Psyllid ID: psy14582

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------169

MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKITDFGAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSDVEK

ccHHHHHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccEEEEEccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHccccccccEEcccccEEEEcccHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHcccccEEEEEEccccHHHHHHHHccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEccccHHHHHHHHcccccEEEEEEcccccEEEEEEHHHccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEccccEEEEEcccccHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHccccEEEEEccccHHHHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHccccEEEEEccccccccccccEEEEEccccccccccccEEEccHHHHHHHHcccccccccccEEEEEEccccHHHHHHHHHccccccEEcccccHHHHHHHHHHHcccccHHHHHHHHHHccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccEEEcccccEEEEEcccHHHHHHHHHHccccccHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEccEEcccccccccEEEEEEEccHHHHHHHHHHHHHHHHccccccHHHHcccccccccEEEccccccccccccccHHHHHHHHHcccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEEEEEcccccccEEcccccccccccEEEEEEEccccEEEEEEEEEcccEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccc

ccHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccEEEccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHcccccHHHHccccccccHHcccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcHHHccccccccccccccEEcccccEEEccccEEEEEccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHccccccEEEcccccEEEEccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccccEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEcccHcHHHHHcccccEEEEEEEcccccEEEEHHHHHHHHHccccccEEEEEEEccccccccEEEEEEEccHccccccccEEEEccccccHHHHHHHHHHHHHHccccccEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccccEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccEEEcccccHHHHHHHHHHHHcccEEEEEEEcHHHcccccccHHHHHHHHHHHHHccccEEEEEEEccEEcccccccEEEEEEccEEEccccccEEcccHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEcccHHHHHHEEEEEHHHHHHHHHHccccccHHHHHHHHHcHHHHHcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHccccccHHHHHHHHHccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccHccccccEEEEEEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHHHHcccHHHHHHHHccHHHHHHHHHHHHccccEEEEEEEEcccccccccEEEEEEEEEEcccccccEEcccccccccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEcccccccEEEEEEEEccHcccccccEEEEEEEEccccccccccccc

MADAAARQLQYEYKANSNLVLQADVRLIerrsrdeatgEVCSLVGklegtrmgdrfmrtkpikaeeRKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGiiyrpktqetRQTYEVLLSFIQEalgdqprdilCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKITdfgaeqksttaeeniddtyginvqfeesededdedtfgevreaeelddegeeARVNTAIHaenlaggedaegtgrkkdkslhpldiDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLdtgknedgdandsadarqstsirhqmgqgggdGVAVVAGTrqvldledlqfssgshfmsnkrcelpdgsfrkqrkgyeevhvpalkpkpmgpdetlvpidklpryVQHAFEDFKTLNRIQSRLCKSALEsdenlllcaptgagkTNVALLCMLQEIgkhinadgtinadeFKIIYVAPMRSLVQEMVGNFgkdeihllhdergPVLEALIARTIRNIEATQEDVRLVGlsatlpnykdVATLlrikpetglfyfdnsfrpvalEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVEltispdfqwdeklhggseGFWILVEdvdsevvlHHEYFLLKsryatddhvvkffvpvfeplppqyfLRIVSdrwigaetilpvsfrlprgagktNVALLCMLQEIgkhinadgtinadeFKIIYVAPMRSLVQEMVGNFgkdeihllhdergPVLEALIARTIRNIEATQEDVRLVGlsatlpnykdVATLlrikpetglfyfdnsfrpvalEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEadqvkngelrdllpygfaihhagmtrvDRTLVEDLFADRHIQVLVSTATlawgvnlpahtvvDRTLVEDLFADRHIQVLVSTATlawgvnlpahtviikgtqiynpekgrwveLGALDVLQMLgragrpqydtkgegvlITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLrapnlygishdalkedpllechRADLIHTAALHLERSGlikydrksghmQVTELGRIAShyycthetMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMerapipikestdepsAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRrmwqsmsplrqfrKIPEEIIKKIEkknfpwerlydlgpneigelirvpklgKTIHKYVHqfpklelathiqpitrsTLRVEltispdfqwdeklhggseGFWILVEDVDSEAIRLIQACVDVlssngwlsPAVAAMEVAQMITQAMWskdsylkqlphFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNkdrissgssvNVVVNldredevtgpviapfypqkreegwwvvigdpktnslLSIKRLTLQQKAKIkldfvapnpghhsyaLYFMsdaylgcdqeykFSIDVseyysggesdsdvek

MADAAARQLQyeykansnlvlqADVRLIerrsrdeatgevcslvgklegtrmgdrfmrtkpikaeerkvkrqkrdeaqydftrmkgatllsegvdeMVGIIYrpktqetrQTYEVLLSFIQEALGDQPRDILCGAADEVLTVlkndrmkekekkketenllgslAEERFALLVNLGKKITDFgaeqksttaeeniddtyginvqfeesededdedtFGEVREaeelddegeearVNTAIhaenlaggedaegtgrkkdkslhplDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQldtgknedgdandSADARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLEDLQfssgshfmsnkrcelpdgsfrkqRKGYEEVhvpalkpkpmgpdETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVglsatlpnykdVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETIlpvsfrlprgAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVglsatlpnykdVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTeadqvkngelRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTAtlawgvnlPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMerapipikestdepsAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRmwqsmsplrqfrkipEEIIKKiekknfpwerlydlgpnEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVlnkdrissgsSVNVVVNldredevtgpviapfypqkreegwwVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYysggesdsdvek

MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRMkekekkkeTENLLGSLAEERFALLVNLGKKITDFGAEQKSTTAEENIDDTYGINVQFeesededdedTFgevreaeelddegeearvNTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMgqgggdgvavvagTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVReeeklelqklmeRAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRkipeeiikkiekkNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMeledddrlrllqlsesqlADVARFCNRYPNIELSYEVLNKDRIssgssvnvvvnLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSDVEK

**********YEYKANSNLVLQADVRLIE********GEVCSLVGKL*********************************FTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLK******************SLAEERFALLVNLGKKITDFG***************YGI*************************************************************PLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLA*************************************************************VAVVAGTRQVLDLEDL**********************************************LVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLRE******VLR***DQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVRE**************************KVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYY***********

*****ARQLQYEYKANSNLVLQ********************LVGKLEGTRM**************************************SEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLK**************NLLGSLAEERFALLVNLGKKIT*******************GINVQFEESEDEDDE***********************************************HPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKS*****DAENQLVLLLGYDCFDFIKMLKKYRQMILYC*********************************************************************************QF******MS**RCELPDGSFRKQRKGYEEVHVP***************IDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRN*********LVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEV***********ELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELED***********SQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSI*****************

MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAE*********DEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRM*********ENLLGSLAEERFALLVNLGKKITDFGAEQKSTTAEENIDDTYGINVQFE***********GEVRE***********RVNTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLAS**************SEDPALAKILRQLDTGK****************************GVAVVAGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYY***********

*****ARQLQYEYKANSNLVLQADVRL***********************RMGDRFMRTKPIKAEERKVKRQKRDEAQYDFT**KGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVLTVLKNDRMKEKEKKKETENLLGSLAEERFALLVNLGKKITDFGAE********NI**TYGINVQFE****************************************************KSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGK*********************************AGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYY***********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTKPIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFIQEALGDQPRDILCGAADEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxRFALLVNLGKKITDFGAEQKSTTAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDEGEEARVNTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSEDPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMGQGGGDGVAVVAGTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHVVKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAIRLIQACVDVLSSNGWLSPAVAAMEVAQMITQAMWSKDSYLKQLPHFNADIIKRCTEKGVETVFDIMELEDDDRLRLLQLSESQLADVARFCNRYPNIELSYEVLNKDRISSGSSVNVVVNLDREDEVTGPVIAPFYPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKIKLDFVAPNPGHHSYALYFMSDAYLGCDQEYKFSIDVSEYYSGGESDSDVEK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1689	2.2.26 [Sep-21-2011]
Q9VUV9		2142	Putative U5 small nuclear	yes	N/A	0.366	0.288	0.827	0.0
O75643		2136	U5 small nuclear ribonucl	yes	N/A	0.366	0.289	0.785	0.0
Q9U2G0		2145	Putative U5 small nuclear	yes	N/A	0.397	0.313	0.626	0.0
Q9UT24		2176	Pre-mRNA-splicing factor	yes	N/A	0.396	0.307	0.541	0.0
Q55CI8		2237	Activating signal cointeg	yes	N/A	0.364	0.274	0.577	0.0
P32639		2163	Pre-mRNA-splicing helicas	yes	N/A	0.396	0.309	0.445	0.0
F1NTD6		2211	Activating signal cointeg	no	N/A	0.397	0.303	0.415	1e-175
E1BNG3		2201	Activating signal cointeg	no	N/A	0.397	0.305	0.405	1e-170
E9PZJ8		2198	Activating signal cointeg	no	N/A	0.397	0.305	0.405	1e-169
F1LPQ2		2197	Activating signal cointeg	no	N/A	0.397	0.305	0.403	1e-168

>sp\|Q9VUV9\|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4	Back alignment and function desciption

 Score = 1132 bits (2928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/654 (82%), Positives = 587/654 (89%), Gaps = 35/654 (5%)

Query: 815  DEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLF 874
            DEIHLLHDERGPVLEAL+ARTIRNIE TQE+VRLVGLSATLPNY+DVAT LR+KP+ GLF
Sbjct: 615  DEIHLLHDERGPVLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLF 674

Query: 875  YFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKT 934
            YFDNS+RPV+LEQQYIGVTEKKALKRFQVMN+IVYEK MEHAGRNQ+LVFVHSRKETGKT
Sbjct: 675  YFDNSYRPVSLEQQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKT 734

Query: 935  ARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDR 994
            ARA+RDMCLE+DTLG FL+EGSASMEVLRTEA+QVKN EL++LLPYGFAIHHAGMTRVDR
Sbjct: 735  ARAVRDMCLEQDTLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDR 794

Query: 995  TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGV 1054
                                               TLVEDLFADRHIQVLVSTATLAWGV
Sbjct: 795  -----------------------------------TLVEDLFADRHIQVLVSTATLAWGV 819

Query: 1055 NLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYY 1114
            NLPAHTVIIKGTQ+YNPEKGRWVEL ALDVLQMLGRAGRPQYDTKGEG+LITNHSELQ+Y
Sbjct: 820  NLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFY 879

Query: 1115 LSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGIS 1174
            LSLLN QLP+ESQ ISKLPDMLNAEIVLGTVQ+L+DAV WLGYTYLYIRMLR P LYG+S
Sbjct: 880  LSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVS 939

Query: 1175 HDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMA 1234
            HDA+K DPLLE HRADL+HTAA  LERSGLIKYDRK+GH QVT+LGRIASHYY THETM 
Sbjct: 940  HDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETML 999

Query: 1235 TYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKV 1294
            TYNQLLK TLSEIELFRVFSLS EFRHI+VREEEKLELQKLMER PIPIKES +E SAKV
Sbjct: 1000 TYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAKV 1059

Query: 1295 NILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVD 1354
            N+LLQAYISQLKLEGFALMSDMVF+TQSAARLMRAIFEIVL RGWAQLADK L+LCKM+D
Sbjct: 1060 NVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMID 1119

Query: 1355 RRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVH 1414
            RRMWQSM+PLRQF+K+P+EI KK+EKK+FPW RLYDL P+E+GELIRVPKLGKTIHK+VH
Sbjct: 1120 RRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFVH 1179

Query: 1415 QFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
            QFPKLEL+THIQPITR TLRVELTI+PDFQWDEK+HG SEGFW+L+EDVDSE I
Sbjct: 1180 QFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELI 1233

Putative RNA helicase involved in the second step of RNA splicing.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp\|O75643\|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	Back alignment and function description

>sp\|Q9U2G0\|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1	Back alignment and function description

>sp\|Q9UT24\|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1	Back alignment and function description

>sp\|Q55CI8\|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1	Back alignment and function description

>sp\|P32639\|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2	Back alignment and function description

>sp\|F1NTD6\|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2	Back alignment and function description

>sp\|E1BNG3\|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1	Back alignment and function description

>sp\|E9PZJ8\|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1	Back alignment and function description

>sp\|F1LPQ2\|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1689
242019028		2114	U520, putative [Pediculus humanus corpor	0.398	0.318	0.788	0.0
198464969		2142	GA19239 [Drosophila pseudoobscura pseudo	0.419	0.330	0.730	0.0
383854022		2134	PREDICTED: putative U5 small nuclear rib	0.366	0.290	0.856	0.0
380023710		2134	PREDICTED: putative U5 small nuclear rib	0.366	0.290	0.856	0.0
322789902		1808	hypothetical protein SINV_01618 [Solenop	0.366	0.342	0.856	0.0
170055165		2144	pre-mRNA-splicing helicase BRR2 [Culex q	0.366	0.288	0.851	0.0
328792791		2126	PREDICTED: putative U5 small nuclear rib	0.366	0.291	0.854	0.0
347966076		2174	AGAP001519-PA [Anopheles gambiae str. PE	0.366	0.284	0.856	0.0
157128662		2075	U520 [Aedes aegypti] gi\|108872530\|gb\|EAT	0.366	0.298	0.854	0.0
307212510		2134	Putative U5 small nuclear ribonucleoprot	0.366	0.290	0.856	0.0

>gi\|242019028\|ref\|XP_002429968.1\| U520, putative [Pediculus humanus corporis] gi\|212515023\|gb\|EEB17230.1\| U520, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/765 (78%), Positives = 642/765 (83%), Gaps = 92/765 (12%)

Query: 761  PRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSL---------------- 804
            P GAGKTNVALLCM++EIGKHI+ +G I  DEFKIIY+APMRSL                
Sbjct: 497  PTGAGKTNVALLCMMREIGKHIDHEGNIMGDEFKIIYIAPMRSLVQEMVGNFNKRLHSYN 556

Query: 805  --VQEMVGN--------------------------------FGK-------DEIHLLHDE 823
              V E+ G+                                F +       DEIHLLHDE
Sbjct: 557  LVVSELTGDHQLNRQQIQSTHIIVCTPEKWDIITRKGGDKTFTQLVRLIIIDEIHLLHDE 616

Query: 824  RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPV 883
            RGPVLEAL+ARTIR IEA QEDVRLVGLSATLPNY+DVAT LR+K ETGLFYFDNSFRPV
Sbjct: 617  RGPVLEALVARTIRKIEAAQEDVRLVGLSATLPNYQDVATFLRVKTETGLFYFDNSFRPV 676

Query: 884  ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCL 943
            ALEQQYIGVTEKKALKRFQVMN+IVYEKVMEHAGRNQ+LVFVHSRKETGKTARAIRDMCL
Sbjct: 677  ALEQQYIGVTEKKALKRFQVMNEIVYEKVMEHAGRNQVLVFVHSRKETGKTARAIRDMCL 736

Query: 944  EKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFAD 1003
            EKDTLGQFLREGSASMEVLRTEA+QVKN EL+DLLPYGFAIHHAGMTRVDR         
Sbjct: 737  EKDTLGQFLREGSASMEVLRTEAEQVKNSELKDLLPYGFAIHHAGMTRVDR--------- 787

Query: 1004 RHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII 1063
                                      TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII
Sbjct: 788  --------------------------TLVEDLFADRHIQVLVSTATLAWGVNLPAHTVII 821

Query: 1064 KGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123
            KGTQ+YNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEG+LITNHSELQYYLSLLN QLP
Sbjct: 822  KGTQVYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLLNQQLP 881

Query: 1124 VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPL 1183
            +ESQ++ K+PDMLNAEIVLGT+Q ++DAVTWLGYTYLYIRMLR+P LYGISHD LKEDPL
Sbjct: 882  IESQLVGKIPDMLNAEIVLGTIQTVRDAVTWLGYTYLYIRMLRSPTLYGISHDHLKEDPL 941

Query: 1184 LECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPT 1243
            LE  RADLIHTAAL L+RSGLIKYDRK+GH QVTELGRI SHYYCTHETMA YNQLLKPT
Sbjct: 942  LESFRADLIHTAALQLDRSGLIKYDRKTGHFQVTELGRICSHYYCTHETMAVYNQLLKPT 1001

Query: 1244 LSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPIKESTDEPSAKVNILLQAYIS 1303
            LSEIELFRVFSLSGEFR+I VREEEKLELQKLMER PIPIKE+ +EPSAKVN+LLQAYIS
Sbjct: 1002 LSEIELFRVFSLSGEFRNINVREEEKLELQKLMERVPIPIKENIEEPSAKVNVLLQAYIS 1061

Query: 1304 QLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363
            QLKLEGFALMSDM++VTQSAARLMRAIFEIVL+RGWAQLADK LSLCKM+DRRMWQSMSP
Sbjct: 1062 QLKLEGFALMSDMIYVTQSAARLMRAIFEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSP 1121

Query: 1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELAT 1423
            LRQFRK+PEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKT+HKYVHQFPKLEL+T
Sbjct: 1122 LRQFRKMPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTVHKYVHQFPKLELST 1181

Query: 1424 HIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEAI 1468
            HIQPITRSTLRVELTI+PDFQWDEKLHG SE FWILVEDVDSE I
Sbjct: 1182 HIQPITRSTLRVELTITPDFQWDEKLHGSSEAFWILVEDVDSEVI 1226

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|198464969\|ref\|XP_001353434.2\| GA19239 [Drosophila pseudoobscura pseudoobscura] gi\|198149958\|gb\|EAL30943.2\| GA19239 [Drosophila pseudoobscura pseudoobscura]	Back alignment and taxonomy information

>gi\|383854022\|ref\|XP_003702521.1\| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|380023710\|ref\|XP_003695656.1\| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Apis florea]	Back alignment and taxonomy information

>gi\|322789902\|gb\|EFZ15034.1\| hypothetical protein SINV_01618 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|170055165\|ref\|XP_001863460.1\| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus] gi\|167875204\|gb\|EDS38587.1\| pre-mRNA-splicing helicase BRR2 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|328792791\|ref\|XP_623928.3\| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Apis mellifera]	Back alignment and taxonomy information

>gi\|347966076\|ref\|XP_321605.3\| AGAP001519-PA [Anopheles gambiae str. PEST] gi\|333470222\|gb\|EAA00850.3\| AGAP001519-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|157128662\|ref\|XP_001661489.1\| U520 [Aedes aegypti] gi\|108872530\|gb\|EAT36755.1\| AAEL011187-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|307212510\|gb\|EFN88241.1\| Putative U5 small nuclear ribonucleoprotein 200 kDa helicase [Harpegnathos saltator]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1689
FB\|FBgn0263599		2142	l(3)72Ab "lethal (3) 72Ab" [Dr	0.326	0.257	0.689	0.0
UNIPROTKB\|O75643		2136	SNRNP200 "U5 small nuclear rib	0.262	0.207	0.774	0.0
UNIPROTKB\|E1BH78		2136	LOC100850262 "Uncharacterized	0.262	0.207	0.772	0.0
ZFIN\|ZDB-GENE-081105-64		2134	si:ch211-251j10.5 "si:ch211-25	0.262	0.208	0.768	0.0
UNIPROTKB\|F1LNJ2		2139	Ascc3l1 "Protein Ascc3l1" [Rat	0.262	0.207	0.769	0.0
UNIPROTKB\|F1SU44		1027	F1SU44 "Uncharacterized protei	0.328	0.539	0.604	0.0
WB\|WBGene00012896		2145	snrp-200 [Caenorhabditis elega	0.261	0.206	0.667	0.0
UNIPROTKB\|Q9U2G0		2145	Y46G5A.4 "Putative U5 small nu	0.261	0.206	0.667	0.0
TAIR\|locus:2037375		2171	emb1507 "embryo defective 1507	0.261	0.203	0.650	0.0
TAIR\|locus:2059969		2172	AT2G42270 [Arabidopsis thalian	0.262	0.204	0.623	0.0

FB\|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1927 (683.4 bits), Expect = 0., Sum P(4) = 0.
 Identities = 388/563 (68%), Positives = 442/563 (78%)

Query:     1 MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVCSLVGKLEGTRMGDRFMRTK 60
             MADAAARQLQYEYKANSNLVLQADVRLIER  RDEATGEVCSLVGKL+GTRMGDR+ RTK
Sbjct:     1 MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVCSLVGKLDGTRMGDRYQRTK 60

Query:    61 PIKAEERKVKRQKRDEAQYDFTRMKGATLLSEGVDEMVGIIYRPKTQETRQTYEVLLSFI 120
             P K EERKVKRQKRDEAQYDF RMKGATLLSEG+DEMVGI+YRPKTQETRQTYEVLLSFI
Sbjct:    61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120

Query:   121 QEALGDQPRDILCGAADEVLTVLKNDRMXXXXXXXXTENLLGSLAEERFALLVNLGKKIT 180
             QEALGDQPRDILCGAADE+L VLKNDR+         ++LLG++ +ERFALLVNLGKKIT
Sbjct:   121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180

Query:   181 DFGAEQ-KSTTA----EENIDDTYGINVQFXXXXXXXXXXTFXXXXXXXXXXXXXXXXXX 235
             DFG++   + TA    EE ID+TYGINVQF           +                  
Sbjct:   181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEESEEESDNDMYGEIRDDDAQDEGEEARID 240

Query:   236 NTAIHAENLAGGEDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNI 295
             +T +HAENLA  E A     KK++SLHPLDIDAYWLQR LSK Y DAMVSQ+KA +VL I
Sbjct:   241 HT-LHAENLANEEAANNV--KKERSLHPLDIDAYWLQRCLSKFYKDAMVSQSKAADVLKI 297

Query:   296 LKSAGDDRDAENQLVLLLGYDCFDFIKMLKKYRQMILYCTLLASSQSESERQKLRDTMSE 355
             LK A DDRD ENQLVLLLGYDCFDFIK LK  RQM+LYCT+LAS+Q++SERQ++R+ M  
Sbjct:   298 LKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREKMRG 357

Query:   356 DPALAKILRQLDTGKNEDGDANDSADARQSTSIRHQMXXXXXXXXXXXXXTRQVLDLEDL 415
             + ALAKILRQLDTGK+ED    +  +AR S   +                 RQ+L+LE++
Sbjct:   358 NSALAKILRQLDTGKSED---QEEGEARGSKRGKGDAEDGGAAAAGQVAGVRQLLELEEM 414

Query:   416 QFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHA 475
              F+ GSHFM+NKRC+LPDGS+RKQRKGYEEVHVPALKP P   +E L P+DKLP+YVQ  
Sbjct:   415 AFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDANEELQPVDKLPKYVQPV 474

Query:   476 FEDFKTLNRIQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINAD 535
             FE FKTLNRIQSRL K+AL+SDEN+LLCAPTGAGKTNVALL M++EIGKHIN DGTINA 
Sbjct:   475 FEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQ 534

Query:   536 EFKIIYVAPMRSLVQEMVGNFGK 558
             +FKIIYVAPM+SLVQEMVGNFG+
Sbjct:   535 DFKIIYVAPMKSLVQEMVGNFGR 557

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0005682 "U5 snRNP" evidence=ISS

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IC

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

UNIPROTKB\|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SU44 F1SU44 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

WB\|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.13	0.824
3rd Layer	3.6.4	0.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1689
COG1204		766	COG1204, COG1204, Superfamily II helicase [General	1e-137
pfam02889		309	pfam02889, Sec63, Sec63 Brl domain	1e-110
smart00611		312	smart00611, SEC63, Domain of unknown function in S	1e-101
smart00973		314	smart00973, Sec63, Sec63 Brl domain	1e-87
smart00611		312	smart00611, SEC63, Domain of unknown function in S	9e-70
pfam02889		309	pfam02889, Sec63, Sec63 Brl domain	1e-65
smart00973		314	smart00973, Sec63, Sec63 Brl domain	1e-52
PRK01172		674	PRK01172, PRK01172, ski2-like helicase; Provisiona	7e-30
COG1204		766	COG1204, COG1204, Superfamily II helicase [General	3e-27
pfam02889		309	pfam02889, Sec63, Sec63 Brl domain	3e-26
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	4e-26
smart00611		312	smart00611, SEC63, Domain of unknown function in S	2e-25
smart00973		314	smart00973, Sec63, Sec63 Brl domain	2e-23
PRK00254		720	PRK00254, PRK00254, ski2-like helicase; Provisiona	4e-22
COG1202		830	COG1202, COG1202, Superfamily II helicase, archaea	5e-18
COG4581		1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	9e-14
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	2e-10
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	3e-09
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	4e-09
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	5e-09
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	1e-08
COG1201		814	COG1201, Lhr, Lhr-like helicases [General function	8e-08
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	3e-07
COG4581		1041	COG4581, COG4581, Superfamily II RNA helicase [DNA	4e-07
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	3e-06
PRK01172		674	PRK01172, PRK01172, ski2-like helicase; Provisiona	3e-05
COG1202		830	COG1202, COG1202, Superfamily II helicase, archaea	2e-04
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	3e-04
PRK02362		737	PRK02362, PRK02362, ski2-like helicase; Provisiona	4e-04
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	6e-04
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	7e-04
COG1201		814	COG1201, Lhr, Lhr-like helicases [General function	0.002
COG1203		733	COG1203, COG1203, CRISPR-associated helicase Cas3	0.002
COG5407		610	COG5407, SEC63, Preprotein translocase subunit Sec	0.003

>gnl\|CDD\|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]	Back alignment and domain information

 Score =  444 bits (1145), Expect = e-137
 Identities = 208/662 (31%), Positives = 294/662 (44%), Gaps = 68/662 (10%)

Query: 815  DEIHLLHDE-RGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGL 873
            DEIHLL D  RGPVLE+++AR  R      E +R+VGLSATLPN ++VA  L  K     
Sbjct: 153  DEIHLLGDRTRGPVLESIVARMRR----LNELIRIVGLSATLPNAEEVADWLNAKLVESD 208

Query: 874  FYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRN-QLLVFVHSRKETG 932
            +      R V     ++G   KK      +++++  E V+E      Q+LVFVHSRKE  
Sbjct: 209  WRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267

Query: 933  KTARAIRDMCLEKDTLGQFLREGSASMEVLRTEADQVKNGELRDLLPYGFAIHHAGMTRV 992
            KTA+ +R       +  + +     +  +L  E    ++ EL +L+  G A HHAG+ R 
Sbjct: 268  KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRE 327

Query: 993  DRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQVLVSTATLAW 1052
            DR LVED F    I+VLVST TLA                                    
Sbjct: 328  DRQLVEDAFRKGKIKVLVSTPTLAA----------------------------------- 352

Query: 1053 GVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITN-HSEL 1111
            GVNLPA TVIIK T+ Y+P+ G  V++  LDVLQM GRAGRP YD  GE +++   H EL
Sbjct: 353  GVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDEL 411

Query: 1112 QYYLSLLNHQLPVESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLY 1171
            +Y   L     P   +  SKL D LN    L  V ++ DAV+WL  T  Y R    P  Y
Sbjct: 412  EYLAELYIQSEPEPIE--SKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTY 469

Query: 1172 GISHDALKEDPLLECHRADLIHTAALHLERSGLIKYDRKSGHMQVTELGRIASHYYCTHE 1231
            G      +    L             +LE +GLI  D     +  TELG++ S  Y   E
Sbjct: 470  GEGMLREEILASLR------------YLEENGLI-LDADWEALHATELGKLVSRLYIDPE 516

Query: 1232 TMATYNQLLK---PTLSEIELFRVFSLSGEFRHITVREEEKLELQK--LMERAPIPIKES 1286
            +   +  LL       +EI L  + SL+ +   I +RE E  EL    L E++   + E 
Sbjct: 517  SAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELEEQSDYLLGER 576

Query: 1287 TDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKA 1346
             DE + + N+LLQA  +  +L  +   +D   +  +       +  I     W  L+   
Sbjct: 577  LDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW--LSADL 634

Query: 1347 LSLCKMVDRRMWQSMSPLRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLG 1406
            L+L K  +R        L   RK  E +  +IE      E L +L        +R  KL 
Sbjct: 635  LALGKAAERLAKILGLGLHVLRK-LEILSLRIEYGVRS-EELLELVEIRGVGRVRARKLY 692

Query: 1407 KTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSE 1466
               +K +     +     + P+T    R+   I      D  L G +  F I V ++D  
Sbjct: 693  NAGYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLL 752

Query: 1467 AI 1468
             +
Sbjct: 753  YV 754

Length = 766

>gnl\|CDD\|217270 pfam02889, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>gnl\|CDD\|214946 smart00973, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>gnl\|CDD\|217270 pfam02889, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|214946 smart00973, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|100801 PRK01172, PRK01172, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|217270 pfam02889, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>gnl\|CDD\|214946 smart00973, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|234702 PRK00254, PRK00254, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only]	Back alignment and domain information

Back alignment and domain information

>gnl\|CDD\|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|100801 PRK01172, PRK01172, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|235032 PRK02362, PRK02362, ski2-like helicase; Provisional	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>gnl\|CDD\|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1689
KOG0951\|consensus		1674		100.0
KOG0952\|consensus		1230		100.0
PRK02362		737	ski2-like helicase; Provisional	100.0
PRK00254		720	ski2-like helicase; Provisional	100.0
COG1204		766	Superfamily II helicase [General function predicti	100.0
KOG0951\|consensus		1674		100.0
PRK01172		674	ski2-like helicase; Provisional	100.0
smart00611		312	SEC63 Domain of unknown function in Sec63p, Brr2p	100.0
PF02889		314	Sec63: Sec63 Brl domain; InterPro: IPR004179 This	100.0
COG1202		830	Superfamily II helicase, archaea-specific [General	100.0
KOG0330\|consensus		476		100.0
KOG4434\|consensus		520		100.0
KOG0950\|consensus		1008		100.0
PRK13767		876	ATP-dependent helicase; Provisional	100.0
KOG0331\|consensus		519		100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
PTZ00110		545	helicase; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
KOG0338\|consensus		691		100.0
KOG0947\|consensus		1248		100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
KOG0948\|consensus		1041		100.0
KOG0333\|consensus		673		100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
COG1201		814	Lhr Lhr-like helicases [General function predictio	100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0952\|consensus		1230		100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0340\|consensus		442		100.0
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	100.0
KOG0345\|consensus		567		100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
KOG0342\|consensus		543		100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
PTZ00424		401	helicase 45; Provisional	100.0
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	100.0
KOG0343\|consensus		758		100.0
KOG0335\|consensus		482		100.0
KOG0348\|consensus		708		100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
KOG0326\|consensus		459		100.0
KOG0328\|consensus		400		100.0
KOG0336\|consensus		629		100.0
KOG0346\|consensus		569		100.0
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
KOG0341\|consensus		610		100.0
KOG0347\|consensus		731		100.0
KOG0332\|consensus		477		100.0
KOG0344\|consensus		593		99.97
KOG0339\|consensus		731		99.97
KOG0350\|consensus		620		99.97
KOG0334\|consensus		997		99.97
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.97
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.97
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.97
PRK10689		1147	transcription-repair coupling factor; Provisional	99.96
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.96
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.96
KOG4284\|consensus		980		99.96
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.96
COG1205		851	Distinct helicase family with a unique C-terminal	99.95
KOG0327\|consensus		397		99.95
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.95
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.95
PHA02653		675	RNA helicase NPH-II; Provisional	99.95
KOG0337\|consensus		529		99.95
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.94
KOG0949\|consensus		1330		99.94
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.94
KOG0354\|consensus		746		99.93
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.93
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.93
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.91
PRK05580		679	primosome assembly protein PriA; Validated	99.91
PRK09401		1176	reverse gyrase; Reviewed	99.91
PRK14701		1638	reverse gyrase; Provisional	99.91
PHA02558		501	uvsW UvsW helicase; Provisional	99.9
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.89
KOG0352\|consensus		641		99.89
KOG0351\|consensus		941		99.89
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.89
PRK13766		773	Hef nuclease; Provisional	99.88
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	99.87
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.87
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.87
KOG0349\|consensus		725		99.87
KOG0329\|consensus		387		99.86
PRK09694		878	helicase Cas3; Provisional	99.86
KOG0923\|consensus		902		99.85
KOG0353\|consensus		695		99.85
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.85
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.85
KOG0922\|consensus		674		99.84
KOG0924\|consensus		1042		99.82
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.8
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.75
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.74
COG1198		730	PriA Primosomal protein N' (replication factor Y)	99.73
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.72
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.72
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.72
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.7
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	99.69
KOG0926\|consensus		1172		99.69
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.69
smart00611		312	SEC63 Domain of unknown function in Sec63p, Brr2p	99.68
KOG0920\|consensus		924		99.67
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.66
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.66
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.63
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.62
KOG0925\|consensus		699		99.62
PF02889		314	Sec63: Sec63 Brl domain; InterPro: IPR004179 This	99.61
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.6
PRK04914		956	ATP-dependent helicase HepA; Validated	99.6
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.59
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.58
KOG4150\|consensus		1034		99.49
PRK05298		652	excinuclease ABC subunit B; Provisional	99.46
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.42
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.37
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.34
KOG0953\|consensus		700		99.3
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.29
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.28
KOG0331\|consensus		519		99.22
PRK14873		665	primosome assembly protein PriA; Provisional	99.2
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.17
PRK12326		764	preprotein translocase subunit SecA; Reviewed	99.13
KOG0330\|consensus		476		99.1
PTZ00110		545	helicase; Provisional	99.09
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.08
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.08
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.06
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.06
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	99.05
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.05
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.04
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.03
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.0
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.99
COG4096		875	HsdR Type I site-specific restriction-modification	98.98
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.96
KOG0344\|consensus		593		98.96
PRK13767		876	ATP-dependent helicase; Provisional	98.94
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	98.94
KOG0342\|consensus		543		98.94
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	98.93
KOG0338\|consensus		691		98.93
KOG0343\|consensus		758		98.91
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	98.91
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	98.91
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	98.91
PTZ00424		401	helicase 45; Provisional	98.89
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.88
KOG0326\|consensus		459		98.87
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	98.86
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	98.84
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	98.83
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.81
KOG0335\|consensus		482		98.81
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.81
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	98.79
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	98.79
KOG0350\|consensus		620		98.75
KOG0333\|consensus		673		98.74
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	98.71
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	98.68
smart00490		82	HELICc helicase superfamily c-terminal domain.	98.68
KOG0341\|consensus		610		98.66
KOG0340\|consensus		442		98.66
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	98.65
KOG0332\|consensus		477		98.61
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	98.6
PRK01172		674	ski2-like helicase; Provisional	98.57
KOG0328\|consensus		400		98.55
KOG0334\|consensus		997		98.55
KOG0345\|consensus		567		98.55
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	98.54
COG1201		814	Lhr Lhr-like helicases [General function predictio	98.48
KOG0347\|consensus		731		98.37
KOG4434\|consensus		520		98.34
KOG0336\|consensus		629		98.3
KOG1123\|consensus		776		98.29
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	98.27
PRK02362		737	ski2-like helicase; Provisional	98.26
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	98.25
KOG4284\|consensus		980		98.25
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	98.23
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	98.22
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.21
KOG0348\|consensus		708		98.17
PRK00254		720	ski2-like helicase; Provisional	98.16
COG1205		851	Distinct helicase family with a unique C-terminal	98.13
COG4889		1518	Predicted helicase [General function prediction on	98.12
KOG0327\|consensus		397		98.04
KOG0346\|consensus		569		98.04
PRK10689		1147	transcription-repair coupling factor; Provisional	98.03
PRK09401		1176	reverse gyrase; Reviewed	97.97
KOG0339\|consensus		731		97.89
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	97.89
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	97.88
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.82
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.82
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	97.81
PRK14701		1638	reverse gyrase; Provisional	97.75
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	97.72
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.69
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	97.62
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	97.56
COG1204		766	Superfamily II helicase [General function predicti	97.49
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	97.49
KOG0921\|consensus		1282		97.47
KOG1000\|consensus		689		97.41
KOG0387\|consensus		923		97.37
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	97.36
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	97.35
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.3
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	97.2
PHA02653		675	RNA helicase NPH-II; Provisional	97.2
KOG0390\|consensus		776		97.18
PRK13766		773	Hef nuclease; Provisional	97.18
PRK05580		679	primosome assembly protein PriA; Validated	97.15
KOG0352\|consensus		641		97.07
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.02
TIGR00595		505	priA primosomal protein N'. All proteins in this f	96.97
COG1202		830	Superfamily II helicase, archaea-specific [General	96.93
KOG0947\|consensus		1248		96.93
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	96.81
PHA02558		501	uvsW UvsW helicase; Provisional	96.8
KOG0385\|consensus		971		96.79
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	96.77
KOG0389\|consensus		941		96.72
PRK15483		986	type III restriction-modification system StyLTI en	96.6
KOG0948\|consensus		1041		96.56
KOG0337\|consensus		529		96.52
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	96.38
PF13245		76	AAA_19: Part of AAA domain	96.3
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	96.28
KOG0950\|consensus		1008		96.23
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.21
KOG2340\|consensus		698		96.14
COG0610		962	Type I site-specific restriction-modification syst	96.12
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.02
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	95.73
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.72
PRK09694		878	helicase Cas3; Provisional	95.67
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	95.64
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	95.43
KOG0351\|consensus		941		95.39
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	95.25
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	94.95
TIGR00376		637	DNA helicase, putative. The gene product may repre	94.58
PRK10536		262	hypothetical protein; Provisional	94.57
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	93.99
COG4962		355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	93.91
PRK13894		319	conjugal transfer ATPase TrbB; Provisional	93.73
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	93.51
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	93.45
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	93.39
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	93.37
KOG1803\|consensus		649		93.05
PRK13833		323	conjugal transfer protein TrbB; Provisional	93.03
PRK09200		790	preprotein translocase subunit SecA; Reviewed	92.43
KOG0329\|consensus		387		92.34
TIGR02782		299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	92.23
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	92.16
KOG0354\|consensus		746		91.86
KOG1802\|consensus		935		91.58
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	91.47
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	91.2
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	91.17
KOG0392\|consensus		1549		91.07
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	90.98
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	90.95
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	90.95
COG0630		312	VirB11 Type IV secretory pathway, VirB11 component	90.8
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	90.75
KOG0384\|consensus		1373		90.69
PRK05298		652	excinuclease ABC subunit B; Provisional	90.64
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	90.33
PRK13851		344	type IV secretion system protein VirB11; Provision	90.3
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	90.07
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	89.91
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	89.69
KOG0353\|consensus		695		88.76
PRK13900		332	type IV secretion system ATPase VirB11; Provisiona	88.68
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	88.61
PRK11054		684	helD DNA helicase IV; Provisional	88.5
KOG0923\|consensus		902		88.32
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	88.03
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	87.99
KOG0922\|consensus		674		87.33
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	87.2
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	87.08
TIGR02785		1232	addA_Gpos recombination helicase AddA, Firmicutes	86.7
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	86.22
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	85.97
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	85.96
PF01695		178	IstB_IS21: IstB-like ATP binding protein; InterPro	85.92
cd01130		186	VirB11-like_ATPase Type IV secretory pathway compo	85.91
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	85.7
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	85.7
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	85.17
KOG4439\|consensus		901		84.96
PRK10875		615	recD exonuclease V subunit alpha; Provisional	84.39
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	84.08
PRK12377		248	putative replication protein; Provisional	84.05
KOG0385\|consensus		971		83.98
PRK13107		908	preprotein translocase subunit SecA; Reviewed	83.74
PRK08181		269	transposase; Validated	83.31
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	83.28
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	83.21
PRK13889		988	conjugal transfer relaxase TraA; Provisional	83.16
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	82.47
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	82.44
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	81.94
KOG0388\|consensus		1185		81.58
TIGR03819		340	heli_sec_ATPase helicase/secretion neighborhood AT	81.54
PRK12904		830	preprotein translocase subunit SecA; Reviewed	81.16
PF00437		270	T2SE: Type II/IV secretion system protein; InterPr	81.03
KOG0953\|consensus		700		80.78
PRK06835		329	DNA replication protein DnaC; Validated	80.66
smart00487		201	DEXDc DEAD-like helicases superfamily.	80.58
COG1219		408	ClpX ATP-dependent protease Clp, ATPase subunit [P	80.57
KOG0989\|consensus		346		80.38

>KOG0951\|consensus	Back alignment and domain information

Probab=100.00  E-value=3.7e-198  Score=1811.49  Aligned_cols=1048  Identities=58%  Similarity=0.937  Sum_probs=951.9

Q ss_pred             HHHHHhhhcccCcccccc-ccccccCcccCcceeecCCCCCCCcccccccccccccccc---hhhhhchhhhhhccccCC
Q psy14582        172 LVNLGKKITDFGAEQKST-TAEENIDDTYGINVQFEESEDEDDEDTFGEVREAEELDDE---GEEARVNTAIHAENLAGG  247 (1689)
Q Consensus       172 L~~L~k~ItDy~~~~~~~-~~~~~~d~~~Gv~v~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  247 (1689)
                      +|+|+|+||||....+++ ..+..+++..||++.|++.+++++.+.++.++++.++|++   ++...+  ..+.......
T Consensus         1 lV~l~k~itdy~~~~~sk~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~--~kq~~~~~k~   78 (1674)
T KOG0951|consen    1 LVKLGKLITDYELEQDSKKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKF--VKQVPAIIKT   78 (1674)
T ss_pred             CccccccceeeeecCCchhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhh--heeccccccc
Confidence            589999999996654432 2344567778999999997776654555555554332222   111111  1111110111


Q ss_pred             CCCCCCCccCCCCCCCccCCHHHHHHHHhhhcCChhhHHHHHHHHHHHHhcCCChhHHHHHHHHhhCCCchHHHHHHHhc
Q psy14582        248 EDAEGTGRKKDKSLHPLDIDAYWLQRRLSKIYDDAMVSQAKAGEVLNILKSAGDDRDAENQLVLLLGYDCFDFIKMLKKY  327 (1689)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  327 (1689)
                      +...     ......+.+||++||||++++.|+++..+|+....+..+|+...++.++|++|+.++.|++|.|+++|.+|
T Consensus        79 el~~-----d~q~t~~~dIda~~LQR~irk~yela~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~l~kN  153 (1674)
T KOG0951|consen   79 ELLI-----DAQKTRESDIDAPWLQRKIRKVYELASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEFLRKN  153 (1674)
T ss_pred             hhhh-----hhhhcchhhhhHHHHHHHHHHHHhcchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHHHHhh
Confidence            1110     11113488999999999999999999999999999999999877999999999999999999999999999


Q ss_pred             hhhhhhhhhhccccCHHHHHHhhhhccCC-hhHHHHHHHHhcCCCCCCCcc--chHHHHhhhhhhhccCCCCCCCccccc
Q psy14582        328 RQMILYCTLLASSQSESERQKLRDTMSED-PALAKILRQLDTGKNEDGDAN--DSADARQSTSIRHQMGQGGGDGVAVVA  404 (1689)
Q Consensus       328 r~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (1689)
                      |++|+|||+|+++..++||-.+++.|+.- |.+..++.++.........+.  +...++.+........-...+ ...+.
T Consensus       154 r~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~~l~~~e~~~~~~~~ls~td-~~~v~  232 (1674)
T KOG0951|consen  154 RLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEKKLEKREELLVSVIALSKTD-VLGVL  232 (1674)
T ss_pred             cchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhhhhhccchhhhhhhhhcccc-ccccc
Confidence            99999999999999999999999999765 788888888765443322211  111111111111111111111 11256


Q ss_pred             CCccccCCcccccccCCCccccccccCCCCchhhccCCCceEecCCCCCCCCCCCCCccCCCCccHHHHHhccCCCCCCH
Q psy14582        405 GTRQVLDLEDLQFSSGSHFMSNKRCELPDGSFRKQRKGYEEVHVPALKPKPMGPDETLVPIDKLPRYVQHAFEDFKTLNR  484 (1689)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~~~~~~~yeev~vp~~~~~p~~~~~~l~~~~~Lp~~~~~~f~g~~~~tp  484 (1689)
                      ..++++|++.+.|.+|++.|++.+|.||+|+.+...++|++++||++++.|+...+.+..+..||+|.+.+|.|+.++|+
T Consensus       233 ~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNr  312 (1674)
T KOG0951|consen  233 EMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELPKWNQPAFFGKQSLNR  312 (1674)
T ss_pred             ccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCcchhhhhcccchhhhH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCeEEEEEccchhhhHhhhhcccccchhhc
Q psy14582        485 IQSRLCKSALESDENLLLCAPTGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRSLVQEMVGNFGKDEIHLL  564 (1689)
Q Consensus       485 iQ~~aip~al~~g~nvLv~APTGSGKT~a~lLpiL~~l~~~~~~~g~~~~~~~kvl~laPtreLa~Qi~~~f~kde~hll  564 (1689)
                      ||+++++.|+...+|+++|||||+|||+++++.||+.+.++.+.+|..+...++++|++||++||+++++.|++++    
T Consensus       313 IQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl----  388 (1674)
T KOG0951|consen  313 IQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL----  388 (1674)
T ss_pred             HHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc----
Confidence            9999999999889999999999999999999999999999998888888999999999999999999999998877    


Q ss_pred             cCCCchHHHHHHHHHHHHHhhcccCceEEEEeecCCCHH-HHHHHHhhCCCCCceeecCCCccccceeEEEEechhhHHH
Q psy14582        565 HDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYK-DVATLLRIKPETGLFYFDNSFRPVALEQQYIGVTEKKALK  643 (1689)
Q Consensus       565 ~de~g~~le~~~~~~~~~~~~~~~~~q~v~~SAT~~~~~-~v~~~l~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~l~  643 (1689)
                                                         .+++ .|.+.      ||                      +.+++
T Consensus       389 -----------------------------------a~~GI~V~El------Tg----------------------D~~l~  405 (1674)
T KOG0951|consen  389 -----------------------------------APLGITVLEL------TG----------------------DSQLG  405 (1674)
T ss_pred             -----------------------------------cccCcEEEEe------cc----------------------cccch
Confidence                                               3323 33333      44                      88888


Q ss_pred             HHHHhhhhHHHHHHhhccccceEEEeeeeeeeccCCccccccccCCCcceeEEEEeCCCCcccchhhhhhhccccCCcce
Q psy14582        644 RFQVMNDIVYEKVMEHAGRNQLLVSTLRVELTISPDFQWDEKLHGGSEGFWILVEDVDSEVVLHHEYFLLKSRYATDDHV  723 (1689)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~iiV~Tl~v~l~i~P~f~wd~~~~g~~e~f~i~veD~d~~~il~~e~~~l~~~~~~~~~~  723 (1689)
                      +.+++             ++|+||+|        |+ +||.++|                                    
T Consensus       406 ~~qie-------------eTqVIV~T--------PE-K~DiITR------------------------------------  427 (1674)
T KOG0951|consen  406 KEQIE-------------ETQVIVTT--------PE-KWDIITR------------------------------------  427 (1674)
T ss_pred             hhhhh-------------cceeEEec--------cc-hhhhhhc------------------------------------
Confidence            99999             99999999        99 9999999                                    


Q ss_pred             eEEEeeccCCCCccceeeeecccccccccccceeEeecCCCchHHHHHHHHHHHhhhccccCCCcCCCCcEEEEEccchh
Q psy14582        724 VKFFVPVFEPLPPQYFLRIVSDRWIGAETILPVSFRLPRGAGKTNVALLCMLQEIGKHINADGTINADEFKIIYVAPMRS  803 (1689)
Q Consensus       724 ~~f~vpi~~plpp~y~i~i~sd~wl~~e~~~pv~~~aPTGsGKT~~~lL~il~~i~~~~~~~~~i~~~~~kvVylaP~r~  803 (1689)
                                                            +|.+.++..+                                
T Consensus       428 --------------------------------------k~gdraY~ql--------------------------------  437 (1674)
T KOG0951|consen  428 --------------------------------------KSGDRAYEQL--------------------------------  437 (1674)
T ss_pred             --------------------------------------ccCchhHHHH--------------------------------
Confidence                                                  7888888877                                


Q ss_pred             HHHHHhhccccCCceeecCCchhHHHHHHHHHHHHHHhccccceEEEEecCCCCHHHHHHHhhcCCCccEEEecCCCccc
Q psy14582        804 LVQEMVGNFGKDEIHLLHDERGPVLEALIARTIRNIEATQEDVRLVGLSATLPNYKDVATLLRIKPETGLFYFDNSFRPV  883 (1689)
Q Consensus       804 L~~q~v~liIiDEiHll~d~rG~~lE~iv~r~~~~~~~~~~~~riV~lSATl~n~~dva~~L~~~~~~~~~~f~~~~Rpv  883 (1689)
                           ++++||||+|++||+|||++|++++|+.+..+......|++||||||||++|++.||++++ .++|+|+++|||+
T Consensus       438 -----vrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpv  511 (1674)
T KOG0951|consen  438 -----VRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPV  511 (1674)
T ss_pred             -----HHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcC
Confidence                 9999999999999999999999999999999999999999999999999999999999998 7799999999999


Q ss_pred             ceEEEEEeechhhHHHHHHHhhHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHhhhhccccchhhhcCchhHHHHH
Q psy14582        884 ALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGRNQLLVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLR  963 (1689)
Q Consensus       884 pL~~~~~~~~~~~~~~~~~~m~~~~~~~i~~~~~~~~vLVFv~srk~~~~~a~~L~~~~~~~~~l~~fl~~~~~~~e~l~  963 (1689)
                      ||.|+|+|++.++..+++++||+.||++++++++.+|||||||||++|.++|+.|++.+.+.+.++.|+++++++.++++
T Consensus       512 PL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr  591 (1674)
T KOG0951|consen  512 PLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR  591 (1674)
T ss_pred             CccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccchhhhcccCCceeEeccCCCHHHHHHHHHHHhcCCeEEEEEcchhccCCCCCCcceeehhhHHHHhhcccceE
Q psy14582        964 TEADQVKNGELRDLLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVDRTLVEDLFADRHIQV 1043 (1689)
Q Consensus       964 ~~~~~~~~~~L~~~l~~Gi~~hHagl~~~dR~~ve~~F~~g~i~VLVaT~vl~rGIDIp~V~~V~R~~~~~~f~~g~i~v 1043 (1689)
                      .++++.++..|+++|++|||+|||||++.+|..+|++|++|+++||                                  
T Consensus       592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvl----------------------------------  637 (1674)
T KOG0951|consen  592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVL----------------------------------  637 (1674)
T ss_pred             hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEE----------------------------------
Confidence            9999999999999999999999999999999999999999999999                                  


Q ss_pred             EEEcccccccCCCCCceEEEeceeeecCCCCcceecCHHHHHHHhcccCCCCCCCccEEEEEecCCcHHHHHHHhhCcCC
Q psy14582       1044 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWVELGALDVLQMLGRAGRPQYDTKGEGVLITNHSELQYYLSLLNHQLP 1123 (1689)
Q Consensus      1044 LVaT~TLa~GvNLPa~~VII~gt~~yd~~~~~~~~~s~~d~lQm~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 1123 (1689)
                       |||+|||||||||||+|||+||++|||++|+|.++++.|++||+||||||++|..|+++|++.+++.++|.+++|+++|
T Consensus       638 -vstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLp  716 (1674)
T KOG0951|consen  638 -VSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP  716 (1674)
T ss_pred             -EeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence             9999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhhhhhhccccChHHHHHHHhhhhhhhhhccCCcccCCCcccccCChhhhhhhHHHHHHHHHHHHHcC
Q psy14582       1124 VESQMISKLPDMLNAEIVLGTVQNLKDAVTWLGYTYLYIRMLRAPNLYGISHDALKEDPLLECHRADLIHTAALHLERSG 1203 (1689)
Q Consensus      1124 ieS~l~~~l~d~lnaeI~~g~i~~~~d~~~~l~~T~~y~Rl~~nP~~Yg~~~~~~~~d~~l~~~~~~lv~~al~~L~~~~ 1203 (1689)
                      |||++.++|.|.+||||++| +++.+|+++|++|||||+||.+||++||++++..  |..+++.+.+++|+|+..|+++|
T Consensus       717 iesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~--d~~le~~r~~lvhsa~~ll~~~~  793 (1674)
T KOG0951|consen  717 IESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEAS--DRLLEQRRADLVHSAATLLDKAG  793 (1674)
T ss_pred             ChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccc--hHHHHHHHhhhHHHHHhhHhhcC
Confidence            99999999999999999999 9999999999999999999999999999998865  88899999999999999999999


Q ss_pred             CceeccCCCceeeccccccceecccchhhHHHHHHhhCCCCCHHHHHHHHhcCcccccCcCChHHHHHHHHHHhhCCCCC
Q psy14582       1204 LIKYDRKSGHMQVTELGRIASHYYCTHETMATYNQLLKPTLSEIELFRVFSLSGEFRHITVREEEKLELQKLMERAPIPI 1283 (1689)
Q Consensus      1204 ~i~~~~~~~~~~~t~lG~ias~yyi~~~t~~~~~~~l~~~~~~~~ll~i~s~s~Ef~~i~vR~~E~~~l~~l~~~~p~~~ 1283 (1689)
                      +|.||+.+|.+++|++|+|||+|||.|.+|..|++.|+++|+++++++++++|.||++++||++|+.+|++|++++|||+
T Consensus       794 li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpi  873 (1674)
T KOG0951|consen  794 LIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPI  873 (1674)
T ss_pred             ccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhhhhcccCCcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHHhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhccCCCCCc
Q psy14582       1284 KESTDEPSAKVNILLQAYISQLKLEGFALMSDMVFVTQSAARLMRAIFEIVLYRGWAQLADKALSLCKMVDRRMWQSMSP 1363 (1689)
Q Consensus      1284 ~~~~~~~~~K~~~Llqa~is~~~l~~~~l~~d~~~i~~~a~rl~~a~~ei~~~~~~~~~a~~~l~L~k~i~~~~W~~~~p 1363 (1689)
                      ++++++|++|+|+|||+|||+++++||+|.+||+||.|+|+|++||+|||++.+||+.+|..+++||||+++|||++++|
T Consensus       874 re~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~v~~r~w~~~~p  953 (1674)
T KOG0951|consen  874 RENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKMVEKRMWPTQTP  953 (1674)
T ss_pred             hhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhHhhhhcccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHHHHhcCCCchhhccCChhhhhhhhcCChhhHHHHHHHHhCCcceEEEEeeccccceEEEEEeecCCC
Q psy14582       1364 LRQFRKIPEEIIKKIEKKNFPWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELATHIQPITRSTLRVELTISPDF 1443 (1689)
Q Consensus      1364 LrQ~~~i~~~~i~~~~~~~~~~~~l~dl~~~el~~ll~~~~~g~~i~~~~~~~P~l~l~~~~~pi~~~~~~~~~~i~~~~ 1443 (1689)
                      ||||+++|.++++++|++.++|.+++++++.|++++++.|++|+.++.++++||++.+++++|||||+.++|+|+|+|+|
T Consensus       954 lrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~~~~~~l~i~~~f 1033 (1674)
T KOG0951|consen  954 LRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRSVYRVELTITPDF 1033 (1674)
T ss_pred             hhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeeeEEEEEEEEeecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccccceEEEEEeccchh
Q psy14582       1444 QWDEKLHGGSEGFWILVEDVDSE 1466 (1689)
Q Consensus      1444 ~~~~~~~~~~e~~wi~v~d~~~~ 1466 (1689)
                      .||+++||..|+|||+|||++|+
T Consensus      1034 ~wd~~vh~~~e~F~i~ved~dge 1056 (1674)
T KOG0951|consen 1034 DWDDKVHGSVEPFWIIVEDTDGE 1056 (1674)
T ss_pred             cchhhhcccccceEEEEEccCcc
Confidence            99999999999999999999999

>KOG0952\|consensus	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>KOG4434\|consensus	Back alignment and domain information

>KOG0950\|consensus	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>KOG0331\|consensus	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>KOG0338\|consensus	Back alignment and domain information

>KOG0947\|consensus	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>KOG0948\|consensus	Back alignment and domain information

>KOG0333\|consensus	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0340\|consensus	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0345\|consensus	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>KOG0342\|consensus	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0343\|consensus	Back alignment and domain information

>KOG0335\|consensus	Back alignment and domain information

>KOG0348\|consensus	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>KOG0326\|consensus	Back alignment and domain information

>KOG0328\|consensus	Back alignment and domain information

>KOG0336\|consensus	Back alignment and domain information

>KOG0346\|consensus	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>KOG0341\|consensus	Back alignment and domain information

>KOG0347\|consensus	Back alignment and domain information

>KOG0332\|consensus	Back alignment and domain information

>KOG0344\|consensus	Back alignment and domain information

>KOG0339\|consensus	Back alignment and domain information

>KOG0350\|consensus	Back alignment and domain information

>KOG0334\|consensus	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG4284\|consensus	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0327\|consensus	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0337\|consensus	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0949\|consensus	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0354\|consensus	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0352\|consensus	Back alignment and domain information

>KOG0351\|consensus	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0349\|consensus	Back alignment and domain information

>KOG0329\|consensus	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>KOG0923\|consensus	Back alignment and domain information

>KOG0353\|consensus	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>KOG0922\|consensus	Back alignment and domain information

>KOG0924\|consensus	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0926\|consensus	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>KOG0920\|consensus	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0925\|consensus	Back alignment and domain information

>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>KOG4150\|consensus	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0953\|consensus	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0331\|consensus	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0344\|consensus	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>KOG0342\|consensus	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0338\|consensus	Back alignment and domain information

>KOG0343\|consensus	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG0326\|consensus	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0335\|consensus	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0350\|consensus	Back alignment and domain information

>KOG0333\|consensus	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0341\|consensus	Back alignment and domain information

>KOG0340\|consensus	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>KOG0332\|consensus	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0328\|consensus	Back alignment and domain information

>KOG0334\|consensus	Back alignment and domain information

>KOG0345\|consensus	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>KOG0347\|consensus	Back alignment and domain information

>KOG4434\|consensus	Back alignment and domain information

>KOG0336\|consensus	Back alignment and domain information

>KOG1123\|consensus	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG4284\|consensus	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0348\|consensus	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0327\|consensus	Back alignment and domain information

>KOG0346\|consensus	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0339\|consensus	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0921\|consensus	Back alignment and domain information

>KOG1000\|consensus	Back alignment and domain information

>KOG0387\|consensus	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>KOG0390\|consensus	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>KOG0352\|consensus	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0947\|consensus	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>KOG0385\|consensus	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG0389\|consensus	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>KOG0948\|consensus	Back alignment and domain information

>KOG0337\|consensus	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0950\|consensus	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>KOG2340\|consensus	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0351\|consensus	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK13894 conjugal transfer ATPase TrbB; Provisional	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG1803\|consensus	Back alignment and domain information

>PRK13833 conjugal transfer protein TrbB; Provisional	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0329\|consensus	Back alignment and domain information

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0354\|consensus	Back alignment and domain information

>KOG1802\|consensus	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0392\|consensus	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0384\|consensus	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>PRK13851 type IV secretion system protein VirB11; Provisional	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>KOG0353\|consensus	Back alignment and domain information

>PRK13900 type IV secretion system ATPase VirB11; Provisional	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>KOG0923\|consensus	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>KOG0922\|consensus	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

Back alignment and domain information

>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif	Back alignment and domain information

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG4439\|consensus	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK12377 putative replication protein; Provisional	Back alignment and domain information

>KOG0385\|consensus	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG0388\|consensus	Back alignment and domain information

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]	Back alignment and domain information

>KOG0953\|consensus	Back alignment and domain information

>PRK06835 DNA replication protein DnaC; Validated	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0989\|consensus	Back alignment and domain information

Homologous Structure Templates