344 (490)
T KOG1259|consen  292 SGNLITQIDE-SVKLAPKLRRLILSQN-RIRTVQNLAE--LPQLQLLDLSGNLLAEC  344 (490)
T ss_pred             cccchhhhhh-hhhhccceeEEecccc-ceeeehhhhh--cccceEeecccchhHhh
Confidence            5555555442 2233455555555555 5555444322  44455555555544443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.78  E-value=4.2e-05  Score=70.33  Aligned_cols=87  Identities=31%  Similarity=0.335  Sum_probs=68.3

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +.+..|..++.    .+..|.+    ++|.|+.++...+   .+|++|++++| .++.++...   ...|+.|+|++|.+
T Consensus       189 ~LtsLP~~Ip~----~L~~L~L----s~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N~L  253 (754)
T PRK15370        189 GLTTIPACIPE----QITTLIL----DNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATL---PDTIQEMELSINRI  253 (754)
T ss_pred             CcCcCCccccc----CCcEEEe----cCCCCCcCChhhc---cCCCEEECCCC-ccccCChhh---hccccEEECcCCcc
Confidence            44556666654    3455777    8999999987665   48999999999 999887653   24699999999999


Q ss_pred             cccCCCCCCCCCccEEEeeCCCCc
Q psy14513         85 TSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        85 ~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ..+|..+.  .+|+.|++++|.+.
T Consensus       254 ~~LP~~l~--s~L~~L~Ls~N~L~  275 (754)
T PRK15370        254 TELPERLP--SALQSLDLFHNKIS  275 (754)
T ss_pred             CcCChhHh--CCCCEEECcCCccC
Confidence            99987663  47899999999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.71  E-value=6e-05  Score=69.30  Aligned_cols=49  Identities=16%  Similarity=0.102  Sum_probs=30.6

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP   65 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~   65 (209)
                      .+....|..++.    ++..|.+    ++|+|+.++.    .+++|++|++++| .++.++.
T Consensus       211 ~~LtsLP~~l~~----~L~~L~L----~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~  259 (788)
T PRK15387        211 SGLTTLPDCLPA----HITTLVI----PDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV  259 (788)
T ss_pred             CCCCcCCcchhc----CCCEEEc----cCCcCCCCCC----CCCCCcEEEecCC-ccCcccC
Confidence            344445555543    3455666    6777777764    2467777777777 7777653

>KOG1859|consensus

Probab=97.65  E-value=2.2e-06  Score=76.61  Aligned_cols=77  Identities=25%  Similarity=0.329  Sum_probs=52.2

Q ss_pred             cccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC---------------------
Q psy14513         30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP---------------------   88 (209)
Q Consensus        30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~---------------------   88 (209)
                      +++|+++.+.  .+..++.|++|||+.| .+..++.-.-.+.. |+.|.+++|-++++.                     
T Consensus       194 LshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  194 LSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             cchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc
Confidence            3899999888  6788999999999999 99888765433322 555555555555432                     


Q ss_pred             -CCC--CCCCCccEEEeeCCCCccc
Q psy14513         89 -HEL--GDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        89 -~~~--~~l~~L~~l~l~~Np~~C~  110 (209)
                       .-.  ..+..|..|.|.|||+-|.
T Consensus       270 seL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  270 SELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             hhhhHHHHHHHHHHHhhcCCccccC
Confidence             111  2233556678888888885

>KOG1259|consensus

Probab=97.51  E-value=2.8e-05  Score=63.34  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=37.1

Q ss_pred             CcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513         46 LLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        46 l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      +..|+++|||+| .|+.|+...-- .+.++.|++|.|.+..+.. ...+++|+.||+++|-+
T Consensus       283 Wq~LtelDLS~N-~I~~iDESvKL-~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L  341 (490)
T KOG1259|consen  283 WQELTELDLSGN-LITQIDESVKL-APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL  341 (490)
T ss_pred             Hhhhhhcccccc-chhhhhhhhhh-ccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence            445666677777 77666665432 5667777777777766543 45566666677776655

>KOG4579|consensus

Probab=97.43  E-value=6.1e-06  Score=59.75  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=45.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP  106 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np  106 (209)
                      ++|.+...++.--...+.++.++|++| .|+.++.+ +..++.|+.++++.|.+...|..+..+.++..|+..+|.
T Consensus        61 s~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   61 SDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             ccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence            666666666544344445666666666 66666666 555666666666666666666555335555555555553

>KOG4579|consensus

Probab=97.05  E-value=3.8e-05  Score=55.69  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=64.7

Q ss_pred             ccccccccCc--hhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++.+|-.+++  ........|+..+|++| .+..+++..-...+.+..+++++|.++.+|.++..++.|+.++++.||+.
T Consensus        35 ssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   35 SSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             ccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence            6676666653  33445667788899999 99988887555555789999999999999998889999999999999998


Q ss_pred             cccC
Q psy14513        109 CDCS  112 (209)
Q Consensus       109 C~C~  112 (209)
                      -...
T Consensus       114 ~~p~  117 (177)
T KOG4579|consen  114 AEPR  117 (177)
T ss_pred             cchH
Confidence            7654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.03  E-value=0.00018  Score=61.28  Aligned_cols=80  Identities=26%  Similarity=0.416  Sum_probs=56.7

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|.+..++ .....+++|+.|++++| .+..+++.... .+.|+.|++++|+++.+|........|+.
T Consensus       141 nL~~L~l----~~N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~-~~~L~~L~ls~N~i~~l~~~~~~~~~L~~  213 (394)
T COG4886         141 NLKELDL----SDNKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPKLLSN-LSNLNNLDLSGNKISDLPPEIELLSALEE  213 (394)
T ss_pred             hcccccc----cccchhhhh-hhhhccccccccccCCc-hhhhhhhhhhh-hhhhhheeccCCccccCchhhhhhhhhhh
Confidence            4555666    778888775 23456788888888888 88887776432 57788888888888888765444555777


Q ss_pred             EEeeCCC
Q psy14513        100 LDIQSNP  106 (209)
Q Consensus       100 l~l~~Np  106 (209)
                      +.+++|+
T Consensus       214 l~~~~N~  220 (394)
T COG4886         214 LDLSNNS  220 (394)
T ss_pred             hhhcCCc
Confidence            7777774

>KOG0532|consensus

Probab=96.81  E-value=0.00011  Score=64.32  Aligned_cols=108  Identities=19%  Similarity=0.127  Sum_probs=68.5

Q ss_pred             CCCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC
Q psy14513          2 TSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN   81 (209)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~   81 (209)
                      ++++++..|..++.-...   -|-+    ++|+++.++.+. +.+..|..||.+.| .+..++++.- ++.+|+.|.+.+
T Consensus       129 s~NqlS~lp~~lC~lpLk---vli~----sNNkl~~lp~~i-g~~~tl~~ld~s~n-ei~slpsql~-~l~slr~l~vrR  198 (722)
T KOG0532|consen  129 SSNQLSHLPDGLCDLPLK---VLIV----SNNKLTSLPEEI-GLLPTLAHLDVSKN-EIQSLPSQLG-YLTSLRDLNVRR  198 (722)
T ss_pred             ccchhhcCChhhhcCcce---eEEE----ecCccccCCccc-ccchhHHHhhhhhh-hhhhchHHhh-hHHHHHHHHHhh
Confidence            456666666666654422   2222    677777776544 36666777777777 7776666543 366677777777


Q ss_pred             CcCcccCCCCCCCCCccEEEeeCCCC----ccccCcHhHHHHH
Q psy14513         82 NAITSLPHELGDWDSLEVLDIQSNPW----TCDCSIQWLIDYV  120 (209)
Q Consensus        82 N~l~~l~~~~~~l~~L~~l~l~~Np~----~C~C~~~~~~~~~  120 (209)
                      |.+..+|++...| .|..||++.|..    .|-|++..++...
T Consensus       199 n~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  199 NHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             hhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee
Confidence            7777777666533 366788888876    4777777666543

>PLN03210 Resistant to P

Probab=96.77  E-value=0.0024  Score=61.86  Aligned_cols=33  Identities=15%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             CCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513         72 WSLKEFYINNNAITSLPHELGDWDSLEVLDIQS  104 (209)
Q Consensus        72 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~  104 (209)
                      .+|+.|+|++|.++.+|..+..+++|+.|++.+
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence            346777777777777776667777888888776

syringae 6; Provisional

>KOG0531|consensus

Probab=96.73  E-value=0.00076  Score=58.10  Aligned_cols=81  Identities=28%  Similarity=0.359  Sum_probs=52.3

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      +.++..|.+    .+|.|..+... +..+++|+.|++++| .|+.+.+-..  +..|+.|++++|.++.+. +...+..|
T Consensus        94 ~~~l~~l~l----~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~l~~--l~~L~~L~l~~N~i~~~~-~~~~l~~L  164 (414)
T KOG0531|consen   94 LKSLEALDL----YDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEGLST--LTLLKELNLSGNLISDIS-GLESLKSL  164 (414)
T ss_pred             ccceeeeec----cccchhhcccc-hhhhhcchheecccc-ccccccchhh--ccchhhheeccCcchhcc-CCccchhh
Confidence            344444555    77777777652 345777788888888 7777766442  445777777777777764 23346666


Q ss_pred             cEEEeeCCCC
Q psy14513         98 EVLDIQSNPW  107 (209)
Q Consensus        98 ~~l~l~~Np~  107 (209)
                      +.+++++|..
T Consensus       165 ~~l~l~~n~i  174 (414)
T KOG0531|consen  165 KLLDLSYNRI  174 (414)
T ss_pred             hcccCCcchh
Confidence            7777776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.67  E-value=0.00076  Score=55.37  Aligned_cols=14  Identities=29%  Similarity=0.292  Sum_probs=6.9

Q ss_pred             cccceeccccccccc
Q psy14513         47 LNLQTLYCNFNPKLT   61 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~   61 (209)
                      ++|+.|++++| .++
T Consensus       137 ~~L~~L~L~~n-~l~  150 (319)
T cd00116         137 PALEKLVLGRN-RLE  150 (319)
T ss_pred             CCceEEEcCCC-cCC
Confidence            44555555555 444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1644|consensus

Probab=96.60  E-value=0.0021  Score=49.62  Aligned_cols=76  Identities=20%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             ccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCCC----CCCCCccEEEee
Q psy14513         29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL----GDWDSLEVLDIQ  103 (209)
Q Consensus        29 ~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~----~~l~~L~~l~l~  103 (209)
                      ++++|+|+.|.+.--.-+++|+.|.|.+| .|..+.. +....++.|++|.+-+|..+.-..-.    ..+|+|+.+|..
T Consensus        70 ll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   70 LLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             EecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            34899999999987777899999999999 9888655 55566889999999999998754322    568899999887


Q ss_pred             CC
Q psy14513        104 SN  105 (209)
Q Consensus       104 ~N  105 (209)
                      +-
T Consensus       149 kV  150 (233)
T KOG1644|consen  149 KV  150 (233)
T ss_pred             hh
Confidence            63

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.54  E-value=0.00058  Score=56.10  Aligned_cols=78  Identities=21%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             ccccccccCchhhcCCcc---cceecccccccccccC----ccccCCC-CCcCEEeccCCcCcc-----cCCCCCCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLN---LQTLYCNFNPKLTFIH----PYSFNND-WSLKEFYINNNAITS-----LPHELGDWDSL   97 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~---L~~L~Ls~n~~l~~i~----~~~f~~l-~~L~~L~Ls~N~l~~-----l~~~~~~l~~L   97 (209)
                      ++|.+....+..|..+..   |++|++++| .++...    ...+... ++|+.+++++|.++.     +...+..++.|
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L  167 (319)
T cd00116          89 SDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL  167 (319)
T ss_pred             cCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence            566665544444444444   666677666 554211    1122223 556666666666662     11111344556


Q ss_pred             cEEEeeCCCCcc
Q psy14513         98 EVLDIQSNPWTC  109 (209)
Q Consensus        98 ~~l~l~~Np~~C  109 (209)
                      +++++++|.+..
T Consensus       168 ~~L~l~~n~l~~  179 (319)
T cd00116         168 KELNLANNGIGD  179 (319)
T ss_pred             CEEECcCCCCch
Confidence            666666665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.46  E-value=0.0014  Score=55.83  Aligned_cols=81  Identities=25%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             cceeccccccccccccccCchhhcCCc-ccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLL-NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~-~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      +..|.+    .+|.+..+++... .+. +|+.|++++| .+..++.. ...++.|+.|++++|+++.++.....++.|..
T Consensus       118 l~~L~l----~~n~i~~i~~~~~-~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         118 LTSLDL----DNNNITDIPPLIG-LLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             eeEEec----CCcccccCccccc-cchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            344555    7899999987543 343 8999999999 98888522 23478899999999999999876567888999


Q ss_pred             EEeeCCCCc
Q psy14513        100 LDIQSNPWT  108 (209)
Q Consensus       100 l~l~~Np~~  108 (209)
                      +++++|.+.
T Consensus       191 L~ls~N~i~  199 (394)
T COG4886         191 LDLSGNKIS  199 (394)
T ss_pred             eeccCCccc
Confidence            999999774

>PLN03210 Resistant to P

Probab=96.32  E-value=0.0092  Score=57.95  Aligned_cols=20  Identities=15%  Similarity=0.202  Sum_probs=8.7

Q ss_pred             CCCCcCEEeccCC-cCcccCC
Q psy14513         70 NDWSLKEFYINNN-AITSLPH   89 (209)
Q Consensus        70 ~l~~L~~L~Ls~N-~l~~l~~   89 (209)
                      .+.+|+.|++++| .++.+|.
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCC
Confidence            3444555555442 3333443

syringae 6; Provisional

>KOG4658|consensus

Probab=96.30  E-value=0.0012  Score=62.01  Aligned_cols=75  Identities=21%  Similarity=0.297  Sum_probs=59.9

Q ss_pred             cccc--ccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513         31 ANSE--LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP  106 (209)
Q Consensus        31 s~n~--l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np  106 (209)
                      ..|.  +..+..+.|..++.|..|||++|..+..+|.. -+++.+|++|++++..++.+|..++.+..|.+|++..+-
T Consensus       553 ~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  553 QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence            5564  78888888999999999999988556666554 445888999999999999999888777788888777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.12  E-value=0.003  Score=31.93  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=16.4

Q ss_pred             CcccceecccccccccccCccccC
Q psy14513         46 LLNLQTLYCNFNPKLTFIHPYSFN   69 (209)
Q Consensus        46 l~~L~~L~Ls~n~~l~~i~~~~f~   69 (209)
                      |++|+.|+|++| .|+.+++++|.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNN-QLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHcc
Confidence            356777777777 77777777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.12  E-value=0.003  Score=31.93  Aligned_cols=23  Identities=35%  Similarity=0.443  Sum_probs=16.4

Q ss_pred             CcccceecccccccccccCccccC
Q psy14513         46 LLNLQTLYCNFNPKLTFIHPYSFN   69 (209)
Q Consensus        46 l~~L~~L~Ls~n~~l~~i~~~~f~   69 (209)
                      |++|+.|+|++| .|+.+++++|.
T Consensus         1 L~~L~~L~L~~N-~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNN-QLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCC-cCCcCCHHHcc
Confidence            356777777777 77777777664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.95  E-value=0.0043  Score=30.13  Aligned_cols=17  Identities=29%  Similarity=0.534  Sum_probs=8.0

Q ss_pred             cCEEeccCCcCcccCCC
Q psy14513         74 LKEFYINNNAITSLPHE   90 (209)
Q Consensus        74 L~~L~Ls~N~l~~l~~~   90 (209)
                      |++||+++|+++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44445555544444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.94  E-value=0.017  Score=40.80  Aligned_cols=70  Identities=29%  Similarity=0.363  Sum_probs=43.0

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      +.+..+...+|.+..+|+.+.+.++  +..++..+|.+..+++.+.+.+ .+..++... ...+.++.+.+..|
T Consensus        21 ~~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   21 NTIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             ST--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             CCeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            4677888888888878888887554  6778888888777788888865 666666655 66777777777543

>KOG1859|consensus

Probab=95.86  E-value=0.0013  Score=59.60  Aligned_cols=56  Identities=20%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE   90 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~   90 (209)
                      ++|.+..++ .++.-++.|+.|+|++| ++...+  ....++.|++|||+.|.++.+|.-
T Consensus       172 syN~L~~mD-~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l  227 (1096)
T KOG1859|consen  172 SYNRLVLMD-ESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL  227 (1096)
T ss_pred             chhhHHhHH-HHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccchhcccccc
Confidence            778887765 45667899999999999 888877  566789999999999999998853

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.86  E-value=0.0033  Score=30.56  Aligned_cols=21  Identities=43%  Similarity=0.388  Sum_probs=14.6

Q ss_pred             ccceecccccccccccCccccCC
Q psy14513         48 NLQTLYCNFNPKLTFIHPYSFNN   70 (209)
Q Consensus        48 ~L~~L~Ls~n~~l~~i~~~~f~~   70 (209)
                      +|++||+++| .++.++++ |.+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTT-TTT
T ss_pred             CccEEECCCC-cCEeCChh-hcC
Confidence            4677777787 77777666 543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207|consensus

Probab=95.75  E-value=0.0029  Score=53.98  Aligned_cols=76  Identities=25%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCccc--CCC-----CCCCCCccEEEe
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSL--PHE-----LGDWDSLEVLDI  102 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l--~~~-----~~~l~~L~~l~l  102 (209)
                      ..|+...+....+.-+..|++|||++| .+-..+. .....++.|..|+++.+.+.++  |+.     ...+++|++|++
T Consensus       230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  230 EANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             hcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence            344444455555566667777777777 5555443 2233356677777777777763  222     134567778888


Q ss_pred             eCCCC
Q psy14513        103 QSNPW  107 (209)
Q Consensus       103 ~~Np~  107 (209)
                      ..|+.
T Consensus       309 ~~N~I  313 (505)
T KOG3207|consen  309 SENNI  313 (505)
T ss_pred             ccCcc
Confidence            77775

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.59  E-value=0.0081  Score=27.26  Aligned_cols=16  Identities=44%  Similarity=0.760  Sum_probs=7.0

Q ss_pred             CcCEEeccCCcCcccC
Q psy14513         73 SLKEFYINNNAITSLP   88 (209)
Q Consensus        73 ~L~~L~Ls~N~l~~l~   88 (209)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665544

...

>KOG0531|consensus

Probab=95.56  E-value=0.0032  Score=54.29  Aligned_cols=85  Identities=21%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCC
Q psy14513         16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDW   94 (209)
Q Consensus        16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l   94 (209)
                      ....+|..|.+    ++|.|+.+.+-.  .++.|+.|++++| .|+.+.....  +..|+.+++++|++..+... ...+
T Consensus       115 ~~~~~L~~L~l----s~N~I~~i~~l~--~l~~L~~L~l~~N-~i~~~~~~~~--l~~L~~l~l~~n~i~~ie~~~~~~~  185 (414)
T KOG0531|consen  115 SSLVNLQVLDL----SFNKITKLEGLS--TLTLLKELNLSGN-LISDISGLES--LKSLKLLDLSYNRIVDIENDELSEL  185 (414)
T ss_pred             hhhhcchheec----cccccccccchh--hccchhhheeccC-cchhccCCcc--chhhhcccCCcchhhhhhhhhhhhc
Confidence            33455666777    999999998643  4677999999999 9998877543  78899999999999988763 3556


Q ss_pred             CCccEEEeeCCCCcc
Q psy14513         95 DSLEVLDIQSNPWTC  109 (209)
Q Consensus        95 ~~L~~l~l~~Np~~C  109 (209)
                      .++..+.+.+|....
T Consensus       186 ~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  186 ISLEELDLGGNSIRE  200 (414)
T ss_pred             cchHHHhccCCchhc
Confidence            677777777776654

>KOG2739|consensus

Probab=95.55  E-value=0.0088  Score=47.72  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             CcccccceeccccccccccccccCchhhcCCcccceeccccccccc---ccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513         16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLT---FIHPYSFNNDWSLKEFYINNNAITSLPHEL-   91 (209)
Q Consensus        16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~---~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-   91 (209)
                      +.+.++..|.+    .+-.++++.  .|..|++|+.|.++.| ...   .++.-+-. .++|+++++++|+++-+. .+ 
T Consensus        40 d~~~~le~ls~----~n~gltt~~--~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~ls-tl~  110 (260)
T KOG2739|consen   40 DEFVELELLSV----INVGLTTLT--NFPKLPKLKKLELSDN-YRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLS-TLR  110 (260)
T ss_pred             ccccchhhhhh----hccceeecc--cCCCcchhhhhcccCC-cccccccceehhhh-CCceeEEeecCCcccccc-ccc
Confidence            34444444444    455555555  4567899999999999 432   23333333 488999999999998532 22 


Q ss_pred             --CCCCCccEEEeeCCCC
Q psy14513         92 --GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        92 --~~l~~L~~l~l~~Np~  107 (209)
                        ..+.+|..|++.+++-
T Consensus       111 pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcchhhhhcccCCc
Confidence              5567788888877643

>KOG3207|consensus

Probab=95.46  E-value=0.0079  Score=51.43  Aligned_cols=77  Identities=19%  Similarity=0.171  Sum_probs=41.7

Q ss_pred             ccccccccCc-hhhcCCcccceecccccccccccCcccc------CCCCCcCEEeccCCcCcccCC--CCCCCCCccEEE
Q psy14513         31 ANSELYAIRK-NTFKNLLNLQTLYCNFNPKLTFIHPYSF------NNDWSLKEFYINNNAITSLPH--ELGDWDSLEVLD  101 (209)
Q Consensus        31 s~n~l~~l~~-~~f~~l~~L~~L~Ls~n~~l~~i~~~~f------~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~l~  101 (209)
                      ++|++-..+. .....++.|..|.++.+ .+..+....-      ...++|++|+++.|++..++.  .+..+++|..+.
T Consensus       254 s~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  254 SNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             cCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            5666555542 33345566666666666 5555432111      224557777777777654432  124556666666


Q ss_pred             eeCCCCc
Q psy14513        102 IQSNPWT  108 (209)
Q Consensus       102 l~~Np~~  108 (209)
                      ...|++.
T Consensus       333 ~~~n~ln  339 (505)
T KOG3207|consen  333 ITLNYLN  339 (505)
T ss_pred             ccccccc
Confidence            6666664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.44  E-value=0.029  Score=39.55  Aligned_cols=65  Identities=31%  Similarity=0.391  Sum_probs=45.3

Q ss_pred             ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeC
Q psy14513         37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQS  104 (209)
Q Consensus        37 ~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~  104 (209)
                      .+++.+|.+..+|+.+.+. + .+..|...+|.+..+++.+.+.++ +..++... ...++++.+.+.+
T Consensus         2 ~i~~~~F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             EE-TTTTTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             EECHHHHhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            5788999999999999987 5 678999999999989999999885 88888777 7777899888854

>KOG2123|consensus

Probab=94.34  E-value=0.0016  Score=52.73  Aligned_cols=71  Identities=28%  Similarity=0.351  Sum_probs=45.5

Q ss_pred             cccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCCccEEEeeCCCC
Q psy14513         32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        32 ~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~l~l~~Np~  107 (209)
                      +..|..|.  ....++.|+.|.||-| +|+++.+-  ..+..|+.|+|..|.|..+..-.  .++++|+.|.|..||-
T Consensus        28 g~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   28 GCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             CCCccHHH--HHHhcccceeEEeecc-ccccchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            34444443  2345677777777777 77766653  34566777777777777765433  6777777777777774

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.32  E-value=0.017  Score=29.03  Aligned_cols=24  Identities=25%  Similarity=0.505  Sum_probs=17.6

Q ss_pred             cccCCCCCCCCcccccCCCCCcccCccC
Q psy14513        134 LHCSQPVKFSNVHLLSNPLLSHISGECV  161 (209)
Q Consensus       134 ~~C~~p~~l~g~~l~~~~~~~~~~~~C~  161 (209)
                      .+|+.|+.++| ++.++..   .++.|.
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~---~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPP---SDFKCS   25 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSG---GG----
T ss_pred             CccCCChHHcC-cHhhCCc---ccCcCC
Confidence            68999999999 9999987   777773

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.89  E-value=0.039  Score=27.69  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             CCCcCEEeccCCcCcccCCCC
Q psy14513         71 DWSLKEFYINNNAITSLPHEL   91 (209)
Q Consensus        71 l~~L~~L~Ls~N~l~~l~~~~   91 (209)
                      +++|+.|+|++|+++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.89  E-value=0.039  Score=27.69  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=18.0

Q ss_pred             CCCcCEEeccCCcCcccCCCC
Q psy14513         71 DWSLKEFYINNNAITSLPHEL   91 (209)
Q Consensus        71 l~~L~~L~Ls~N~l~~l~~~~   91 (209)
                      +++|+.|+|++|+++.+|.+.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998765

>KOG2982|consensus

Probab=93.65  E-value=0.054  Score=44.55  Aligned_cols=74  Identities=15%  Similarity=0.075  Sum_probs=37.4

Q ss_pred             ccccccccC--chhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC-CCC-CCCCCccEEEeeCC
Q psy14513         31 ANSELYAIR--KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        31 s~n~l~~l~--~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~-~~l~~L~~l~l~~N  105 (209)
                      .+|.|+...  .....+||.|+.|+|+.| .+..-....-.....|+.+-|.+..+..-- ... ..+|.++.+.++.|
T Consensus        79 ~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   79 TGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            566666543  234456666666666666 444322211112445666666655554311 112 55666666666666

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=92.66  E-value=0.22  Score=35.38  Aligned_cols=29  Identities=7%  Similarity=-0.059  Sum_probs=14.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14513        175 YKLYPLLFIMTLLLITLVVYLICMSYKYA  203 (209)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (209)
                      +.++++.++..+++++++++|+++|++++
T Consensus        66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk   94 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGIILLISYCIRRLRKK   94 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred             eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445555555555555555555544443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG4658|consensus

Probab=91.25  E-value=0.091  Score=49.67  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCC
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS   96 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~   96 (209)
                      |..++.|..|.+..+-.+..+| ...++|-+|++|++++. .++.+|.+ +..+..|.+|++..+.-...++.+ ..+++
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccchhhhccc
Confidence            5556666665333333445555 45578999999999999 99988776 445778999999977654444555 67889


Q ss_pred             ccEEEeeCC
Q psy14513         97 LEVLDIQSN  105 (209)
Q Consensus        97 L~~l~l~~N  105 (209)
                      |++|.+..-
T Consensus       644 Lr~L~l~~s  652 (889)
T KOG4658|consen  644 LRVLRLPRS  652 (889)
T ss_pred             ccEEEeecc
Confidence            998887554

>KOG0473|consensus

Probab=90.47  E-value=0.0096  Score=47.16  Aligned_cols=74  Identities=14%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      +.|++..+.. .|.-++.+..|+++.| .+..++.++-+ ...+..+++..|.++..|...+..+.++.+++-+|||
T Consensus        50 ~s~r~vn~~~-n~s~~t~~~rl~~skn-q~~~~~~d~~q-~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   50 SSNRLVNLGK-NFSILTRLVRLDLSKN-QIKFLPKDAKQ-QRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             hhhHHHhhcc-chHHHHHHHHHhccHh-hHhhChhhHHH-HHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence            7888887764 4667888999999999 99998887544 6778999999999999998888999999999999986

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=90.42  E-value=0.83  Score=25.22  Aligned_cols=13  Identities=23%  Similarity=0.782  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHH
Q psy14513        186 LLLITLVVYLICM  198 (209)
Q Consensus       186 ~~~~~~~~~~~~~  198 (209)
                      +++++.+.|..|+
T Consensus        18 iiii~~~~YaCcy   30 (38)
T PF02439_consen   18 IIIICMFYYACCY   30 (38)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.38  E-value=0.27  Score=24.88  Aligned_cols=18  Identities=56%  Similarity=0.731  Sum_probs=14.6

Q ss_pred             CCcCEEeccCCcCcccCC
Q psy14513         72 WSLKEFYINNNAITSLPH   89 (209)
Q Consensus        72 ~~L~~L~Ls~N~l~~l~~   89 (209)
                      ++|+.|+.++|+|+++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457888888888888875

>KOG3665|consensus

Probab=89.09  E-value=0.35  Score=44.65  Aligned_cols=82  Identities=16%  Similarity=0.114  Sum_probs=42.2

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCC------
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPH------   89 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~------   89 (209)
                      |-+|..|++    |+.+++.+  .....|.+|+.|.+.+= .+..-..  +-|. +..|++||+|..+....+.      
T Consensus       172 FpNL~sLDI----S~TnI~nl--~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYl  243 (699)
T KOG3665|consen  172 FPNLRSLDI----SGTNISNL--SGISRLKNLQVLSMRNL-EFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYL  243 (699)
T ss_pred             cCccceeec----CCCCccCc--HHHhccccHHHHhccCC-CCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHH
Confidence            444455555    56666555  23345555555555554 3332111  2233 6677777777665544331      


Q ss_pred             CC-CCCCCccEEEeeCCCC
Q psy14513         90 EL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        90 ~~-~~l~~L~~l~l~~Np~  107 (209)
                      +. ..+|.|+.||.++...
T Consensus       244 ec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  244 ECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             HhcccCccccEEecCCcch
Confidence            11 3467777776665433

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.75  E-value=0.27  Score=24.86  Aligned_cols=17  Identities=35%  Similarity=0.337  Sum_probs=9.2

Q ss_pred             cccceecccccccccccC
Q psy14513         47 LNLQTLYCNFNPKLTFIH   64 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~~i~   64 (209)
                      .+|+.|+++.| +|+.|.
T Consensus         2 ~~L~~L~L~~N-kI~~IE   18 (26)
T smart00365        2 TNLEELDLSQN-KIKKIE   18 (26)
T ss_pred             CccCEEECCCC-ccceec
Confidence            34555566666 555543

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=88.24  E-value=1.1  Score=29.60  Aligned_cols=25  Identities=8%  Similarity=0.489  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513        185 TLLLITLVVYLICMSYKYARNHVPY  209 (209)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~r~~~~~  209 (209)
                      .+++++++.|++|+..|+|.|..-|
T Consensus        42 ~iFil~VilwfvCC~kRkrsRrPIY   66 (94)
T PF05393_consen   42 GIFILLVILWFVCCKKRKRSRRPIY   66 (94)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCcc
Confidence            3345555667777766666665444

; GO: 0016021 integral to membrane

>KOG2982|consensus

Probab=87.91  E-value=0.3  Score=40.30  Aligned_cols=79  Identities=16%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             cccccccCc-hhhc-CCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC-
Q psy14513         32 NSELYAIRK-NTFK-NLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN-  105 (209)
Q Consensus        32 ~n~l~~l~~-~~f~-~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N-  105 (209)
                      +..|..+.. ..|+ ..+.++++||.+| .|+.+..  .....++.|+.|+|+.|.+.+.-... ..+.+|+.+-|.|. 
T Consensus        54 ~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   54 GSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             CCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence            344444432 2333 4566899999999 9988765  33556899999999999998743333 46678888888775 


Q ss_pred             -CCcccc
Q psy14513        106 -PWTCDC  111 (209)
Q Consensus       106 -p~~C~C  111 (209)
                       +|.|.-
T Consensus       133 L~w~~~~  139 (418)
T KOG2982|consen  133 LSWTQST  139 (418)
T ss_pred             CChhhhh
Confidence             566643

>KOG1909|consensus

Probab=86.57  E-value=0.22  Score=41.59  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=40.0

Q ss_pred             ccccccccC----chhhcCCcccceecccccccccccC----ccccCCCCCcCEEeccCCcCcccC-----CCCCCCCCc
Q psy14513         31 ANSELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFNNDWSLKEFYINNNAITSLP-----HELGDWDSL   97 (209)
Q Consensus        31 s~n~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L   97 (209)
                      ++|.+..-+    ...|+..+.|+.+.++.| .|..-.    ..+|...++|++|||++|-++..-     .....++.|
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            455554432    355666667777777777 554321    234555666777777777665421     111445556


Q ss_pred             cEEEeeC
Q psy14513         98 EVLDIQS  104 (209)
Q Consensus        98 ~~l~l~~  104 (209)
                      +.+++++
T Consensus       244 ~El~l~d  250 (382)
T KOG1909|consen  244 RELNLGD  250 (382)
T ss_pred             eeecccc
Confidence            6665544

>PRK15386 type III secretion protein GogB; Provisional

Probab=86.53  E-value=1.2  Score=38.61  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCcccCC
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITSLPH   89 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~   89 (209)
                      +..|.+    +++.|..+|.  +  ..+|+.|.++++..++.++. .+  ..+|+.|++++| .+..+|.
T Consensus        54 l~~L~I----s~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         54 SGRLYI----KDCDIESLPV--L--PNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             CCEEEe----CCCCCcccCC--C--CCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccccc
Confidence            344555    6667777761  1  23577777776425544432 22  245777777766 5555553

>KOG2123|consensus

Probab=86.15  E-value=0.067  Score=43.59  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=46.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITS   86 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~   86 (209)
                      |-|.|+++.+  |..++.|++|||..| .|..++. ....++++|+.|.|..|.-..
T Consensus        49 SvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   49 SVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             eccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            7899999874  567899999999999 9999987 557789999999999997654

>KOG2739|consensus

Probab=85.99  E-value=0.56  Score=37.65  Aligned_cols=62  Identities=21%  Similarity=0.231  Sum_probs=45.1

Q ss_pred             cCCcccceecccccccccccCccccCCCCCcCEEeccCC--cCcc-cCCCCCCCCCccEEEeeCCCCc
Q psy14513         44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN--AITS-LPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        44 ~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N--~l~~-l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ..+..|+.+.+.+- .++++..  |..++.|+.|.++.|  +.+. ++.-...+|+|+++++++|..+
T Consensus        40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34566777777777 6665544  455789999999999  5544 4433355699999999999764

>KOG3665|consensus

Probab=85.22  E-value=0.35  Score=44.61  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=32.1

Q ss_pred             cCCcccceecccccccccccC-ccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513         44 KNLLNLQTLYCNFNPKLTFIH-PYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS  104 (209)
Q Consensus        44 ~~l~~L~~L~Ls~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~  104 (209)
                      .-+|+|+.|.+++- .+..-+ ...+.+.++|..||+|+.+++.+ .+++.+++|+.|.+.+
T Consensus       145 ~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  145 TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            45677777777765 433222 12344566677777777777655 2334444444443333

>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ]

Probab=82.60  E-value=1.6  Score=31.75  Aligned_cols=44  Identities=32%  Similarity=0.516  Sum_probs=19.3

Q ss_pred             ccCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy14513        159 ECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYAR  204 (209)
Q Consensus       159 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  204 (209)
                      .|..+....++.++-.+.  +++.++++++++++..++|.++++++
T Consensus        16 ecls~~~~psffsthm~t--ILiaIvVliiiiivli~lcssRKkKa   59 (189)
T PF05568_consen   16 ECLSPVTPPSFFSTHMYT--ILIAIVVLIIIIIVLIYLCSSRKKKA   59 (189)
T ss_pred             hhcCCCCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            465555444444443322  33333334444444445555544443

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=80.04  E-value=2.4  Score=31.73  Aligned_cols=29  Identities=21%  Similarity=0.149  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513        181 LFIMTLLLITLVVYLICMSYKYARNHVPY  209 (209)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  209 (209)
                      ++++..++++++++.+++.+++.|+--+|
T Consensus       101 l~g~s~l~i~yfvir~~R~r~~~rktRkY  129 (163)
T PF06679_consen  101 LVGLSALAILYFVIRTFRLRRRNRKTRKY  129 (163)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccceee
Confidence            33334444444444444444433433344

Their function is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	209
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-09
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		5e-08
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		6e-07
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-07
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-06
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		3e-06
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-06
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		3e-06
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		9e-06
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		1e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-05
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		9e-05
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		3e-04
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		3e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		4e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-04

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
           +N+ +  +   +F N+  L TL  ++N +L  I P +F+   SL+   ++ N I+ +P  
Sbjct: 62  SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Query: 90  ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              D  +L  L I +NP  CDC++QWL D+V K +  +P +     C+ P + ++  LL+
Sbjct: 121 AFNDLSALSHLAIGANPLYCDCNMQWLSDWV-KSEYKEPGIA---RCAGPGEMADKLLLT 176
Query: 150 NP 151
            P
Sbjct: 177 TP 178

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
           + + L AIR  +F+ L++LQ L+     ++  I   +F+N  SL E  + +N +T LPH+
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWM-IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 91  L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
           L      LE + +  NPW C+C I WL
Sbjct: 274 LFTPLHHLERIHLHHNPWNCNCDILWL 300

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
            + + ++ +  F+ L +L  L  + N ++  +HP++F +   L   Y+  N +++LP E 
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 91  LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
           L    +L+ L +  NPW CDC  + L  ++ K + +  E+     CS P + +   L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP----CSLPQRLAGRDL 273

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
            + + ++ +  F+ L +L  L  + N ++  +HP++F +   L   Y+  N +++LP E 
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Query: 91  LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
           L    +L+ L +  NPW CDC  + L  ++ K + +  E+     CS P + +   L
Sbjct: 220 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP----CSLPQRLAGRDL 272

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS 96
           IR  +F  L +L+ L+   N +++ I   +F+   SL E  + +N ++SLPH+L      
Sbjct: 233 IRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291
Query: 97  LEVLDIQSNPWTCDCSIQWL 116
           L  L +  NPW CDC I WL
Sbjct: 292 LVELHLHHNPWNCDCDILWL 311

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFN-----PKLTF------------------IHPYSF 68
           ++ L A+  NTF++L NL  L+ + N     P+  F                  +HP++F
Sbjct: 137 DNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Query: 69  NNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTD 127
            +   L   Y+  N ++ LP E L    SL+ L +  NPW CDC  + L  ++ K + + 
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSS 256
Query: 128 PELNYNL 134
            E+  NL
Sbjct: 257 SEVPCNL 263

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
           + + L  IR  +F+ L +L+ L+   + ++  I   +F++  SL+E  +++N + SLPH+
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD 244
Query: 91  L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
           L      LE + +  NPW C+C + WL
Sbjct: 245 LFTPLHRLERVHLNHNPWHCNCDVLWL 271

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
           + + L  IR  +F+ L +L+ L+   + ++  I   +F++  SL+E  +++N + SLPH+
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD 244
Query: 91  L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
           L      LE + +  NPW C+C + WL
Sbjct: 245 LFTPLHRLERVHLNHNPWHCNCDVLWL 271

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           N+++  +    F +L+NLQ LY N N KLT I    F+    L +  +N+N + S+P   
Sbjct: 42  NNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-- 98
Query: 92  GDWDSLEVLD---IQSNPWTCDC-SIQWLIDYVA 121
           G +D+L+ L    + +NPW C+C  I +L ++VA
Sbjct: 99  GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
            FK+L  L+ +    N  L  +    FNN  SLK   +  N ITS+  ++    + +L  
Sbjct: 560 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 618
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
           LD++ NP+ C C SI W ++++ +     PEL+ +  C+ P
Sbjct: 619 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 659

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
            FK+L  L+ +    N  L  +    FNN  SLK   +  N ITS+  ++    + +L  
Sbjct: 565 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 623
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
           LD++ NP+ C C SI W ++++ +     PEL+ +  C+ P
Sbjct: 624 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
            FK+L  L+ +    N  L  +    FNN  SLK   +  N ITS+  ++    + +L  
Sbjct: 555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
           LD++ NP+ C C SI W ++++ +     PEL+ +  C+ P
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
           EL ++ K  F  L +L+ L   +N +L  +   +F+    LK   ++NN +  +P   G 
Sbjct: 144 ELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE--GA 200
Query: 94  WDSLE---VLDIQSNPWTCDCSIQWLIDYVAK--RQRTDPELN 131
           +DSLE   +L +Q NPW C C+    I Y+AK  +++ D  L 
Sbjct: 201 FDSLEKLKMLQLQENPWDCTCNG---IIYMAKWLKKKADEGLG 240

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-------ELGD 93
           + F+ L +LQ LY N N  L  + P  F++  +L+   +N+N +T L H       E+ D
Sbjct: 474 DVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILD 532
Query: 94  -------------WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPV 140
                        + SL VLDI  N + C+C +   I+++     T      +++C  P 
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592
Query: 141 KFSNVHLLS 149
            FS V L S
Sbjct: 593 SFSGVSLFS 601

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 13  ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW 72
           IS D  +  +   +      ++L  I  N F+   ++Q L    N K+  I    F    
Sbjct: 44  ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLH 102
Query: 73  SLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELN 131
            LK   + +N I+  +P      +SL  L++ SNP+ C+C + W  +++ K+      LN
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS-----LN 157
Query: 132 YN-LHCSQPVKFSNVHLLSNP 151
                C  P K  +V +   P
Sbjct: 158 GGAARCGAPSKVRDVQIKDLP 178

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD- 93
           L  I    FKNL  L+++    N  L  + P+ F++  SL+   +  N ITS+  ++   
Sbjct: 548 LDEIPVGVFKNLFELKSINLGLN-NLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGP 606
Query: 94  -WDSLEVLDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
            + +L  LD++ NP+ C C SI W ++++ +      EL+ +  C+ P
Sbjct: 607 PFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELG 92
            L  ++   FK L +L+TL    N ++T +   SF    S++   + +N IT++ P    
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQP 139
              SL  L++ +NP+ C+C + WL +++ K++     +  N  C +P
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI----VTGNPRCQKP 193

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP----HELGD 93
           I  +    LL LQ +      +L  + PY+F     L+   ++ N +T+L     H +G+
Sbjct: 263 IEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321
Query: 94  WDSLEVLDIQSNPWTCDCSIQWL 116
              LE L + SNP  CDC + W+
Sbjct: 322 ---LETLILDSNPLACDCRLLWV 341

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.0 bits (213), Expect = 5e-20
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
               IR  +F  L +L+ L+   + +++ I   +F+   SL E  + +N ++SLPH+   
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
               L  L +  NPW CDC I WL  ++  R+           C  P+     +L+ 
Sbjct: 288 PLRYLVELHLHHNPWNCDCDILWLAWWL--REYIPTNSTCCGRCHAPMHMRGRYLVE 342

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I+ +TF++L +L+ L    N  +  I   +FN   SL    + +N +T +P         
Sbjct: 90  IQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148

Query: 97  LEVLDIQSNP 106
           L  L +++NP
Sbjct: 149 LRELWLRNNP 158

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           + +I    F  + +L  L      KL +I   +F   ++LK   +    I  +P+ L   
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPL 217

Query: 95  DSLEVLDIQSNP 106
             LE L++  N 
Sbjct: 218 VGLEELEMSGNH 229

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I    F  L +L TL    N  LT I   +F     L+E ++ NN I S+P        S
Sbjct: 114 IEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 97  LEVLDIQSN 105
           L  LD+   
Sbjct: 173 LMRLDLGEL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-L 91
            L  I    F+ L  L+ L+   N  +  I  Y+FN   SL    +     +  +     
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 92  GDWDSLEVLDIQSN 105
               +L+ L++   
Sbjct: 193 EGLFNLKYLNLGMC 206

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 85.2 bits (210), Expect = 6e-20
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
              L  +     + L  L+ L    +  L F+ P +F+    L    ++ NA+ SL  + 
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
               SL+ L +  NP  C C+++WL  +  +     PE     H   P+          P
Sbjct: 100 VQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVP 159

Query: 152 LLSH 155
            L  
Sbjct: 160 TLKV 163

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 85.9 bits (213), Expect = 7e-20
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            + +  I  +    LL LQ +      +L  + PY+F     L+   ++ N +T+L   +
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 92  -GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSN 150
                +LE L + SNP  CDC + W+     +             C+ P           
Sbjct: 316 FHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ----QPTCATPEFVQGKEFKDF 371

Query: 151 PLLSHISGECVKGALVISQLSTQ 173
           P +   +    + A +  + + Q
Sbjct: 372 PDVLLPNYFTCRRARIRDRKAQQ 394

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 9e-09
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
           L  I    F  L NL  L  + N K+  +  Y F + ++LK   + +N +  + H     
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 94  WDSLEVLDIQSN 105
            +SLE L ++  
Sbjct: 151 LNSLEQLTLEKC 162

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            + + A+    F NL NL+TL    N +L  I    F    +L +  I+ N I  L   +
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 92  -GDWDSLEVLDIQSNP 106
             D  +L+ L++  N 
Sbjct: 124 FQDLYNLKSLEVGDND 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
            +  + AIR  +FK L  L+ L  +  P L  + P       +L    I +  +T++P+ 
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYL 242

Query: 91  -LGDWDSLEVLDIQSNPWT 108
            +     L  L++  NP +
Sbjct: 243 AVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           + ++ F +  +L+ L  N N  ++ + P +FNN ++L+   + +N +  +P        +
Sbjct: 47  LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105

Query: 97  LEVLDIQSN 105
           L  LDI  N
Sbjct: 106 LTKLDISEN 114

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.6 bits (212), Expect = 8e-20
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
            L AIR  +F+ L++LQ L+   + ++  I   +F+N  SL E  + +N +T LPH+   
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
               LE + +  NPW C+C I WL  ++  +            C+ P      ++  
Sbjct: 277 PLHHLERIHLHHNPWNCNCDILWLSWWI--KDMAPSNTACCARCNTPPNLKGRYIGE 331

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I+ N+FK+L +L+ L  + N  +  I   +FN   +L    + +N +T++P+        
Sbjct: 79  IKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137

Query: 97  LEVLDIQSNP 106
           L+ L +++NP
Sbjct: 138 LKELWLRNNP 147

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           + +I    F  + +L+ L      +L++I   +F    +L+   +    +  +P+ L   
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPL 206

Query: 95  DSLEVLDIQSNPWT 108
             L+ LD+  N  +
Sbjct: 207 IKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            + +  I    F  L NL TL    N +LT I   +F     LKE ++ NN I S+P   
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155

Query: 92  -GDWDSLEVLDIQSNP 106
                SL  LD+    
Sbjct: 156 FNRIPSLRRLDLGELK 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 6/117 (5%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
            + ++ +  F+ L +L  L  + N ++  +HP++F +   L   Y+  N +++LP E L 
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              +L+ L +  NPW CDC  + L  ++ K + +       + CS P + +   L  
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS----SEVPCSLPQRLAGRDLKR 275

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I    F  L  L+ L  + N +L  + P +F+    L   +++   +  L         +
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 97  LEVLDIQSN 105
           L+ L +Q N
Sbjct: 131 LQYLYLQDN 139

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           N++L ++   TF  L  L TL+ +    L  + P  F    +L+  Y+ +NA+ +LP + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 91  LGDWDSLEVLDIQSN 105
             D  +L  L +  N
Sbjct: 149 FRDLGNLTHLFLHGN 163

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHE-LGDWD 95
           +   +F+   NL  L+ + N  L  I   +F     L++  +++NA + S+         
Sbjct: 47  VPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 96  SLEVLDIQSN 105
            L  L +   
Sbjct: 106 RLHTLHLDRC 115

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.6 bits (202), Expect = 9e-19
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
           L  +    F +L +LQ L  + N     +  + +    SL+    + N I +   +    
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              SL  L++  N + C C  Q  + ++  +++   E+   + C+ P     + +LS
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE-RMECATPSDKQGMPVLS 301

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPHELGDWD 95
           +    F  L  L  L  + N  L+F      S     SLK   ++ N + ++       +
Sbjct: 43  LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101

Query: 96  SLEVLDIQSNP 106
            LE LD Q + 
Sbjct: 102 QLEHLDFQHSN 112

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYS-FNNDWSLKEFYINNNAITSLPHE-LGDWDSLE 98
           + F  L  L+ L    +  L  +  +S F +  +L    I++       +       SLE
Sbjct: 95  SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 99  VLDIQSNPW 107
           VL +  N +
Sbjct: 154 VLKMAGNSF 162

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
               +     +L+ L  +FN  +  +   +F     L+     ++ +  +          
Sbjct: 69  CCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 96  SLEVLDIQSN 105
           +L  LDI   
Sbjct: 127 NLIYLDISHT 136

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 77.8 bits (192), Expect = 6e-18
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
            L  ++   FK L +L+TL    N ++T +   SF    S++   + +N IT++     D
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 94  W-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              SL  L++ +NP+ C+C + WL +++ K++        N  C +P     + +  
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTG----NPRCQKPYFLKEIPIQD 203

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
              I    FK+L  L+ +    N  L  +    FNN  SLK   +  N ITS+  ++   
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

Query: 93  DWDSLEVLDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
            + +L  LD++ NP+ C C SI W ++++ +     PEL+ +  C+ P  +    +  
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRL 664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
            ++ +  I+ N F    NL TL  + N  L+     +     +L+E  ++NN I +L  E
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 91  LGDWD---SLEVLDIQSNP 106
             D     SL+ L++ SN 
Sbjct: 164 ELDIFANSSLKKLELSSNQ 182

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
            + +  +     + L  L+ L    N +L+ +   +F    +L E ++ +N+I  +  + 
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 91  LGDWDSLEVLDIQSN 105
                +L  LD+  N
Sbjct: 117 FVKQKNLITLDLSHN 131

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PH 89
            ++EL  +   TF    NL  L+   N  +  I    F    +L    +++N ++S    
Sbjct: 81  QHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 90  ELGDWDSLEVLDIQSN 105
                ++L+ L + +N
Sbjct: 140 TQVQLENLQELLLSNN 155

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 37  AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD- 95
            +    ++ L N+  +Y ++N K   +   SF    SL+   +   A+ ++      +  
Sbjct: 420 ELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478

Query: 96  --SLEVLDIQSN 105
             +L +LD+ +N
Sbjct: 479 LRNLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGDWDS 96
           +    F     L +L   FN  ++ + P        LK   + +N ++ L         +
Sbjct: 40  LPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98

Query: 97  LEVLDIQSN 105
           L  L + SN
Sbjct: 99  LTELHLMSN 107

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 34  ELYAIRKNTFKNLLN--LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PH 89
            L  +   TF +L +  L  L    N K++ I   +F+    L+   +  N I       
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 90  ELGDWDSLEVLDIQSN 105
           E    +++  + +  N
Sbjct: 425 EWRGLENIFEIYLSYN 440

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLP 88
           + ++   + +N+F  + +LQ L       L  +   P  F    +L    ++NN I ++ 
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 89  -HELGDWDSLEVLDIQSN 105
              L   + LE+LD+Q N
Sbjct: 497 DDMLEGLEKLEILDLQHN 514

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW--SLKEFYINNNAITSL-PHEL 91
           L + +  T   L NLQ L  + N K+  +     +     SLK+  +++N I    P   
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 92  GDWDSLEVLDIQSNPWTCD 110
                L  L + +      
Sbjct: 192 HAIGRLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE---------L 91
           + F+ L NL  L  + N  +  I+         L+   + +N +  L            L
Sbjct: 474 SPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 92  GDWDSLEVLDIQSN 105
                L +L+++SN
Sbjct: 533 KGLSHLHILNLESN 546

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 41  NTFKNLLNLQTLYCNFN--------PKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHEL 91
           ++   L N++ L    +          L  I  +SF     L+   + +N I  +  +  
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

Query: 92  GDWDSLEVLDIQSN 105
               +L+ L + ++
Sbjct: 350 TGLINLKYLSLSNS 363

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 6/116 (5%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           +  + K+ F+ L +LQ L  N N K+  +   +F +  +L    + +N + ++       
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 95  -DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
             +++ + +  NP+ CDC ++WL DY+               C+ P + +N  +  
Sbjct: 151 LRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETS----GARCTSPRRLANKRIGQ 202

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
             +L  I    F  L  LQ L  + N  L F+    +N  +SL     + N I +    L
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 92  GDW-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
             +  SL   ++ +N   C C  Q  + +V ++++    +   + C+ PV+ +   +L 
Sbjct: 541 QHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE-QMTCATPVEMNTSLVLD 598

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HE 90
             E+  I    +  L +L  L    N  +    P SF+   SL+        + SL    
Sbjct: 65  RCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123

Query: 91  LGDWDSLEVLDIQSN 105
           +G   +L+ L++  N
Sbjct: 124 IGQLITLKKLNVAHN 138

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 13/143 (9%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LP 88
             + + +    +F  L +L+ L      KL  +  +      +LK+  + +N I S  LP
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 89  HELGDWDSLEVLDIQSNPWT--CDCSIQWLIDYVAKRQRTDPELNYN-LHCSQPVKFSNV 145
               +  +L  +D+  N         +Q+L +        D  ++ N +   Q   F  +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD--MSLNPIDFIQDQAFQGI 204

Query: 146 HLL-----SNPLLSHISGECVKG 163
            L       N   S+I   C++ 
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQN 227

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 1/72 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I    F  L  LQ L    +         +F +   L    I+                S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 97  LEVLDIQSNPWT 108
           L  L +  N + 
Sbjct: 450 LNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW--SLKEFYINNNAITSLPHELGDWDSLE 98
                L +L  L  + N  L+F    S+++    SL+   ++ N    +       + L+
Sbjct: 344 FKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402

Query: 99  VLDIQSN 105
            LD Q +
Sbjct: 403 HLDFQHS 409

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGD 93
           L +I ++ F +L  +  +  + N +LT     + ++   +    + +N I+ + P  L  
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545

Query: 94  WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152
                 ++++ NP  C CS  + +++  K      E   +  C  P     V L    L
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEWY-KENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 31  ANSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
            + +   I    F+ L  ++++++    +     I   +F+    L+E  +    ++ LP
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELP 294

Query: 89  HELGDWDSLEVLDIQSN 105
             L    +L+ L + +N
Sbjct: 295 SGLVGLSTLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
             ++Y I ++TF++   L TL    N  L F+   + +   +LK  +     I+S+    
Sbjct: 66  RCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

Query: 91  LGDWDSLEVLDIQSN 105
           L +  +LE L + SN
Sbjct: 125 LHNQKTLESLYLGSN 139

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYS-FNNDWSLKEFYINNNAITSLPHE-LG 92
             +++   FK    L+ L   F  +L      S F N   LK   ++++ +     +   
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 93  DWDSLEVLDIQSN 105
              +L+ L++Q N
Sbjct: 447 GLPALQHLNLQGN 459

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPH 89
           N++   +     +NL NL+ L  + +  +           N   L+   ++ N   SL  
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393

Query: 90  E-LGDWDSLEVLDIQSN 105
           E   +   LE+LD+   
Sbjct: 394 EAFKECPQLELLDLAFT 410

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-H 89
             + L  + +        L+ L+      ++ I     +N  +L+  Y+ +N I+S+   
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 90  ELGDWDSLEVLDIQSN 105
           +    + L+VLD Q+N
Sbjct: 148 KGFPTEKLKVLDFQNN 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I+  TF  L+NL  L      ++ +IH  +F +   L    +  N +  +    L    +
Sbjct: 48  IQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 97  LEVLDIQSN 105
           L+ L     
Sbjct: 107 LKHLFFIQT 115

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HE 90
               + I  NTF     LQ L       L+ + P       +LK+  ++ N   +L    
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTAT-HLSEL-PSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 91  LGDWDSLEVLDIQSN 105
             ++ SL  L I+ N
Sbjct: 321 ASNFPSLTHLSIKGN 335

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 4/75 (5%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I      N   L++LY   N  ++ I          LK     NNAI  L  E +     
Sbjct: 120 IDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 97  LEV--LDIQSNPWTC 109
                L++  N    
Sbjct: 179 ATNLSLNLNGNDIAG 193

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD-- 95
           + + +  N  +L  L    N K   +      N  +L+E  ++++ I +           
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 96  -SLEVLDIQSN 105
             L+ L++  N
Sbjct: 376 SHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
                 +NL +LQ+L  ++N +   +   +F     L+   +    +     +    +  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 96  SLEVLDIQSN 105
            L+VL++  +
Sbjct: 426 LLKVLNLSHS 435

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSLE 98
           +    L  L+ L  + N K   +   S +N  SL    I  N          L + ++L 
Sbjct: 295 SGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 99  VLDIQSN 105
            LD+  +
Sbjct: 354 ELDLSHD 360

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 4/117 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
           L  +    F +L +LQ L  + N     +  + +    SL+    + N I +   +    
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 93  DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
              SL  L++  N + C C  Q  + ++  +++   E+   + C+ P     + +LS
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE-RMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LPHELGDWD 95
              + F +L NL  L  +            FN   SL+   +  N+     LP    +  
Sbjct: 412 SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 96  SLEVLDIQSN 105
           +L  LD+   
Sbjct: 471 NLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
             E+  I    +++L +L TL    N  +  +   +F+   SL++       + SL    
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 91  LGDWDSLEVLDIQSN 105
           +G   +L+ L++  N
Sbjct: 120 IGHLKTLKELNVAHN 134

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--P 88
             + + ++    F  L +LQ L       L  +  +   +  +LKE  + +N I S   P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 89  HELGDWDSLEVLDIQSN 105
               +  +LE LD+ SN
Sbjct: 143 EYFSNLTNLEHLDLSSN 159

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPHE 90
           +        +  +L +L+ L  + N  L+F      S     SLK   ++ N + ++   
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

Query: 91  LGDWDSLEVLDIQSN 105
               + LE LD Q +
Sbjct: 392 FLGLEQLEHLDFQHS 406

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGD 93
           L  +   +F +   LQ L  +   ++  I   ++ +   L    +  N I SL       
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 94  WDSLEVLDIQSN 105
             SL+ L     
Sbjct: 99  LSSLQKLVAVET 110

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.8 bits (176), Expect = 4e-15
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW---SLKEFYINNNAITSLP 88
           N+ +  + +N F+++  LQ LY + N +++        +      L    +++N +  LP
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 89  HELGDWDS---LEVLDIQSNPWTCDCSIQWLID-YVAKRQRTDPELNYNLHCSQPVKFSN 144
                         L + +NP  CDC +  L   +  ++  +  +   +L+C    K  N
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN 239

Query: 145 VHLL 148
           +  L
Sbjct: 240 IFSL 243

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 39  RKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSL 97
            + T   L NL +L  + N  L FI   +F    +L+   +++N + +L      D  +L
Sbjct: 56  AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114

Query: 98  EVLDIQSNP 106
           EVL + +N 
Sbjct: 115 EVLLLYNNH 123

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 68.6 bits (168), Expect = 4e-14
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           L  +          L+ L    N  LT +     N   +L    +  N++ ++P      
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194

Query: 95  DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
             L    +  NPW C+C I +   ++    
Sbjct: 195 HLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 5e-14
 Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           ++ L ++    F +L  L+ L  N N +LT +         +L+   I+ N + +   ++
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPA--NLEILDISRNQLLAPNPDV 545

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
             + SL VLDI  N + C+C +   I+++     T      +++C  P  FS V L S  
Sbjct: 546 --FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603

Query: 152 LLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKY 202
                  E +K       +          L +  + ++T+  +       Y
Sbjct: 604 TEGCDEEEVLKSLKFSLFIVCTV-----TLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I    F  L NLQ L  ++N  L  ++  +F     +    +  N I  +  +     + 
Sbjct: 305 IADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

Query: 97  LEVLDIQSNPWTCDCSIQWL 116
           L+ LD++ N  T    I  +
Sbjct: 364 LQTLDLRDNALTTIHFIPSI 383

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           +  ++++    F+ L +L+ L   +N K+  I   +F    +L+   ++ N +  L    
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333

Query: 91  LGDWDSLEVLDIQSN 105
                 +  +D+Q N
Sbjct: 334 FYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL---P 88
                 I K  F+NL NL+ L    + K+ F+HP +F   + L E  +    ++      
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 89  HELGDWDSLEVLDIQSN 105
               +  +L  LD+  N
Sbjct: 117 GYFRNLKALTRLDLSKN 133

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DS 96
           +  ++F  L  LQ L          I   +F N  +L+   + ++ I  L  +       
Sbjct: 39  VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 97  LEVLDIQSN 105
           L  L +   
Sbjct: 99  LFELRLYFC 107

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 31  ANSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
               +    +NTF  L   +++ L  +    +  ++   F     LK   +  N I  + 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 89  -HELGDWDSLEVLDIQSN 105
                  D+L+VL++  N
Sbjct: 307 DEAFYGLDNLQVLNLSYN 324

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPH 89
            +S++Y +  + F+ L +L  L   F       +    F N  +L    ++ N I SL  
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140

Query: 90  E--LGDWDSLEVLDIQSN 105
               G  +SL+ +D  SN
Sbjct: 141 HPSFGKLNSLKSIDFSSN 158

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)

Query: 37  AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-- 94
            ++   F+NL  L  L  + N   +     SF    SLK    ++N I  +     +   
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 95  -DSLEVLDIQSNPWTCDCSIQWL 116
             +L    + +N      S+ W 
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWG 195

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.1 bits (164), Expect = 2e-13
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           L +I    F+NL  L+ L  ++N  +  +   SF    +LKE  ++ N + S+P  + D 
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393

Query: 95  -DSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
             SL+ + + +NPW C C  I +L  ++ K  + + 
Sbjct: 394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 429

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 4e-07
 Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 6/162 (3%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSL-P 88
             ++   +    F  L NL+ L           +    F    SL+   + +N I  + P
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 89  HELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
                      VLD+  N     C           +  T   L+          +     
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 148 LSNPL-LSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLL 188
             NP   + I+   + G      ++ +F+       I +L+L
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           + + +F  L +LQ L          I   +F    SL    ++ N    L         +
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104

Query: 97  LEVLDIQSN 105
           LEVL +   
Sbjct: 105 LEVLTLTQC 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-L 91
           SEL     N+       + +          +     N    L E   + N + S+P    
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIF 297

Query: 92  GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139
               SL+ + + +NPW C C  I +L  ++ K  + +     +  CS  
Sbjct: 298 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGS 343

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS 96
           I  +  +  +NLQ L    N  +  I   SF++  SL+   ++ N +++L         S
Sbjct: 67  ISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 97  LEVLDIQSNPWTC 109
           L  L++  NP+  
Sbjct: 126 LTFLNLLGNPYKT 138

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
                 I++  F  L  L+ L  + +  L    P S  +  ++    ++      L    
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 92  GDW-DSLEVLDIQSNPWT 108
            D   S+E L+++     
Sbjct: 218 VDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           ++ +  I +++F +L +L+ L  ++N  L+ +    F    SL    +  N   +L    
Sbjct: 85  SNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143

Query: 91  -LGDWDSLEVLDIQSNP 106
                  L++L + +  
Sbjct: 144 LFSHLTKLQILRVGNMD 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
           + F +L  LQ L        T I    F     L+E  I+ + + S   + L    ++  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 100 LDIQSNP 106
           L +    
Sbjct: 203 LILHMKQ 209

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
           + F  L NL  L  +   +L  + P +FN+  SL+   + +N + S+P        SL+ 
Sbjct: 464 DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522

Query: 100 LDIQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
           + + +NPW C C  I +L  ++ K  + + 
Sbjct: 523 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--P 88
             + + ++    F  L +LQ L       L  +  +   +  +LKE  + +N I S   P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 89  HELGDWDSLEVLDIQSNPWTC 109
               +  +LE LD+ SN    
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
             E+  I    +++L +L TL    N  +  +   +F+   SL++       + SL +  
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 91  LGDWDSLEVLDIQSN 105
           +G   +L+ L++  N
Sbjct: 120 IGHLKTLKELNVAHN 134

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFI--HPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98
            +  +L +L+ L  + N  L+F      S     SLK   ++ N + ++       + LE
Sbjct: 341 FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 99  VLDIQSN 105
            LD Q +
Sbjct: 400 HLDFQHS 406

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           +   +F +   LQ L  +   ++  I   ++ +   L    +  N I SL         S
Sbjct: 43  LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 97  LEVLDIQSN 105
           L+ L     
Sbjct: 102 LQKLVAVET 110

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
           + F  L  L+ L    +          F +  +L    I++       +       SLEV
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 100 LDIQSNPWT 108
           L +  N + 
Sbjct: 450 LKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LPHELGDWDSLE 98
           + F +L NL  L  +            FN   SL+   +  N+     LP    +  +L 
Sbjct: 415 SVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 99  VLDIQSN 105
            LD+   
Sbjct: 474 FLDLSQC 480

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
               +     +L+ L  +FN  +  +   +F     L+     ++ +  +          
Sbjct: 364 CCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 96  SLEVLDIQSNPWT 108
           +L  LDI      
Sbjct: 422 NLIYLDISHTHTR 434

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 60.2 bits (146), Expect = 3e-12
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 73  SLKEFYINNNAITSLPHELGDW-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELN 131
              E  +  N +T+LP  L D   +L    + +NPW CDC +  L  ++    R +    
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL--AGRPERAPY 89

Query: 132 YNLHCSQPVKFSNVHLLS 149
            +L C  P       L  
Sbjct: 90  RDLRCVAPPALRGRLLPY 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            ++L  I  N F+   ++Q L    N K+  I    F     LK   + +N I+ +    
Sbjct: 63  RNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-- 119

Query: 92  GDWD---SLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
           G ++   SL  L++ SNP+ C+C + W  +++ K+ 
Sbjct: 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
           EL ++ K  F  L +L+ L    N +L  +   +F+    LK   ++NN +  +P    D
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202

Query: 94  W-DSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCS---QPVK 141
             + L++L +Q NPW C C+ I ++  ++ K+            C    + V 
Sbjct: 203 SLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVL 255

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DS 96
           +    F  L  L+ LY N N KL  +    F    +L+  ++ +N + +LP  + D   +
Sbjct: 52  LPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110

Query: 97  LEVLDIQSN 105
           L  L +  N
Sbjct: 111 LAELRLDRN 119

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD---SL 97
             F  L+NL  L  + N +L  + P  F++   L    +  N + SLP   G +D   SL
Sbjct: 103 GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSL 159

Query: 98  EVLDIQSN 105
           + L + +N
Sbjct: 160 KELRLYNN 167

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           +++L  +    FK L NL+TL+   N KL  +    F+   +L E  ++ N + SLP   
Sbjct: 70  DNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPP-- 126

Query: 92  GDWDS---LEVLDIQSN 105
             +DS   L  L +  N
Sbjct: 127 RVFDSLTKLTYLSLGYN 143

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           N+ +  +   +F N+  L TL  ++N +L  I P +F+   SL+   ++ N I+ +P   
Sbjct: 63  NNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-- 119

Query: 92  GDWD---SLEVLDIQSNPWTCDCSIQWLIDYVAK 122
           G ++   +L  L I +NP  CDC++QWL D+V  
Sbjct: 120 GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 35  LYAIRKNTFKNLLNLQ----TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
           + +I     + L  +     +L  + N  + FI P +F     LKE  ++ N + S+P  
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218

Query: 91  LGD-WDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQPVK 141
           + D   SL+ + + +NPW C C  I +L  ++ K  + +     +  CS   K
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGSGK 268

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 26  LPYSTANSELY-----AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYIN 80
           LP+ST N +L       +   +F +   LQ L  +   ++  I   ++ +   L    + 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 84

Query: 81  NNAITSLPHEL-GDWDSLEVLDIQSNP 106
            N I SL         SL+ L      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETN 111

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
             E+  I    +++L +L TL    N  +  +   +F+   SL++       + SL +  
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119

Query: 92  -GDWDSLEVLDIQSN 105
            G   +L+ L++  N
Sbjct: 120 IGHLKTLKELNVAHN 134

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
               L+TL  + N KL F+ P  F +   +    + NN +  +   L    +LE  D++ 
Sbjct: 189 VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 105 NPWTCDCSIQWL 116
           N + C     + 
Sbjct: 247 NGFHCGTLRDFF 258

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           +S L     +  ++  N++ L  + N  L+ I          L+   +++N +     +L
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL-DL 76

Query: 92  GDWDSLEVLDIQSN 105
               +L  LD+ +N
Sbjct: 77  ESLSTLRTLDLNNN 90

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-SLKEFYINNNAITSLPHELGD 93
           +  +R         +Q L    N ++  ++         +L+   +  N I  +  ++  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV- 189

Query: 94  WDSLEVLDIQSN 105
           +  L+ LD+ SN
Sbjct: 190 FAKLKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDI 102
                + +Y   N K+T +          ++   +  N I ++         D+LE L++
Sbjct: 118 RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 103 QSN 105
           Q N
Sbjct: 177 QYN 179

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.1 bits (143), Expect = 1e-10
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 7/123 (5%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
               L+TL  + N KL F+ P  F +   +    + NN +  +   L    +LE  D++ 
Sbjct: 189 VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 105 NPWTCDCSIQWL-----IDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGE 159
           N + C     +      +  VAK+            C+ P            L +  +  
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 160 CVK 162
            + 
Sbjct: 307 LIA 309

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           +S L     +  ++  N++ L  + N  L+ I          L+   +++N +     +L
Sbjct: 19  DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL-DL 76

Query: 92  GDWDSLEVLDIQSN 105
               +L  LD+ +N
Sbjct: 77  ESLSTLRTLDLNNN 90

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-SLKEFYINNNAITSLPH 89
           AN+++  +R         +Q L    N ++  ++         +L+   +  N I  +  
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 90  ELGDWDSLEVLDIQSN 105
           ++  +  L+ LD+ SN
Sbjct: 187 QVV-FAKLKTLDLSSN 201

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
           I          L  L    N ++  I   S +   +L+E +++NN ++ +P  L D   L
Sbjct: 208 IELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266

Query: 98  EVLDIQSNPWT 108
           +V+ + +N  T
Sbjct: 267 QVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
           +RK+ FK L +L  L    N K++ IH  +F+    L++ YI+ N +  +P  L    SL
Sbjct: 69  LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSL 125

Query: 98  EVLDIQSN 105
             L I  N
Sbjct: 126 VELRIHDN 133

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           N+++  I +  F  L  LQ LY + N  L  I P   ++   L E  I++N I  +P   
Sbjct: 87  NNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSS---LVELRIHDNRIRKVPKGV 142

Query: 91  LGDWDSLEVLDIQSNP 106
                ++  +++  NP
Sbjct: 143 FSGLRNMNCIEMGGNP 158

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--- 88
           ++++  I   +   L  L+ L+ + N KL+ + P    +   L+  Y++ N IT +    
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNN-KLSRV-PAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 89  ----HELGDWDSLEVLDIQSNPWTC 109
                          + + +NP   
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
            +  + K  F  L N+  +    NP + +   P +F+    L    I+   +T +P +L 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDL- 191

Query: 93  DWDSLEVLDIQSN 105
             ++L  L +  N
Sbjct: 192 -PETLNELHLDHN 203

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
           L  I K+  + L     L+ + N K+  I          L    + +N I  + +  L  
Sbjct: 184 LTGIPKDLPETL---NELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239

Query: 94  WDSLEVLDIQSNP 106
             +L  L + +N 
Sbjct: 240 LPTLRELHLDNNK 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           +  +   + K L NL  L  +FN  ++ +   S  N   L+E ++NNN +  +P  L D 
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262

Query: 95  DSLEVLDIQSNP 106
             ++V+ + +N 
Sbjct: 263 KYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 37  AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS 96
            I+   FKNL NL TL    N K++ I P +F     L+  Y++ N +  LP ++    +
Sbjct: 66  EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKT 122

Query: 97  LEVLDIQSN 105
           L+ L +  N
Sbjct: 123 LQELRVHEN 131

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--- 88
            + + A+   +  N  +L+ L+ N N KL  + P    +   ++  Y++NN I+++    
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 89  ----HELGDWDSLEVLDIQSNPWTC 109
                      S   + + SNP   
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           N+++  I    F  L+ L+ LY + N +L  +          L+E  ++ N IT +    
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKT---LQELRVHENEITKVRKSV 140

Query: 91  LGDWDSLEVLDIQSNP 106
               + + V+++ +NP
Sbjct: 141 FNGLNQMIVVELGTNP 156

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
           E+  +RK+ F  L  +  +    NP K + I   +F     L    I +  IT++P  L 
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 190

Query: 93  DWDSLEVLDIQSN 105
              SL  L +  N
Sbjct: 191 -PPSLTELHLDGN 202

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 21/90 (23%)

Query: 38  IRKNTFKNLLNLQTLYCNFNP--------------------KLTFIHPYSFNNDWSLKEF 77
           I    F+ +  L  +                          K+T +   S     +L + 
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 78  YINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
            ++ N+I+++ +  L +   L  L + +N 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNK 251

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLD 101
              L  LQ LY + N KL  +   S      L    I+ N + S+P        SL+ + 
Sbjct: 447 SLFLPRLQELYISRN-KLKTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 102 IQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139
           + +NPW C C  I +L  ++ K  + +     +  CS  
Sbjct: 504 LHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGS 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
           I     +   NLQ L    + ++  I   +F +  SL+   +++N ++SL     G   S
Sbjct: 41  IGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 97  LEVLDIQSNP 106
           L+ L++  NP
Sbjct: 100 LKYLNLMGNP 109

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
                L NL +L  + N     + P S      ++   +++  I  +   +    +LEVL
Sbjct: 381 EILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436

Query: 101 DIQSN 105
           D+ +N
Sbjct: 437 DVSNN 441

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFI--HPYSFNNDWSLKEFYINNNAITSLPHE 90
            E Y           +LQTL  + N  L  +           +L    I+ N    +P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405

Query: 91  LGDWDSLEVLDIQSN 105
               + +  L++ S 
Sbjct: 406 CQWPEKMRFLNLSST 420

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-- 89
           +S +  I  + F +L +L+ L  + N  L+ +    F    SLK   +  N   +L    
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 90  ELGDWDSLEVLDIQSN 105
              +  +L+ L I + 
Sbjct: 118 LFPNLTNLQTLRIGNV 133

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLY--CNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
            NS+++ +  +  ++L +L+ L    N   +    +        SL+   ++ N + S+ 
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377

Query: 89  HELG---DWDSLEVLDIQSNP-WTCDCSIQWL 116
                     +L  LDI  N       S QW 
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVL 100
            F NL NLQTL        + I    F    SL E  I   ++ +   + L     +  L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177

Query: 101 DIQSN 105
            +  +
Sbjct: 178 TLHLS 182

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPH 89
           +++ L ++  + F  L +L+ L    NP  T      F N  +L+   I N    + +  
Sbjct: 82  SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 90  E-LGDWDSLEVLDIQSN 105
                  SL  L+I++ 
Sbjct: 142 IDFAGLTSLNELEIKAL 158

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
           +  L  +  ++F NL  +  +       LT+I P +      LK   I N  +   P   
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 91  -LGDWDSLEVLDIQSNP 106
            +   D   +L+I  NP
Sbjct: 125 KVYSTDIFFILEITDNP 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-LGDWD 95
           I  + F NL N+  +Y + +  L  +  +SF N   +    I N   +T +  + L +  
Sbjct: 46  IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105

Query: 96  SLEVLDIQSN 105
            L+ L I + 
Sbjct: 106 LLKFLGIFNT 115

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWS-LKEFYINNNAITSLPHELGDWDS 96
           ++   F N   L  +Y N N  LT I   +F   +S      ++  ++T+LP +    + 
Sbjct: 171 VQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEH 227

Query: 97  LEVLDIQSNP 106
           L+ L  ++  
Sbjct: 228 LKELIARNTW 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           N  L  I  + F NL  L  +       L +I+P +F N  +L+   I+N  I  LP   
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 92  GDW-DSLEVLDIQSNP 106
                   +LDIQ N 
Sbjct: 124 KIHSLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 21/106 (19%)

Query: 31  ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
             + +  I  + F N   L  L  + N  L  +    F+         I+   I SLP  
Sbjct: 162 NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

Query: 91  -LGDWDSLEVLDIQ-------------------SNPWTCDCSIQWL 116
            L +   L                         + P  C     W 
Sbjct: 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWR 266

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-LGDWD 95
           I+K  F    +L+ +  + N  L  I    F+N   L E  I   N +  +  E   +  
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104

Query: 96  SLEVLDIQSN 105
           +L+ L I + 
Sbjct: 105 NLQYLLISNT 114

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
              N   L  +  ++N +L  I  + F     L+  YI+NN + +L        +L+VLD
Sbjct: 243 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301

Query: 102 IQSN 105
           +  N
Sbjct: 302 LSHN 305

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
           EL  I  + F  +  L+ LY + N +L  +         +LK   +++N +  +      
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316

Query: 94  WDSLEVLDIQSN---------------------PWTCDCSIQWLIDYVAKRQRTDPELNY 132
           +D LE L +  N                      W C+       +    R   D   + 
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVD---DA 371

Query: 133 NLHCSQPVKFSN 144
           + HC    +  +
Sbjct: 372 DQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           + ++  I    F     +Q LY  FN  + ++ P+ F N   L    +  N ++SLP  +
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136

Query: 92  -GDWDSLEVLDIQSN 105
             +   L  L + +N
Sbjct: 137 FHNTPKLTTLSMSNN 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           NS +  +      +   ++ L  N   ++  I  Y+F    ++++ Y+  NAI  LP  +
Sbjct: 54  NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

Query: 92  GDW-DSLEVLDIQSN 105
                 L VL ++ N
Sbjct: 113 FQNVPLLTVLVLERN 127

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
           +  +  + F+N+  L  L    N  L+ +    F+N   L    ++NN +  +  +    
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 94  WDSLEVLDIQSN 105
             SL+ L + SN
Sbjct: 164 TTSLQNLQLSSN 175

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
           +L ++ +  F N   L TL  + N  L  I   +F    SL+   +++N +T +   L  
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSL 184

Query: 94  WDSLEVLDIQSN 105
             SL   ++  N
Sbjct: 185 IPSLFHANVSYN 196

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
              N   L  +  ++N +L  I  + F     L+  YI+NN + +L        +L+VLD
Sbjct: 249 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307

Query: 102 IQSN 105
           +  N
Sbjct: 308 LSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           + ++  I    F     +Q LY  FN  + ++ P+ F N   L    +  N ++SLP  +
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142

Query: 92  -GDWDSLEVLDIQSN 105
             +   L  L + +N
Sbjct: 143 FHNTPKLTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 30/144 (20%)

Query: 34  ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
           EL  I  + F  +  L+ LY + N +L  +         +LK   +++N +  +      
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322

Query: 94  WDSLEVLDIQSN---------------------PWTCDCSIQWLIDYVAKRQRTDPELNY 132
           +D LE L +  N                      W C+            R    P ++ 
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF------RNVARPAVDD 376

Query: 133 N-LHCSQPVKFSNVHLLSNPLLSH 155
              HC    +  +          +
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPY 400

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
           NS +  +      +   ++ L  N   ++  I  Y+F    ++++ Y+  NAI  LP  +
Sbjct: 60  NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118

Query: 92  GDW-DSLEVLDIQSN 105
                 L VL ++ N
Sbjct: 119 FQNVPLLTVLVLERN 133

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           +  +  + F+N+  L  L    N  L+ +    F+N   L    ++NN +  +  +    
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 95  -DSLEVLDIQSN 105
             SL+ L + SN
Sbjct: 170 TTSLQNLQLSSN 181

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           L ++ +  F N   L TL  + N  L  I   +F    SL+   +++N +T +   L   
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLI 191

Query: 95  DSLEVLDIQSN 105
            SL   ++  N
Sbjct: 192 PSLFHANVSYN 202

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            ++L ++    F  L  L+ L  N N +L  I   +F+   +L+   ++ N + S+PH  
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174

Query: 92  GD-WDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQ 124
            D    L+ + +  N + C    I +L  ++ +  
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            ++L  +    F +L  L TL    N +L  +    F++   L + Y+  N + SLP   
Sbjct: 68  YNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-- 124

Query: 92  GDWDS---LEVLDIQSN 105
           G +D    L+ L + +N
Sbjct: 125 GVFDRLTKLKELRLNTN 141

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.6 bits (114), Expect = 8e-07
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
              + L+NLQ+L   +   +  + P S  N  +LK   I N+ +++L   +     LE L
Sbjct: 177 GEHQGLVNLQSLRLEWT-GIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234

Query: 101 DIQSN 105
           D++  
Sbjct: 235 DLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHELGDWDSLEV 99
               +L  L+ L       L    P  F     LK   + + + + +LP ++     LE 
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 100 LDIQSNP 106
           LD++   
Sbjct: 282 LDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
           +    L +LQ +  +    L  + P +      L+   +  N + +LP  +   + L  L
Sbjct: 98  DQAFRLSHLQHMTIDAA-GLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155

Query: 101 DIQSNP 106
            I++ P
Sbjct: 156 SIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
                  L       L    P        L+   I+   +  LP  +  +  LE L +  
Sbjct: 79  TQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136

Query: 105 N 105
           N
Sbjct: 137 N 137

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHELGDWDSLEV 99
             F     L+ L       L  + P   +    L++  +     ++ LP  +    +  +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 100 LDIQSN 105
           + +  +
Sbjct: 306 ILVPPH 311

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLD 101
           F  L  L  LY + N KL  +    F+    LKE  ++ N + S+P  + D   SL+ + 
Sbjct: 72  FDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130

Query: 102 IQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
           + +NPW C C  I +L  ++ K  + + 
Sbjct: 131 LHTNPWDCSCPRIDYLSRWLNKNSQKEQ 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
            ++ L  + N K+  I       + +L+E  + +N + S+P        SL+ + + +NP
Sbjct: 422 RIKVLDLHSN-KIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 107 WTCDCS-IQWLIDYVAKRQRTDPE 129
           W C C  I +L  ++ K  + +  
Sbjct: 480 WDCSCPRIDYLSRWLNKNSQKEQG 503

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 4/82 (4%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
            S    +       +     L  + N  LT     +  +   L+   +  N +  L    
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

Query: 92  GDWD---SLEVLDIQSNPWTCD 110
                  SL+ LDI  N  + D
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYD 389

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
           +  +   +L  L+ L  + N ++ ++    F  +  L+   +++N +  +        +L
Sbjct: 36  LWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNL 92

Query: 98  EVLDIQSNPWTC 109
           + LD+  N +  
Sbjct: 93  KHLDLSFNAFDA 104

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN-- 105
            L+ L  + N +LT + P   +    L    +  N +T LP  L    S   ++++ N  
Sbjct: 242 ELKELMVSGN-RLTSL-PMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296

Query: 106 ---PWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLS 154
                     I     Y     R D         S P +   +HL +   L 
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFD-----MAGASAPRETRALHLAAADWLV 343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
           ++ TL    N  LT + P        L+   ++ N +TSLP        L +      
Sbjct: 62  HITTLVIPDN-NLTSL-PALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
            L  L+   N +LT + P   +    L+E  +++N + SLP    +   L   + +
Sbjct: 162 ELCKLWAYNN-QLTSL-PMLPSG---LQELSVSDNQLASLPTLPSELYKLWAYNNR 212

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 33  SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL 91
                 +   +KN   L T+   FN KLT +   +       L    ++ N  +S P + 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772

Query: 92  GDWDSLEVLDIQSN 105
            +   L+   I+  
Sbjct: 773 LNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 42  TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLEV 99
            F   + L  L  ++N ++  I          ++    ++N +  +P+         +  
Sbjct: 590 AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 100 LDIQSNP 106
           +D   N 
Sbjct: 649 VDFSYNK 655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 41  NTFKNLLNLQTLYCNFNP-----KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD 95
               N   L+             ++    P       SL +  I +N I  +  +L    
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--P 827

Query: 96  SLEVLDIQSNP 106
            L +LDI  NP
Sbjct: 828 QLYILDIADNP 838

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
           +       +Q  Y  +N  L       S      L      +N +  L    G    L  
Sbjct: 542 DDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599

Query: 100 LDIQSN 105
           L +  N
Sbjct: 600 LKLDYN 605

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 12/75 (16%)

Query: 42  TFKNLLNLQTLYCNFNPKLTFIH---------PYSFNNDWSLKEFYINNNAITSLPHE-- 90
              +L  LQ+L    N +                  +    ++ FY+  N +   P    
Sbjct: 510 FLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 91  LGDWDSLEVLDIQSN 105
           L     L +LD   N
Sbjct: 569 LQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--------LGDWDS 96
             +N  T+  ++N ++       F     +    ++NN +TS+P            +   
Sbjct: 671 KGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 97  LEVLDIQSN 105
           L  +D++ N
Sbjct: 730 LTTIDLRFN 738

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKE----FYINNNAITSLPHELGDWDSLEVLDIQ 103
           +L+ L  + N  L  + P     +   +E    F    N IT +P  +   D    + ++
Sbjct: 181 SLEALDVSTN-LLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238

Query: 104 SNPWT 108
            NP +
Sbjct: 239 DNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 44  KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
           +   +L+ L  + N +LT + P        L+    +NN +T LP       SLEVL ++
Sbjct: 117 ELPASLKHLDVDNN-QLTML-PELPAL---LEYINADNNQLTMLPELPT---SLEVLSVR 168

Query: 104 SNPWTC 109
           +N  T 
Sbjct: 169 NNQLTF 174

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
            L+ +  + N +LT + P    +   L+   + NN +T LP       SLE LD+ +N
Sbjct: 141 LLEYINADNN-QLTML-PELPTS---LEVLSVRNNQLTFLPELPE---SLEALDVSTN 190

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLD 101
           F  L++L+ L+   N KLT + P        L    ++ N + S+PH   D   SL    
Sbjct: 108 FDRLVHLKELFMCCN-KLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165

Query: 102 IQSNPWTCDCS 112
           +  NPW C+C 
Sbjct: 166 LFGNPWDCECR 176

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
              L  L+ L  + N ++  +  + F  +  L+   +++N + ++        SL  LD+
Sbjct: 72  ISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDL 128

Query: 103 QSNPWTC 109
             N +  
Sbjct: 129 SFNDFDV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 38  IRKNTFKNL-LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWD 95
           +  + F+ L   ++ L  + N ++  I P    +  +L+E  + +N + S+P        
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNN-RIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

Query: 96  SLEVLDIQSNPWTCDCS-IQWLIDYVAK 122
           SL+ + +  NPW C C  I++L +++ K
Sbjct: 498 SLQYIWLHDNPWDCTCPGIRYLSEWINK 525

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
           F +L+NLQ LY N N KLT I    F+    L +  +N+N + S+P   G +D+L+ L  
Sbjct: 53  FDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR--GAFDNLKSLTH 109

Query: 102 --IQSNPWTCDCS 112
             + +NPW C+C 
Sbjct: 110 IYLYNNPWDCECR 122

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
           F  L  L  L  + N +LT +    F+    L +  +N+N + S+P   G +D+L+ L  
Sbjct: 50  FDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTH 106

Query: 102 --IQSNPWTCDCS 112
             + +NPW C CS
Sbjct: 107 IWLLNNPWDCACS 119

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD---SLEV 99
           F  L  L+ L  N N +L  +    F+    LK+  +  N + S+P   G +D   SL+ 
Sbjct: 96  FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 152

Query: 100 LDIQSNPWTCDCS 112
           + +  NPW C C 
Sbjct: 153 IWLHDNPWDCTCP 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEV 99
           N  K+L  L+ L    N +++ I     NN   L   ++NNN + +     +G   +L  
Sbjct: 259 NAVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 100 LDIQSNPWT 108
           L +  N  T
Sbjct: 316 LFLSQNHIT 324

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.8 bits (99), Expect = 7e-05
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
             NL  L +L+ N N +L            +L   +++ N IT +   L     ++  D 
Sbjct: 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADF 340

Query: 103 QSNP 106
            +  
Sbjct: 341 ANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
             NL  + +L    N  L+ + P   +N   L    +  + +  +   + +   L  L +
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSL 184

Query: 103 QSN 105
             N
Sbjct: 185 NYN 187

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
             N+  L +L    N K+T + P +  +   L    I  N I+ +   + D   L++L++
Sbjct: 217 VANMTRLNSLKIGNN-KITDLSPLANLS--QLTWLEIGTNQISDIN-AVKDLTKLKMLNV 272

Query: 103 QSN 105
            SN
Sbjct: 273 GSN 275

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
           F  L NL  L  ++N +L  +    F+    LK+  +  N + S+P   G +D L  L  
Sbjct: 153 FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 209

Query: 102 --IQSNPWTCDCS 112
             +  NPW C C 
Sbjct: 210 IWLHDNPWDCTCP 222

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
             FKN   L ++   FN KLT +   +       L    ++ N+ +  P +  +  +L+ 
Sbjct: 482 ENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

Query: 100 LDIQSN 105
             I++ 
Sbjct: 541 FGIRNQ 546

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 38  IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
           +  +  ++  +L     N +P+   I   S        +    +N IT +   +     L
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSI-KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208

Query: 98  EVLDIQSNP 106
               + ++P
Sbjct: 209 RQFYMGNSP 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEV 99
            + + +  L  L C +N +L    P +F ++  L    +  N IT +P    G  + +E 
Sbjct: 324 TSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381

Query: 100 LDIQSN 105
           L    N
Sbjct: 382 LSFAHN 387

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLE 98
             F + + L +L   +N ++T I          ++     +N +  +P+  +      + 
Sbjct: 347 PAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 99  VLDIQSNP 106
            +D   N 
Sbjct: 406 AIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 45  NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--------ELGDWDS 96
             +N+ ++  + N +++      F+    L    +  N +T +P            +   
Sbjct: 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 97  LEVLDIQSN 105
           L  +D++ N
Sbjct: 490 LTSIDLRFN 498

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
              L  + ++  ++N  +T I P        LK   I  + +      + D+  L  L  
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYA 188

Query: 103 QSNP 106
            S  
Sbjct: 189 FSQT 192

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
              L  L TL    N +++ I P +      L+  Y++ N I+ L   L    +L+VL++
Sbjct: 152 LSRLTKLDTLSLEDN-QISDIVPLAGLT--KLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207

Query: 103 QSNPWT 108
            S    
Sbjct: 208 FSQECL 213

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
              L  L TL    N +++ I P +      L+  Y++ N I+ L   L    +L+VL++
Sbjct: 149 LSRLTKLDTLSLEDN-QISDIVPLAGLT--KLQNLYLSKNHISDLR-ALAGLKNLDVLEL 204

Query: 103 QSNPWTCDC 111
            S       
Sbjct: 205 FSQECLNKP 213

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
             NL NL  L   FN  ++ I P S      L+  +  NN ++ +   L +  ++  L  
Sbjct: 305 ISNLKNLTYLTLYFN-NISDISPVSSLT--KLQRLFFYNNKVSDVS-SLANLTNINWLSA 360

Query: 103 QSNPWT 108
             N  +
Sbjct: 361 GHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 43  FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
              L NL  L  N N +L  I      +  +L +  + NN I++L   L     L  L +
Sbjct: 217 LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKL 272

Query: 103 QSN 105
            +N
Sbjct: 273 GAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
            T  +L NL  L    N +++ + P S      L E  +  N I+++   L    +L  L
Sbjct: 237 GTLASLTNLTDLDLANN-QISNLAPLSGLT--KLTELKLGANQISNIS-PLAGLTALTNL 292

Query: 101 DIQSNP 106
           ++  N 
Sbjct: 293 ELNENQ 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 44  KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
               +L+ +    N +L  +      N   L   Y +NN++  LP       SLE +   
Sbjct: 170 DLPPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAG 223

Query: 104 SN 105
           +N
Sbjct: 224 NN 225

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 41  NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLE 98
                L  L+ L  + N  L  +   +      L+E  + NN +        L     L 
Sbjct: 480 PALAALRCLEVLQASDN-ALENVDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLV 536

Query: 99  VLDIQSNP 106
           +L++Q N 
Sbjct: 537 LLNLQGNS 544

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.88
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.83
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.82
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.68
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.51
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.25
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.24
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.1
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.03
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.02
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.01
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.01
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.93
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.9
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.86
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.84
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.83
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.79
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.75
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.73
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.73
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.63
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.63
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.61
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.55
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.47
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.42
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.2
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.98
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.02
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.29
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.19
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.66
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.03
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.31
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	92.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	90.83
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	90.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	88.87

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=154.39  Aligned_cols=125  Identities=29%  Similarity=0.537  Sum_probs=111.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.|+.+++++|.++++|++|+|++| .++.+++.+|.++++|++|+|++|+++.++... ..+++|+.+++++|||.|
T Consensus        62 s~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           62 SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            899999999999999999999999999 999999999999999999999999999999876 889999999999999999


Q ss_pred             ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513        110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG  163 (209)
Q Consensus       110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~  163 (209)
                      ||++.|+..|+....    .......|+.|+.++|+.+.+++.   ....|...
T Consensus       141 ~c~l~~l~~~~~~~~----~~~~~~~C~~P~~l~g~~l~~~~~---~~~~~~~~  187 (193)
T 2wfh_A          141 DCNMQWLSDWVKSEY----KEPGIARCAGPGEMADKLLLTTPS---KKFTCAAA  187 (193)
T ss_dssp             SGGGHHHHHHHHHSS----CCCSCCBEEESGGGTTCBTTTSCG---GGCCC---
T ss_pred             CCcCHHHHHHHHhcc----CCCCCcCcCCchHHCCCCcccCCh---HHeeehhh
Confidence            999999999995432    223568999999999999999997   66666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=4.4e-22  Score=155.42  Aligned_cols=127  Identities=20%  Similarity=0.439  Sum_probs=106.9

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.|+.+++..|.++++|++|+|++| .++.+++..|.++++|+.|+|++|+++.++... ..+++|+.+++++|||.|
T Consensus        88 s~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           88 YGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            788888888888888888888888888 888888888888889999999999999988776 889999999999999999


Q ss_pred             ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCce
Q psy14513        110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL  165 (209)
Q Consensus       110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~  165 (209)
                      ||++.|+..|+.....    ......|..|..++|+.+.++..   .++.|..+..
T Consensus       167 ~c~l~~l~~~l~~~~~----~~~~~~C~~P~~l~g~~l~~l~~---~~~~c~~~~~  215 (220)
T 2v9t_B          167 DCHLKWLADYLHTNPI----ETSGARCTSPRRLANKRIGQIKS---KKFRCSAAAH  215 (220)
T ss_dssp             SGGGHHHHHHHHHCCC----BCSCCBEEESGGGTTCBGGGSCG---GGCCC-----
T ss_pred             CCccHHHHHHHHhCCC----CccCCCcCCchHHcCCchhhCCH---HHCcCccccc
Confidence            9999999999854332    23568999999999999999998   8888976543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.87  E-value=1.2e-21  Score=149.79  Aligned_cols=133  Identities=24%  Similarity=0.438  Sum_probs=115.4

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.|+.+.+.+|.++++|++|+|++| .++.+++..|.++++|++|+|++|+++++++.. ..+++|+
T Consensus        55 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  129 (192)
T 1w8a_A           55 HLVKLEL----KRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT  129 (192)
T ss_dssp             TCCEEEC----CSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred             CCCEEEC----CCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence            3445555    899999999999999999999999999 999999999999999999999999999975555 8899999


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCc
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGA  164 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~  164 (209)
                      ++++++|||.|+|++.|+..|+.....    ......|..|..++|.++.++..   +++.|..+.
T Consensus       130 ~L~L~~N~l~c~c~l~~~~~~l~~~~~----~~~~~~C~~P~~l~~~~l~~l~~---~~~~C~~~~  188 (192)
T 1w8a_A          130 SLNLASNPFNCNCHLAWFAEWLRKKSL----NGGAARCGAPSKVRDVQIKDLPH---SEFKCSSEN  188 (192)
T ss_dssp             EEECTTCCBCCSGGGHHHHHHHHHHCC----SGGGCBBCSSTTTTTSBGGGSCT---TTCCCCCC-
T ss_pred             EEEeCCCCccCcCcchHHHHHHHHcCC----CCCCCCCCCChHHcCCChhhCcH---hhcCcCCCC
Confidence            999999999999999999999954432    23467899999999999999998   888897654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=4.4e-22  Score=175.55  Aligned_cols=126  Identities=18%  Similarity=0.337  Sum_probs=111.9

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC-CCcc
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW-DSLE   98 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l-~~L~   98 (209)
                      +..|++    ++|+|+.+++.+|.++++|++|+|++| +++.+++.+|.++++|++|+|++|++++++++. ..+ ++|+
T Consensus       496 L~~L~L----s~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~  570 (635)
T 4g8a_A          496 LTFLDL----SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  570 (635)
T ss_dssp             CCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred             cCEEEC----CCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence            344555    899999999999999999999999999 999999999999999999999999999987766 666 6899


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      .|++++|||.|||++.||.+|++..... ..+...+.|++|+.++|+++.+++.
T Consensus       571 ~L~L~~Np~~C~C~~~~~~~wl~~~~~~-~~~~~~~~C~~P~~~~g~~l~~~~~  623 (635)
T 4g8a_A          571 FLNLTQNDFACTCEHQSFLQWIKDQRQL-LVEVERMECATPSDKQGMPVLSLNI  623 (635)
T ss_dssp             EEECTTCCBCCSGGGHHHHHHHHHTTTT-BSCGGGCBBCSSTTTTTCBGGGCCC
T ss_pred             EEEeeCCCCcccCCcHHHHHHHHhCCCc-cCCCCCceeCCchHHCCCEeeeecc
Confidence            9999999999999999999999554433 3455789999999999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=147.23  Aligned_cols=142  Identities=22%  Similarity=0.359  Sum_probs=114.5

Q ss_pred             ccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513         13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-   91 (209)
Q Consensus        13 ~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-   91 (209)
                      ++...+..+..|..+ ++++|.|+.+++..|.++++|++|+|++| .++.+.+..|.++++|+.|+|++|+++++++.. 
T Consensus        72 i~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           72 IEEGAFEGASGVNEI-LLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             ECTTTTTTCTTCCEE-ECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             ECHHHhCCCCCCCEE-ECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence            333344443333332 33789999999989999999999999999 999999999999999999999999999986555 


Q ss_pred             CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513         92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG  163 (209)
Q Consensus        92 ~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~  163 (209)
                      ..+++|+.+++++|||.|+|++.|+..|+......    .....|..|..++|.++.++..   .+..|..+
T Consensus       150 ~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~----~~~~~C~~P~~l~g~~l~~l~~---~~~~~~~~  214 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIV----TGNPRCQKPYFLKEIPIQDVAI---QDFTCDDA  214 (220)
T ss_dssp             TTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCB----CCCCEEEESGGGTTEEGGGSCG---GGCCCCC-
T ss_pred             cCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCcc----ccCCccCCChHHCCCChhhCCH---HHcccccc
Confidence            88999999999999999999999999999543322    3456999999999999999987   66667544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.84  E-value=2.8e-20  Score=139.66  Aligned_cols=136  Identities=22%  Similarity=0.337  Sum_probs=112.8

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA   83 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~   83 (209)
                      ++....|..++    .++..|.+    ++|.|+.+++..|.++++|++|+|++| .++.++++.|.++++|++|+|++|+
T Consensus        19 n~l~~ip~~~~----~~l~~L~L----~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           19 KSLASVPTGIP----TTTQVLYL----YDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             SCCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCccCccCC----CCCcEEEc----CCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence            34445555554    45566887    999999999999999999999999999 9999999999999999999999999


Q ss_pred             CcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCCC----CCCCccccCCCCCCCCcccccCCC
Q psy14513         84 ITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDP----ELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus        84 l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~----~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      ++++++.. ..+++|+.|++++|||.|+|+ +.|+..|+........    .+...+.|..+    |.++..+..
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~  160 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTE  160 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCS
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhccc
Confidence            99999876 899999999999999999996 9999999944333321    34567889874    677777764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.83  E-value=3.4e-20  Score=158.32  Aligned_cols=137  Identities=26%  Similarity=0.490  Sum_probs=116.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.|+.+++..|.++++|+.|++++| .++.+++.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus       208 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          208 KLDELDL----SGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             SCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             ccCEEEC----CCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            3445555    899999999999999999999999999 999999999999999999999999999999887 8899999


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCcee
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALV  166 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~~  166 (209)
                      .+++++|||.|||++.|+..|+++....  .......|.+|+.++|+.+..++.   ....|..+...
T Consensus       283 ~L~L~~Np~~CdC~l~~l~~~~~~~~~~--~~~~~~~C~~P~~l~g~~l~~l~~---~~~~C~~P~i~  345 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDILWLSWWIKDMAPS--NTACCARCNTPPNLKGRYIGELDQ---NYFTCYAPVIV  345 (440)
T ss_dssp             EEECCSSCEECSSTTHHHHHHHHTTSCS--SCSCCCBEEESTTTTTCBCC-------CCSCCCCCCEE
T ss_pred             EEEcCCCCccCCCCchHHHHHHHhcccc--CCccccCCCChhHhcCccHhHhhh---hhccCCCCccc
Confidence            9999999999999999999999543322  334568999999999999999887   77889766543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.82  E-value=1.3e-19  Score=155.23  Aligned_cols=135  Identities=25%  Similarity=0.475  Sum_probs=117.8

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.+..+++..|.++++|+.|++++| .++.+.+.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus       219 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  293 (452)
T 3zyi_A          219 GLEELEM----SGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV  293 (452)
T ss_dssp             TCCEEEC----TTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred             cccEEEC----cCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence            3445555    899999999999999999999999999 999999999999999999999999999999887 8899999


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCc
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGA  164 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~  164 (209)
                      .+++++|||.|||++.|+..|++.....  .......|..|..++|+.+..++.   ....|..|.
T Consensus       294 ~L~L~~Np~~CdC~~~~l~~~l~~~~~~--~~~~~~~C~~P~~l~g~~l~~~~~---~~~~C~~P~  354 (452)
T 3zyi_A          294 ELHLHHNPWNCDCDILWLAWWLREYIPT--NSTCCGRCHAPMHMRGRYLVEVDQ---ASFQCSAPF  354 (452)
T ss_dssp             EEECCSSCEECSTTTHHHHHHHHHHC-----CCSSCBEEESTTTTTCBTTSCCG---GGCCCCCCC
T ss_pred             EEEccCCCcCCCCCchHHHHHHHHhCcc--CCccCcEeCCchHhccchhhccch---hhhcccCcc
Confidence            9999999999999999999999544322  233567999999999999999887   778897653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.81  E-value=3.4e-19  Score=134.30  Aligned_cols=137  Identities=26%  Similarity=0.420  Sum_probs=111.0

Q ss_pred             CCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513          3 SKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN   82 (209)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N   82 (209)
                      .++....|..++    .++..|.+    ++|.|+.+++..|.++++|++|+|++| .++.+++..|..+++|+.|+|++|
T Consensus        21 ~n~l~~iP~~~~----~~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           21 NIRLASVPAGIP----TDKQRLWL----NNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSCCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCccCCCcC----CCCcEEEe----CCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            344455555554    45566888    999999999999999999999999999 999999999999999999999999


Q ss_pred             cCcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCC-------CCCCCccccCCCCCCCCcccccCCC
Q psy14513         83 AITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTD-------PELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus        83 ~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~-------~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +++.++... ..+++|+.+++++|||.|+|. +.|+..|+.......       ..+...+.|..    .|.++..+..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~~~~~~~~~~  166 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAG----TNTPVRAVTE  166 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTT----TCCBGGGCCG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECC----CCccceeccc
Confidence            999999885 889999999999999999996 899999994332221       11445677876    3566666653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=165.67  Aligned_cols=135  Identities=24%  Similarity=0.357  Sum_probs=103.7

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      +..+..|..| ++++|.++.+++..|.++++|+.|+|++| .++.+++..|.  ++|+.|++++|+++++++..  +.+|
T Consensus       476 ~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          476 FEGLSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SSCBCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hcCcccccEE-ECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            3333333332 33788888888888888888888888888 88888887776  67888888888888866544  4588


Q ss_pred             cEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513         98 EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG  163 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~  163 (209)
                      +.+++++|||.|+|++.||..|+.............+.|.+|+.++|.++..+..     ..|...
T Consensus       550 ~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~-----~~C~~~  610 (844)
T 3j0a_A          550 SVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST-----EGCDEE  610 (844)
T ss_dssp             CEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCC-----CCC---
T ss_pred             CEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCcc-----ccCCch
Confidence            9999999999999999999999965555545666788999999999999988864     468644

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.78  E-value=3e-18  Score=141.76  Aligned_cols=127  Identities=19%  Similarity=0.338  Sum_probs=104.8

Q ss_pred             CCCCcccccCCcccccceecccccccc-ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          6 NSGSRQDISYDTQYTIMKVQLPYSTAN-SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~L~ll~~~s~-n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      ....|. ++..+  +|..|.+    ++ |.|+.++++.|.+|++|+.|+|++| .|+.+++.+|.++++|+.|+|++|+|
T Consensus        21 l~~ip~-l~~~~--~L~~L~l----~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           21 LDSLHH-LPGAE--NLTELYI----ENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CTTTTT-SCSCS--CCSEEEC----CSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCccCC-CCCCC--CeeEEEc----cCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            444444 44433  3556666    85 9999999999999999999999999 99999999999999999999999999


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCC
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFS  143 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~  143 (209)
                      +++|+.. ..++ |+.|++.+|+|.|+|++.|+..|+......  .+...+.|..|..++
T Consensus        93 ~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~--l~~~~~~C~~~~~l~  149 (347)
T 2ifg_A           93 ESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGG--VPEQKLQCHGQGPLA  149 (347)
T ss_dssp             SCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSS--CGGGCCCCSSSSCSS
T ss_pred             ceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCccc--ccccCCCCCCChHHh
Confidence            9999887 5555 999999999999999999999998443322  234678998877433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=1.2e-17  Score=135.42  Aligned_cols=91  Identities=20%  Similarity=0.349  Sum_probs=76.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      ++|.|+.++++.|..+++|+.|++++| .++.++++.|..+++|+.|++++|+++.+|..+.....|+.+++++|||.|+
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            677888888777777888888888888 8888888777778888888888888888887776667899999999999999


Q ss_pred             cCcHhHHHHHHh
Q psy14513        111 CSIQWLIDYVAK  122 (209)
Q Consensus       111 C~~~~~~~~~~~  122 (209)
                      |++.|+..|+.+
T Consensus       211 c~~~~l~~wl~~  222 (290)
T 1p9a_G          211 CEILYFRRWLQD  222 (290)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             CccHHHHHHHHh
Confidence            999999999943

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.74  E-value=3.6e-17  Score=130.93  Aligned_cols=134  Identities=22%  Similarity=0.433  Sum_probs=105.3

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|+
T Consensus       134 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (270)
T 2o6q_A          134 KLTYLSL----GYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK  208 (270)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEEC----CCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence            3444555    788899888888899999999999999 999999988988999999999999999998876 8899999


Q ss_pred             EEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513         99 VLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG  163 (209)
Q Consensus        99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~  163 (209)
                      .+++++|||.|+|+ ..|+..|+...............|..    .|+.+.++.. ......|..|
T Consensus       209 ~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~-~~~~~~C~~p  269 (270)
T 2o6q_A          209 MLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITE-KDAASDCVSP  269 (270)
T ss_dssp             EEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCT-TTTCSCCCSC
T ss_pred             EEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecc-hhhcccCCCC
Confidence            99999999999998 78999998433322233446678865    5777777775 1112467544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.72  E-value=1.3e-17  Score=134.36  Aligned_cols=117  Identities=24%  Similarity=0.497  Sum_probs=99.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.++.+++..|.++++|++|++++| .+..+.+..|..+++|+.|++++|+++.++... ..+++|+.+++++|||.|
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            778888888888888888888888888 888888888888888899999999888887665 888999999999999999


Q ss_pred             ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513        110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus       110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +|+..|+..|++....    ....+.|..|+.++|..+..+..
T Consensus       240 ~~~~~~~~~~l~~~~~----~~~~~~c~~p~~l~g~~l~~l~~  278 (285)
T 1ozn_A          240 DCRARPLWAWLQKFRG----SSSEVPCSLPQRLAGRDLKRLAA  278 (285)
T ss_dssp             SGGGHHHHHHHHHCCS----EECCCBEEESGGGTTCBGGGSCG
T ss_pred             CCCcHHHHHHHHhccc----ccCccccCCchHhCCcChhhcCH
Confidence            9999999999955432    34568999999999999999886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=1.6e-17  Score=135.05  Aligned_cols=127  Identities=18%  Similarity=0.335  Sum_probs=108.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC-CCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW-DSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l-~~L   97 (209)
                      ++..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++..++.. ..+ ++|
T Consensus       176 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  250 (306)
T 2z66_A          176 NLTFLDL----SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL  250 (306)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred             CCCEEEC----CCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence            3444555    889999999999999999999999999 999999988988999999999999999865554 667 499


Q ss_pred             cEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513         98 EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +.+++++|+|.|+|+..|+..|+++.... ......+.|..|+.++|.++.+++.
T Consensus       251 ~~L~L~~N~~~~~c~~~~~~~~l~~~~~~-~~~~~~~~C~~p~~~~g~~~~~~~~  304 (306)
T 2z66_A          251 AFLNLTQNDFACTCEHQSFLQWIKDQRQL-LVEVERMECATPSDKQGMPVLSLNI  304 (306)
T ss_dssp             CEEECTTCCEECSGGGHHHHHHHHHTGGG-BSCGGGCBEEESGGGTTCBGGGCCC
T ss_pred             CEEEccCCCeecccChHHHHHHHHhhhhh-hccccccccCCchhhCCceeeeecC
Confidence            99999999999999999999999543332 3345789999999999999988864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=4.4e-19  Score=158.62  Aligned_cols=121  Identities=26%  Similarity=0.529  Sum_probs=78.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-C-CCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-G-DWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~-~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.++++.|.++++|+.|++++| .++.+++..|.++++|+.|++++|+++++++.. . .+++|+.+++++|||.
T Consensus       544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~  622 (680)
T 1ziw_A          544 ESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD  622 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred             CCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence            778888888888888888888888888 888888888888888888888888888877665 4 6789999999999999


Q ss_pred             cccCc-HhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513        109 CDCSI-QWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus       109 C~C~~-~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      |||++ .||..|+.............+.|.+|+.++|+++.++++
T Consensus       623 c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  667 (680)
T 1ziw_A          623 CTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDT  667 (680)
T ss_dssp             BCCCCCSSEECCSSCC-----------------------------
T ss_pred             cCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccCh
Confidence            99996 999999843333322334678999999999999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.72  E-value=5.1e-18  Score=149.74  Aligned_cols=127  Identities=22%  Similarity=0.343  Sum_probs=97.7

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCC-Ccc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD-SLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~   98 (209)
                      +|..|.+    ++|.++.+++..|.++++|++|++++| .++.+.+..|.++++|+.|++++|+++.+|..+..++ +|+
T Consensus       474 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          474 NLTFLDL----SKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA  548 (606)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred             CCCEEEC----CCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence            4455555    899999999999999999999999999 9999999999999999999999999999998886666 699


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      .+++++|||.|+|++.|+..|+...... +.+...+.|..|+.++|.++.++..
T Consensus       549 ~l~l~~N~~~c~c~~~~~~~~l~~~~~~-~~~~~~~~C~~p~~~~~~~l~~~~~  601 (606)
T 3vq2_A          549 FFNLTNNSVACICEHQKFLQWVKEQKQF-LVNVEQMTCATPVEMNTSLVLDFNN  601 (606)
T ss_dssp             EEECCSCCCCCSSTTHHHHTTTTTSSSS-BSSGGGCCCC---------------
T ss_pred             EEEccCCCcccCCccHHHHHHHHcCccc-ccCCccceeCCChHhCCCEeeeccc
Confidence            9999999999999999999998443333 4456789999999999999999974

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=1.1e-16  Score=126.85  Aligned_cols=98  Identities=23%  Similarity=0.455  Sum_probs=86.8

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.|+.+++..|.++++|++|+|++| .++.+++..|..+++|++|+|++|+++.+++.. ..+++|+
T Consensus       108 ~L~~L~L----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          108 QLDKLYL----GGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEEc----CCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence            3444555    888999999888889999999999999 999999988988999999999999999988766 8899999


Q ss_pred             EEEeeCCCCccc-cCcHhHHHHHHh
Q psy14513         99 VLDIQSNPWTCD-CSIQWLIDYVAK  122 (209)
Q Consensus        99 ~l~l~~Np~~C~-C~~~~~~~~~~~  122 (209)
                      .+++++|+|.|+ |++.|+..|+..
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~  207 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRE  207 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred             EEEeeCCceeCCccccHHHHHHHHh
Confidence            999999999999 999999999943

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=2e-16  Score=123.97  Aligned_cols=116  Identities=23%  Similarity=0.407  Sum_probs=79.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.|+.+++..|..+++|++|++++| .++.++.. +..+++|++|+|++|+++.++... ..+++|+.+++.+|||.|
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            555555555555555555666666666 55555433 344667777777777777777665 778999999999999999


Q ss_pred             ccC-cHhHHHHHHhcCCC-------CCCCCCccccCCCCCCCCcccccCCC
Q psy14513        110 DCS-IQWLIDYVAKRQRT-------DPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus       110 ~C~-~~~~~~~~~~~~~~-------~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +|. +.|+..|+......       .+.+.....|..+    |.++..+..
T Consensus       174 ~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~  220 (229)
T 3e6j_A          174 ECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTE  220 (229)
T ss_dssp             TBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCG
T ss_pred             CcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceeccc
Confidence            996 89999999432221       1245567889874    566776664

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.68  E-value=5.5e-17  Score=116.57  Aligned_cols=102  Identities=23%  Similarity=0.344  Sum_probs=85.0

Q ss_pred             ceeccccccccc--ccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCC
Q psy14513         50 QTLYCNFNPKLT--FIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRT  126 (209)
Q Consensus        50 ~~L~Ls~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~  126 (209)
                      ..++.+++ .++  .++.+.   ..+++.|+|++|+|++++.+. ..+++|+.|+|++|||.|||++.||..|+......
T Consensus        11 ~~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~   86 (130)
T 3rfe_A           11 TLVDCGRR-GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER   86 (130)
T ss_dssp             TEEECCSS-CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS
T ss_pred             CEEEeCCC-CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc
Confidence            36788888 888  777653   346999999999999999988 88999999999999999999999999999544332


Q ss_pred             CCCCCCccccCCCCCCCCcccccCCCCCcccCcc
Q psy14513        127 DPELNYNLHCSQPVKFSNVHLLSNPLLSHISGEC  160 (209)
Q Consensus       127 ~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C  160 (209)
                        .....+.|.+|..++|+.+.++..   .++.|
T Consensus        87 --~~~~~~~C~~P~~l~g~~l~~l~~---~~l~c  115 (130)
T 3rfe_A           87 --APYRDLRCVAPPALRGRLLPYLAE---DELRA  115 (130)
T ss_dssp             --GGGTTCBCCBSTTTTTCBGGGCCH---HHHHH
T ss_pred             --ccccCcEeCcChHHcCCCcccCCH---HHhhC
Confidence              124578999999999999999986   66664

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.68  E-value=3.2e-16  Score=117.68  Aligned_cols=112  Identities=26%  Similarity=0.528  Sum_probs=95.4

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L   97 (209)
                      .++..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|
T Consensus        52 ~~L~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           52 TQLTKLSL----SQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             ccccEEEC----CCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence            34455665    889999999999999999999999999 999999998888999999999999999998887 889999


Q ss_pred             cEEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCC
Q psy14513         98 EVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQ  138 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~  138 (209)
                      +++++++|+|.|+|+ +.|+..|+.+.....   .....|..
T Consensus       127 ~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~---~~~~~C~~  165 (177)
T 2o6r_A          127 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE---QGSAKCSG  165 (177)
T ss_dssp             CEEECCSSCBCCCHHHHHHHHHHHHHTGGGE---ESCCBBTT
T ss_pred             CEEEecCCCeeccCccHHHHHHHHhhCcccc---ccCcEeCC
Confidence            999999999999998 788999984443321   25678876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.67  E-value=2e-17  Score=145.96  Aligned_cols=119  Identities=18%  Similarity=0.300  Sum_probs=100.1

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.++.+++..|.++++|++|++++| .++.+.+..|..+..| .|++++|+++.+++.. ..+++|+.+++++|||.|
T Consensus       484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            778888888888888888888888888 8888888888888888 8888888888877665 778899999999999999


Q ss_pred             ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513        110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus       110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +|+..|+..|+...... ......+.|.+|+.++|+++.+++.
T Consensus       562 ~c~~~~~~~w~~~~~~~-~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          562 TCSNIYFLEWYKENMQK-LEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             SGGGHHHHHHHHHCGGG-EECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             cCCcHHHHHHHHhCccc-ccCCCCCeeCCchHhCCCeeeeeec
Confidence            99999999999543332 3455779999999999999999874

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.67  E-value=5.8e-17  Score=139.31  Aligned_cols=135  Identities=21%  Similarity=0.330  Sum_probs=110.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.++.+++..|.++++|++|+|++| .++.+.+.+|.++++|+.|++++|+++.++... ..+++|+
T Consensus       249 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  323 (477)
T 2id5_A          249 YLRFLNL----SYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE  323 (477)
T ss_dssp             TCCEEEC----CSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred             ccCeeEC----CCCcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence            3445555    889999999999999999999999999 999999999999999999999999999998877 8899999


Q ss_pred             EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC-CCcccCccCCC
Q psy14513         99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL-LSHISGECVKG  163 (209)
Q Consensus        99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~-~~~~~~~C~~~  163 (209)
                      .+++++|||.|||.+.|+..|..    ..........|..|..++|..+.++.. +-.+...|..+
T Consensus       324 ~L~l~~N~l~c~c~~~~~~~~~~----~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P  385 (477)
T 2id5_A          324 TLILDSNPLACDCRLLWVFRRRW----RLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRA  385 (477)
T ss_dssp             EEECCSSCEECSGGGHHHHTTTT----SSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEE
T ss_pred             EEEccCCCccCccchHhHHhhhh----ccccCccCceeCCchHHcCCchhhCccccccceeEeccc
Confidence            99999999999999999887641    112334568999999999999987753 00124567543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=2.1e-16  Score=131.69  Aligned_cols=131  Identities=21%  Similarity=0.385  Sum_probs=86.2

Q ss_pred             cccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC
Q psy14513         12 DISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL   91 (209)
Q Consensus        12 ~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~   91 (209)
                      .++...+.++..|..| ++++|.|+.+++..|.++++|+.|+|++| .+..+++..|.++++|+.|+|++|+++.+|...
T Consensus        78 ~i~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           78 FISSEAFVPVPNLRYL-DLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             EECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             ccChhhccCCCCCCEE-ECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            3443344433333332 22678888887777888888888888888 788887777777777788888877777766543


Q ss_pred             ----CCCCCc--------------------------cEEEeeCCCCccccCcHhH-HHHHHhcCCCCCCCCCccccCCCC
Q psy14513         92 ----GDWDSL--------------------------EVLDIQSNPWTCDCSIQWL-IDYVAKRQRTDPELNYNLHCSQPV  140 (209)
Q Consensus        92 ----~~l~~L--------------------------~~l~l~~Np~~C~C~~~~~-~~~~~~~~~~~~~~~~~~~C~~p~  140 (209)
                          ..+++|                          +.+++++|||.|||++.|+ ..|..............+.|..|.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~  235 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSK  235 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSS
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCCh
Confidence                123332                          5578899999999999986 567733222212234568999887


Q ss_pred             CCCC
Q psy14513        141 KFSN  144 (209)
Q Consensus       141 ~l~g  144 (209)
                      .+.+
T Consensus       236 ~~~~  239 (361)
T 2xot_A          236 KLHN  239 (361)
T ss_dssp             CCEE
T ss_pred             HHcC
Confidence            6543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=1.4e-14  Score=123.35  Aligned_cols=112  Identities=27%  Similarity=0.502  Sum_probs=95.7

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.+..+++..|.++++|++|++++| .++.+.+..|.++++|++|++++|+++.+|... ..+++|+
T Consensus       324 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          324 HLLKLNL----SQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TCCEEEC----CSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             cCCEEEC----CCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            3444555    889999999999999999999999999 999999999999999999999999999998877 8999999


Q ss_pred             EEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513         99 VLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP  139 (209)
Q Consensus        99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p  139 (209)
                      .+++++|||.|+|+ ..|+..|+......   ......|..+
T Consensus       399 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~---~~~~~~c~~~  437 (455)
T 3v47_A          399 KIWLHTNPWDCSCPRIDYLSRWLNKNSQK---EQGSAKCSGS  437 (455)
T ss_dssp             EEECCSSCBCCCTTTTHHHHHHHHHTTTT---EESCCBBTTT
T ss_pred             EEEccCCCcccCCCcchHHHHHHHhCccc---eeeeeeecCC
Confidence            99999999999998 78999999443332   2345688764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.57  E-value=1.2e-14  Score=127.37  Aligned_cols=99  Identities=20%  Similarity=0.308  Sum_probs=81.6

Q ss_pred             cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHH-HHHhcC
Q psy14513         47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLID-YVAKRQ  124 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~-~~~~~~  124 (209)
                      ++|+.|++++| .++.+++..| ++++|+.|++++|+++++|... ..+++|+.+++++|||.|+|++.|+.. |.....
T Consensus       450 ~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~  527 (562)
T 3a79_B          450 PKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS  527 (562)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTT
T ss_pred             CcCCEEECCCC-cCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcC
Confidence            57888888888 8888888887 6899999999999999999984 889999999999999999999999976 874443


Q ss_pred             CCCC-----CCCCccccCCCCCCCCcccccCC
Q psy14513        125 RTDP-----ELNYNLHCSQPVKFSNVHLLSNP  151 (209)
Q Consensus       125 ~~~~-----~~~~~~~C~~p~~l~g~~l~~~~  151 (209)
                      ....     .....+.|..    +|+++.++.
T Consensus       528 ~~~~~~~~~~~~~~~~C~~----~g~~l~~~~  555 (562)
T 3a79_B          528 GVVRNSAGSVAPDSAKCSG----SGKPVRSII  555 (562)
T ss_dssp             TTEECSSSSBCSSSSCBSS----SCCCTTTCC
T ss_pred             CcccccccCCCCCCCccCC----CCcEeeeec
Confidence            3322     3456788977    777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=1.3e-13  Score=105.87  Aligned_cols=100  Identities=25%  Similarity=0.524  Sum_probs=85.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|+
T Consensus        77 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~  151 (208)
T 2o6s_A           77 SLTYLNL----STNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  151 (208)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CcCEEEC----CCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence            3445555    788999888888888999999999999 999998888888899999999999999988876 8899999


Q ss_pred             EEEeeCCCCccccC-cHhHHHHHHhcC
Q psy14513         99 VLDIQSNPWTCDCS-IQWLIDYVAKRQ  124 (209)
Q Consensus        99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~  124 (209)
                      .+++++|+|.|+|+ +.++..|..+..
T Consensus       152 ~L~l~~N~~~~~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          152 YIWLHDNPWDCTCPGIRYLSEWINKHS  178 (208)
T ss_dssp             EEECCSCCBCCCTTTTHHHHHHHHHCT
T ss_pred             EEEecCCCeecCCCCHHHHHHHHHhCC
Confidence            99999999999997 677777764433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.51  E-value=6.4e-14  Score=121.46  Aligned_cols=103  Identities=19%  Similarity=0.302  Sum_probs=81.5

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.++...+..+.  ++|+.|++++| .++.+++..+ .+++|++|++++|+++.+|... ..+++|+.+++++|||.|
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            55655543333322  57888888888 8888877777 6899999999999999999885 889999999999999999


Q ss_pred             ccCcHhH-HHHHHhcCCCCCCCCCccccCCCC
Q psy14513        110 DCSIQWL-IDYVAKRQRTDPELNYNLHCSQPV  140 (209)
Q Consensus       110 ~C~~~~~-~~~~~~~~~~~~~~~~~~~C~~p~  140 (209)
                      +|++.|+ ..|+.+....   ....+.|..|.
T Consensus       483 ~c~~~~~~~~~~~~~~~~---~~~~~~C~~p~  511 (520)
T 2z7x_B          483 SCPRIDYLSRWLNKNSQK---EQGSAKCSGSG  511 (520)
T ss_dssp             CHHHHHHHHHHHHHTTTT---EESCCBBTTTC
T ss_pred             cCCchHHHHHHHHhcccc---CCCCCCcCCcc
Confidence            9999999 8998544332   34678999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=1.1e-13  Score=110.74  Aligned_cols=104  Identities=25%  Similarity=0.552  Sum_probs=76.7

Q ss_pred             ccccccccCchhhcCCcccc----eecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQ----TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~----~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      ++|.++.+++..|..+.+|+    .|++++| .++.+++..|.. .+|+.|++++|+++.++... ..+++|+.+++++|
T Consensus       157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            55666665555555555555    5566666 666666666653 47999999999999998887 88999999999999


Q ss_pred             CCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513        106 PWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP  139 (209)
Q Consensus       106 p~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p  139 (209)
                      ||.|+|+ +.|+..|+......   ......|..|
T Consensus       235 ~~~c~c~~l~~l~~~~~~~~~~---~~~~~~C~~~  266 (276)
T 2z62_A          235 PWDCSCPRIDYLSRWLNKNSQK---EQGSAKCSGS  266 (276)
T ss_dssp             CBCCCTTTTHHHHHHHHHTGGG---BCSCCBBTTT
T ss_pred             cccccCCchHHHHHHHHhcccc---cCCCceeeCC
Confidence            9999997 78899998443332   2345689875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=4.2e-13  Score=107.34  Aligned_cols=97  Identities=27%  Similarity=0.558  Sum_probs=83.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +|..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.+++.. ..+++|+
T Consensus       134 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          134 NLTYLNL----AHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEEC----CCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence            3444555    788999988888888999999999999 999888888888899999999999999988776 8899999


Q ss_pred             EEEeeCCCCccccC-cHhHHHHHH
Q psy14513         99 VLDIQSNPWTCDCS-IQWLIDYVA  121 (209)
Q Consensus        99 ~l~l~~Np~~C~C~-~~~~~~~~~  121 (209)
                      .+++++|||.|+|+ +.++..|..
T Consensus       209 ~L~l~~N~~~~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          209 YIWLHDNPWDCTCPGIRYLSEWIN  232 (272)
T ss_dssp             EEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             EEEccCCCccccCcHHHHHHHHHH
Confidence            99999999999997 677776763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.47  E-value=1.5e-13  Score=120.05  Aligned_cols=112  Identities=22%  Similarity=0.422  Sum_probs=91.5

Q ss_pred             ccceecccccccccccc-ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513         20 TIMKVQLPYSTANSELY-AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~-~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L   97 (209)
                      ++..|.+    ++|.+. ...+..|.++++|++|++++| .++.+.+..|..+++|+.|++++|+++.+++.. ..+++|
T Consensus       446 ~L~~L~l----~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  520 (570)
T 2z63_A          446 SLEVLKM----AGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL  520 (570)
T ss_dssp             TCCEEEC----TTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCcEEEC----cCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence            3444555    788887 344578888999999999999 999999999999999999999999999988776 899999


Q ss_pred             cEEEeeCCCCccccCcHhHH-HHHHhcCCCCCCCCCccccCCC
Q psy14513         98 EVLDIQSNPWTCDCSIQWLI-DYVAKRQRTDPELNYNLHCSQP  139 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~~~~~~-~~~~~~~~~~~~~~~~~~C~~p  139 (209)
                      +.+++++|||.|+|+..|+. .|+.......... .  .|.+|
T Consensus       521 ~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~-~--~C~~~  560 (570)
T 2z63_A          521 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-A--KCSGS  560 (570)
T ss_dssp             CEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESC-C--BBTTT
T ss_pred             cEEEecCCcccCCCcchHHHHHHHHhccccCCCc-h--hhCCC
Confidence            99999999999999998888 9995443332222 2  99886

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.43  E-value=4.5e-13  Score=116.69  Aligned_cols=99  Identities=28%  Similarity=0.439  Sum_probs=81.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|+++.++    .++++|++|++++| +++.++...  .+++|+.|++++|+++.+++.. ..+++|+.+++++|||.|
T Consensus       439 s~N~l~~~~----~~l~~L~~L~Ls~N-~l~~ip~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          439 SNNNLDSFS----LFLPRLQELYISRN-KLKTLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             CSSCCSCCC----CCCTTCCEEECCSS-CCSSCCCGG--GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             CCCChhhhc----ccCChhcEEECCCC-ccCcCCCcc--cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            566665543    36889999999999 999988754  4789999999999999988876 889999999999999999


Q ss_pred             ccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513        110 DCS-IQWLIDYVAKRQRTDPELNYNLHCSQP  139 (209)
Q Consensus       110 ~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p  139 (209)
                      +|+ ..|+..|++.....   ......|..|
T Consensus       512 ~~~~~~~l~~~l~~~~~~---~~~~~~C~~~  539 (549)
T 2z81_A          512 SCPRIDYLSRWLNKNSQK---EQGSAKCSGS  539 (549)
T ss_dssp             CHHHHHHHHHHHHHCTTT---EESCCBBTTT
T ss_pred             CCccHHHHHHHHHhcccc---cCCCCeECCC
Confidence            999 67888899544332   3456899875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.8e-13  Score=113.25  Aligned_cols=69  Identities=26%  Similarity=0.579  Sum_probs=58.2

Q ss_pred             cCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513         68 FNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP  139 (209)
Q Consensus        68 f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p  139 (209)
                      +..+++|+.|++++|+++.+|... ..+++|+.+++++|||.|+|+ +.|+..|..+.....   ...+.|+.|
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~---~~~~~C~~p  343 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE---QGSAKCSGS  343 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE---ESCCBBTTT
T ss_pred             HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC---CCCcccCCC
Confidence            345678999999999999999987 899999999999999999997 899999985544432   356899886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.38  E-value=6.1e-13  Score=117.07  Aligned_cols=95  Identities=17%  Similarity=0.181  Sum_probs=63.2

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +.+.-|+.+|.+..    .|++    ++|+|+.+++.+|.++++|++|+|++| .|+.+++++|.++++|++|+|++|++
T Consensus        42 ~l~~vP~~lp~~~~----~LdL----s~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           42 NFYKIPDNLPFSTK----NLDL----SFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             CCSSCCSSSCTTCC----EEEC----TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CcCccCCCCCcCCC----EEEe----eCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC
Confidence            44566666665433    3666    677777777777777777777777777 77777777777777777777777777


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      +.+|+.. ..+++|++|++++|.+.
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~  137 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLA  137 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCC
Confidence            7666554 66666666666666553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=4.2e-12  Score=96.74  Aligned_cols=95  Identities=16%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +....|..++    .++..|.+    ++|.|+.++ ..|.++++|+.|+|++| .++.+++.+|.++++|+.|+|++|++
T Consensus        21 ~l~~ip~~~~----~~l~~L~L----~~n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           21 GLKVLPKGIP----RDVTELYL----DGNQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             CCSSCCSCCC----TTCCEEEC----CSSCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcCCCCCC----CCCCEEEC----CCCcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence            3344444444    45667888    999999988 78999999999999999 99999999999999999999999999


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      +.+++.. ..+++|+.|++++|.+..
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~  116 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISV  116 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCe
Confidence            9998876 899999999999999874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=3.2e-12  Score=99.32  Aligned_cols=96  Identities=23%  Similarity=0.345  Sum_probs=74.9

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +....|..++    .++..|.+    ++|.|+.+++..|.++++|+.|+|++| .++.+.+.+|.++++|++|+|++|++
T Consensus        22 ~l~~iP~~l~----~~l~~L~l----~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           22 GLTEIPTNLP----ETITEIRL----EQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             CCSSCCSSCC----TTCCEEEC----CSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CcCcCCCccC----cCCCEEEC----CCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            3444455444    34555777    888888888888888888888888888 88888888888888888888888888


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      +.+|... ..+++|+.|++++|.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCE
Confidence            8888776 778888888888887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=5.4e-12  Score=95.95  Aligned_cols=98  Identities=23%  Similarity=0.346  Sum_probs=84.2

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCch-hhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKN-TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN   82 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~-~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N   82 (209)
                      ++....|..++.    ++..|.+    ++|.|+.+++. .|..+++|++|+|++| .++.+.+.+|.++++|+.|+|++|
T Consensus        18 ~~l~~ip~~~~~----~l~~L~l----~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           18 RGLKEIPRDIPL----HTTELLL----NDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             SCCSSCCSCCCT----TCSEEEC----CSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCcCcCccCCCC----CCCEEEC----CCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence            344444544443    5667888    99999999875 6999999999999999 999999999999999999999999


Q ss_pred             cCcccCCCC-CCCCCccEEEeeCCCCccc
Q psy14513         83 AITSLPHEL-GDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        83 ~l~~l~~~~-~~l~~L~~l~l~~Np~~C~  110 (209)
                      +++.+++.. ..+++|++|++++|.+...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            999988775 8899999999999998753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=7.6e-12  Score=97.70  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=63.6

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +....|..++    .++..|.+    ++|.|+.+++..|.++++|++|+|++| .++.+++..|.++++|+.|+|++|++
T Consensus        30 ~l~~ip~~~~----~~L~~L~L----s~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           30 RHASVPAGIP----TNAQILYL----HDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             CCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CcCccCCCCC----CCCCEEEc----CCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcC
Confidence            3344444444    33444666    677777777777777777777777777 77777777777777777777777777


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      +.++... ..+++|+.|++++|.+.
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~  125 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT  125 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CccChhHhCcchhhCeEeccCCccc
Confidence            7766655 66777777777777665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.31  E-value=6.8e-12  Score=97.42  Aligned_cols=77  Identities=26%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             ccccccccC-chhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIR-KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~-~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.|+.++ .+.|.++++|+.|++++| .++.+++.+|.++++|+.|+|++|+++.+++.. ..+++|+.|++++|.+.
T Consensus        40 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  118 (220)
T 2v70_A           40 NNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT  118 (220)
T ss_dssp             CSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred             CCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence            555555553 244555555555555555 555555555555555555555555555554443 45555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=1.7e-11  Score=91.71  Aligned_cols=85  Identities=20%  Similarity=0.354  Sum_probs=79.1

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L   97 (209)
                      .++..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|
T Consensus        28 ~~l~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLEL----ESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEe----CCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence            45667888    999999999999999999999999999 999999999999999999999999999998877 889999


Q ss_pred             cEEEeeCCCCc
Q psy14513         98 EVLDIQSNPWT  108 (209)
Q Consensus        98 ~~l~l~~Np~~  108 (209)
                      +.+++++|.+.
T Consensus       103 ~~L~l~~N~l~  113 (177)
T 2o6r_A          103 KELALDTNQLK  113 (177)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECcCCcce
Confidence            99999999887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.25  E-value=3.1e-11  Score=97.53  Aligned_cols=84  Identities=24%  Similarity=0.347  Sum_probs=76.6

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.|+.++++.|.++++|++|++++| .++.++++.|..+++|+.|+|++|+++.+|... ..+++|+
T Consensus       101 ~L~~L~l----~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  175 (290)
T 1p9a_G          101 ALTVLDV----SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD  175 (290)
T ss_dssp             TCCEEEC----CSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred             CCCEEEC----CCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence            4455666    899999999999999999999999999 999999999999999999999999999999887 8899999


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      .|++++|.+.
T Consensus       176 ~L~L~~N~l~  185 (290)
T 1p9a_G          176 TLLLQENSLY  185 (290)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCcCC
Confidence            9999999887

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.24  E-value=2.1e-11  Score=101.37  Aligned_cols=76  Identities=28%  Similarity=0.345  Sum_probs=37.3

Q ss_pred             ccccccccCchhhc-CCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFK-NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~-~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      ++|.|+.+++..|. ++++|+.|+|++| .++.+++.+|.++++|++|+|++|+++.++... ..+++|+.|++++|.+
T Consensus        47 s~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           47 SHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             CSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence            45555555544444 4555555555555 555555444444444555555555554444433 4444444444444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.22  E-value=6.4e-11  Score=90.70  Aligned_cols=84  Identities=25%  Similarity=0.345  Sum_probs=54.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.++... ..+++|+
T Consensus        29 ~l~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  103 (208)
T 2o6s_A           29 QTTYLDL----ETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK  103 (208)
T ss_dssp             TCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcEEEc----CCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence            3444555    666666666666666666666666666 666666666666666666666666666666554 5666666


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      +|++++|.+.
T Consensus       104 ~L~L~~N~l~  113 (208)
T 2o6s_A          104 ELALNTNQLQ  113 (208)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEcCCCcCc
Confidence            6666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.22  E-value=5.1e-11  Score=93.98  Aligned_cols=76  Identities=24%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      ++|.+..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.++... ..+++|+.|++++|.+
T Consensus        43 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  119 (251)
T 3m19_A           43 QSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL  119 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence            555555555555555555555555555 555555555555555555555555555544443 4445555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.18  E-value=1.1e-10  Score=93.09  Aligned_cols=77  Identities=27%  Similarity=0.383  Sum_probs=39.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+++..|.++++|++|++++| .++.+++..|.++++|++|++++|+++.+++.. ..+++|++|++++|.+.
T Consensus        69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A           69 NDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            444555555444555555555555555 555555544544555555555555555544443 45555555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.16  E-value=2.8e-11  Score=98.80  Aligned_cols=84  Identities=21%  Similarity=0.350  Sum_probs=67.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      ++|.++.++...  .+++|++|++++| .++.+++. |..+++|+.|++++|+++.+|..+..+++|+.+++++|++.|+
T Consensus       177 ~~N~l~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          177 QYNFIYDVKGQV--VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCCEEECCC--CCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCcCccccccc--ccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence            666666665433  3777888888888 88888776 6678889999999999999988778899999999999999998


Q ss_pred             cCcHhHHH
Q psy14513        111 CSIQWLID  118 (209)
Q Consensus       111 C~~~~~~~  118 (209)
                      |...|+..
T Consensus       253 ~~~~~~~~  260 (317)
T 3o53_A          253 TLRDFFSK  260 (317)
T ss_dssp             HHHHHHHT
T ss_pred             CHHHHHhc
Confidence            76655543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.15  E-value=1.1e-10  Score=99.67  Aligned_cols=93  Identities=25%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             CCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc
Q psy14513          7 SGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS   86 (209)
Q Consensus         7 ~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   86 (209)
                      ...|..++    .++..|.+    ++|+|+.+++..|.++++|+.|+|++| .++.+++.+|.++++|++|+|++|+++.
T Consensus        67 ~~iP~~~~----~~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           67 SEVPQGIP----SNTRYLNL----MENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             SSCCSCCC----TTCSEEEC----CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred             CccCCCCC----CCccEEEC----cCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc
Confidence            44444444    34455777    888888888888888888888888888 8888888888888888888888888888


Q ss_pred             cCCCC-CCCCCccEEEeeCCCCc
Q psy14513         87 LPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        87 l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++... ..+++|++|++++|.+.
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCCCC
T ss_pred             cChhhhcccCCCCEEECCCCCcc
Confidence            87775 77888888888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.14  E-value=1.5e-10  Score=98.50  Aligned_cols=84  Identities=24%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.|+.+++..|.++++|++|+|++| .++.+++.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus        65 ~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           65 NTRLLNL----HENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             TCSEEEC----CSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCcEEEc----cCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            3344666    777777777777777777777777777 777777777777777777777777777776654 6777777


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      .|++++|.+.
T Consensus       140 ~L~L~~N~i~  149 (440)
T 3zyj_A          140 ELWLRNNPIE  149 (440)
T ss_dssp             EEECCSCCCC
T ss_pred             eeeCCCCccc
Confidence            7777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.11  E-value=2.3e-10  Score=100.21  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             CCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513          3 SKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN   82 (209)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N   82 (209)
                      ..+....|..++    .+++.|.+    ++|.|+.+++..|.++++|++|++++| .++.+++++|.++++|++|++++|
T Consensus        40 ~~~L~~ip~~~~----~~L~~L~L----s~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           40 NRNLTHVPKDLP----PRTKALSL----SQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             TSCCCSCCTTSC----TTCCEEEC----CSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred             CCCCccCCCCCC----CCcCEEEC----CCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence            344454555444    45666888    899999999999999999999999999 999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         83 AITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        83 ~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      +++.+|..  .+++|++|++++|.+.-
T Consensus       111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~  135 (562)
T 3a79_B          111 RLQNISCC--PMASLRHLDLSFNDFDV  135 (562)
T ss_dssp             CCCEECSC--CCTTCSEEECCSSCCSB
T ss_pred             cCCccCcc--ccccCCEEECCCCCccc
Confidence            99988876  68888888888887753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.10  E-value=4.2e-10  Score=89.79  Aligned_cols=77  Identities=23%  Similarity=0.324  Sum_probs=46.3

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+++.. ..+++|+.|++++|.+.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence            556666666655666666666666666 666666655555566666666666666555544 55556666666665554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.4e-10  Score=95.77  Aligned_cols=84  Identities=24%  Similarity=0.355  Sum_probs=52.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.++.+++..|.++++|++|++++| .++.+.+.+|.++++|++|++++|+++.++... ..+++|+
T Consensus        53 ~L~~L~l----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           53 AVKSLDL----SNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             cCcEEEC----CCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            4445555    666666666666666666666666666 666666666666666666666666666655543 5566666


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      +|++++|++.
T Consensus       128 ~L~L~~n~l~  137 (353)
T 2z80_A          128 FLNLLGNPYK  137 (353)
T ss_dssp             EEECTTCCCS
T ss_pred             EEECCCCCCc
Confidence            6666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.09  E-value=3.5e-10  Score=92.48  Aligned_cols=86  Identities=23%  Similarity=0.384  Sum_probs=75.9

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .++..|.+    ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.+|..+..+++|+
T Consensus       192 ~~L~~L~l----~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~  266 (330)
T 1xku_A          192 PSLTELHL----DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  266 (330)
T ss_dssp             TTCSEEEC----TTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             ccCCEEEC----CCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence            45666776    889999998889999999999999999 9999998888888999999999999999988888889999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      .+++++|++..
T Consensus       267 ~L~l~~N~i~~  277 (330)
T 1xku_A          267 VVYLHNNNISA  277 (330)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCcCCc
Confidence            99999998865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.09  E-value=2.3e-10  Score=93.69  Aligned_cols=86  Identities=23%  Similarity=0.292  Sum_probs=75.6

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .++..|.+    ++|.++.+++..|.++++|+.|++++| .++.+++..|..+++|+.|++++|+++.+|..+..+++|+
T Consensus       193 ~~L~~L~l----~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHL----DHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ  267 (332)
T ss_dssp             SSCSCCBC----CSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred             CCCCEEEC----CCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence            45566666    889999999889999999999999999 9999998888889999999999999999988778889999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      .+++++|++..
T Consensus       268 ~L~l~~N~l~~  278 (332)
T 2ft3_A          268 VVYLHTNNITK  278 (332)
T ss_dssp             EEECCSSCCCB
T ss_pred             EEECCCCCCCc
Confidence            99999998875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.08  E-value=6.1e-11  Score=88.65  Aligned_cols=86  Identities=26%  Similarity=0.270  Sum_probs=70.8

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC--CCCCCCCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L   97 (209)
                      ++..|.+    ++|.|+.+  ..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+|.  .+..+++|
T Consensus        43 ~L~~L~L----s~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           43 QFDAIDF----SDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL  115 (176)
T ss_dssp             CCSEEEC----CSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred             CCCEEEC----CCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence            4566666    88999888  57888899999999999 9998888877788889999999999988876  44778889


Q ss_pred             cEEEeeCCCCccccC
Q psy14513         98 EVLDIQSNPWTCDCS  112 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~  112 (209)
                      +.+++++|++.....
T Consensus       116 ~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A          116 TYLCILRNPVTNKKH  130 (176)
T ss_dssp             CEEECCSSGGGGSTT
T ss_pred             CEEEecCCCCCCcHh
Confidence            999999999875543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.08  E-value=1.6e-10  Score=95.56  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccc-cccCccccCCCCCcC-EEeccC
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKL-TFIHPYSFNNDWSLK-EFYINN   81 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l-~~i~~~~f~~l~~L~-~L~Ls~   81 (209)
                      ++.+.-|.+++.    +++.|.+    ++|+|+.+++++|.++++|++|+|++| .+ +.+++++|.++++++ .+.++.
T Consensus        19 ~~Lt~iP~~l~~----~l~~L~L----s~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           19 SKVTEIPSDLPR----NAIELRF----VLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TTCCSCCTTCCT----TCSEEEE----ESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CCCCccCcCcCC----CCCEEEc----cCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccC
Confidence            445666666654    4556888    999999999999999999999999999 76 668889999998876 467778


Q ss_pred             CcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         82 NAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        82 N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      |+++.++++. ..+++|+++++++|.+.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred             CcccccCchhhhhccccccccccccccc
Confidence            9999998877 89999999999999775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.07  E-value=2.5e-10  Score=98.80  Aligned_cols=97  Identities=13%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             CCCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC
Q psy14513          2 TSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN   81 (209)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~   81 (209)
                      +..+....|..++    .++..|++    ++|.++.+++..|.++++|++|++++| .++.+.+..|.++++|++|++++
T Consensus         8 s~n~l~~ip~~~~----~~L~~L~L----s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            8 SKNGLIHVPKDLS----QKTTILNI----SQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             TTSCCSSCCCSCC----TTCSEEEC----CSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred             CCCCccccccccc----ccccEEEC----CCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence            3444455555444    45666777    889999998888999999999999999 89888888888888899999998


Q ss_pred             CcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         82 NAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        82 N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      |+++.+|..  .+++|++|++++|.+..
T Consensus        79 N~l~~lp~~--~l~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           79 NKLVKISCH--PTVNLKHLDLSFNAFDA  104 (520)
T ss_dssp             SCCCEEECC--CCCCCSEEECCSSCCSS
T ss_pred             CceeecCcc--ccCCccEEeccCCcccc
Confidence            888888766  67777788887777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=3.8e-10  Score=96.70  Aligned_cols=81  Identities=22%  Similarity=0.379  Sum_probs=52.0

Q ss_pred             ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEE
Q psy14513         22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVL  100 (209)
Q Consensus        22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l  100 (209)
                      ..|.+    ++|.|+.+++..|.++++|++|+|++| .++.+.+.+|.++++|++|+|++|+++.++... ..+++|+.|
T Consensus        35 ~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           35 RLLDL----GKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             SEEEC----CSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred             cEEEC----CCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence            34555    666666666666666666666666666 666666666666666666666666666666554 556666666


Q ss_pred             EeeCCCC
Q psy14513        101 DIQSNPW  107 (209)
Q Consensus       101 ~l~~Np~  107 (209)
                      ++++|.+
T Consensus       110 ~Ls~n~i  116 (477)
T 2id5_A          110 DISENKI  116 (477)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCcc
Confidence            6666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.06  E-value=4.6e-10  Score=89.50  Aligned_cols=77  Identities=21%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+++.+|.++++|++|++++| .++.+++..|.++++|+.|++++|.++.++... ..+++|++|++++|.+.
T Consensus        60 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A           60 SRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             TTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence            455555555555555555555555555 555555555555555555555555555554433 55666666666666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=1.3e-10  Score=100.44  Aligned_cols=82  Identities=22%  Similarity=0.364  Sum_probs=62.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      ++|.|+.+++..  .+++|+.|+|++| .++.+++. |..+++|+.|++++|.++++|..+..+++|+.+++++|++.|+
T Consensus       177 s~N~l~~~~~~~--~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          177 QYNFIYDVKGQV--VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             TTSCCCEEECCC--CCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             CCCccccccccc--cCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence            555555554322  3667777777777 77777776 6667889999999999999888778889999999999999998


Q ss_pred             cCcHhH
Q psy14513        111 CSIQWL  116 (209)
Q Consensus       111 C~~~~~  116 (209)
                      |...|+
T Consensus       253 ~~~~~~  258 (487)
T 3oja_A          253 TLRDFF  258 (487)
T ss_dssp             HHHHHH
T ss_pred             chHHHH
Confidence            754443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=1.5e-10  Score=90.49  Aligned_cols=83  Identities=22%  Similarity=0.313  Sum_probs=49.7

Q ss_pred             cceeccccccccccccccCchhhcCCcccceeccccccc-ccccCccccCCCCCcCEEeccC-CcCcccCCCC-CCCCCc
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPK-LTFIHPYSFNNDWSLKEFYINN-NAITSLPHEL-GDWDSL   97 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~-l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~-~~l~~L   97 (209)
                      +..|.+    ++|.++.+++..|.++++|++|++++| . ++.+++.+|.++++|++|++++ |+++.++... ..+++|
T Consensus        33 l~~L~l----~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L  107 (239)
T 2xwt_C           33 TQTLKL----IETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL  107 (239)
T ss_dssp             CCEEEE----ESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred             ccEEEE----eCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence            344555    566666666666666666666666666 5 6666666666666666666665 6666655544 555666


Q ss_pred             cEEEeeCCCCc
Q psy14513         98 EVLDIQSNPWT  108 (209)
Q Consensus        98 ~~l~l~~Np~~  108 (209)
                      +.|++++|.+.
T Consensus       108 ~~L~l~~n~l~  118 (239)
T 2xwt_C          108 KFLGIFNTGLK  118 (239)
T ss_dssp             CEEEEEEECCC
T ss_pred             CEEeCCCCCCc
Confidence            66666655543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.04  E-value=4.9e-10  Score=83.43  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=71.8

Q ss_pred             eeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEE
Q psy14513         23 KVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLD  101 (209)
Q Consensus        23 ~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~  101 (209)
                      .+..    ++|.++.++...+   ++|++|+|++| .++.+++..|.++++|++|+|++|+++.+++.. ..+++|++|+
T Consensus        13 ~l~~----s~n~l~~ip~~~~---~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           13 TVDC----SGKSLASVPTGIP---TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             EEEC----TTSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEEe----CCCCcCccCccCC---CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            3556    8999999997653   78999999999 999999999999999999999999999999887 8999999999


Q ss_pred             eeCCCCcc
Q psy14513        102 IQSNPWTC  109 (209)
Q Consensus       102 l~~Np~~C  109 (209)
                      +++|.+.-
T Consensus        85 L~~N~l~~   92 (170)
T 3g39_A           85 LNDNQLKS   92 (170)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCccCE
Confidence            99999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.03  E-value=1.2e-09  Score=87.41  Aligned_cols=76  Identities=26%  Similarity=0.356  Sum_probs=37.0

Q ss_pred             cccc-ccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         31 ANSE-LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~-l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      ++|. +..+++..|.++++|++|++++| .++.+.+..|..+++|++|++++|+++.++... ..+++|+.|++++|.+
T Consensus        88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           88 SDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             CSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            4443 44444444555555555555555 555544444444445555555555554444433 4444455555544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=5.8e-10  Score=83.44  Aligned_cols=75  Identities=25%  Similarity=0.403  Sum_probs=69.5

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.+..+|...+   ++|+.|+|++| .++.+++..|.++++|++|+|++|+++.+|... ..+++|+.|++++|.+.-
T Consensus        20 ~~n~l~~iP~~~~---~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~   95 (174)
T 2r9u_A           20 QNIRLASVPAGIP---TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS   95 (174)
T ss_dssp             CSSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCccCCCcC---CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence            8999999987653   78999999999 999999999999999999999999999999887 899999999999998873

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=5.2e-10  Score=101.19  Aligned_cols=98  Identities=29%  Similarity=0.415  Sum_probs=78.0

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA   83 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~   83 (209)
                      ++....|..+.  ...+|..|.+    ++|.|+.++ ..|.+|++|+.|+|++| .|+.+ |..|..+.+|++|+|++|.
T Consensus       234 n~l~~l~~~~~--~l~~L~~L~L----s~N~l~~lp-~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          234 LQIFNISANIF--KYDFLTRLYL----NGNSLTELP-AEIKNLSNLRVLDLSHN-RLTSL-PAELGSCFQLKYFYFFDNM  304 (727)
T ss_dssp             SCCSCCCGGGG--GCCSCSCCBC----TTSCCSCCC-GGGGGGTTCCEEECTTS-CCSSC-CSSGGGGTTCSEEECCSSC
T ss_pred             CCCCCCChhhc--CCCCCCEEEe----eCCcCcccC-hhhhCCCCCCEEeCcCC-cCCcc-ChhhcCCCCCCEEECCCCC
Confidence            33444444443  2233455555    899999776 56889999999999999 99988 5557779999999999999


Q ss_pred             CcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         84 ITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        84 l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      ++.+|..+..+++|+.|+|++|++...
T Consensus       305 l~~lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          305 VTTLPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             CCccChhhhcCCCccEEeCCCCccCCC
Confidence            999998888999999999999999753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.02  E-value=6.5e-10  Score=97.85  Aligned_cols=95  Identities=16%  Similarity=0.188  Sum_probs=62.7

Q ss_pred             CCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCc
Q psy14513          6 NSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT   85 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~   85 (209)
                      ....|..++..    +..|++    ++|.|+.+++.+|.++++|++|++++| .+..+.+.+|.++++|++|++++|+++
T Consensus        24 l~~iP~~l~~~----l~~L~L----s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~   94 (606)
T 3t6q_A           24 LNEIPGTLPNS----TECLEF----SFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLI   94 (606)
T ss_dssp             CSSCCTTSCTT----CCEEEC----TTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred             cccCcCCCCCc----CcEEEc----cCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccc
Confidence            34455555543    344666    777777777777777777777777777 777777777777777777777777776


Q ss_pred             ccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         86 SLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        86 ~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      .+++.. ..+++|++|++++|.+..
T Consensus        95 ~~~~~~~~~l~~L~~L~L~~n~i~~  119 (606)
T 3t6q_A           95 FMAETALSGPKALKHLFFIQTGISS  119 (606)
T ss_dssp             EECTTTTSSCTTCCEEECTTSCCSC
T ss_pred             ccChhhhcccccccEeeccccCccc
Confidence            654433 666666666666665543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.01  E-value=8.6e-10  Score=97.07  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~l~l~~Np~  107 (209)
                      ++|.++.+++..|.++++|++|++++| .++.+.+.+|.++.+|++|++++|+++.+++. +..+++|++|++++|.+
T Consensus        40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           40 SFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            555555555555555555555555555 55555555555555555555555555554322 24555555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.01  E-value=4.8e-10  Score=97.47  Aligned_cols=84  Identities=23%  Similarity=0.357  Sum_probs=49.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      +++.|++    ++|.++.+++..|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|+
T Consensus        27 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           27 AMKSLDL----SFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             TCCEEEC----CSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CccEEEC----cCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            4444555    666666666666666666666666666 666666666666666666666666665555443 5555555


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      +|++++|.+.
T Consensus       102 ~L~Ls~n~l~  111 (549)
T 2z81_A          102 YLNLMGNPYQ  111 (549)
T ss_dssp             EEECTTCCCS
T ss_pred             EEECCCCccc
Confidence            5555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.97  E-value=8.2e-10  Score=86.25  Aligned_cols=91  Identities=21%  Similarity=0.241  Sum_probs=67.3

Q ss_pred             cccCCcccccceecccccccccc-ccccCchhhcCCcccceecccc-cccccccCccccCCCCCcCEEeccCCcCcccCC
Q psy14513         12 DISYDTQYTIMKVQLPYSTANSE-LYAIRKNTFKNLLNLQTLYCNF-NPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH   89 (209)
Q Consensus        12 ~~~~~~~~~l~~L~ll~~~s~n~-l~~l~~~~f~~l~~L~~L~Ls~-n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~   89 (209)
                      .++...+.++..|..+ ++++|. ++.+++.+|.++++|++|++++ | .++.+++.+|.++++|+.|++++|+++.+|.
T Consensus        45 ~i~~~~~~~l~~L~~L-~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~  122 (239)
T 2xwt_C           45 TIPSHAFSNLPNISRI-YVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD  122 (239)
T ss_dssp             EECTTTTTTCTTCCEE-EEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred             EECHHHccCCCCCcEE-eCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc
Confidence            4444444444333332 226775 8888888888899999999988 8 8888888888888888888888888888775


Q ss_pred             CCCCCCCcc---EEEeeCC
Q psy14513         90 ELGDWDSLE---VLDIQSN  105 (209)
Q Consensus        90 ~~~~l~~L~---~l~l~~N  105 (209)
                       +..+++|+   .+++++|
T Consensus       123 -~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          123 -LTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             -CTTCCBCCSEEEEEEESC
T ss_pred             -cccccccccccEEECCCC
Confidence             55556665   8888887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.97  E-value=1.5e-09  Score=94.57  Aligned_cols=75  Identities=19%  Similarity=0.161  Sum_probs=40.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNP  106 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np  106 (209)
                      ++|.++.+++.+|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|++|++++|.
T Consensus        36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  111 (570)
T 2z63_A           36 SFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN  111 (570)
T ss_dssp             CSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             cCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence            555555555555555555555555555 555555555555555555555555555544332 444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=8.2e-10  Score=90.88  Aligned_cols=76  Identities=14%  Similarity=0.165  Sum_probs=70.6

Q ss_pred             ccc-cccccCchhhcCCcccceecccc-cccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         31 ANS-ELYAIRKNTFKNLLNLQTLYCNF-NPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n-~l~~l~~~~f~~l~~L~~L~Ls~-n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      +++ .|+.+|.  +..+++|++|+|++ | .++.+++..|.++.+|+.|+|++|+|+++++.. ..+++|+.|+|++|.+
T Consensus        16 ~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           16 TRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             CSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             CCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            666 8999987  89999999999996 9 999999999999999999999999999998877 8999999999999998


Q ss_pred             cc
Q psy14513        108 TC  109 (209)
Q Consensus       108 ~C  109 (209)
                      .-
T Consensus        93 ~~   94 (347)
T 2ifg_A           93 ES   94 (347)
T ss_dssp             SC
T ss_pred             ce
Confidence            63

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.96  E-value=1.5e-09  Score=90.61  Aligned_cols=76  Identities=24%  Similarity=0.405  Sum_probs=39.9

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      ++|.+..+++..|.++++|++|++++| .++.+++..|.++++|++|++++|+++.+|... ..+++|++|++++|.+
T Consensus        77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           77 NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            455555555555555555555555555 555555555555555555555555555555444 4455555555555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.96  E-value=2.5e-09  Score=87.53  Aligned_cols=82  Identities=30%  Similarity=0.435  Sum_probs=60.1

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .+++.|.+    ++|.+..+++..|.++++|++|++++| .++.+.+.+|.++++|++|++++|+++.+|....  ++|+
T Consensus        54 ~~l~~L~l----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~  126 (332)
T 2ft3_A           54 PDTTLLDL----QNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV  126 (332)
T ss_dssp             TTCCEEEC----CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred             CCCeEEEC----CCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence            34555666    788888888888888888888888888 8888888888888888888888888777765442  4455


Q ss_pred             EEEeeCCCC
Q psy14513         99 VLDIQSNPW  107 (209)
Q Consensus        99 ~l~l~~Np~  107 (209)
                      +|++++|.+
T Consensus       127 ~L~l~~n~i  135 (332)
T 2ft3_A          127 ELRIHDNRI  135 (332)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcc
Confidence            555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.95  E-value=2.5e-09  Score=89.33  Aligned_cols=85  Identities=24%  Similarity=0.268  Sum_probs=75.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.+..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+++.. ..+++|+
T Consensus        94 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A           94 TIQKLYM----GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ  168 (390)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred             CcCEEEC----CCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence            3444555    899999999999999999999999999 999999999998999999999999999987765 8899999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      .|++++|.+..
T Consensus       169 ~L~l~~n~l~~  179 (390)
T 3o6n_A          169 NLQLSSNRLTH  179 (390)
T ss_dssp             EEECCSSCCSB
T ss_pred             EEECCCCcCCc
Confidence            99999998764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.95  E-value=1.3e-09  Score=96.01  Aligned_cols=85  Identities=21%  Similarity=0.242  Sum_probs=62.3

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCccc--CCCCCCCCCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L   97 (209)
                      +|..|.+    ++|.|+.+|. .|.++++|+.|+|++| .++.++  .|..+++|+.|+|++|+++++  |..+..+++|
T Consensus       464 ~L~~L~L----s~N~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          464 LVTHLDL----SHNRLRALPP-ALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             TCCEEEC----CSSCCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cCcEeec----Ccccccccch-hhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            3444555    7788887654 6777888888888888 888765  566778888888888888877  4445778888


Q ss_pred             cEEEeeCCCCccccC
Q psy14513         98 EVLDIQSNPWTCDCS  112 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~  112 (209)
                      +.|++++|++....+
T Consensus       536 ~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          536 VLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CEEECTTSGGGGSSS
T ss_pred             CEEEecCCcCCCCcc
Confidence            888888888766544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.94  E-value=3.6e-09  Score=86.43  Aligned_cols=82  Identities=30%  Similarity=0.471  Sum_probs=68.3

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      .+..|.+    ++|.++.+++..|.++++|++|++++| .++.+.+..|..+++|++|++++|.++.+|....  ++|+.
T Consensus        53 ~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~  125 (330)
T 1xku_A           53 DTALLDL----QNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE  125 (330)
T ss_dssp             TCCEEEC----CSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred             CCeEEEC----CCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence            4455777    899999999999999999999999999 9999999999999999999999999998876553  46666


Q ss_pred             EEeeCCCCc
Q psy14513        100 LDIQSNPWT  108 (209)
Q Consensus       100 l~l~~Np~~  108 (209)
                      |++++|.+.
T Consensus       126 L~l~~n~l~  134 (330)
T 1xku_A          126 LRVHENEIT  134 (330)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCccc
Confidence            666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.94  E-value=6.8e-10  Score=82.08  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=50.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC--CCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+  ..|..+++|++|++++| .+....+..+..+++|++|++++|.++.++  ..+..+++|+.|++++|++.
T Consensus        57 ~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           57 INVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             cCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            66667666  56666777777777777 666655555555667777777777777665  23366677777777777665


Q ss_pred             c
Q psy14513        109 C  109 (209)
Q Consensus       109 C  109 (209)
                      -
T Consensus       134 ~  134 (168)
T 2ell_A          134 N  134 (168)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.93  E-value=2.4e-09  Score=90.91  Aligned_cols=84  Identities=25%  Similarity=0.277  Sum_probs=63.2

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~   99 (209)
                      +..|.+    ++|.+..+++..|.++++|++|++++| .++.+.+..|.++++|+.|++++|+++.+++. +..+++|++
T Consensus       301 L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          301 LEQLTL----AQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             CCEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCEEEC----CCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            444555    778888877777878888888888888 78777777777778888888888888776444 377788888


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      |++++|.+..
T Consensus       376 L~L~~N~l~~  385 (455)
T 3v47_A          376 LALDTNQLKS  385 (455)
T ss_dssp             EECCSSCCSC
T ss_pred             EECCCCcccc
Confidence            8888887764

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.93  E-value=5.4e-10  Score=81.00  Aligned_cols=75  Identities=21%  Similarity=0.181  Sum_probs=36.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC--CCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+  ..|.++++|++|++++| .++...+..+..+++|++|++++|+++.++  ..+..+++|+.+++++|++.
T Consensus        50 ~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           50 INVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             TTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             cCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            44555544  34444555555555555 554433444433445555555555555433  22244555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.91  E-value=3.7e-09  Score=93.38  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=39.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+++..|.++++|++|+|++| .++.+++..|..+++|++|++++|.++.+++.. ..+++|+.|++++|.+.
T Consensus       107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          107 GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            445555555555555555555555555 555555555555555555555555555544433 44555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.90  E-value=2.6e-09  Score=95.27  Aligned_cols=77  Identities=18%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+++++|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|++|++++|.+.
T Consensus        57 s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A           57 GFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             CSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence            455555555555555555555555555 555555555555555666666666665555433 55566666666666543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.89  E-value=3.3e-09  Score=93.69  Aligned_cols=85  Identities=22%  Similarity=0.375  Sum_probs=72.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~   98 (209)
                      ++..|.+    ++|.|..+++..|.++++|+.|+|++| .+..+++..|.++++|++|+|++|.++.+|... ..+++|+
T Consensus        76 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           76 QVELLNL----NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCSEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcEEEC----CCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            3444555    788899988888899999999999999 899998888888889999999999999888877 8889999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      +|++++|.+..
T Consensus       151 ~L~Ls~N~l~~  161 (597)
T 3oja_B          151 TLSMSNNNLER  161 (597)
T ss_dssp             EEECCSSCCCB
T ss_pred             EEEeeCCcCCC
Confidence            99999987754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.86  E-value=1.5e-09  Score=98.66  Aligned_cols=88  Identities=14%  Similarity=0.180  Sum_probs=77.8

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~   99 (209)
                      +..|++    ++|.+++..+..|.+++.|+.|+|++| .+++..|..|.++.+|+.|||++|++++ +|..+..+++|++
T Consensus       634 L~~LdL----s~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~  708 (768)
T 3rgz_A          634 MMFLDM----SYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE  708 (768)
T ss_dssp             CCEEEC----CSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred             ccEEEC----cCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence            344555    999999999999999999999999999 9999889999999999999999999997 6666699999999


Q ss_pred             EEeeCCCCccccCc
Q psy14513        100 LDIQSNPWTCDCSI  113 (209)
Q Consensus       100 l~l~~Np~~C~C~~  113 (209)
                      +++++|++.+.-+.
T Consensus       709 L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          709 IDLSNNNLSGPIPE  722 (768)
T ss_dssp             EECCSSEEEEECCS
T ss_pred             EECcCCcccccCCC
Confidence            99999999876553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.84  E-value=1.9e-09  Score=79.60  Aligned_cols=84  Identities=21%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCC---CC-CCC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPH---EL-GDW   94 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~---~~-~~l   94 (209)
                      ++..|.+    ++|.+....+..+.++++|++|++++| .++.++. ..+..+++|+.|++++|.++.++.   .. ..+
T Consensus        72 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l  146 (168)
T 2ell_A           72 KLKKLEL----SENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL  146 (168)
T ss_dssp             SCCEEEE----ESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred             CCCEEEC----cCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence            3445555    899999977788888999999999999 9999865 778889999999999999999987   34 889


Q ss_pred             CCccEEEeeCCCCc
Q psy14513         95 DSLEVLDIQSNPWT  108 (209)
Q Consensus        95 ~~L~~l~l~~Np~~  108 (209)
                      ++|+.+++++|+..
T Consensus       147 ~~L~~L~l~~n~~~  160 (168)
T 2ell_A          147 PQLTYLDGYDREDQ  160 (168)
T ss_dssp             SSCCEETTEETTSC
T ss_pred             ccCcEecCCCCChh
Confidence            99999999998764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.84  E-value=5.7e-09  Score=84.28  Aligned_cols=78  Identities=18%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             ccccccccCchhhcCCcccceecccccccccc-cCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-IHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.+..+.+..|.++++|++|++++| .+.. +.+..|..+++|+.|++++|+++.+++.. ..+++|+.|++++|.+.
T Consensus       134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          134 SHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             TTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             CCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence            566666666666666666666666666 5554 44555555666666666666666654433 56666666666666654


Q ss_pred             c
Q psy14513        109 C  109 (209)
Q Consensus       109 C  109 (209)
                      .
T Consensus       213 ~  213 (306)
T 2z66_A          213 S  213 (306)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.83  E-value=8.6e-09  Score=81.97  Aligned_cols=82  Identities=22%  Similarity=0.222  Sum_probs=61.2

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .++..|.+    ++|.++.++  .|..+++|+.|++++| .++.++  .+..+++|+.|++++|+++.+ ..+..+++|+
T Consensus       106 ~~L~~L~L----~~N~l~~~~--~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~  175 (263)
T 1xeu_A          106 ACLSRLFL----DNNELRDTD--SLIHLKNLEILSIRNN-KLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVN  175 (263)
T ss_dssp             SSCCEEEC----CSSCCSBSG--GGTTCTTCCEEECTTS-CCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCC
T ss_pred             CcccEEEc----cCCccCCCh--hhcCcccccEEECCCC-cCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCC
Confidence            44555555    777777764  4777888888888888 888774  466678888888888888877 3447788888


Q ss_pred             EEEeeCCCCccc
Q psy14513         99 VLDIQSNPWTCD  110 (209)
Q Consensus        99 ~l~l~~Np~~C~  110 (209)
                      .+++++|++.|.
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            888888888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.83  E-value=9.8e-10  Score=82.01  Aligned_cols=84  Identities=20%  Similarity=0.171  Sum_probs=73.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCC----CCCC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHE----LGDW   94 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~----~~~l   94 (209)
                      ++..|.+    ++|.|+.+++..|.++++|++|++++| .++.++. ..+..+++|+.|++++|.++.+|..    +..+
T Consensus        65 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l  139 (176)
T 1a9n_A           65 RLKTLLV----NNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV  139 (176)
T ss_dssp             SCCEEEC----CSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred             CCCEEEC----CCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC
Confidence            3445555    899999999988999999999999999 9998876 5777899999999999999999875    4789


Q ss_pred             CCccEEEeeCCCCc
Q psy14513         95 DSLEVLDIQSNPWT  108 (209)
Q Consensus        95 ~~L~~l~l~~Np~~  108 (209)
                      ++|+.+++++|+..
T Consensus       140 ~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          140 PQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCSEETTEECCHH
T ss_pred             CccceeCCCcCCHH
Confidence            99999999988754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.79  E-value=1.9e-08  Score=89.56  Aligned_cols=75  Identities=20%  Similarity=0.174  Sum_probs=42.3

Q ss_pred             ccccccccCchhhcCCcccceecc------cccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYC------NFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS  104 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~L------s~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~  104 (209)
                      ++|.++.++ ..+.++++|+.|++      ++| .+....|..|..+++|+.|++++|+++.+|..+.  ++|+.|++++
T Consensus       521 s~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~  596 (636)
T 4eco_A          521 SYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKD  596 (636)
T ss_dssp             CSSCCSSCC-CGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCS
T ss_pred             CCCCCCCcC-hhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcC
Confidence            555555533 23344555555555      234 4444444555556666666666666666665543  5666667777


Q ss_pred             CCCcc
Q psy14513        105 NPWTC  109 (209)
Q Consensus       105 Np~~C  109 (209)
                      ||+.|
T Consensus       597 N~l~~  601 (636)
T 4eco_A          597 NPNIS  601 (636)
T ss_dssp             CTTCE
T ss_pred             CCCcc
Confidence            76665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.79  E-value=3e-09  Score=76.98  Aligned_cols=84  Identities=18%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             ccccceecccccccccccc--ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCC
Q psy14513         18 QYTIMKVQLPYSTANSELY--AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDW   94 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~--~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l   94 (209)
                      ..++..|.+    ++|.++  .++ ..|..+++|++|++++| .++.+  ..|..+++|++|++++|.++. +|.....+
T Consensus        16 ~~~l~~L~l----~~n~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           16 PSDVKELVL----DNSRSNEGKLE-GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             GGGCSEEEC----TTCBCBTTBCC-SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             CccCeEEEc----cCCcCChhHHH-HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            345667777    899998  555 57889999999999999 99988  678889999999999999998 54433679


Q ss_pred             CCccEEEeeCCCCcc
Q psy14513         95 DSLEVLDIQSNPWTC  109 (209)
Q Consensus        95 ~~L~~l~l~~Np~~C  109 (209)
                      ++|+.+++++|.+.-
T Consensus        88 ~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           88 PNLTHLNLSGNKIKD  102 (149)
T ss_dssp             TTCCEEECTTSCCCS
T ss_pred             CCCCEEECCCCcCCC
Confidence            999999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.79  E-value=9.5e-09  Score=84.24  Aligned_cols=86  Identities=16%  Similarity=0.192  Sum_probs=64.2

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L   97 (209)
                      .+|..|.+    ++|.++.++. .|.++++|++|++++| .++.+++. |..+++|+.|++++|.+.. +|..+..+++|
T Consensus       183 ~~L~~L~L----~~n~l~~lp~-~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          183 VNLQSLRL----EWTGIRSLPA-SIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             TTCCEEEE----EEECCCCCCG-GGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             CCCCEEEC----cCCCcCcchH-hhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence            34455665    7888887664 4788888888888888 88887664 6668888888888877766 55555788888


Q ss_pred             cEEEeeCCCCcccc
Q psy14513         98 EVLDIQSNPWTCDC  111 (209)
Q Consensus        98 ~~l~l~~Np~~C~C  111 (209)
                      +.|++++|++...-
T Consensus       256 ~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          256 KRLILKDCSNLLTL  269 (328)
T ss_dssp             CEEECTTCTTCCBC
T ss_pred             CEEECCCCCchhhc
Confidence            88888888765543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.78  E-value=6.7e-09  Score=78.81  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L   97 (209)
                      .++..|.+    ++|.+..++  .|..+++|++|++++| .++...+..|..+++|++|++++|.++. .+..+..+++|
T Consensus        66 ~~L~~L~l----~~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           66 HNIKDLTI----NNIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TTCSEEEE----ESCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             CCCCEEEc----cCCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            34555666    778777664  6778899999999999 8888777778888899999999999987 33334788899


Q ss_pred             cEEEeeCCCCc
Q psy14513         98 EVLDIQSNPWT  108 (209)
Q Consensus        98 ~~l~l~~Np~~  108 (209)
                      +.|++++|++.
T Consensus       139 ~~L~L~~n~~i  149 (197)
T 4ezg_A          139 NSIDLSYNGAI  149 (197)
T ss_dssp             CEEECCSCTBC
T ss_pred             CEEEccCCCCc
Confidence            99999998833

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.77  E-value=2.3e-09  Score=87.28  Aligned_cols=86  Identities=22%  Similarity=0.176  Sum_probs=73.4

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~   99 (209)
                      +..|.+    ++|.+....+..|..+++|+.|++++| .++...+. +..+++|++|++++|+++. +|..+..+++|+.
T Consensus       199 L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  272 (313)
T 1ogq_A          199 LAFVDL----SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             CSEEEC----CSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             ccEEEC----cCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence            566666    899999999999999999999999999 98876666 6668899999999999995 6655688999999


Q ss_pred             EEeeCCCCccccC
Q psy14513        100 LDIQSNPWTCDCS  112 (209)
Q Consensus       100 l~l~~Np~~C~C~  112 (209)
                      |++++|++...-+
T Consensus       273 L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          273 LNVSFNNLCGEIP  285 (313)
T ss_dssp             EECCSSEEEEECC
T ss_pred             EECcCCcccccCC
Confidence            9999999886544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.77  E-value=5e-09  Score=85.14  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             Ccccccceecccccccccccc---ccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCCC
Q psy14513         16 DTQYTIMKVQLPYSTANSELY---AIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL   91 (209)
Q Consensus        16 ~~~~~l~~L~ll~~~s~n~l~---~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~   91 (209)
                      ....++..|.+    ++|.|+   .++...|.++++|++|++++| .++...+ ..+..+++|++|++++|+++.+|..+
T Consensus       198 ~~l~~L~~L~L----~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          198 LKFPTLQVLAL----RNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             TSCTTCCEEEC----TTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred             ccCCCCCEEEC----CCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence            34445566666    788888   344466667888888888888 8877664 45566777888888888888777665


Q ss_pred             CCCCCccEEEeeCCCCccc
Q psy14513         92 GDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        92 ~~l~~L~~l~l~~Np~~C~  110 (209)
                      .  ++|+.|++++|.+...
T Consensus       273 ~--~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC
T ss_pred             c--CCceEEECCCCCCCCC
Confidence            5  6788888888877653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.77  E-value=1.2e-08  Score=92.72  Aligned_cols=91  Identities=24%  Similarity=0.248  Sum_probs=75.6

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~   99 (209)
                      +..|.+    ++|.+....+..|.++++|++|++++| .+....|..|..+++|++|++++|+++. +|..+..+++|+.
T Consensus       468 L~~L~L----~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~  542 (768)
T 3rgz_A          468 LETLIL----DFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW  542 (768)
T ss_dssp             CCEEEC----CSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred             ceEEEe----cCCcccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence            444555    788888888888888999999999999 8888888888888899999999999986 6656688899999


Q ss_pred             EEeeCCCCccccCcHhH
Q psy14513        100 LDIQSNPWTCDCSIQWL  116 (209)
Q Consensus       100 l~l~~Np~~C~C~~~~~  116 (209)
                      +++++|++.|.++..++
T Consensus       543 L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          543 LDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             EECCSSEEESBCCGGGG
T ss_pred             EECCCCccCCcCChHHh
Confidence            99999999988886553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.75  E-value=1.1e-08  Score=77.56  Aligned_cols=84  Identities=14%  Similarity=0.110  Sum_probs=63.8

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc-CcccCCCCCCCCCcc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHELGDWDSLE   98 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~   98 (209)
                      +|..|.+    ++|.++...+..|..+++|++|++++| .++...+..|..+++|++|++++|+ ++.++ .+..+++|+
T Consensus        89 ~L~~L~l----~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~  162 (197)
T 4ezg_A           89 NLERLRI----MGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK  162 (197)
T ss_dssp             TCCEEEE----ECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred             CCCEEEe----ECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence            3455555    778888766677888888888888888 8887667777778888888888887 77775 346778888


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      .|++++|++.-
T Consensus       163 ~L~l~~n~i~~  173 (197)
T 4ezg_A          163 SLNIQFDGVHD  173 (197)
T ss_dssp             EEECTTBCCCC
T ss_pred             EEECCCCCCcC
Confidence            88888877653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.75  E-value=1.5e-08  Score=82.30  Aligned_cols=73  Identities=25%  Similarity=0.324  Sum_probs=41.3

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.++.+++  |..+++|+.|++++| .++.+++  +..+++|++|++++|+++.+++ +..+++|+.+++++|++.+
T Consensus       159 ~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          159 GNAQVSDLTP--LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             cCCcCCCChh--hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            4555555444  455555555555555 5555544  4445556666666666665542 3556666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.74  E-value=2.6e-08  Score=91.28  Aligned_cols=78  Identities=23%  Similarity=0.265  Sum_probs=68.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.+..+++.+|.++++|++|++++| .++.+.+..|.++++|+.|++++|.++.++... ..+++|+.|++++|.+..
T Consensus       298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          298 AYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             ESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             CCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            789999998889999999999999999 999888888988999999999999998887765 788889999888887653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.74  E-value=1.1e-08  Score=83.14  Aligned_cols=84  Identities=10%  Similarity=0.014  Sum_probs=64.2

Q ss_pred             ccceecccccccccccccc---C-chhhcCCcccceecccccccccc---cCccccCCCCCcCEEeccCCcCcccCC-CC
Q psy14513         20 TIMKVQLPYSTANSELYAI---R-KNTFKNLLNLQTLYCNFNPKLTF---IHPYSFNNDWSLKEFYINNNAITSLPH-EL   91 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l---~-~~~f~~l~~L~~L~Ls~n~~l~~---i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~   91 (209)
                      ++..|.+    ++|.+...   + ...|.++++|++|++++| .++.   +....|..+++|+.|++++|+++..++ ..
T Consensus       174 ~L~~L~L----s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          174 ALSTLDL----SDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             SCCEEEC----CSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             CCCEEEC----CCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            4455555    88887653   1 223478999999999999 9884   444566678899999999999998653 33


Q ss_pred             -CCCCCccEEEeeCCCCc
Q psy14513         92 -GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        92 -~~l~~L~~l~l~~Np~~  108 (209)
                       ..+++|+.|++++|.+.
T Consensus       249 ~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS
T ss_pred             hhhcCCCCEEECCCCccC
Confidence             67899999999999887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.73  E-value=1.3e-08  Score=89.62  Aligned_cols=81  Identities=19%  Similarity=0.273  Sum_probs=71.3

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL  100 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l  100 (209)
                      +..|.+    ++|.|+.++.  |.++++|+.|+|++| .++.++. .|..+++|+.|+|++|+++++| .+..+++|+.|
T Consensus       443 L~~L~L----s~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          443 VRVLHL----AHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQEL  513 (567)
T ss_dssp             CSEEEC----TTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred             ceEEEe----cCCCCCCCcC--ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence            445666    9999999875  899999999999999 9998855 6778999999999999999998 66899999999


Q ss_pred             EeeCCCCccc
Q psy14513        101 DIQSNPWTCD  110 (209)
Q Consensus       101 ~l~~Np~~C~  110 (209)
                      ++++|.+..-
T Consensus       514 ~Ls~N~l~~~  523 (567)
T 1dce_A          514 LLCNNRLQQS  523 (567)
T ss_dssp             ECCSSCCCSS
T ss_pred             ECCCCCCCCC
Confidence            9999988753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.73  E-value=9.5e-09  Score=92.94  Aligned_cols=76  Identities=32%  Similarity=0.350  Sum_probs=68.0

Q ss_pred             cccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      +++|.+..+++..| ++++|++|+|++| .++.++ ..|..+.+|++|+|++|+++.+|..+..+++|++|+|++|.+.
T Consensus       231 Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          231 LSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT  306 (727)
T ss_dssp             CTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred             CCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence            38999999998877 7999999999999 999776 5567799999999999999999888888999999999999764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.72  E-value=1.6e-08  Score=82.27  Aligned_cols=87  Identities=17%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccC-CCCCcCEEeccCCcCcccCCCCCCC
Q psy14513         16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWSLKEFYINNNAITSLPHELGDW   94 (209)
Q Consensus        16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~l   94 (209)
                      ..+.++..|.+    ++|.++.+++..|..+++|++|++++| .++.+.+..+. .+++|++|++++|.++.++.. ..+
T Consensus       117 ~~~~~L~~L~l----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l  190 (317)
T 3o53_A          117 SRGQGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF  190 (317)
T ss_dssp             CCCSSCEEEEC----CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC
T ss_pred             cccCCCCEEEC----CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-ccc
Confidence            33455566666    777777777777777777777777777 77777665553 466777777777777776433 236


Q ss_pred             CCccEEEeeCCCCc
Q psy14513         95 DSLEVLDIQSNPWT  108 (209)
Q Consensus        95 ~~L~~l~l~~Np~~  108 (209)
                      ++|+.|++++|.+.
T Consensus       191 ~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          191 AKLKTLDLSSNKLA  204 (317)
T ss_dssp             TTCCEEECCSSCCC
T ss_pred             ccCCEEECCCCcCC
Confidence            67777777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.71  E-value=1.9e-08  Score=81.59  Aligned_cols=84  Identities=19%  Similarity=0.144  Sum_probs=64.4

Q ss_pred             cccceeccccccccccccccCch---hhcCCcccceecccccccccccCccccCCC---CCcCEEeccCCcCcccCCCCC
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKN---TFKNLLNLQTLYCNFNPKLTFIHPYSFNND---WSLKEFYINNNAITSLPHELG   92 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~---~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l---~~L~~L~Ls~N~l~~l~~~~~   92 (209)
                      .+|..|.+    ++|.++.++..   .|.++++|++|+|++| .+..+.|..+..+   ++|++|++++|+++.+|..+.
T Consensus       197 ~~L~~L~L----s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~  271 (310)
T 4glp_A          197 PAIQNLAL----RNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP  271 (310)
T ss_dssp             CCCCSCBC----CSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred             CCCCEEEC----CCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence            34555666    88998876643   4577889999999999 8888866555444   589999999999998877663


Q ss_pred             CCCCccEEEeeCCCCcc
Q psy14513         93 DWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        93 ~l~~L~~l~l~~Np~~C  109 (209)
                        ++|+.|++++|.+..
T Consensus       272 --~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          272 --AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             --SCCSCEECCSCCCCS
T ss_pred             --CCCCEEECCCCcCCC
Confidence              688889999888874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.71  E-value=9.5e-09  Score=83.62  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=42.0

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccEEEeeCCCCc
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      |.+....+..|.++++|++|++++| .++...+..|..+++|++|++++|.++. +|..+..+++|++|++++|.+.
T Consensus        87 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A           87 NNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             TTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence            5555555555556666666666666 5555555555555556666666665553 3333355555555555555554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.70  E-value=1.5e-08  Score=82.20  Aligned_cols=85  Identities=7%  Similarity=0.019  Sum_probs=65.5

Q ss_pred             cccceeccccccccccccc---cC-chhhcCCcccceecccccccccccCcc---ccCCCCCcCEEeccCCcCccc-CCC
Q psy14513         19 YTIMKVQLPYSTANSELYA---IR-KNTFKNLLNLQTLYCNFNPKLTFIHPY---SFNNDWSLKEFYINNNAITSL-PHE   90 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~---l~-~~~f~~l~~L~~L~Ls~n~~l~~i~~~---~f~~l~~L~~L~Ls~N~l~~l-~~~   90 (209)
                      .+|..|++    ++|.+..   ++ ...+..+++|++|++++| .++.++..   .+..+++|++|+|++|+++.+ |..
T Consensus       169 ~~L~~L~L----s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          169 PALTSLDL----SDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             TTCCEEEC----CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCCEEEC----CCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            34555666    8898765   33 233468999999999999 99766553   356678999999999999996 666


Q ss_pred             CCCC---CCccEEEeeCCCCc
Q psy14513         91 LGDW---DSLEVLDIQSNPWT  108 (209)
Q Consensus        91 ~~~l---~~L~~l~l~~Np~~  108 (209)
                      +..+   ++|++|++++|.+.
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC
T ss_pred             HHhccCcCcCCEEECCCCCCC
Confidence            6444   79999999999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.68  E-value=2.1e-08  Score=86.53  Aligned_cols=83  Identities=18%  Similarity=0.178  Sum_probs=41.5

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccC-CCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      .++..|.+    ++|.++.+++..|.++++|+.|++++| .++.+.+..|. .+++|+.|+|++|.++.++.. ..+++|
T Consensus       120 ~~L~~L~L----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L  193 (487)
T 3oja_A          120 QGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL  193 (487)
T ss_dssp             SSCEEEEC----CSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred             CCCCEEEC----CCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCC
Confidence            33444444    555555555555555555555555555 55555444443 344455555555555544322 124444


Q ss_pred             cEEEeeCCCC
Q psy14513         98 EVLDIQSNPW  107 (209)
Q Consensus        98 ~~l~l~~Np~  107 (209)
                      +.|++++|.+
T Consensus       194 ~~L~Ls~N~l  203 (487)
T 3oja_A          194 KTLDLSSNKL  203 (487)
T ss_dssp             CEEECCSSCC
T ss_pred             CEEECCCCCC
Confidence            4444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.67  E-value=6.8e-08  Score=76.72  Aligned_cols=70  Identities=23%  Similarity=0.383  Sum_probs=38.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      ++|.|+.+++  |.++++|++|++++| .++.+++..+   .+|+.|++++|+++.++ .+..+++|+.|++++|.+
T Consensus        71 ~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A           71 SHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             CSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC
T ss_pred             CCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC
Confidence            6667776665  666677777777776 6666554322   44444444444444442 123444444555544444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=6.3e-08  Score=89.15  Aligned_cols=85  Identities=20%  Similarity=0.205  Sum_probs=70.2

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCC-------CcCEEeccCCcCcccCCCCC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-------SLKEFYINNNAITSLPHELG   92 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~   92 (209)
                      ++..|.+    ++|.+..++...|..+++|+.|+|++| .++.++...|....       +|+.|+|++|+++.+|..+.
T Consensus       674 ~L~~L~L----s~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~  748 (876)
T 4ecn_A          674 NASTVTL----SYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR  748 (876)
T ss_dssp             CEEEEEC----CSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred             CcCEEEc----cCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence            4555666    889999888888888899999999999 99988888877543       78999999999998887765


Q ss_pred             --CCCCccEEEeeCCCCcc
Q psy14513         93 --DWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        93 --~l~~L~~l~l~~Np~~C  109 (209)
                        .+++|+.|++++|.+..
T Consensus       749 ~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          749 ATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             TTTCTTCCEEECCSSCCSS
T ss_pred             hccCCCcCEEEeCCCCCCc
Confidence              88899999999988764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.64  E-value=6.3e-08  Score=78.56  Aligned_cols=70  Identities=26%  Similarity=0.422  Sum_probs=32.5

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP  106 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np  106 (209)
                      ++|.++.+++  |..+++|++|++++| .++.+++  +..+++|+.|++++|+++.++. +..+++|+.|++++|.
T Consensus       115 ~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          115 TSTQITDVTP--LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK  184 (308)
T ss_dssp             TTSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CCCCCCCchh--hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence            4555555442  445555555555555 5544443  3334444444444444444332 3334444444444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=1.1e-07  Score=87.56  Aligned_cols=75  Identities=24%  Similarity=0.215  Sum_probs=32.8

Q ss_pred             ccccccccCchhh-cCCcccceecccccccccccCccccCCCCCcCEEeccC------CcCcc-cCCCCCCCCCccEEEe
Q psy14513         31 ANSELYAIRKNTF-KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN------NAITS-LPHELGDWDSLEVLDI  102 (209)
Q Consensus        31 s~n~l~~l~~~~f-~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~------N~l~~-l~~~~~~l~~L~~l~l  102 (209)
                      ++|.|+.++...+ ..+++|+.|+|++| .++.++.. +..+++|+.|+|++      |++.. +|..+..+++|+.|++
T Consensus       736 s~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          736 RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             CCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            4555554443322 24555555555555 55554322 22344444444433      33322 3333344444444444


Q ss_pred             eCCCC
Q psy14513        103 QSNPW  107 (209)
Q Consensus       103 ~~Np~  107 (209)
                      ++|++
T Consensus       814 s~N~L  818 (876)
T 4ecn_A          814 GSNDI  818 (876)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            44444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.63  E-value=3.5e-08  Score=79.51  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.++  .+..+++|+.|++++| .++.+  ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|.+.
T Consensus       120 ~~n~i~~~~--~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          120 EHNGISDIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             TTSCCCCCG--GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCcCCCCh--hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence            555555542  3445555555555555 55554  234445555555555555555433 444455555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.63  E-value=4.1e-08  Score=86.44  Aligned_cols=77  Identities=18%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCc-------CEEeccCCcCcccCCCCC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSL-------KEFYINNNAITSLPHELG   92 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L-------~~L~Ls~N~l~~l~~~~~   92 (209)
                      +|..|.+    ++|.|+.++.  |.  ++|+.|+|++| .|+.++.  |..  +|       +.|+|++|+++.+|..+.
T Consensus       161 ~L~~L~L----s~N~L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~  227 (571)
T 3cvr_A          161 SLEVLSV----RNNQLTFLPE--LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL  227 (571)
T ss_dssp             TCCEEEC----CSSCCSCCCC--CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred             CcCEEEC----CCCCCCCcch--hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence            4455555    7788887776  54  78888888888 8887777  442  66       899999999999888775


Q ss_pred             CCCCccEEEeeCCCCcc
Q psy14513         93 DWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        93 ~l~~L~~l~l~~Np~~C  109 (209)
                      .+++|+.|++++|++.+
T Consensus       228 ~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             GSCTTEEEECCSSSCCH
T ss_pred             cCCCCCEEEeeCCcCCC
Confidence            59999999999999876

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.63  E-value=3.1e-08  Score=81.16  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             CCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         71 DWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        71 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      +++|++|++++|+++.+|..+..+++|+.|++++|.+.
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence            45555555555555555544455556666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.61  E-value=5.4e-08  Score=86.62  Aligned_cols=85  Identities=20%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCC-------CcCEEeccCCcCcccCCCCC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-------SLKEFYINNNAITSLPHELG   92 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~   92 (209)
                      ++..|.+    ++|.++.+++..|..+++|++|++++| .++.+++..|....       +|+.|++++|+++.+|..+.
T Consensus       434 ~L~~L~L----s~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          434 NVSSINL----SNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CEEEEEC----CSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             CCCEEEC----cCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence            4555666    889999999888888999999999999 99999888887554       89999999999999887775


Q ss_pred             --CCCCccEEEeeCCCCcc
Q psy14513         93 --DWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        93 --~l~~L~~l~l~~Np~~C  109 (209)
                        .+++|+.|++++|.+..
T Consensus       509 ~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          509 ATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             TTTCTTCCEEECCSSCCSS
T ss_pred             hccCCCcCEEECCCCCCCC
Confidence              89999999999998875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.60  E-value=1.2e-07  Score=76.26  Aligned_cols=72  Identities=26%  Similarity=0.397  Sum_probs=33.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.+  ..|..+++|++|++++| .++.+++  +..+++|+.|++++|.++.++. +..+++|+.|++++|++.
T Consensus       142 ~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          142 GNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             cCCcCCcc--hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence            44444444  23444455555555555 4444443  3444445555555555544432 344444555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.58  E-value=2.3e-08  Score=81.99  Aligned_cols=85  Identities=22%  Similarity=0.285  Sum_probs=68.5

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL   97 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L   97 (209)
                      .++..|.+    ++|.++.++  .|..+++|++|++++| .++.+  ..+..+++|+.|++++|.++..+... ..+++|
T Consensus       243 ~~L~~L~l----~~n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          243 SQLTWLEI----GTNQISDIN--AVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             TTCCEEEC----CSSCCCCCG--GGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             CCCCEEEC----CCCccCCCh--hHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            34555666    889998874  6788999999999999 88887  34677888999999999998866555 788999


Q ss_pred             cEEEeeCCCCccccC
Q psy14513         98 EVLDIQSNPWTCDCS  112 (209)
Q Consensus        98 ~~l~l~~Np~~C~C~  112 (209)
                      +.+++++|++....+
T Consensus       314 ~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP  328 (347)
T ss_dssp             SEEECCSSSCCCCGG
T ss_pred             CEEEccCCccccccC
Confidence            999999999887544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.55  E-value=1.4e-07  Score=83.96  Aligned_cols=78  Identities=19%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|.|+.++    ..+++|+.|++++| .++.++.    .+++|+.|+|++|+++.+|..+..+++|+.
T Consensus       222 ~L~~L~L----s~N~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~  288 (622)
T 3g06_A          222 GLKELIV----SGNRLTSLP----VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETT  288 (622)
T ss_dssp             TCCEEEC----CSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCE
T ss_pred             CCCEEEc----cCCccCcCC----CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCE
Confidence            4555666    888888877    35688999999999 9998877    367899999999999999877788999999


Q ss_pred             EEeeCCCCccc
Q psy14513        100 LDIQSNPWTCD  110 (209)
Q Consensus       100 l~l~~Np~~C~  110 (209)
                      |++++|++.+.
T Consensus       289 L~L~~N~l~~~  299 (622)
T 3g06_A          289 VNLEGNPLSER  299 (622)
T ss_dssp             EECCSCCCCHH
T ss_pred             EEecCCCCCCc
Confidence            99999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.53  E-value=1.1e-07  Score=77.78  Aligned_cols=82  Identities=18%  Similarity=0.244  Sum_probs=69.9

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      ..++..|.+    ++|.++.+++  +..+++|++|++++| .++.+  ..+..+++|+.|++++|+++.++ .+..+++|
T Consensus       220 ~~~L~~L~l----~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L  289 (347)
T 4fmz_A          220 MTRLNSLKI----GNNKITDLSP--LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQL  289 (347)
T ss_dssp             CTTCCEEEC----CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTC
T ss_pred             CCcCCEEEc----cCCccCCCcc--hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCC
Confidence            345566777    8999999887  889999999999999 99987  35777899999999999999884 34788999


Q ss_pred             cEEEeeCCCCcc
Q psy14513         98 EVLDIQSNPWTC  109 (209)
Q Consensus        98 ~~l~l~~Np~~C  109 (209)
                      +.|++++|++..
T Consensus       290 ~~L~L~~n~l~~  301 (347)
T 4fmz_A          290 NSLFLNNNQLGN  301 (347)
T ss_dssp             SEEECCSSCCCG
T ss_pred             CEEECcCCcCCC
Confidence            999999998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.51  E-value=3.3e-07  Score=80.67  Aligned_cols=15  Identities=40%  Similarity=0.510  Sum_probs=5.9

Q ss_pred             CcCEEeccCCcCccc
Q psy14513         73 SLKEFYINNNAITSL   87 (209)
Q Consensus        73 ~L~~L~Ls~N~l~~l   87 (209)
                      +|+.|++++|+++.+
T Consensus       161 ~L~~L~Ls~N~L~~l  175 (571)
T 3cvr_A          161 SLEVLSVRNNQLTFL  175 (571)
T ss_dssp             TCCEEECCSSCCSCC
T ss_pred             CcCEEECCCCCCCCc
Confidence            333344444433333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.51  E-value=1.7e-07  Score=77.28  Aligned_cols=92  Identities=24%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             cccccCCcccccceeccccccccccc-cccCchhhcCCcccce-ecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513         10 RQDISYDTQYTIMKVQLPYSTANSEL-YAIRKNTFKNLLNLQT-LYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL   87 (209)
Q Consensus        10 ~~~~~~~~~~~l~~L~ll~~~s~n~l-~~l~~~~f~~l~~L~~-L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   87 (209)
                      ...|+...|.++..|..| ++++|.+ ..+++++|.+++++++ +++++| .+..+++++|.++++|++|++++|+++.+
T Consensus        42 i~~i~~~~f~~l~~L~~L-~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           42 LRVIQKGAFSGFGDLEKI-EISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             CSEECTTSSTTCTTCCEE-EEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             CCCcCHHHHcCCCCCCEE-ECcCCCCCCccChhHhhcchhhhhhhcccCC-cccccCchhhhhccccccccccccccccC
Confidence            445666666555544443 2266765 4577778888887765 455667 88888888888888888888888888777


Q ss_pred             CCCC-CCCCCccEEEee
Q psy14513         88 PHEL-GDWDSLEVLDIQ  103 (209)
Q Consensus        88 ~~~~-~~l~~L~~l~l~  103 (209)
                      +... .....+..+++.
T Consensus       120 ~~~~~~~~~~l~~l~l~  136 (350)
T 4ay9_X          120 PDVHKIHSLQKVLLDIQ  136 (350)
T ss_dssp             CCCTTCCBSSCEEEEEE
T ss_pred             Cchhhcccchhhhhhhc
Confidence            6544 333334444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.49  E-value=3.4e-07  Score=81.17  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=35.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.|..++  .|..+++|+.|+|++| .++.+  ..+..+++|+.|+|++|+++.+++ +..+++|+.|+|++|++.
T Consensus       117 s~N~l~~l~--~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          117 EHNGISDIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             TTSCCCCCG--GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             cCCCCCCCc--cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence            445555442  2444555555555555 55544  234445555555555555555433 444555555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.49  E-value=1.5e-09  Score=82.60  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=49.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC--CCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.++. .+..+++|++|++++| .++.++  .+..+++|++|++++|+++.++.  .+..+++|+++++++|++.
T Consensus        78 ~~n~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           78 GRNLIKKIEN-LDAVADTLEELWISYN-QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EEEEECSCSS-HHHHHHHCSEEEEEEE-ECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCcccccc-hhhcCCcCCEEECcCC-cCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            4455554432 3333455555555555 555543  24445667778888888777654  2377888999999999998


Q ss_pred             cccCc
Q psy14513        109 CDCSI  113 (209)
Q Consensus       109 C~C~~  113 (209)
                      |.|+.
T Consensus       154 ~~~~~  158 (198)
T 1ds9_A          154 NDYKE  158 (198)
T ss_dssp             HHHHT
T ss_pred             ccccc
Confidence            88764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.47  E-value=2.6e-07  Score=81.83  Aligned_cols=81  Identities=25%  Similarity=0.372  Sum_probs=70.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      +|..|.+    ++|.|+.+  ..|..+++|+.|+|++| .+..+.+  +..+++|+.|+|++|.++.++ .+..+++|+.
T Consensus       132 ~L~~L~L----s~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~  201 (605)
T 1m9s_A          132 QLESLYL----GNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDV  201 (605)
T ss_dssp             TCSEEEC----CSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSE
T ss_pred             ccCEEEC----CCCccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCE
Confidence            3445555    89999998  57889999999999999 9999887  778999999999999999984 4588999999


Q ss_pred             EEeeCCCCccc
Q psy14513        100 LDIQSNPWTCD  110 (209)
Q Consensus       100 l~l~~Np~~C~  110 (209)
                      |+|++|++...
T Consensus       202 L~L~~N~l~~~  212 (605)
T 1m9s_A          202 LELFSQECLNK  212 (605)
T ss_dssp             EECCSEEEECC
T ss_pred             EEccCCcCcCC
Confidence            99999988654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.44  E-value=7e-07  Score=76.41  Aligned_cols=69  Identities=23%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.++.++   |..+++|++|++++| .++.++   |..+++|++|++++|+++.++  +..+++|+.|++++|.+.
T Consensus        72 s~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A           72 TSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             CSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred             cCCcCCeEc---cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc
Confidence            555555553   455555666666666 555542   444555666666666555543  344555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=4.4e-07  Score=74.09  Aligned_cols=82  Identities=17%  Similarity=0.180  Sum_probs=71.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcC-EEeccCCcCcccCCCC-CCCCCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLK-EFYINNNAITSLPHEL-GDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~-~~l~~L   97 (209)
                      ++..+.+    ++|.++.|++++|.++.+|+.+++.+|  +..|++.+|.++.+|+ .+++.+ .++.++... ..+++|
T Consensus       227 ~L~~l~L----~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L  299 (329)
T 3sb4_A          227 NLVSLDI----SKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL  299 (329)
T ss_dssp             TCCEEEC----TTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred             CCeEEEC----CCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence            4566666    788999999999999999999999988  7889999999999999 999988 888888777 889999


Q ss_pred             cEEEeeCCCCc
Q psy14513         98 EVLDIQSNPWT  108 (209)
Q Consensus        98 ~~l~l~~Np~~  108 (209)
                      +.+++.+|.+.
T Consensus       300 ~~l~l~~n~i~  310 (329)
T 3sb4_A          300 RYVLATGDKIT  310 (329)
T ss_dssp             EEEEECSSCCC
T ss_pred             CEEEeCCCccC
Confidence            99999887653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.39  E-value=6.6e-07  Score=76.58  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=68.8

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .+++.|++    ++|.++.++  .|..+++|++|++++| .++.++   +..+++|++|++++|.++.++  +..+++|+
T Consensus        42 ~~L~~L~L----s~n~l~~~~--~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           42 ATLTSLDC----HNSSITDMT--GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLT  109 (457)
T ss_dssp             TTCCEEEC----CSSCCCCCT--TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             CCCCEEEc----cCCCcccCh--hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence            44555666    899999986  6889999999999999 999984   777899999999999999985  67899999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      +|++++|.+..
T Consensus       110 ~L~L~~N~l~~  120 (457)
T 3bz5_A          110 YLNCDTNKLTK  120 (457)
T ss_dssp             EEECCSSCCSC
T ss_pred             EEECCCCcCCe
Confidence            99999998864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.38  E-value=6e-07  Score=76.71  Aligned_cols=80  Identities=23%  Similarity=0.358  Sum_probs=50.9

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|.+..+++  +..+++|+.|++++| .+..+.+  +..+++|+.|++++|+++.++ .+..+++|+.
T Consensus       288 ~L~~L~L----~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~  357 (466)
T 1o6v_A          288 ALTNLEL----NENQLEDISP--ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINW  357 (466)
T ss_dssp             TCSEEEC----CSSCCSCCGG--GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred             ccCeEEc----CCCcccCchh--hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCE
Confidence            3444555    6777777664  566777777777777 7666655  445666777777777666652 2356666666


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      +++++|++..
T Consensus       358 L~l~~n~l~~  367 (466)
T 1o6v_A          358 LSAGHNQISD  367 (466)
T ss_dssp             EECCSSCCCB
T ss_pred             EeCCCCccCc
Confidence            6666666644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.38  E-value=3.5e-07  Score=78.16  Aligned_cols=80  Identities=28%  Similarity=0.398  Sum_probs=62.2

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .+++.|.+    ++|.+..+++  |.++++|++|++++| .+..+++  |..+++|++|++++|.++.++. +..+++|+
T Consensus        68 ~~L~~L~L----s~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~  137 (466)
T 1o6v_A           68 NNLTQINF----SNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN  137 (466)
T ss_dssp             TTCCEEEC----CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred             cCCCEEEC----CCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence            34455555    7888888876  788888888888888 8887776  7778888888888888888764 57788888


Q ss_pred             EEEeeCCCCc
Q psy14513         99 VLDIQSNPWT  108 (209)
Q Consensus        99 ~l~l~~Np~~  108 (209)
                      +|++++|.+.
T Consensus       138 ~L~l~~n~l~  147 (466)
T 1o6v_A          138 RLELSSNTIS  147 (466)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEECCCCccC
Confidence            8888887654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.37  E-value=9.9e-07  Score=78.40  Aligned_cols=88  Identities=20%  Similarity=0.122  Sum_probs=51.2

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA   83 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~   83 (209)
                      .+....|..++    .++..|.+    ++|.|+.++.    .+++|++|+|++| .++.++.    .+++|++|++++|+
T Consensus        50 n~L~~lp~~l~----~~L~~L~L----~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           50 SGLTTLPDCLP----AHITTLVI----PDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNP  112 (622)
T ss_dssp             SCCSCCCSCCC----TTCSEEEE----CSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCC
T ss_pred             CCcCccChhhC----CCCcEEEe----cCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCc
Confidence            33344444443    34555666    7777777765    3567777777777 7776665    24556666666666


Q ss_pred             CcccCCCC-----------------CCCCCccEEEeeCCCCc
Q psy14513         84 ITSLPHEL-----------------GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        84 l~~l~~~~-----------------~~l~~L~~l~l~~Np~~  108 (209)
                      ++.+|...                 ..+++|++|++++|.+.
T Consensus       113 l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          113 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA  154 (622)
T ss_dssp             CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC
Confidence            66554311                 11255666666666654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.31  E-value=2.1e-06  Score=73.38  Aligned_cols=77  Identities=21%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|.++.++  .|.++++|++|++++| .++.++..    ..+|++|++++|+++.+| .+..+++|+.
T Consensus       132 ~L~~L~L----~~n~l~~lp--~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~  199 (454)
T 1jl5_A          132 LLEYLGV----SNNQLEKLP--ELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTA  199 (454)
T ss_dssp             TCCEEEC----CSSCCSSCC--CCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             CCCEEEC----cCCCCCCCc--ccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCE
Confidence            4455555    777777766  4777888888888888 77776543    246777777777777765 4566677777


Q ss_pred             EEeeCCCCc
Q psy14513        100 LDIQSNPWT  108 (209)
Q Consensus       100 l~l~~Np~~  108 (209)
                      +++++|.+.
T Consensus       200 L~l~~N~l~  208 (454)
T 1jl5_A          200 IYADNNSLK  208 (454)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCcCC
Confidence            777776654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.27  E-value=3.1e-08  Score=75.12  Aligned_cols=64  Identities=23%  Similarity=0.173  Sum_probs=37.1

Q ss_pred             hhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        42 ~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      .|..+++|++|++++| .++.++  .|..+++|+.|++++|.++.+|.....+++|+.|++++|.+.
T Consensus        43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~  106 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred             HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC
Confidence            5556666666666666 666654  444555666666666666655543344455666666665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.27  E-value=3.2e-06  Score=72.27  Aligned_cols=76  Identities=24%  Similarity=0.328  Sum_probs=39.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|.++.++  .|.++++|++|++++| .++.++..    ..+|+.|++++|.++.+| .+..+++|+.
T Consensus       174 ~L~~L~L----~~n~l~~l~--~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~lp-~~~~l~~L~~  241 (454)
T 1jl5_A          174 SLEFIAA----GNNQLEELP--ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEELP-ELQNLPFLTT  241 (454)
T ss_dssp             TCCEEEC----CSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             cccEEEC----cCCcCCcCc--cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCccc-ccCCCCCCCE
Confidence            4444555    666666654  3566666666666666 66554332    124445555555554444 2344444555


Q ss_pred             EEeeCCCC
Q psy14513        100 LDIQSNPW  107 (209)
Q Consensus       100 l~l~~Np~  107 (209)
                      +++++|.+
T Consensus       242 L~l~~N~l  249 (454)
T 1jl5_A          242 IYADNNLL  249 (454)
T ss_dssp             EECCSSCC
T ss_pred             EECCCCcC
Confidence            55554444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.25  E-value=2.4e-07  Score=76.69  Aligned_cols=84  Identities=19%  Similarity=0.288  Sum_probs=57.8

Q ss_pred             cceeccccccccccccccCc----hhhcCCc-ccceecccccccccccCccccCCC-----CCcCEEeccCCcCcccCCC
Q psy14513         21 IMKVQLPYSTANSELYAIRK----NTFKNLL-NLQTLYCNFNPKLTFIHPYSFNND-----WSLKEFYINNNAITSLPHE   90 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~----~~f~~l~-~L~~L~Ls~n~~l~~i~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~   90 (209)
                      ++.|++    ++|.++.++.    .+|.+++ +|++|+|++| .++...+..|...     ++|+.|+|++|.++.....
T Consensus        24 L~~L~L----s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           24 VTSLDL----SLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CCEEEC----TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             ceEEEc----cCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            555666    7788888777    7777777 7888888888 7777776665553     6777888888877765433


Q ss_pred             -----CCCC-CCccEEEeeCCCCcc
Q psy14513         91 -----LGDW-DSLEVLDIQSNPWTC  109 (209)
Q Consensus        91 -----~~~l-~~L~~l~l~~Np~~C  109 (209)
                           +..+ ++|+.|++++|.+.-
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCc
Confidence                 1223 567777777776643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=2.2e-06  Score=69.92  Aligned_cols=89  Identities=21%  Similarity=0.091  Sum_probs=75.5

Q ss_pred             CcccccCCcccccceeccccccccccccccCchhhcCCcccc-eecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513          9 SRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQ-TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL   87 (209)
Q Consensus         9 ~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~-~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l   87 (209)
                      ....|+...|.+...|..+.+ .+| +..|++++|.++.+|+ .+++.+  .++.|++.+|.++.+|+.+++++|.++.+
T Consensus       237 ~i~~I~~~aF~~~~~L~~l~l-~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I  312 (329)
T 3sb4_A          237 NATTIPDFTFAQKKYLLKIKL-PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTL  312 (329)
T ss_dssp             CCCEECTTTTTTCTTCCEEEC-CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred             CcceecHhhhhCCCCCCEEEC-Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence            366778888877666555433 444 9999999999999999 999987  57899999999999999999999999999


Q ss_pred             CCCC-CCCCCccEEE
Q psy14513         88 PHEL-GDWDSLEVLD  101 (209)
Q Consensus        88 ~~~~-~~l~~L~~l~  101 (209)
                      +... ..+++|+.+.
T Consensus       313 ~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          313 GDELFGNGVPSKLIY  327 (329)
T ss_dssp             CTTTTCTTCCCCEEE
T ss_pred             chhhhcCCcchhhhc
Confidence            9877 8899998875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=2.3e-07  Score=73.99  Aligned_cols=78  Identities=18%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             ccccccccC---chhhcCCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCCCC---CCCCCccEEEe
Q psy14513         31 ANSELYAIR---KNTFKNLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPHEL---GDWDSLEVLDI  102 (209)
Q Consensus        31 s~n~l~~l~---~~~f~~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~---~~l~~L~~l~l  102 (209)
                      +.|....++   +-...++++|+.|+|++| .|+.+++  ..+..+++|+.|+|++|+++++.. +   ..+ .|+.|++
T Consensus       151 ~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L  227 (267)
T 3rw6_A          151 VLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWL  227 (267)
T ss_dssp             CTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEEC
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEc
Confidence            556444333   334467899999999999 9999875  455568999999999999998732 2   334 8999999


Q ss_pred             eCCCCcccc
Q psy14513        103 QSNPWTCDC  111 (209)
Q Consensus       103 ~~Np~~C~C  111 (209)
                      .+||+.-..
T Consensus       228 ~~Npl~~~~  236 (267)
T 3rw6_A          228 DGNSLCDTF  236 (267)
T ss_dssp             TTSTTGGGC
T ss_pred             cCCcCcccc
Confidence            999986543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.09  E-value=3.7e-07  Score=76.02  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=64.9

Q ss_pred             ccceecccccccccccc----ccCchhhcCCcccceecccccccccccC----cccc--CCCCCcCEEeccCCcCcc---
Q psy14513         20 TIMKVQLPYSTANSELY----AIRKNTFKNLLNLQTLYCNFNPKLTFIH----PYSF--NNDWSLKEFYINNNAITS---   86 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~----~l~~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f--~~l~~L~~L~Ls~N~l~~---   86 (209)
                      +|..|.+    ++|.++    ...+..|..+++|++|+|++| .++...    +..+  ..+++|+.|+|++|.++.   
T Consensus       217 ~L~~L~L----s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~  291 (386)
T 2ca6_A          217 ELKVLDL----QDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  291 (386)
T ss_dssp             TCCEEEC----CSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             CccEEEC----cCCCCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence            3444555    777774    223346677788888888888 776652    2233  226778888888888887   


Q ss_pred             --cCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHH
Q psy14513         87 --LPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYV  120 (209)
Q Consensus        87 --l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~  120 (209)
                        ++..+ ..+++|+.|++++|++.+... ...+...+
T Consensus       292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l  329 (386)
T 2ca6_A          292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF  329 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence              66666 667888999999999887765 34444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.98  E-value=1.2e-06  Score=71.23  Aligned_cols=82  Identities=15%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             cccceecccccccccccccc-CchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCcc--cCCCCCCC
Q psy14513         19 YTIMKVQLPYSTANSELYAI-RKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITS--LPHELGDW   94 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l-~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~--l~~~~~~l   94 (209)
                      .++..|.+    ++|.+... .+..+..+++|++|++++| .++...+..+..+++|++|++++| .++.  ++..+..+
T Consensus        93 ~~L~~L~L----~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           93 FRVQHMDL----SNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             BCCCEEEC----TTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEEc----cCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            34455555    67777654 4556777888888888888 777665666666777888888877 5653  33323556


Q ss_pred             CCccEEEeeCC
Q psy14513         95 DSLEVLDIQSN  105 (209)
Q Consensus        95 ~~L~~l~l~~N  105 (209)
                      ++|++|++++|
T Consensus       168 ~~L~~L~l~~~  178 (336)
T 2ast_B          168 SRLDELNLSWC  178 (336)
T ss_dssp             TTCCEEECCCC
T ss_pred             CCCCEEcCCCC
Confidence            66777777766

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.82  E-value=3.4e-06  Score=69.69  Aligned_cols=78  Identities=13%  Similarity=0.040  Sum_probs=65.9

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCc----cccCCCC-CcCEEeccCCcCcccCCCC-CC-----CCCccE
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDW-SLKEFYINNNAITSLPHEL-GD-----WDSLEV   99 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~-~L~~L~Ls~N~l~~l~~~~-~~-----l~~L~~   99 (209)
                      +.|.++...+..+....+|++|++++| .++.+++    .+|..++ +|+.|+|++|+++...... ..     .++|+.
T Consensus         6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            6 TLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             ccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            889999888877777777999999999 9999998    7888888 8999999999999864332 33     389999


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      |++++|.+.-
T Consensus        85 L~Ls~n~l~~   94 (362)
T 3goz_A           85 LNLSGNFLSY   94 (362)
T ss_dssp             EECCSSCGGG
T ss_pred             EECcCCcCCh
Confidence            9999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=4e-06  Score=66.84  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             cccceeccccccccccccccCc--hhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcc-cCC-----
Q psy14513         19 YTIMKVQLPYSTANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITS-LPH-----   89 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~-l~~-----   89 (209)
                      -+|..|.+    ++|.|+.+++  ..+..+++|+.|+|++| .++.+.. +.+.++ +|+.|+|++|.+.. +|.     
T Consensus       170 ~~L~~L~L----s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          170 PELLSLNL----SNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             TTCCEEEC----TTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred             CCCCEEEC----CCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence            34556666    9999999874  67778999999999999 9998833 445544 89999999999986 442     


Q ss_pred             -CC-CCCCCccEEE
Q psy14513         90 -EL-GDWDSLEVLD  101 (209)
Q Consensus        90 -~~-~~l~~L~~l~  101 (209)
                       .+ ..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             12 5677777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.77  E-value=6.2e-06  Score=68.55  Aligned_cols=65  Identities=22%  Similarity=0.226  Sum_probs=32.1

Q ss_pred             hhcCCcccceecccccccccc-----cCccccCCCCCcCEEeccCCcCc-----ccCCCCCCCCCccEEEeeCCCC
Q psy14513         42 TFKNLLNLQTLYCNFNPKLTF-----IHPYSFNNDWSLKEFYINNNAIT-----SLPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        42 ~f~~l~~L~~L~Ls~n~~l~~-----i~~~~f~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      .|..+++|++|++++| .++.     +.+..+..+++|+.|+|++|.++     .++..+..+++|+.|++++|.+
T Consensus       182 ~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            4445555555555555 5541     22223444555555555555552     2343334455555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.68  E-value=3.4e-06  Score=71.45  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=16.3

Q ss_pred             CcCEEeccCCcCc-----ccCCCCCCCCCccEEEeeCCCCc
Q psy14513         73 SLKEFYINNNAIT-----SLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        73 ~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      +|+.|++++|.++     .++..+..+++|+.+++++|++.
T Consensus       371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            4455555555444     23322233444555555555444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.67  E-value=0.0001  Score=61.91  Aligned_cols=71  Identities=24%  Similarity=0.307  Sum_probs=41.2

Q ss_pred             ccccccCchhhcCCcccceeccccccccc-----ccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLT-----FIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~-----~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      +.++.|+..+|.++.+|+.+.+.+| .+.     .|+..+|.++.+|+.+++. +.++.++... ..+.+|+.+.+..|
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence            4455566666666666666666555 444     4666666666666666665 3455555555 55566666666443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.59  E-value=1.6e-05  Score=64.50  Aligned_cols=81  Identities=9%  Similarity=0.086  Sum_probs=63.9

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceeccccccccccc-CccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL   97 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L   97 (209)
                      .+..|.+    ++|.+....+..+ .+++|++|++++| .++.. .+..+..+++|++|++++|.++. .+..+..+++|
T Consensus        71 ~l~~L~l----~~n~l~~~~~~~~-~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L  144 (336)
T 2ast_B           71 GVIAFRC----PRSFMDQPLAEHF-SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL  144 (336)
T ss_dssp             TCSEEEC----TTCEECSCCCSCC-CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred             cceEEEc----CCccccccchhhc-cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence            3455666    8899988877654 6899999999999 87754 45567778999999999999885 44444679999


Q ss_pred             cEEEeeCCC
Q psy14513         98 EVLDIQSNP  106 (209)
Q Consensus        98 ~~l~l~~Np  106 (209)
                      ++|++++|.
T Consensus       145 ~~L~L~~~~  153 (336)
T 2ast_B          145 VRLNLSGCS  153 (336)
T ss_dssp             SEEECTTCB
T ss_pred             CEEECCCCC
Confidence            999999983

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.59  E-value=7.1e-06  Score=68.38  Aligned_cols=84  Identities=15%  Similarity=0.086  Sum_probs=53.0

Q ss_pred             ccceeccccccccccccccCchhh-----cCCcccceecccccccccccCccc----cCCCCCcCEEeccCCcCccc---
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTF-----KNLLNLQTLYCNFNPKLTFIHPYS----FNNDWSLKEFYINNNAITSL---   87 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f-----~~l~~L~~L~Ls~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~l---   87 (209)
                      ++..|++    ++|.|+......+     ...++|++|+|++| .++......    +...++|++|+|++|.++..   
T Consensus       127 ~L~~L~L----s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~  201 (372)
T 3un9_A          127 RARKLGL----QLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE  201 (372)
T ss_dssp             TEEEEEC----CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred             hccHhhc----CCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence            3455665    7788776655544     24567888888888 776533322    24466788888888877642   


Q ss_pred             --CCCCCCCCCccEEEeeCCCCc
Q psy14513         88 --PHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        88 --~~~~~~l~~L~~l~l~~Np~~  108 (209)
                        ...+...++|+.|++++|.+.
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHhcCCCcCeEECCCCCCC
Confidence              222234557788888877764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.57  E-value=0.00017  Score=60.62  Aligned_cols=93  Identities=9%  Similarity=0.109  Sum_probs=71.4

Q ss_pred             cccccCCcccccceecccccccccccc-----ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513         10 RQDISYDTQYTIMKVQLPYSTANSELY-----AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus        10 ~~~~~~~~~~~l~~L~ll~~~s~n~l~-----~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      ...|....|.....|..+.+ .+|.+.     .+++++|.++.+|+.+++. + .++.|...+|.++.+|+.++|..| +
T Consensus       259 i~~I~~~aF~~c~~L~~l~l-~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~-~i~~I~~~aF~~c~~L~~l~lp~~-l  334 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTT-YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E-SIRILGQGLLGGNRKVTQLTIPAN-V  334 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEE-ESSCCCCCTTCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred             ccEEChhHhhCCCCCCEEEe-CCccccCCcccEECHHHhhCCccCCeEEeC-C-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence            44566666665554444322 444444     7999999999999999998 6 689999999999999999999654 8


Q ss_pred             cccCCCC-CCCCCccEEEeeCCCC
Q psy14513         85 TSLPHEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        85 ~~l~~~~-~~l~~L~~l~l~~Np~  107 (209)
                      +.+.... ..+ +|+.+.+.+|..
T Consensus       335 ~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          335 TQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             CEECTTSSSSS-CCCEEEECCSSC
T ss_pred             cEEcHHhCCCC-CCCEEEEcCCCC
Confidence            8887776 777 999999988754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.54  E-value=8.7e-05  Score=52.49  Aligned_cols=50  Identities=16%  Similarity=0.101  Sum_probs=37.4

Q ss_pred             cccccc--ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513         31 ANSELY--AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus        31 s~n~l~--~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +++.++  .+|.+.   -.+|++|+|++| .|+.++++.|..+++|+.|+|++|.+
T Consensus        16 s~~~L~~~~vP~~l---p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           16 GRRGLTWASLPTAF---PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSSCCCTTTSCSCC---CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCCCccccCCCCC---CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence            677777  676542   235778888888 88888888888888888888888865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.52  E-value=1.2e-05  Score=67.98  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=19.7

Q ss_pred             hhcCCcccceecccccccccccC-----ccccCCCCCcCEEeccCCcCcc
Q psy14513         42 TFKNLLNLQTLYCNFNPKLTFIH-----PYSFNNDWSLKEFYINNNAITS   86 (209)
Q Consensus        42 ~f~~l~~L~~L~Ls~n~~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~   86 (209)
                      .+..+++|++|++++| .++...     +..+..+++|+.|++++|.++.
T Consensus       222 ~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          222 IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            3344455555555555 444321     2222224445555555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.20  E-value=4.9e-05  Score=63.27  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=46.1

Q ss_pred             ccceeccccccccccccccCchhh-cCCcccceecccccccccccCcccc-----CCCCCcCEEeccCCcCcc-----cC
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTF-KNLLNLQTLYCNFNPKLTFIHPYSF-----NNDWSLKEFYINNNAITS-----LP   88 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f-~~l~~L~~L~Ls~n~~l~~i~~~~f-----~~l~~L~~L~Ls~N~l~~-----l~   88 (209)
                      ++..|++    ++|.|+......+ ..+.+|++|+|++| .++......+     ....+|+.|+|++|.++.     +.
T Consensus       102 ~L~~L~L----s~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          102 ALDEVNL----ASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             CEEEEEC----TTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CceEEEe----cCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            3445555    6666655433222 23556777777777 6655433332     223557777777777654     21


Q ss_pred             CCCCCCCCccEEEeeCCCCc
Q psy14513         89 HELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        89 ~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ..+...++|++|+|++|.+.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCH
T ss_pred             HHHhcCCCcCEEeCCCCCCC
Confidence            11234566777777777654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.14  E-value=0.00083  Score=55.89  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      +.+..|.+.+|.++.+|+.+++. + .++.|...+|.++.+|+.+++..| ++.+.... ..+.+|+.+.+..+
T Consensus       306 ~~i~~I~~~aF~~c~~L~~i~lp-~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          306 DSVKFIGEEAFESCTSLVSIDLP-Y-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             cccceechhhhcCCCCCCEEEeC-C-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            56888999999999999999996 4 588899999999999999999876 88888777 88899999988654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.07  E-value=0.0011  Score=55.10  Aligned_cols=70  Identities=16%  Similarity=0.273  Sum_probs=48.3

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      +.+..|+..+|.++.+|+.+++.++  ++.|...+|.++.+|+.+.+..+ ++.+.... ..+.+|+.+++.+|
T Consensus       297 ~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          297 SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            5667777777777777777777543  66777777777777777777543 66666555 66777777777665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.02  E-value=0.00092  Score=55.15  Aligned_cols=70  Identities=19%  Similarity=0.182  Sum_probs=47.4

Q ss_pred             cccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513         34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN  105 (209)
Q Consensus        34 ~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N  105 (209)
                      .++.+...+|.+..+|+.+.+..  .+..++..+|.++.+|+.+.+.++.++.++... ..+.+|+.+.+..+
T Consensus       250 ~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          250 NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             CccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence            46677777777777777776643  456677777777777777777777777776655 66667777766443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.81  E-value=0.00036  Score=51.92  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CcccccCC--cccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCC----CCcCEEeccCC
Q psy14513          9 SRQDISYD--TQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNND----WSLKEFYINNN   82 (209)
Q Consensus         9 ~~~~~~~~--~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l----~~L~~L~Ls~N   82 (209)
                      +...+|..  ....+..|++    +++.|+...-..+.++++|++|+|++++.++.-.-.....+    ++|++|+|+++
T Consensus        49 ~~~~LP~~~~~~~~L~~LDL----s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           49 DYNHLPTGPLDKYKIQAIDA----TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CGGGSCCCSTTCCCEEEEEE----ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ccccCCcccCCCceEeEEeC----cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            34455543  3456677777    88888887767778999999999999944544333333332    36999999997


Q ss_pred             c-Ccc--cCCCCCCCCCccEEEeeCCCC
Q psy14513         83 A-ITS--LPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        83 ~-l~~--l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      . ++-  +. .+..+++|+.|++++.|-
T Consensus       125 ~~ITD~Gl~-~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          125 GNVTDKGII-ALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             TTCCHHHHH-HGGGCTTCCEEEEESCTT
T ss_pred             CcCCHHHHH-HHhcCCCCCEEECCCCCC
Confidence            4 654  21 125689999999987543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.48  E-value=0.00024  Score=53.11  Aligned_cols=86  Identities=20%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             ccceeccccccccc-cccccC----chhhcCCcccceecccccccccccCc----cccCCCCCcCEEeccCCcCcc----
Q psy14513         20 TIMKVQLPYSTANS-ELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDWSLKEFYINNNAITS----   86 (209)
Q Consensus        20 ~l~~L~ll~~~s~n-~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~----   86 (209)
                      ++..|.+    ++| .|....    ...+...++|++|+|++| .+..-..    .++....+|++|+|++|.++.    
T Consensus        37 ~L~~L~L----~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           37 DLEEVNL----NNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TCCEEEC----TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCEEEe----cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            4556666    788 887643    344556788999999999 7765322    223335679999999999876    


Q ss_pred             -cCCCCCCCCCccEEEe--eCCCCccc
Q psy14513         87 -LPHELGDWDSLEVLDI--QSNPWTCD  110 (209)
Q Consensus        87 -l~~~~~~l~~L~~l~l--~~Np~~C~  110 (209)
                       +...+...++|++|++  ++|.+..+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence             2333355678999999  78888654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.41  E-value=0.00037  Score=52.02  Aligned_cols=70  Identities=19%  Similarity=0.150  Sum_probs=43.5

Q ss_pred             chhhcCCcccceecccccccccccC----ccccCCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCCCCcc
Q psy14513         40 KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFNNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        40 ~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      ...+...++|++|+|++|+.+..-.    ..++....+|++|+|++|.++.     +...+...++|++|+|++|.+.-
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4456667788888888873343311    1223445678888888888764     11112344678888888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.29  E-value=0.0004  Score=60.46  Aligned_cols=73  Identities=11%  Similarity=-0.012  Sum_probs=50.5

Q ss_pred             cccccCchhhcC-CcccceecccccccccccCcccc-CCCCCcCEEeccCCcCcccC-CCC-CCCCCccEEEeeCCCC
Q psy14513         34 ELYAIRKNTFKN-LLNLQTLYCNFNPKLTFIHPYSF-NNDWSLKEFYINNNAITSLP-HEL-GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        34 ~l~~l~~~~f~~-l~~L~~L~Ls~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~l~-~~~-~~l~~L~~l~l~~Np~  107 (209)
                      .++......+.. +++|+.|++++| .++......+ .++++|+.|++++|.++... ... ..+++|+.|++++|+.
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            444443333333 778999999999 7755444333 44788999999999985422 223 6688999999999887

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.19  E-value=0.012  Score=48.25  Aligned_cols=68  Identities=9%  Similarity=0.129  Sum_probs=43.8

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEe
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDI  102 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l  102 (209)
                      +.+..++..+|.++.+|+.+.+.++ .++.|+..+|.++.+|+.+.|..+ ++.+.... ..+.+|+.+.+
T Consensus       272 ~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          272 AKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             ccceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            4566666677777777777777666 677777777776677777776543 55565544 55556655544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.71  E-value=0.0074  Score=50.06  Aligned_cols=64  Identities=13%  Similarity=0.193  Sum_probs=44.5

Q ss_pred             cccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEE
Q psy14513         34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVL  100 (209)
Q Consensus        34 ~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l  100 (209)
                      +++.|...+|.++.+|+.+.+. + .++.|...+|.++.+|+.+++.++ ++.+.... ..+..|+.+
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp-~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i  122 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIP-S-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI  122 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECC-T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred             eEeEhHHHHhhCCCCceEEEeC-C-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence            5677788888888888888775 4 477788888887788888887654 56665544 555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.67  E-value=0.0011  Score=57.62  Aligned_cols=62  Identities=10%  Similarity=0.024  Sum_probs=32.3

Q ss_pred             CCcccceecccccccccccCcc----ccCCCCCcCEEeccCCcCcccC-----CCCCCCCCccEEEeeCCCC
Q psy14513         45 NLLNLQTLYCNFNPKLTFIHPY----SFNNDWSLKEFYINNNAITSLP-----HELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        45 ~l~~L~~L~Ls~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~l~l~~Np~  107 (209)
                      ++++|++|+|++| .+......    .+..+++|+.|++++|.++.+.     .....+++|+.|++++|.+
T Consensus       162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~  232 (592)
T 3ogk_B          162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI  232 (592)
T ss_dssp             HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred             hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence            5566666666666 55433221    2223455666666666665221     1113456666666666443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.66  E-value=0.035  Score=45.94  Aligned_cols=69  Identities=25%  Similarity=0.301  Sum_probs=40.6

Q ss_pred             ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeC
Q psy14513         33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQS  104 (209)
Q Consensus        33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~  104 (209)
                      +.+..+...+|.++..|+.+.+. + .+..|+..+|.++.+|+.+++..+ ++.+.... ..+.+|+.+.+..
T Consensus       274 ~~~~~I~~~aF~~c~~L~~i~l~-~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          274 DSVVSIGTGAFMNCPALQDIEFS-S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECC-T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             cccceecCcccccccccccccCC-C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            34445566666666666666663 3 456666666666666666666543 55555544 5566666666643

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.27  E-value=0.0037  Score=54.28  Aligned_cols=83  Identities=12%  Similarity=0.091  Sum_probs=40.4

Q ss_pred             ccceeccccccccccccccCchhhc-CCcccceeccccccccccc-CccccCCCCCcCEEeccCCcCcccCC----CC-C
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFK-NLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITSLPH----EL-G   92 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~-~l~~L~~L~Ls~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~-~   92 (209)
                      ++..|.+    ++|.++......+. .+++|++|++++|..++.. .+..+..+++|++|++++|.++....    .+ .
T Consensus       106 ~L~~L~L----~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          106 WLEEIRL----KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TCCEEEE----ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCeEEe----eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            3444555    55655554444443 4566666666666223221 11122235666666666666443211    11 3


Q ss_pred             CCCCccEEEeeCCC
Q psy14513         93 DWDSLEVLDIQSNP  106 (209)
Q Consensus        93 ~l~~L~~l~l~~Np  106 (209)
                      .+++|+.|++++|.
T Consensus       182 ~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          182 TYTSLVSLNISCLA  195 (594)
T ss_dssp             TCCCCCEEECTTCC
T ss_pred             cCCcCcEEEecccC
Confidence            44556666665543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.03  E-value=0.018  Score=49.89  Aligned_cols=39  Identities=10%  Similarity=0.069  Sum_probs=22.8

Q ss_pred             ccceeccccccccccccccCc----hhhcCCcccceeccccccccccc
Q psy14513         20 TIMKVQLPYSTANSELYAIRK----NTFKNLLNLQTLYCNFNPKLTFI   63 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~----~~f~~l~~L~~L~Ls~n~~l~~i   63 (209)
                      +|..|.+    ++|.++.+..    ..+.++++|+.|++++| .+..+
T Consensus       193 ~L~~L~L----~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l  235 (592)
T 3ogk_B          193 SLEVLNF----YMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL  235 (592)
T ss_dssp             CCCEEEC----TTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG
T ss_pred             CccEEEe----eccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH
Confidence            4455555    6677763332    23345677777777777 65543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.31  E-value=0.22  Score=33.04  Aligned_cols=54  Identities=9%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS   86 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~   86 (209)
                      .+..++.|...+|.++.+|+.+.+-.+  ++.|...+|.+..+|+.+.+.+.....
T Consensus         4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~P~~   57 (100)
T 2lz0_A            4 EGEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGEDPSA   57 (100)
T ss_dssp             CCCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSCGGG
T ss_pred             CCCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCCCCe
Confidence            357889999999999999999988765  688999999999999999887655433

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=92.70  E-value=0.012  Score=48.72  Aligned_cols=37  Identities=19%  Similarity=0.074  Sum_probs=19.5

Q ss_pred             CCCcCEEeccCCcCcc-cCCCC---CCCCCccEEEeeCCCC
Q psy14513         71 DWSLKEFYINNNAITS-LPHEL---GDWDSLEVLDIQSNPW  107 (209)
Q Consensus        71 l~~L~~L~Ls~N~l~~-l~~~~---~~l~~L~~l~l~~Np~  107 (209)
                      .++|++|+|++|.++. ....+   ..+++|+.|+|+.|.+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            4556666666666543 11111   2355666666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=90.83  E-value=0.071  Score=43.98  Aligned_cols=63  Identities=14%  Similarity=0.071  Sum_probs=45.6

Q ss_pred             CCcccceecccccccccccCccc-c--CCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCCCCc
Q psy14513         45 NLLNLQTLYCNFNPKLTFIHPYS-F--NNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        45 ~l~~L~~L~Ls~n~~l~~i~~~~-f--~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ..++|+.|+|.+| .+..-...+ +  ..+++|+.|+|+.|.++.     +...+..+++|+.|+++.|++.
T Consensus       250 ~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4689999999999 766321111 1  236789999999999876     3333346789999999988654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=90.55  E-value=0.093  Score=39.51  Aligned_cols=64  Identities=11%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             hhhcCCcccceecccccccccccCcccc----CCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCC
Q psy14513         41 NTFKNLLNLQTLYCNFNPKLTFIHPYSF----NNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSN  105 (209)
Q Consensus        41 ~~f~~l~~L~~L~Ls~n~~l~~i~~~~f----~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~N  105 (209)
                      .++..-+.|+.|+|++| .|..-...++    .....|+.|+|++|.++.     +-..+..-..|+.|+|++|
T Consensus        64 ~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            34445566777777777 6654333222    234557777777777764     1112233345777777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=88.87  E-value=0.097  Score=38.68  Aligned_cols=59  Identities=12%  Similarity=0.007  Sum_probs=41.2

Q ss_pred             cccceecccccccccccCccccCCCCCcCEEeccCCc-CcccCC-CCCCC----CCccEEEeeCCC
Q psy14513         47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPH-ELGDW----DSLEVLDIQSNP  106 (209)
Q Consensus        47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~l----~~L~~l~l~~Np  106 (209)
                      -.|++||++++ .++...-..+.++++|+.|+|+++. ++---- .+..+    ++|++|+|++++
T Consensus        61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            36899999999 7777666666778889999999885 442110 11222    478999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-08
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-10
 Identities = 14/77 (18%), Positives = 26/77 (33%)

Query: 48  NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107
                    N  LT +     N   +L    +  N++ ++P        L    +  NPW
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

Query: 108 TCDCSIQWLIDYVAKRQ 124
            C+C I +   ++    
Sbjct: 208 LCNCEILYFRRWLQDNA 224

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 7e-08
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 35  LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
           + ++ +  F+ L +L  L  + N           +    +  +   NN        L   
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 95  DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
            +L+ L +  NPW CDC  + L  ++ K + +    +  + CS P + +   L  
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGS----SSEVPCSLPQRLAGRDLKR 275

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-06
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 3/118 (2%)

Query: 32  NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
              L  +     + L  L+ L    +                     ++ NA+ SL  + 
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL-SRLNLSFNALESLSWKT 99

Query: 92  GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
               SL+ L +  NP  C C+++WL  +  +     PE    L C      +++   S
Sbjct: 100 VQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPE--QKLQCHGQGPLAHMPNAS 155

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 8/61 (13%), Positives = 17/61 (27%)

Query: 49  LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
                   N ++    P        L    ++ N +     + G+    +V    +N   
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

Query: 109 C 109
           C
Sbjct: 305 C 305

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.09
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.02
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.5
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.32
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.16
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.07
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.77
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.96
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	95.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	92.77
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.07

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.7e-23  Score=150.07  Aligned_cols=135  Identities=19%  Similarity=0.299  Sum_probs=110.4

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA   83 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~   83 (209)
                      ++....|..++..+  ++..|.+   .++|.|+.+++++|.++++|+.|++++| +|+.|++++|.++++|++|+|++|+
T Consensus        18 ~~~~~~p~~l~~l~--~l~~L~l---~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          18 DGALDSLHHLPGAE--NLTELYI---ENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             SCCCTTTTTSCSCS--CCSEEEC---CSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             CCCccCcccccCcc--ccCeeec---CCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCCC
Confidence            44455666665543  3345555   2345699999999999999999999999 9999999999999999999999999


Q ss_pred             CcccCCCCCCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcc
Q psy14513         84 ITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVH  146 (209)
Q Consensus        84 l~~l~~~~~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~  146 (209)
                      ++++|........|+.|+|++|||.|||++.|+..|+......  .....+.|.+|..++|.+
T Consensus        92 l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~--~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          92 LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG--VPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSS--CGGGCCCCSSSSCSSCCC
T ss_pred             CcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCc--cCcCCcEECcChHHCcCC
Confidence            9999998844447999999999999999999999999543332  234679999999888854

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.88  E-value=1.6e-22  Score=153.00  Aligned_cols=126  Identities=24%  Similarity=0.424  Sum_probs=113.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.+..++++.|..+++|++|+|++| +++.+++++|.++++|++|+|++|+|++++++. ..+++|+++++++|||.|
T Consensus        62 ~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          62 KRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccccccccccccccceeeeccc-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            889999999999999999999999999 999999999999999999999999999998887 899999999999999999


Q ss_pred             ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCc
Q psy14513        110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGA  164 (209)
Q Consensus       110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~  164 (209)
                      +|++.|+..|+.....    ....++|..|..++|..+.++..   +++.|..+.
T Consensus       141 ~~~~~~~~~~l~~~~l----~~~~~~c~~p~~l~~~~l~~L~~---n~l~C~~~~  188 (192)
T d1w8aa_         141 NCHLAWFAEWLRKKSL----NGGAARCGAPSKVRDVQIKDLPH---SEFKCSSEN  188 (192)
T ss_dssp             SGGGHHHHHHHHHHCC----SGGGCBBCSSTTTTTSBGGGSCT---TTCCCCCC-
T ss_pred             ccchHHHhhhhhhhcc----cCCCeEeCCChhhcCCEeeecCH---hhCcCCCCC
Confidence            9999999999844332    23568999999999999999987   888997653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.4e-20  Score=146.55  Aligned_cols=123  Identities=24%  Similarity=0.499  Sum_probs=110.0

Q ss_pred             cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccE
Q psy14513         21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEV   99 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~   99 (209)
                      +..|.+    ++|+++.+++.+|.++++|+++++++| .+..+.+..|.++++|++|++++|++.++++.. ..+++|++
T Consensus       155 L~~L~l----~~N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         155 LTHLFL----HGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             CCEEEC----CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             hhhccc----ccCcccccchhhhccccccchhhhhhc-cccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            445555    899999999999999999999999999 999999999999999999999999999988766 88999999


Q ss_pred             EEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513        100 LDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL  152 (209)
Q Consensus       100 l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~  152 (209)
                      +++++|||.|||++.|+..|+++....    ...+.|+.|..++|+++.++..
T Consensus       230 L~l~~N~l~C~C~~~~l~~~l~~~~~~----~~~~~C~~p~~l~g~~l~~l~~  278 (284)
T d1ozna_         230 LRLNDNPWVCDCRARPLWAWLQKFRGS----SSEVPCSLPQRLAGRDLKRLAA  278 (284)
T ss_dssp             EECCSSCEECSGGGHHHHHHHHHCCSE----ECCCBEEESGGGTTCBGGGSCG
T ss_pred             EEecCCCCCCCccchHHHHHHHhCcCC----CCceEeCCchHHcCCccccCCH
Confidence            999999999999999999999654332    3568999999999999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.7e-19  Score=139.08  Aligned_cols=91  Identities=20%  Similarity=0.349  Sum_probs=87.1

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      ++|.+..+++..|..+++++.+++++| +++.++++.|..+++|++|+|++|+++++|.++..+++|+.++|++|||.||
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccccceeccccccccccchhcccccc-cccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            789999999999999999999999999 9999999999999999999999999999999888899999999999999999


Q ss_pred             cCcHhHHHHHHh
Q psy14513        111 CSIQWLIDYVAK  122 (209)
Q Consensus       111 C~~~~~~~~~~~  122 (209)
                      |++.|+..|+++
T Consensus       211 C~~~~l~~wl~~  222 (266)
T d1p9ag_         211 CEILYFRRWLQD  222 (266)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             cchHHHHHHHHh
Confidence            999999999943

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.45  E-value=1.4e-13  Score=102.98  Aligned_cols=99  Identities=23%  Similarity=0.340  Sum_probs=87.4

Q ss_pred             CCCCCCCCcccccCCcccccceeccccccccccccc-cCchhhcCCcccceecccccccccccCccccCCCCCcCEEecc
Q psy14513          2 TSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYA-IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYIN   80 (209)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~-l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls   80 (209)
                      ++++....|+++|.+    ++.|.+    ++|.|+. ++...|.++++|++|+|++| .+..++++.|..+++|+.|+|+
T Consensus        16 s~~~L~~iP~~lp~~----l~~L~L----s~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          16 TGRGLKEIPRDIPLH----TTELLL----NDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTSCCSSCCSCCCTT----CSEEEC----CSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred             eCCCcCccCCCCCCC----CCEEEe----CCCCCcccccccccCCCceEeeeecccc-ccccccccccccccccceeeec
Confidence            345567777777643    445888    9999985 77899999999999999999 9999999999999999999999


Q ss_pred             CCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         81 NNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        81 ~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      +|+++.+++.. ..+++|++|+|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~  116 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISC  116 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCE
T ss_pred             cccccccCHHHHhCCCcccccccCCccccc
Confidence            99999998887 899999999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=2e-11  Score=84.93  Aligned_cols=88  Identities=20%  Similarity=0.207  Sum_probs=73.5

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-C-CCCC
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-L-GDWD   95 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~-~~l~   95 (209)
                      ...++.|++    ++|.|+.+++ .|..+++|+.|++++| .++.++.  +..+++|+++++++|+++.++.. . ..++
T Consensus        19 l~~L~~L~l----s~N~l~~lp~-~~~~l~~L~~L~l~~N-~i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          19 LLLVTHLDL----SHNRLRALPP-ALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GTTCCEEEC----CSSCCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             CCCCCEEEC----CCCccCcchh-hhhhhhcccccccccc-cccccCc--cccccccCeEECCCCccCCCCCchhhcCCC
Confidence            345666777    9999999975 5888999999999999 9998853  77789999999999999998752 3 7889


Q ss_pred             CccEEEeeCCCCccccCc
Q psy14513         96 SLEVLDIQSNPWTCDCSI  113 (209)
Q Consensus        96 ~L~~l~l~~Np~~C~C~~  113 (209)
                      +|+.+++++||+......
T Consensus        91 ~L~~L~l~~N~i~~~~~~  108 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEEGI  108 (124)
T ss_dssp             TCCEEECTTSGGGGSSSC
T ss_pred             CCCEEECCCCcCCcCccH
Confidence            999999999999776554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=7e-11  Score=92.24  Aligned_cols=94  Identities=21%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513          4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA   83 (209)
Q Consensus         4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~   83 (209)
                      ++.+..|+++|.    +++.|++    ++|.|+.+++.+|.++++|++|+|++| .|+.++..  ..+++|+.|++++|+
T Consensus        20 ~~L~~iP~~lp~----~l~~L~L----s~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~--~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          20 RNLTALPPDLPK----DTTILHL----SENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD--GTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             SCCSSCCSCCCT----TCCEEEC----TTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC--SCCTTCCEEECCSSC
T ss_pred             CCCCeeCcCcCc----CCCEEEC----cCCcCCCcCHHHhhccccccccccccc-cccccccc--ccccccccccccccc
Confidence            344566777764    3455887    999999999999999999999999999 99988754  458899999999999


Q ss_pred             CcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         84 ITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        84 l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++.++..+..+++|+.+++++|...
T Consensus        89 l~~~~~~~~~l~~L~~L~l~~~~~~  113 (266)
T d1p9ag_          89 LQSLPLLGQTLPALTVLDVSFNRLT  113 (266)
T ss_dssp             CSSCCCCTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccccccccccccccccc
Confidence            9998877788899999999988654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.4e-11  Score=86.06  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=44.6

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.|+.++ +.+..+++|+.|++++| .|+.++  .|..+++|+.|++++|+++.+++.. ..+++|+.+++++|.+..
T Consensus        26 ~~n~I~~i~-~~~~~l~~L~~L~Ls~N-~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~  101 (162)
T d1a9na_          26 RGYKIPVIE-NLGATLDQFDAIDFSDN-EIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE  101 (162)
T ss_dssp             TTSCCCSCC-CGGGGTTCCSEEECCSS-CCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             CCCCCCccC-ccccccccCCEEECCCC-CCCccC--CcccCcchhhhhcccccccCCCccccccccccccceeccccccc
Confidence            666666664 34455666666666666 666653  2455566666666666666665554 456666666666666554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1e-10  Score=84.95  Aligned_cols=87  Identities=25%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC-C-CCCCCC
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-E-LGDWDS   96 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~-~~~l~~   96 (209)
                      ..+..|++    ++|.|+.++  .|..+++|++|++++| .++.+++..|..+++|+.|++++|+++.++. . +..+++
T Consensus        41 ~~L~~L~L----s~N~i~~l~--~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~  113 (162)
T d1a9na_          41 DQFDAIDF----SDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS  113 (162)
T ss_dssp             TCCSEEEC----CSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTT
T ss_pred             ccCCEEEC----CCCCCCccC--CcccCcchhhhhcccc-cccCCCccccccccccccceeccccccccccccccccccc
Confidence            44566666    999999995  4889999999999999 9999999988889999999999999998865 2 378999


Q ss_pred             ccEEEeeCCCCccccC
Q psy14513         97 LEVLDIQSNPWTCDCS  112 (209)
Q Consensus        97 L~~l~l~~Np~~C~C~  112 (209)
                      |+++++++||+.....
T Consensus       114 L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_         114 LTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CCEEECCSSGGGGSTT
T ss_pred             cchhhcCCCccccccc
Confidence            9999999999965443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=2.4e-10  Score=79.24  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=66.9

Q ss_pred             cccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      +++|+|+.++.  +.++++|++|++++| .++.+++ .|..+++|+.|++++|.++.++ .+..+++|+.+++++|.+.-
T Consensus         5 Ls~n~l~~l~~--l~~l~~L~~L~ls~N-~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           5 LAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             CTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             cCCCCCCCCcc--cccCCCCCEEECCCC-ccCcchh-hhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            39999999874  789999999999999 9999976 4677999999999999999986 36889999999999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.5e-10  Score=87.23  Aligned_cols=78  Identities=22%  Similarity=0.343  Sum_probs=62.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      ++|.|+.+++++|.++++|+.|++++| .++.+++.+|.++++|+++++++|+++.+++.. ..+++|+++++++|.+.-
T Consensus       137 ~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         137 QDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccccccChhHhccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            678888888888888888888888888 888888888888888888888888888765544 777888888888887754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.97  E-value=8.3e-10  Score=87.32  Aligned_cols=91  Identities=23%  Similarity=0.366  Sum_probs=66.8

Q ss_pred             ccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCC
Q psy14513         13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG   92 (209)
Q Consensus        13 ~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~   92 (209)
                      ++...+.++..|.+    ++|.+....+..|.+++.++.|++++| .+..+++..|.++++|+.|+|++|+++++|.++.
T Consensus       165 l~~~~~~~L~~L~l----~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~  239 (305)
T d1xkua_         165 IPQGLPPSLTELHL----DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA  239 (305)
T ss_dssp             CCSSCCTTCSEEEC----TTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTT
T ss_pred             cCcccCCccCEEEC----CCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccccccccccccc
Confidence            33344445556666    777777777777777777888888888 7777777777777778888888888877776666


Q ss_pred             CCCCccEEEeeCCCCc
Q psy14513         93 DWDSLEVLDIQSNPWT  108 (209)
Q Consensus        93 ~l~~L~~l~l~~Np~~  108 (209)
                      .+++|+.|++++|.+.
T Consensus       240 ~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         240 DHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TCSSCCEEECCSSCCC
T ss_pred             cccCCCEEECCCCccC
Confidence            7778888888777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.96  E-value=1.3e-09  Score=86.15  Aligned_cols=94  Identities=28%  Similarity=0.387  Sum_probs=79.9

Q ss_pred             CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513          5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI   84 (209)
Q Consensus         5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l   84 (209)
                      +....|+.++.    +++.|++    ++|+|+.+++.+|.++++|++|++++| .+..+++.+|..++.|+.+++++|++
T Consensus        21 ~L~~lP~~l~~----~l~~L~L----s~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          21 GLEKVPKDLPP----DTALLDL----QNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             CCCSCCCSCCT----TCCEEEC----CSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCccCCCCCC----CCCEEEC----cCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCCcc
Confidence            45666777764    4566888    999999999999999999999999999 99999999999999999999999999


Q ss_pred             cccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         85 TSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        85 ~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      +.+|...  ...+..+++.+|.+..
T Consensus        92 ~~l~~~~--~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          92 KELPEKM--PKTLQELRVHENEITK  114 (305)
T ss_dssp             SBCCSSC--CTTCCEEECCSSCCCB
T ss_pred             CcCccch--hhhhhhhhccccchhh
Confidence            9998765  3466777777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.6e-09  Score=77.95  Aligned_cols=77  Identities=13%  Similarity=0.108  Sum_probs=68.1

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      +++.+..++. .+.++++|++|++++|+.++.+++++|.+++.|+.|++++|+++.+++.. ..+++|+.|+|++|.+.
T Consensus        16 ~~~~~~~~p~-~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          16 TRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             CSSCCCTTTT-TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cCCCCccCcc-cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            6777777654 46789999999998763699999999999999999999999999998876 89999999999999986

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1e-08  Score=78.06  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=78.4

Q ss_pred             CCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceeccccccccc-ccCccccCCCCCcCEEecc-CCc
Q psy14513          6 NSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLT-FIHPYSFNNDWSLKEFYIN-NNA   83 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~-~i~~~~f~~l~~L~~L~Ls-~N~   83 (209)
                      ....|+.++    .++..|++    ++|.|+.+++.+|.++++|++|++++| .+. .+++++|.+++.++.+++. .|.
T Consensus        20 l~~iP~~l~----~~l~~L~L----s~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~   90 (242)
T d1xwdc1          20 VTEIPSDLP----RNAIELRF----VLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN   90 (242)
T ss_dssp             CSSCCSCSC----SCCSEEEE----ESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTT
T ss_pred             CCCcCCCCC----CCCCEEEC----cCCcCCccChhHhhccchhhhhhhccc-cccceeecccccccccccccccccccc
Confidence            345555655    34566888    999999999999999999999999999 765 4788999999999999876 478


Q ss_pred             CcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         84 ITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        84 l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      +..++... ..++.|+.+++.+|.+.
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccchhhhc
Confidence            88887776 88999999999998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=2.2e-08  Score=80.77  Aligned_cols=69  Identities=20%  Similarity=0.266  Sum_probs=36.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN  105 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~N  105 (209)
                      ++|+++.+++  |..+++|++|++++| .++.++  .+.++++|++|++++|+++.+++ +..+++|+.|++++|
T Consensus       315 s~n~l~~l~~--l~~l~~L~~L~L~~n-~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         315 YFNNISDISP--VSSLTKLQRLFFANN-KVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCCCCcc--cccCCCCCEEECCCC-CCCCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            4555555542  445555555555555 555543  24445555555555555555442 344555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.56  E-value=1.1e-08  Score=81.05  Aligned_cols=78  Identities=22%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCc-ccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      +++......+..+..+++++.+++++| .+....+ .+..+++|+.|+|++|+++ .+|..+..+++|++|+|++|.+.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~-~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccc-ccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            566777767777777777888888887 7665544 3455677888888888887 466666777778888888877765


Q ss_pred             c
Q psy14513        110 D  110 (209)
Q Consensus       110 ~  110 (209)
                      .
T Consensus       283 ~  283 (313)
T d1ogqa_         283 E  283 (313)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.52  E-value=2.9e-08  Score=78.52  Aligned_cols=78  Identities=17%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             cccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccEEEeeCCCCccc
Q psy14513         32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        32 ~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~l~l~~Np~~C~  110 (209)
                      .|++.+..|..|.+|++|++|+|++| .+..+.+..+..+..|+.+++++|.+.. +|..+..++.++.+++++|.+...
T Consensus        86 ~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~  164 (313)
T d1ogqa_          86 INNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             ETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ccccccccccccccccccchhhhccc-cccccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccc
Confidence            36777544556777888888888888 7777777777777778888888777766 444457777888888888877543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=5.2e-08  Score=74.02  Aligned_cols=76  Identities=25%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             cccccccCchhhcCCc-ccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513         32 NSELYAIRKNTFKNLL-NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        32 ~n~l~~l~~~~f~~l~-~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~  108 (209)
                      ++.+..++...|.+++ .++.+++++| .++.++..+|....-.+.+++++|+++.+|.+. ..+++|+.|++++|.+.
T Consensus       137 n~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         137 NINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccccccccceeeecccc-cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            3444444444444433 3444444444 444444444442111222234444444444443 44444444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=7.7e-08  Score=72.63  Aligned_cols=67  Identities=25%  Similarity=0.350  Sum_probs=39.0

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEee
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ  103 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~  103 (209)
                      ++|.+....+  |.++++|+.|++++| +++.+++  |.++++|++|++++|+++.+++ ++.+++|+.|+++
T Consensus       159 ~~n~~~~~~~--l~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         159 GNAQVSDLTP--LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             cccccccchh--hcccccceecccCCC-ccCCChh--hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            5555554432  556666666666666 6665543  4455666666666666666542 3556666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.40  E-value=1.9e-07  Score=69.78  Aligned_cols=80  Identities=28%  Similarity=0.397  Sum_probs=64.1

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      +++.|.+    ++|.+..+.+  +..+++|++|++++| .++.+++  +..+++|++|++++|+++.++ .+..+++|+.
T Consensus        47 ~L~~L~l----~~~~i~~l~~--l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~  116 (210)
T d1h6ta2          47 SIDQIIA----NNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKS  116 (210)
T ss_dssp             TCCEEEC----TTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCE
T ss_pred             CccEEEC----cCCCCCCchh--HhhCCCCCEEeCCCc-cccCccc--cccCccccccccccccccccc-cccccccccc
Confidence            4455555    8888888764  677899999999999 9988775  456888999999999998876 3577889999


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      +++.+|.+..
T Consensus       117 L~l~~~~~~~  126 (210)
T d1h6ta2         117 LSLEHNGISD  126 (210)
T ss_dssp             EECTTSCCCC
T ss_pred             cccccccccc
Confidence            9999887653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.33  E-value=4.2e-09  Score=78.61  Aligned_cols=77  Identities=26%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccc---------------------cCCCCCcCEEeccCCcCcccCC
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYS---------------------FNNDWSLKEFYINNNAITSLPH   89 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~---------------------f~~l~~L~~L~Ls~N~l~~l~~   89 (209)
                      ++|.|+.++  .|.++++|+.|++++| .++.++...                     +..+++|+.|++++|+++.++.
T Consensus        56 s~n~I~~i~--~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~  132 (198)
T d1m9la_          56 STNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             SEEEESCCC--CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHH
T ss_pred             cccCCCCcc--cccCCccccChhhccc-ccccccccccccccccccccccccccccccccccccccccccccchhccccc
Confidence            667777664  3566667777777777 666654321                     2224446777777777766543


Q ss_pred             --CCCCCCCccEEEeeCCCCccc
Q psy14513         90 --ELGDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        90 --~~~~l~~L~~l~l~~Np~~C~  110 (209)
                        .+..+++|+.|++++||+.+.
T Consensus       133 ~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         133 IDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccCCCccceeecCCCccccC
Confidence              226677777888888776544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=5.2e-07  Score=66.67  Aligned_cols=80  Identities=26%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      +++.|.+    ++|.|..++  .+..+++|++|++++| .++.+++  +.++++|+.|++++|.+..++. +..++.|+.
T Consensus        41 ~l~~L~l----~~~~i~~l~--~l~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~  110 (199)
T d2omxa2          41 QVTTLQA----DRLGIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTG  110 (199)
T ss_dssp             TCCEEEC----TTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             CCCEEEC----CCCCCCCcc--ccccCCCcCcCccccc-cccCccc--ccCCcccccccccccccccccc-ccccccccc
Confidence            3344555    677777764  2456777777777777 7776654  5667777777777777766652 456666667


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      +++++|....
T Consensus       111 L~l~~~~~~~  120 (199)
T d2omxa2         111 LTLFNNQITD  120 (199)
T ss_dssp             EECCSSCCCC
T ss_pred             cccccccccc
Confidence            7666665543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=4.9e-07  Score=72.53  Aligned_cols=81  Identities=26%  Similarity=0.289  Sum_probs=67.2

Q ss_pred             cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513         19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE   98 (209)
Q Consensus        19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~   98 (209)
                      .+++.|.+    +++.|+.++  .+..+++|++|++++| .++.+++  +.++++|++|++++|++..+++ +..+++|+
T Consensus        44 ~~l~~L~l----~~~~I~~l~--gl~~L~nL~~L~Ls~N-~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~  113 (384)
T d2omza2          44 DQVTTLQA----DRLGIKSID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLT  113 (384)
T ss_dssp             TTCCEEEC----CSSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             CCCCEEEC----CCCCCCCcc--ccccCCCCCEEeCcCC-cCCCCcc--ccCCcccccccccccccccccc-cccccccc
Confidence            35566777    889999885  4677999999999999 9999875  7789999999999999998753 57888999


Q ss_pred             EEEeeCCCCcc
Q psy14513         99 VLDIQSNPWTC  109 (209)
Q Consensus        99 ~l~l~~Np~~C  109 (209)
                      .+++.+|....
T Consensus       114 ~L~~~~~~~~~  124 (384)
T d2omza2         114 GLTLFNNQITD  124 (384)
T ss_dssp             EEECCSSCCCC
T ss_pred             ccccccccccc
Confidence            99998887653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.9e-08  Score=72.59  Aligned_cols=78  Identities=18%  Similarity=0.053  Sum_probs=62.1

Q ss_pred             cccccCchhhcCCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccc
Q psy14513         34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCD  110 (209)
Q Consensus        34 ~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~  110 (209)
                      ......+..+..+++|++|+|++| +|+.+++  ..+..+++|+.|+|++|+++.++... .....|+.+++.+||+.+.
T Consensus        52 ~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          52 SMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             hHhhhhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            333444566778999999999999 9999875  45667899999999999999987633 3345789999999999876


Q ss_pred             cC
Q psy14513        111 CS  112 (209)
Q Consensus       111 C~  112 (209)
                      ..
T Consensus       131 ~~  132 (162)
T d1koha1         131 FR  132 (162)
T ss_dssp             SS
T ss_pred             cc
Confidence            44

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=1.4e-06  Score=64.25  Aligned_cols=82  Identities=27%  Similarity=0.372  Sum_probs=67.4

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      +.++..|.+    ++|.++.+++  |.++++|++|++++| .+..+++  +.+++.|+.+++++|....++ .+..+++|
T Consensus        61 l~nL~~L~L----s~N~l~~~~~--l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L  130 (199)
T d2omxa2          61 LNNLTQINF----SNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDID-PLKNLTNL  130 (199)
T ss_dssp             CTTCCEEEC----CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred             CCCcCcCcc----ccccccCccc--ccCCccccccccccc-ccccccc--ccccccccccccccccccccc-ccchhhhh
Confidence            345566666    8999999875  889999999999999 8887764  677899999999999988764 24678999


Q ss_pred             cEEEeeCCCCcc
Q psy14513         98 EVLDIQSNPWTC  109 (209)
Q Consensus        98 ~~l~l~~Np~~C  109 (209)
                      +.+++++|.+..
T Consensus       131 ~~L~l~~n~l~~  142 (199)
T d2omxa2         131 NRLELSSNTISD  142 (199)
T ss_dssp             SEEECCSSCCCC
T ss_pred             HHhhhhhhhhcc
Confidence            999999997753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=3.1e-06  Score=62.93  Aligned_cols=72  Identities=22%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++|.+..++  .+.+++.++.+++++| .++....  +..+++|+.+++++|+++.++. +..+++|+.|++++|.+.
T Consensus       120 ~~~~~~~~~--~l~~l~~l~~l~~~~n-~l~~~~~--~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         120 EHNGISDIN--GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             TTSCCCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--cccccccccccccccc-ccccccc--cccccccccccccccccccccc-ccCCCCCCEEECCCCCCC
Confidence            677776654  4667777888888888 7665433  3446778888888887777642 466777888888877765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.15  E-value=1.4e-08  Score=75.77  Aligned_cols=66  Identities=21%  Similarity=0.158  Sum_probs=55.5

Q ss_pred             hhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        41 ~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      ..|..+++|++|+|++| .|+.++.  +.++.+|+.|++++|.++.++.....++.|+.|++++|.+.-
T Consensus        42 ~sl~~L~~L~~L~Ls~n-~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          42 ATLSTLKACKHLALSTN-NIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHHHTTTCCEEECSEE-EESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC
T ss_pred             hHHhcccccceeECccc-CCCCccc--ccCCccccChhhcccccccccccccccccccccccccccccc
Confidence            57889999999999999 9999853  677899999999999999887433555678899999988763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.1e-07  Score=66.86  Aligned_cols=77  Identities=19%  Similarity=0.332  Sum_probs=61.1

Q ss_pred             ccceeccccccccccccccCc--hhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-------
Q psy14513         20 TIMKVQLPYSTANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-------   90 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-------   90 (209)
                      ++..|++    ++|+|+.+.+  ..+..+++|+.|++++| .|+.+++..+....+|+.+++++|.+......       
T Consensus        66 ~L~~L~L----s~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          66 ELLSLNL----SNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             TCCCCCC----CSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             CCCEeeC----CCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            3445555    9999999874  66788999999999999 99999886665667899999999999875331       


Q ss_pred             C-CCCCCccEEE
Q psy14513         91 L-GDWDSLEVLD  101 (209)
Q Consensus        91 ~-~~l~~L~~l~  101 (209)
                      + ..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            2 5678888774

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.07  E-value=9.2e-06  Score=63.81  Aligned_cols=76  Identities=18%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513         20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV   99 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~   99 (209)
                      ++..|.+    ++|+|+.+|..    ..+|+.|++++| .++.++.-    .+.|++|++++|.+..+|. .+.++.|++
T Consensus        59 ~L~~L~L----s~N~l~~lp~~----~~~L~~L~l~~n-~l~~l~~l----p~~L~~L~L~~n~l~~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          59 HLESLVA----SCNSLTELPEL----PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNNQLEKLPE-LQNSSFLKI  124 (353)
T ss_dssp             TCSEEEC----CSSCCSSCCCC----CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred             CCCEEEC----CCCCCcccccc----hhhhhhhhhhhc-ccchhhhh----ccccccccccccccccccc-hhhhcccee
Confidence            4566766    88999988743    467888999999 88877642    2459999999999999874 467889999


Q ss_pred             EEeeCCCCcc
Q psy14513        100 LDIQSNPWTC  109 (209)
Q Consensus       100 l~l~~Np~~C  109 (209)
                      +++.+|.+..
T Consensus       125 L~l~~~~~~~  134 (353)
T d1jl5a_         125 IDVDNNSLKK  134 (353)
T ss_dssp             EECCSSCCSC
T ss_pred             eccccccccc
Confidence            9999887653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=6.5e-06  Score=61.61  Aligned_cols=81  Identities=21%  Similarity=0.261  Sum_probs=63.8

Q ss_pred             ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513         18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL   97 (209)
Q Consensus        18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L   97 (209)
                      ..+++.|.+    .+|.|+.+.  .+..+++|++|++++| .+..+.+  |..++.++.+++++|.++.++ .+..++.|
T Consensus        40 l~~L~~L~l----~~~~i~~l~--~l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L  109 (227)
T d1h6ua2          40 LDGITTLSA----FGTGVTTIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSI  109 (227)
T ss_dssp             HHTCCEEEC----TTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred             cCCcCEEEC----CCCCCCcch--hHhcCCCCcEeecCCc-eeecccc--ccccccccccccccccccccc-cccccccc
Confidence            345556666    889999885  4788999999999999 8888765  677888999999999988775 34678888


Q ss_pred             cEEEeeCCCCc
Q psy14513         98 EVLDIQSNPWT  108 (209)
Q Consensus        98 ~~l~l~~Np~~  108 (209)
                      +.++++++...
T Consensus       110 ~~l~l~~~~~~  120 (227)
T d1h6ua2         110 KTLDLTSTQIT  120 (227)
T ss_dssp             CEEECTTSCCC
T ss_pred             ccccccccccc
Confidence            88888877543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.79  E-value=1.3e-05  Score=62.86  Aligned_cols=67  Identities=19%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513         31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                      ..+.+..++    ..+++|++|++++| .++.++..    +++|+.|+|++|+++.+|.   .+++|++|++++|++..
T Consensus       272 ~~~~~~~~~----~~~~~L~~L~Ls~N-~l~~lp~~----~~~L~~L~L~~N~L~~l~~---~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         272 SSNEIRSLC----DLPPSLEELNVSNN-KLIELPAL----PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CSSCCSEEC----CCCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS
T ss_pred             ccCcccccc----ccCCCCCEEECCCC-ccCccccc----cCCCCEEECCCCcCCcccc---ccCCCCEEECcCCcCCC
Confidence            344444443    34678999999999 99988743    5789999999999998874   35678999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00018  Score=57.92  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             cceeccccccccccccccC----chhhcCCcccceecccccccccccC----ccccC-CCCCcCEEeccCCcCccc----
Q psy14513         21 IMKVQLPYSTANSELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFN-NDWSLKEFYINNNAITSL----   87 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~-~l~~L~~L~Ls~N~l~~l----   87 (209)
                      ++.|.+    ++|.|+...    ..++..+++|++|+|++| .|+...    ...+. ...+|+.|++++|.++..    
T Consensus        29 l~~L~L----~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          29 CQVVRL----DDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             CSEEEE----ESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCEEEe----CCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            344555    788777433    345678899999999999 875321    12222 234699999999998753    


Q ss_pred             -CCCCCCCCCccEEEeeCCCCcc
Q psy14513         88 -PHELGDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        88 -~~~~~~l~~L~~l~l~~Np~~C  109 (209)
                       +..+..+++|+.+++++|++..
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ccchhhccccccccccccccchh
Confidence             2233667899999999998754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=9e-05  Score=59.83  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             ccceeccccccccccccccC-chhhcCCcccceecccccccccccC----ccccCCCCCcCEEeccCCcCcc-----cCC
Q psy14513         20 TIMKVQLPYSTANSELYAIR-KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFNNDWSLKEFYINNNAITS-----LPH   89 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~-~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~-----l~~   89 (209)
                      ++..|++    ++|+|+... ...+..+++++.|+|++| .++...    ..++...++|+.|||++|+++.     +..
T Consensus         3 ~l~~ld~----~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDI----QCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEE----ESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEe----eCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            4566777    999999875 556778899999999999 876432    2345567889999999999863     323


Q ss_pred             CC-CCCCCccEEEeeCCCCcc
Q psy14513         90 EL-GDWDSLEVLDIQSNPWTC  109 (209)
Q Consensus        90 ~~-~~l~~L~~l~l~~Np~~C  109 (209)
                      .+ ....+|+.|++++|.+.-
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBG
T ss_pred             HHhcCCCCCCEEECCCCCccc
Confidence            33 344589999999998643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.29  E-value=0.00028  Score=55.57  Aligned_cols=16  Identities=19%  Similarity=0.329  Sum_probs=8.3

Q ss_pred             CCCccEEEeeCCCCcc
Q psy14513         94 WDSLEVLDIQSNPWTC  109 (209)
Q Consensus        94 l~~L~~l~l~~Np~~C  109 (209)
                      .+.|+.+++++|.+..
T Consensus       301 ~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         301 MPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CTTCCEEECTTSBSCT
T ss_pred             CCCCCEEECCCCcCCC
Confidence            3445555555555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.00048  Score=52.98  Aligned_cols=81  Identities=14%  Similarity=0.159  Sum_probs=55.6

Q ss_pred             ccceeccccccccccccccC-chhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCcccC-CCC-CCCC
Q psy14513         20 TIMKVQLPYSTANSELYAIR-KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITSLP-HEL-GDWD   95 (209)
Q Consensus        20 ~l~~L~ll~~~s~n~l~~l~-~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~-~~l~   95 (209)
                      ++..|++    +++.+..-. ...+..+++|++|+++++ .++......+...++|+.|+++++ .++... ..+ ..++
T Consensus        47 ~L~~LdL----s~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          47 RVQHMDL----SNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCCEEEC----TTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCEEEC----CCCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            4555666    777776532 455778899999999999 777655566667788999999884 554311 112 4577


Q ss_pred             CccEEEeeCC
Q psy14513         96 SLEVLDIQSN  105 (209)
Q Consensus        96 ~L~~l~l~~N  105 (209)
                      +|++|++++.
T Consensus       122 ~L~~L~ls~c  131 (284)
T d2astb2         122 RLDELNLSWC  131 (284)
T ss_dssp             TCCEEECCCC
T ss_pred             hccccccccc
Confidence            8888888763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0025  Score=48.78  Aligned_cols=63  Identities=19%  Similarity=0.074  Sum_probs=43.7

Q ss_pred             hcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCccc-CCCCCCCCCccEEEeeCC
Q psy14513         43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITSL-PHELGDWDSLEVLDIQSN  105 (209)
Q Consensus        43 f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l-~~~~~~l~~L~~l~l~~N  105 (209)
                      +.++++|++|++++++.++.-....+..+++|++|+++++ .++.- ...+..+++|+.+++.++
T Consensus       171 ~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3467889999998874566555555666788999999884 55532 122366788899988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.84  E-value=0.0037  Score=48.79  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=27.2

Q ss_pred             CCcccceeccccccccccc-----CccccCCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCCCC
Q psy14513         45 NLLNLQTLYCNFNPKLTFI-----HPYSFNNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSNPW  107 (209)
Q Consensus        45 ~l~~L~~L~Ls~n~~l~~i-----~~~~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~Np~  107 (209)
                      ....|+.|++++| .+..-     -...+...+.|+.|++++|.++.     +...+...+.|+.|++++|++
T Consensus       184 ~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         184 SHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hhhhhcccccccc-cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence            3445555555555 44321     11223334445555555555432     111113344555555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.77  E-value=0.021  Score=39.84  Aligned_cols=66  Identities=9%  Similarity=-0.016  Sum_probs=41.7

Q ss_pred             hhcCCcccceecccccccccccCcc----ccCCCCCcCEEeccCCcCccc-----CCCCCCCCCccEEEeeCCCCc
Q psy14513         42 TFKNLLNLQTLYCNFNPKLTFIHPY----SFNNDWSLKEFYINNNAITSL-----PHELGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        42 ~f~~l~~L~~L~Ls~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~l~l~~Np~~  108 (209)
                      ++...+.|++|+|++| .+..-...    ++...+.|+.|+|++|.++.-     -..+..-++|++|++.+|...
T Consensus        39 ~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          39 AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCC
Confidence            4556677888888888 76542222    223356688888888887751     112245567888888777543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.07  E-value=0.19  Score=34.66  Aligned_cols=83  Identities=23%  Similarity=0.140  Sum_probs=56.3

Q ss_pred             cceeccccccccccccccC----chhhcCCcccceecccccccccccCc----cccCCCCCcCEEeccCCcCcccCCC--
Q psy14513         21 IMKVQLPYSTANSELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDWSLKEFYINNNAITSLPHE--   90 (209)
Q Consensus        21 l~~L~ll~~~s~n~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~l~~~--   90 (209)
                      +..|.+    ++|.+..-.    ...+...+.|++|+|++| .++.-..    .++....+|++|++++|++..+...  
T Consensus        46 L~~L~L----s~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          46 IEKFSL----ANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             CCEEEC----TTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             cceeec----cccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            455666    888887533    244556688999999999 8776322    2355567799999999977654311  


Q ss_pred             ------CCCCCCccEEEeeCCCCc
Q psy14513         91 ------LGDWDSLEVLDIQSNPWT  108 (209)
Q Consensus        91 ------~~~l~~L~~l~l~~Np~~  108 (209)
                            +..-++|+.++++.+...
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFASME  144 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhCCCccEeeCcCCCch
Confidence                  123567888888776543