Psyllid ID: psy14602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFRCR
Secondary Structure (PSIPRED)
cccccccEEEEEcccccccccccccccHHHHcHHHHHHcccccccccccEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEccEEcccccccccc
Coil and Loop (DISEMBL)
mehssglrfmsscdcgrtqaqredpfslrEANYEFYQNVGVEcgcvalehypfpvfqpstedfrcr
Flexible Loop (DISEMBL)
mehssglrfmsscdcgrtqaqredpFSLREANYEFYQNVGVECGCVALEHypfpvfqpstedfrcr
Low Complexity Region (SEG)
MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFRCR
Disordered region (IsUnstruct)
**************************SLREANYEFYQNVGVECGCVALEHYPFPVFQ*********
Disordered Region (DISOPRED)
*****GL*FMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQP********
Disordered Region (DISEMBL)
**********SSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFRCR
Disordered Region (DISPRO)
****SGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPS*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFRCR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
Q17G65	916	Protein SMG8 OS=Aedes aeg	N/A	N/A	0.984	0.070	0.575	1e-17
B0W730	912	Protein SMG8 OS=Culex qui	N/A	N/A	0.954	0.069	0.562	4e-17
B3N538	949	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.067	0.553	8e-17
Q9VKQ6	944	Protein SMG8 OS=Drosophil	yes	N/A	0.969	0.067	0.538	3e-16
B4HWV2	927	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.069	0.523	6e-16
B4MV81	953	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.067	0.538	9e-16
B4P0U1	950	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.067	0.523	1e-15
B4KKN5	967	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.066	0.523	1e-15
B4Q9T2	944	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.067	0.523	2e-15
B3MJV4	939	Protein SMG8 OS=Drosophil	N/A	N/A	0.969	0.068	0.523	2e-15

>sp|Q17G65|SMG8_AEDAE Protein SMG8 OS=Aedes aegypti GN=AAEL003157 PE=3 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPS 59
           M+HSSG+ F+S+C+CGRTQ  REDP+++R+ANYEFYQ +   C  C  LE   FPVF+PS
Sbjct: 487 MDHSSGVVFVSACNCGRTQGHREDPYTIRQANYEFYQLIAKSCSNCTLLERIKFPVFEPS 546

Query: 60  TEDFRC 65
           + DFR 
Sbjct: 547 SSDFRA 552

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.
Aedes aegypti (taxid: 7159)

>sp|B0W730|SMG8_CULQU Protein SMG8 OS=Culex quinquefasciatus GN=CPIJ003128 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPST 60
           EHSSG+ F+S+C+CGRTQ  REDP+++R+ NY+FYQ +   C  C  LE   FPVF+PS+
Sbjct: 486 EHSSGVIFVSACNCGRTQGHREDPYTIRQGNYDFYQIIAKSCSSCNVLERVKFPVFEPSS 545

Query: 61  EDFR 64
            DFR
Sbjct: 546 NDFR 549

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Culex quinquefasciatus (taxid: 7176)

>sp|B3N538|SMG8_DROER Protein SMG8 OS=Drosophila erecta GN=GG10361 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+S +  +SSC+CGRTQ +REDPFS+R+ANYEFY+++   C  CV ++HY FPVF+PS 
Sbjct: 485 KHNSAVIHISSCNCGRTQGRREDPFSMRQANYEFYEHIAQMCNLCVKVKHYKFPVFEPSV 544

Query: 61  EDFRC 65
            D+R 
Sbjct: 545 SDYRA 549

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila erecta (taxid: 7220)

>sp|Q9VKQ6|SMG8_DROME Protein SMG8 OS=Drosophila melanogaster GN=CG6729 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y FP+F+PS 
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 544

Query: 61  EDFRC 65
            D+R 
Sbjct: 545 SDYRA 549

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila melanogaster (taxid: 7227)

>sp|B4HWV2|SMG8_DROSE Protein SMG8 OS=Drosophila sechellia GN=GM11479 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 51/65 (78%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +S+C+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y FP+F+PS 
Sbjct: 468 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 527

Query: 61  EDFRC 65
            D+R 
Sbjct: 528 SDYRA 532

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila sechellia (taxid: 7238)

>sp|B4MV81|SMG8_DROWI Protein SMG8 OS=Drosophila willistoni GN=GK15451 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+ +   C  CV ++ Y FP+F+PS 
Sbjct: 491 KHASGIIHVSSCNCGRTQGRREDPFTLRQANYEFYEYMAQICNLCVKVKQYQFPIFEPSV 550

Query: 61  EDFRC 65
            D+R 
Sbjct: 551 SDYRA 555

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila willistoni (taxid: 7260)

>sp|B4P0U1|SMG8_DROYA Protein SMG8 OS=Drosophila yakuba GN=GE13372 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y  P+F+PS 
Sbjct: 485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQLPIFEPSV 544

Query: 61  EDFRC 65
            D+R 
Sbjct: 545 SDYRA 549

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila yakuba (taxid: 7245)

>sp|B4KKN5|SMG8_DROMO Protein SMG8 OS=Drosophila mojavensis GN=GI17817 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +HSSG+  +SSC+CGRTQ +REDPF+LR+ANY++Y+ + V C  CV ++ + FP+F PS 
Sbjct: 482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEQLAVMCNLCVKVKKFQFPLFTPSI 541

Query: 61  EDFRC 65
            D+R 
Sbjct: 542 SDYRA 546

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila mojavensis (taxid: 7230)

>sp|B4Q9T2|SMG8_DROSI Protein SMG8 OS=Drosophila simulans GN=GD22229 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +S+C+CGRTQ +REDPF+LR+ANYEFY+ +   C  CV ++ Y FP+F+PS 
Sbjct: 485 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYELIAQMCNLCVKVKQYQFPIFEPSV 544

Query: 61  EDFRC 65
            D+R 
Sbjct: 545 SDYRA 549

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila simulans (taxid: 7240)

>sp|B3MJV4|SMG8_DROAN Protein SMG8 OS=Drosophila ananassae GN=GF14070 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 50/65 (76%), Gaps = 1/65 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
           +H+SG+  +SSC+CGRTQ +REDPF+LR+ANY+FY+ +   C  CV ++ Y FP+F+PS 
Sbjct: 483 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYDFYELIAQICNLCVKVKQYQFPIFEPSV 542

Query: 61  EDFRC 65
            D+R 
Sbjct: 543 SDYRA 547

Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing SMG1 and recruited to stalled ribosomes.

Drosophila ananassae (taxid: 7217)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
157134902	916	hypothetical protein AaeL_AAEL003157 [Ae	0.984	0.070	0.575	4e-16
345479316	905	PREDICTED: protein SMG8-like [Nasonia vi	0.984	0.071	0.538	1e-15
350411563	907	PREDICTED: protein SMG8-like [Bombus imp	0.954	0.069	0.571	1e-15
340729650	907	PREDICTED: protein SMG8-like [Bombus ter	0.954	0.069	0.571	1e-15
380017201	904	PREDICTED: protein SMG8-like [Apis flore	0.954	0.069	0.571	1e-15
328778764	904	PREDICTED: protein SMG8-like [Apis melli	0.954	0.069	0.571	1e-15
170033296	912	conserved hypothetical protein [Culex qu	0.954	0.069	0.562	1e-15
328711378	929	PREDICTED: protein SMG8-like [Acyrthosip	0.969	0.068	0.546	2e-15
307196259	908	UPF0487 protein C17orf71-like protein [H	0.969	0.070	0.562	2e-15
383851187	907	PREDICTED: protein SMG8-like [Megachile	0.954	0.069	0.571	3e-15

>gi|157134902|ref|XP_001656499.1| hypothetical protein AaeL_AAEL003157 [Aedes aegypti] gi|121957012|sp|Q17G65.1|SMG8_AEDAE RecName: Full=Protein SMG8; AltName: Full=Protein smg-8 homolog gi|108881359|gb|EAT45584.1| AAEL003157-PA [Aedes aegypti]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPS 59
           M+HSSG+ F+S+C+CGRTQ  REDP+++R+ANYEFYQ +   C  C  LE   FPVF+PS
Sbjct: 487 MDHSSGVVFVSACNCGRTQGHREDPYTIRQANYEFYQLIAKSCSNCTLLERIKFPVFEPS 546

Query: 60  TEDFRC 65
           + DFR 
Sbjct: 547 SSDFRA 552

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479316|ref|XP_001605859.2| PREDICTED: protein SMG8-like [Nasonia vitripennis]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 51/65 (78%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
           MEH SG+R++ +C+CGR Q  REDPF+L++ANY+++Q + ++CGC  LE   FPVFQPST
Sbjct: 480 MEHCSGVRYICACNCGRCQGSREDPFNLKQANYDYFQMLAIQCGCNQLESIQFPVFQPST 539

Query: 61  EDFRC 65
            ++R 
Sbjct: 540 HNYRA 544

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411563|ref|XP_003489391.1| PREDICTED: protein SMG8-like [Bombus impatiens]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q  REDPFSLR+ANY+++Q +  +CGC  LE+  FPVFQPST 
Sbjct: 481 EHCSGVRYICACNCGRCQGSREDPFSLRQANYDYFQMLAKQCGCAQLENIQFPVFQPSTH 540

Query: 62  DFR 64
           ++R
Sbjct: 541 NYR 543

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729650|ref|XP_003403110.1| PREDICTED: protein SMG8-like [Bombus terrestris]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q  REDPFSLR+ANY+++Q +  +CGC  LE+  FPVFQPST 
Sbjct: 481 EHCSGVRYICACNCGRCQGSREDPFSLRQANYDYFQMLAKQCGCAQLENIQFPVFQPSTH 540

Query: 62  DFR 64
           ++R
Sbjct: 541 NYR 543

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017201|ref|XP_003692549.1| PREDICTED: protein SMG8-like [Apis florea]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q  REDPFSLR+ANY+++Q +  +CGC  LE+  FPVFQPST 
Sbjct: 481 EHCSGVRYICACNCGRCQGSREDPFSLRQANYDYFQILAKQCGCAQLENIQFPVFQPSTH 540

Query: 62  DFR 64
           ++R
Sbjct: 541 NYR 543

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778764|ref|XP_001122102.2| PREDICTED: protein SMG8-like [Apis mellifera]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q  REDPFSLR+ANY+++Q +  +CGC  LE+  FPVFQPST 
Sbjct: 481 EHCSGVRYICACNCGRCQGSREDPFSLRQANYDYFQILAKQCGCAQLENIQFPVFQPSTH 540

Query: 62  DFR 64
           ++R
Sbjct: 541 NYR 543

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033296|ref|XP_001844514.1| conserved hypothetical protein [Culex quinquefasciatus] gi|239977613|sp|B0W730.1|SMG8_CULQU RecName: Full=Protein SMG8; AltName: Full=Protein smg-8 homolog gi|167873921|gb|EDS37304.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/64 (56%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVEC-GCVALEHYPFPVFQPST 60
           EHSSG+ F+S+C+CGRTQ  REDP+++R+ NY+FYQ +   C  C  LE   FPVF+PS+
Sbjct: 486 EHSSGVIFVSACNCGRTQGHREDPYTIRQGNYDFYQIIAKSCSSCNVLERVKFPVFEPSS 545

Query: 61  EDFR 64
            DFR
Sbjct: 546 NDFR 549

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711378|ref|XP_001942644.2| PREDICTED: protein SMG8-like [Acyrthosiphon pisum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 48/64 (75%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
           MEHSS + ++S+C+CG  Q  REDPF++R ANY+FYQ +  +C C  L+   FPVFQPST
Sbjct: 502 MEHSSSVMYLSACNCGHKQGTREDPFTIRTANYDFYQIMANDCVCGCLDRINFPVFQPST 561

Query: 61  EDFR 64
           +D+R
Sbjct: 562 QDYR 565

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196259|gb|EFN77905.1| UPF0487 protein C17orf71-like protein [Harpegnathos saltator]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q+ REDPFSL++ANY+++Q +  +CGC  LE   FPVFQPST 
Sbjct: 481 EHCSGVRYVCACNCGRYQSSREDPFSLKQANYDYFQLLAKQCGCTQLESIQFPVFQPSTH 540

Query: 62  DFRC 65
           +FR 
Sbjct: 541 NFRA 544

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851187|ref|XP_003701120.1| PREDICTED: protein SMG8-like [Megachile rotundata]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 49/63 (77%)

Query: 2   EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTE 61
           EH SG+R++ +C+CGR Q  REDPFSLR+ANY+++Q +  +CGC  LE   FPVFQPST 
Sbjct: 481 EHCSGVRYICACNCGRCQGSREDPFSLRQANYDYFQILAKQCGCAQLESIQFPVFQPSTH 540

Query: 62  DFR 64
           ++R
Sbjct: 541 NYR 543

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
UNIPROTKB|Q17G65	916	AAEL003157 "Protein SMG8" [Aed	0.969	0.069	0.584	4.1e-17
UNIPROTKB|B3N538	949	GG10361 "Protein SMG8" [Drosop	0.954	0.066	0.562	1.1e-16
FB|FBgn0032296	944	CG6729 [Drosophila melanogaste	0.954	0.066	0.546	3e-16
UNIPROTKB|B0W730	912	CPIJ003128 "Protein SMG8" [Cul	0.954	0.069	0.562	6e-16
UNIPROTKB|B4HWV2	927	GM11479 "Protein SMG8" [Drosop	0.954	0.067	0.531	6.2e-16
UNIPROTKB|B4MV81	953	GK15451 "Protein SMG8" [Drosop	0.954	0.066	0.546	1.1e-15
UNIPROTKB|B4P0U1	950	GE13372 "Protein SMG8" [Drosop	0.954	0.066	0.531	1.3e-15
UNIPROTKB|B4Q9T2	944	GD22229 "Protein SMG8" [Drosop	0.954	0.066	0.531	1.7e-15
UNIPROTKB|B3MJV4	939	GF14070 "Protein SMG8" [Drosop	0.954	0.067	0.531	2.2e-15
UNIPROTKB|B4KKN5	967	GI17817 "Protein SMG8" [Drosop	0.954	0.065	0.531	3.7e-15

UNIPROTKB|Q17G65 AAEL003157 "Protein SMG8" [Aedes aegypti (taxid:7159)]

 Score = 222 (83.2 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query:     1 MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPS 59
             M+HSSG+ F+S+C+CGRTQ  REDP+++R+ANYEFYQ +   C  C  LE   FPVF+PS
Sbjct:   487 MDHSSGVVFVSACNCGRTQGHREDPYTIRQANYEFYQLIAKSCSNCTLLERIKFPVFEPS 546

Query:    60 TEDFR 64
             + DFR
Sbjct:   547 SSDFR 551

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B3N538 GG10361 "Protein SMG8" [Drosophila erecta (taxid:7220)]

 Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 36/64 (56%), Positives = 51/64 (79%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+S +  +SSC+CGRTQ +REDPFS+R+ANYEFY+++   C  CV ++HY FPVF+PS 
Sbjct:   485 KHNSAVIHISSCNCGRTQGRREDPFSMRQANYEFYEHIAQMCNLCVKVKHYKFPVFEPSV 544

Query:    61 EDFR 64
              D+R
Sbjct:   545 SDYR 548

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0032296 CG6729 [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 35/64 (54%), Positives = 51/64 (79%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y FP+F+PS 
Sbjct:   485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 544

Query:    61 EDFR 64
              D+R
Sbjct:   545 SDYR 548

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|B0W730 CPIJ003128 "Protein SMG8" [Culex quinquefasciatus (taxid:7176)]

 Score = 211 (79.3 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             EHSSG+ F+S+C+CGRTQ  REDP+++R+ NY+FYQ +   C  C  LE   FPVF+PS+
Sbjct:   486 EHSSGVIFVSACNCGRTQGHREDPYTIRQGNYDFYQIIAKSCSSCNVLERVKFPVFEPSS 545

Query:    61 EDFR 64
              DFR
Sbjct:   546 NDFR 549

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4HWV2 GM11479 "Protein SMG8" [Drosophila sechellia (taxid:7238)]

 Score = 211 (79.3 bits), Expect = 6.2e-16, P = 6.2e-16
 Identities = 34/64 (53%), Positives = 51/64 (79%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +S+C+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y FP+F+PS 
Sbjct:   468 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSV 527

Query:    61 EDFR 64
              D+R
Sbjct:   528 SDYR 531

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4MV81 GK15451 "Protein SMG8" [Drosophila willistoni (taxid:7260)]

 Score = 209 (78.6 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+ +   C  CV ++ Y FP+F+PS 
Sbjct:   491 KHASGIIHVSSCNCGRTQGRREDPFTLRQANYEFYEYMAQICNLCVKVKQYQFPIFEPSV 550

Query:    61 EDFR 64
              D+R
Sbjct:   551 SDYR 554

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4P0U1 GE13372 "Protein SMG8" [Drosophila yakuba (taxid:7245)]

 Score = 208 (78.3 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 34/64 (53%), Positives = 50/64 (78%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +SSC+CGRTQ +REDPF+LR+ANYEFY+++   C  CV ++ Y  P+F+PS 
Sbjct:   485 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQLPIFEPSV 544

Query:    61 EDFR 64
              D+R
Sbjct:   545 SDYR 548

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4Q9T2 GD22229 "Protein SMG8" [Drosophila simulans (taxid:7240)]

 Score = 207 (77.9 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 34/64 (53%), Positives = 50/64 (78%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +S+C+CGRTQ +REDPF+LR+ANYEFY+ +   C  CV ++ Y FP+F+PS 
Sbjct:   485 KHNSGVIHISTCNCGRTQGRREDPFNLRQANYEFYELIAQMCNLCVKVKQYQFPIFEPSV 544

Query:    61 EDFR 64
              D+R
Sbjct:   545 SDYR 548

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B3MJV4 GF14070 "Protein SMG8" [Drosophila ananassae (taxid:7217)]

 Score = 206 (77.6 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 34/64 (53%), Positives = 50/64 (78%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +H+SG+  +SSC+CGRTQ +REDPF+LR+ANY+FY+ +   C  CV ++ Y FP+F+PS 
Sbjct:   483 KHNSGVIHISSCNCGRTQGRREDPFNLRQANYDFYELIAQICNLCVKVKQYQFPIFEPSV 542

Query:    61 EDFR 64
              D+R
Sbjct:   543 SDYR 546

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4KKN5 GI17817 "Protein SMG8" [Drosophila mojavensis (taxid:7230)]

 Score = 204 (76.9 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 34/64 (53%), Positives = 50/64 (78%)

Query:     2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECG-CVALEHYPFPVFQPST 60
             +HSSG+  +SSC+CGRTQ +REDPF+LR+ANY++Y+ + V C  CV ++ + FP+F PS 
Sbjct:   482 KHSSGIVHISSCNCGRTQGRREDPFTLRQANYDYYEQLAVMCNLCVKVKKFQFPLFTPSI 541

Query:    61 EDFR 64
              D+R
Sbjct:   542 SDYR 545

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VKQ6	SMG8_DROME	No assigned EC number	0.5384	0.9696	0.0677	yes	N/A
Q8VE18	SMG8_MOUSE	No assigned EC number	0.5166	0.8939	0.0595	yes	N/A
Q0VA04	SMG8_XENTR	No assigned EC number	0.5333	0.8939	0.0644	yes	N/A
B5E0H4	SMG8_DROPS	No assigned EC number	0.5076	0.9696	0.0671	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
pfam10220	890	pfam10220, DUF2146, Uncharacterized conserved prot	1e-24

>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146)

 Score = 94.2 bits (234), Expect = 1e-24
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 1   MEHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPST 60
             H+SG+  +SSC+CGR Q  REDPF++++ANY+FYQ++  +C CV L  Y FP+FQPS+
Sbjct: 485 QAHNSGVIHVSSCNCGRKQGHREDPFTIKQANYDFYQHIAFKC-CVKLWRYQFPIFQPSS 543

Query: 61  EDFR 64
            D R
Sbjct: 544 SDIR 547

This is a family of proteins conserved from plants to humans. In Dictyostelium it is annotated as Mss11p but this could not be confirmed. Mss11p is required for the activation of pseudo-hyphal and invasive growth by Ste12p in yeast. Length = 890

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG3692|consensus	881		99.96
PF10220	895	DUF2146: Uncharacterized conserved protein (DUF214	99.96

>KOG3692|consensus

Probab=99.96  E-value=2.5e-31  Score=216.68  Aligned_cols=62  Identities=53%  Similarity=1.075  Sum_probs=60.8

Q ss_pred             CcCCCceeeeecccCccccccCCCCchhhhchHHHHcccceeccccceeeeeccccCCCCCcc
Q psy14602          2 EHSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFR   64 (66)
Q Consensus         2 ~HsSg~~~~saCnCGR~q~~ReDPF~lk~AN~~FY~~~~~~C~C~~l~~i~Fpvf~ps~~d~~   64 (66)
                      .|+||++++|||||||+|+.|+|||+||+|||||||+++++| |++||+|||||||||++|++
T Consensus       481 ~Hns~~~~is~CnCGRkQ~~R~dPF~ik~ANydFY~h~~~kC-C~kl~~yqFpvfeps~~D~~  542 (881)
T KOG3692|consen  481 YHNSRARSISACNCGRKQAPRDDPFDIKAANYDFYQHLEEKC-CGKLDHYQFPVFEPSTPDPA  542 (881)
T ss_pred             eccccceeeeeeccccccCCCCCCcchhhccchHHHhhHHHH-hhhHhhccccccCCCCCCcc
Confidence            699999999999999999999999999999999999999999 99999999999999999985

>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex

Probab=99.96  E-value=1.3e-30  Score=214.31  Aligned_cols=62  Identities=63%  Similarity=1.265  Sum_probs=60.6

Q ss_pred             cCCCceeeeecccCccccccCCCCchhhhchHHHHcccceeccccceeeeeccccCCCCCccc
Q psy14602          3 HSSGLRFMSSCDCGRTQAQREDPFSLREANYEFYQNVGVECGCVALEHYPFPVFQPSTEDFRC   65 (66)
Q Consensus         3 HsSg~~~~saCnCGR~q~~ReDPF~lk~AN~~FY~~~~~~C~C~~l~~i~Fpvf~ps~~d~~~   65 (66)
                      |+||++++|||||||+|++|+|||+||+||++||++++++| |++|++|+|||||||++|++-
T Consensus       487 H~Sg~~~~saCnCGr~q~~R~DPF~l~~AN~~FY~~~~~~C-C~~l~~~~Fpvfqps~~d~~~  548 (895)
T PF10220_consen  487 HSSGVRFLSACNCGRSQGLREDPFDLKEANYDFYQHLEFKC-CSKLERIQFPVFQPSTPDYRA  548 (895)
T ss_pred             ccCCCceeeecCCCCccCCCCCCcCHHHHhHHHHHHHHHHH-HHHHhhcccceecCCCCchhh
Confidence            99999999999999999999999999999999999999999 999999999999999999863

They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00