Psyllid ID: psy14636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
QDNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERKDA
ccccccccccccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEEcccHHHHHHHHcccccEEcccccccccHHHHHHHHHHccccccccccEEEEEEEccEEEEEEEccccEEEccccccEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccEEEcccccccccEEEEccccccEEEEEEEcccccEEEEEEEcccEEEEEEccEEEcccEEEEEEEEEccccccHHHHHHHHHccccccccccccccEEEEEEEEcccccccccccEEEEEEccccccccccccccccccccEEEEEEccccccccccEEEEEcccccEEEEcccccccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEccccccccEEEEEccccccccccccccccccccc
ccccccccccccEEEEEccHHcccEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEEcccccEEccccccccccEEccccEEEEEcEEccccccccccEEEEcccccccccEEEEEEcccccccccccccccccccEEEEcccccccEEEEEEEccccccEEEEEccccEEEEEEEccEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccHHHHHccccccccEccccccccEEEEEEEEEcccccccccEEEEEEEcccEEEEEcccccccccEEEccccccHccccEEEEEEEEcccccccEEEEEEccccccccEEEEEcccccccccEEEEEcHHHHcc
qdnsevdqpvqgtvegvipswidgvlirngpgswnvgeesfdhlfdcsgllhrfkissGLVTyqckfiksesyiKNHAARRIVVTgfgtrfvpdpcaSIFQRIATlfkpgsdntlvsvypiqdqvyalgdsnymhridpatldtlgkidlagdvtilhqtshplttsdgetfnlgvtlrptgprycilqlndafsypdlshppppppslrfrddidmtSTIFHVLdktngsvvhrfqadsFFYLHIINAyedtndgiVVDICCYRNPAMLDCMYREALKnihstpryaQMFRARplrfrldlasprtaptgkvrpsvicdvgcetprmngqhqgrsYTYFYAIsadidrdnpgtlIKVNVqnntckswsqkdvypsepvfvatpnarkedEGVLLSVLLWSHHPTRVSLLVLNARTMqelgrvnfttptpvpkclhgwyfpherkda
qdnsevdqpvqgtvegvipswidGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQtshplttsdgetfNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLasprtaptgkvrpsviCDVGCETprmngqhqgrSYTYFYAISADIDRDNPGTLIKVNVQNNTckswsqkdvypsepVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGrvnfttptpvpkclhgwyfpherkda
QDNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHppppppSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERKDA
************TVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSY******************IDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASP****TGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFP******
*DNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHST*RYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPH*RK**
**********QGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERKDA
*****VDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHE****
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QDNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDAFSYPDLSHPPPPPPSLRFRDDIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHERKDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query447 2.2.26 [Sep-21-2011]
Q9I993526 Beta,beta-carotene 15,15' yes N/A 0.975 0.828 0.301 2e-59
Q9YGX2533 Retinoid isomerohydrolase no N/A 0.964 0.808 0.298 7e-55
A9C3R8532 Retinal Mueller cells iso no N/A 0.968 0.813 0.295 1e-54
Q9TVB8533 Retinoid isomerohydrolase yes N/A 0.959 0.804 0.301 5e-54
Q6PBW5531 Retinoid isomerohydrolase no N/A 0.964 0.811 0.300 2e-53
Q9JJS6566 Beta,beta-carotene 15,15' yes N/A 0.966 0.763 0.289 8e-53
Q16518533 Retinoid isomerohydrolase yes N/A 0.961 0.806 0.286 5e-52
Q9XT71533 Retinoid isomerohydrolase N/A N/A 0.961 0.806 0.286 6e-52
Q28175533 Retinoid isomerohydrolase yes N/A 0.957 0.803 0.289 1e-51
Q9HAY6547 Beta,beta-carotene 15,15' no N/A 0.932 0.762 0.295 4e-51
>sp|Q9I993|BCDO1_CHICK Beta,beta-carotene 15,15'-monooxygenase OS=Gallus gallus GN=BCMO1 PE=1 SV=1 Back     alignment and function desciption
 Score =  229 bits (585), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 249/518 (48%), Gaps = 82/518 (15%)

Query: 1   QDNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGL 60
           ++  E  +P++  V+G +P+W+ GVL+RNGPG   +G+  ++H FD   LLH F   +G 
Sbjct: 7   RNKEEHPEPIKAEVQGQLPTWLQGVLLRNGPGMHTIGDTKYNHWFDGLALLHSFTFKNGE 66

Query: 61  VTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQR----IATLFKPGSDNTLV 116
           V Y+ K+++S++Y  N  A RIVV+ FGT   PDPC +IF +    ++      +DN L+
Sbjct: 67  VYYRSKYLRSDTYNCNIEANRIVVSEFGTMAYPDPCKNIFAKAFSYLSHTIPEFTDNCLI 126

Query: 117 SVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGV 176
           ++    D  YA  ++N++ +IDP TL+TL K+D +  V +   TSHP   S G   N+G 
Sbjct: 127 NIMKTGDDYYATSETNFIRKIDPQTLETLDKVDYSKYVAVNLATSHPHYDSAGNILNMGT 186

Query: 177 TLRPTG-PRYCILQL----------NDAFSYPDLSHPPPPPPSLR--------------- 210
           ++   G  +Y + ++             F + ++    P    L+               
Sbjct: 187 SIVDKGRTKYVLFKIPSSVPEKEKKKSCFKHLEVVCSIPSRSLLQPSYYHSFGITENYIV 246

Query: 211 -----FRDDIDMTSTI--------------------FHVLD-KTNGSVVHRFQADSFFYL 244
                F+ DI   +T                     FH +D KT   V  +F  D+    
Sbjct: 247 FIEQPFKLDIVKLATAYIRGVNWASCLSFHKEDKTWFHFVDRKTKKEVSTKFYTDALVLY 306

Query: 245 HIINAYEDTNDG-IVVDICCYRNPAMLDCMYREAL-KNIHSTPRYAQMFRAR----PLRF 298
           H INAYE+  DG +V DI  YR+ ++ D  Y + L K+     +   +   +    PL++
Sbjct: 307 HHINAYEE--DGHVVFDIVAYRDNSLYDMFYLKKLDKDFEVNNKLTSIPTCKRFVVPLQY 364

Query: 299 RLD---------LASPRTAPTGK-----VRPSVICDVGCETPRMNGQHQGRSYTYFYAIS 344
             D         L +  TA   K      +P ++C+ G E PR+N  + G+ Y Y YA  
Sbjct: 365 DKDAEVGSNLVKLPTSATAVKEKDGSIYCQPEILCE-GIELPRVNYDYNGKKYKYVYATE 423

Query: 345 ADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHP 404
                  P  + K+NVQ      W +   +PSEP+FV +P+AR+EDEGV+L+ ++ S   
Sbjct: 424 VQWS-PVPTKIAKLNVQTKEVLHWGEDHCWPSEPIFVPSPDAREEDEGVVLTCVVVSEPN 482

Query: 405 TRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPH 442
               LL+L+A+T +ELGR        +   LHG + P 
Sbjct: 483 KAPFLLILDAKTFKELGRATVNVEMHLD--LHGMFIPQ 518
Symmetrically cleaves beta-carotene into two molecules of retinal. The reaction proceeds in three stages, epoxidation of the 15,15'-double bond, hydration of the double bond leading to ring opening, and oxidative cleavage of the diol formed.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 6
>sp|Q9YGX2|RPE65_CHICK Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 Back     alignment and function description
>sp|A9C3R8|RP65C_DANRE Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1 Back     alignment and function description
>sp|Q9TVB8|RPE65_CANFA Retinoid isomerohydrolase OS=Canis familiaris GN=RPE65 PE=1 SV=3 Back     alignment and function description
>sp|Q6PBW5|RP65A_DANRE Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1 Back     alignment and function description
>sp|Q9JJS6|BCDO1_MOUSE Beta,beta-carotene 15,15'-monooxygenase OS=Mus musculus GN=Bcmo1 PE=1 SV=2 Back     alignment and function description
>sp|Q16518|RPE65_HUMAN Retinoid isomerohydrolase OS=Homo sapiens GN=RPE65 PE=1 SV=3 Back     alignment and function description
>sp|Q9XT71|RPE65_CHLAE Retinoid isomerohydrolase OS=Chlorocebus aethiops GN=RPE65 PE=2 SV=3 Back     alignment and function description
>sp|Q28175|RPE65_BOVIN Retinoid isomerohydrolase OS=Bos taurus GN=RPE65 PE=1 SV=3 Back     alignment and function description
>sp|Q9HAY6|BCDO1_HUMAN Beta,beta-carotene 15,15'-monooxygenase OS=Homo sapiens GN=BCMO1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
193716052 605 PREDICTED: beta,beta-carotene 15,15'-mon 0.970 0.717 0.438 1e-114
157135394 712 beta-carotene dioxygenase [Aedes aegypti 0.961 0.603 0.418 1e-112
170029741 725 beta,beta-carotene 15,15'-monooxygenase 0.970 0.598 0.406 1e-110
270001197531 hypothetical protein TcasGA2_TC016092 [T 0.941 0.792 0.425 1e-109
91093114 578 PREDICTED: similar to beta-carotene diox 0.941 0.728 0.427 1e-109
158297012 720 AGAP008143-PA [Anopheles gambiae str. PE 0.968 0.601 0.400 1e-108
160357915513 neither inactivation nor afterpotential 0.970 0.846 0.418 1e-107
384402276511 predicted carotinoid oxygenase [Bombyx m 0.973 0.851 0.411 1e-107
321476345527 hypothetical protein DAPPUDRAFT_97232 [D 0.968 0.821 0.382 1e-100
357615480504 neither inactivation nor afterpotential 0.973 0.863 0.369 2e-92
>gi|193716052|ref|XP_001952338.1| PREDICTED: beta,beta-carotene 15,15'-monooxygenase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/499 (43%), Positives = 304/499 (60%), Gaps = 65/499 (13%)

Query: 5   EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 64
           ++  PVQG ++G IP W+ G L+RNGPGS +VG   F H+FD S LLHRF   +G V+YQ
Sbjct: 104 DIPTPVQGVIKGKIPEWLSGSLLRNGPGSTHVGSYEFKHIFDSSALLHRFAFKNGTVSYQ 163

Query: 65  CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPG---SDNTLVSVYPI 121
           C+F++S +Y KN AA+RIV+T FGTR  PDPC +IF R + +FK G   SDN ++S+YPI
Sbjct: 164 CRFLESNTYKKNKAAQRIVITEFGTRACPDPCNTIFHRFSNVFKWGDNQSDNAMISIYPI 223

Query: 122 QDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLR-- 179
            D+ +A  +   M +IDP TL+TL  ID+     I+H T+HP   +DG  FNL    +  
Sbjct: 224 GDEYFAFTEYPIMIKIDPTTLETLTTIDIGCLTGIVHHTAHPHVAADGAVFNLATVPKID 283

Query: 180 --------------PTGPRY---------CI---------LQLNDAFSYPDLSH-----P 202
                          TG RY         CI         L      S+    H      
Sbjct: 284 GPHYCVVKFPRVDSETGYRYSTDEMFGRMCIVATIKCRWPLHPGYMHSFGMTEHYFVVVE 343

Query: 203 PPPPPSL------RFRDD--------IDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIIN 248
            P   SL      RF+ D             T+ H++ +T+G  V  F++D+FFYLHIIN
Sbjct: 344 QPLSISLSTAVVNRFKGDPLSSALKWFQDCPTLIHLISRTDGKTVKTFKSDAFFYLHIIN 403

Query: 249 AYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFRARPLRFRL--DLASPR 306
            YE+ +D IV+DICCYR+P+M+DCM+ EAL+N++  P YA MFR+RPLRF L  +  +P 
Sbjct: 404 QYEE-DDHIVIDICCYRDPSMIDCMFVEALQNLNKNPDYAAMFRSRPLRFMLPINCDNPT 462

Query: 307 TAPTGK----VRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGTLIKVNVQN 362
           +         V P  +CD+GCETPR+N  + G+ Y +FYAIS+D+D +NPGTLIKV+  N
Sbjct: 463 SGDVENDHLYVSPEKLCDLGCETPRINEFNIGKKYRFFYAISSDVDAENPGTLIKVDTYN 522

Query: 363 NTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLW--SHHPTRVSLLVLNARTMQEL 420
            TCK+W +++VYPSEP+FV+ P+A  ED+GV+LS ++W  S    +  ++VL+A++  E+
Sbjct: 523 KTCKTWCEQNVYPSEPIFVSLPDAEDEDDGVVLSSIIWGGSECENQAGVIVLDAKSWTEI 582

Query: 421 GRVNFTTPTPVPKCLHGWY 439
           GR  F T +PVPKCLHGWY
Sbjct: 583 GRAVFVTQSPVPKCLHGWY 601

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157135394|ref|XP_001656637.1| beta-carotene dioxygenase [Aedes aegypti] gi|108881266|gb|EAT45491.1| AAEL003211-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170029741|ref|XP_001842750.1| beta,beta-carotene 15,15'-monooxygenase [Culex quinquefasciatus] gi|167864069|gb|EDS27452.1| beta,beta-carotene 15,15'-monooxygenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|270001197|gb|EEZ97644.1| hypothetical protein TcasGA2_TC016092 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91093114|ref|XP_967460.1| PREDICTED: similar to beta-carotene dioxygenase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158297012|ref|XP_317319.4| AGAP008143-PA [Anopheles gambiae str. PEST] gi|157014990|gb|EAA12399.4| AGAP008143-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|160357915|emb|CAO85888.1| neither inactivation nor afterpotential B [Galleria mellonella] Back     alignment and taxonomy information
>gi|384402276|gb|AFH88673.1| predicted carotinoid oxygenase [Bombyx mori] Back     alignment and taxonomy information
>gi|321476345|gb|EFX87306.1| hypothetical protein DAPPUDRAFT_97232 [Daphnia pulex] Back     alignment and taxonomy information
>gi|357615480|gb|EHJ69683.1| neither inactivation nor afterpotential B [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query447
FB|FBgn0002937 620 ninaB "neither inactivation no 0.411 0.296 0.510 5.1e-114
UNIPROTKB|E1C8E0548 BCO2 "Uncharacterized protein" 0.425 0.346 0.406 8.3e-68
ZFIN|ZDB-GENE-060421-7448555 bco2b "beta-carotene oxygenase 0.416 0.335 0.414 7.9e-64
ZFIN|ZDB-GENE-081104-505532 rpe65c "retinal pigment epithe 0.382 0.321 0.416 2.6e-63
ZFIN|ZDB-GENE-010509-1549 bco2l "beta-carotene 15, 15-di 0.416 0.338 0.393 3.6e-63
MGI|MGI:2177469532 Bco2 "beta-carotene oxygenase 0.496 0.417 0.325 1.7e-62
ZFIN|ZDB-GENE-050410-16532 rpe65b "retinal pigment epithe 0.382 0.321 0.393 4.8e-62
UNIPROTKB|F1PXT9533 RPE65 "Retinoid isomerohydrola 0.382 0.320 0.416 7.7e-62
UNIPROTKB|Q9TVB8533 RPE65 "Retinoid isomerohydrola 0.382 0.320 0.416 9.8e-62
MGI|MGI:98001533 Rpe65 "retinal pigment epithel 0.382 0.320 0.416 1.3e-61
FB|FBgn0002937 ninaB "neither inactivation nor afterpotential B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 509 (184.2 bits), Expect = 5.1e-114, Sum P(3) = 5.1e-114
 Identities = 95/186 (51%), Positives = 126/186 (67%)

Query:     5 EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 64
             E+  P++G   G IP WI G L+RNGPGSW VG+ +F HLFDCS LLHRF I +G VTYQ
Sbjct:    52 EIVDPIEGHHSGHIPKWICGSLLRNGPGSWKVGDMTFGHLFDCSALLHRFAIRNGRVTYQ 111

Query:    65 CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPIQ 122
              +F+ +E+  KN +A+RIVVT FGT  VPDPC SIF R A +F+P  G+DN+++S+YP  
Sbjct:   112 NRFVDTETLRKNRSAQRIVVTEFGTAAVPDPCHSIFDRFAAIFRPDSGTDNSMISIYPFG 171

Query:   123 DQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTLRPTG 182
             DQ Y   ++ +MHRI+P TL T  +I     V +++ TSHP     G  +NLG T+  +G
Sbjct:   172 DQYYTFTETPFMHRINPCTLATEARICTTDFVGVVNHTSHPHVLPSGTVYNLGTTMTRSG 231

Query:   183 PRYCIL 188
             P Y IL
Sbjct:   232 PAYTIL 237
GO:0007604 "phototransduction, UV" evidence=IMP
GO:0016063 "rhodopsin biosynthetic process" evidence=IDA;IMP
GO:0007603 "phototransduction, visible light" evidence=IMP
GO:0007602 "phototransduction" evidence=TAS
GO:0003834 "beta-carotene 15,15'-monooxygenase activity" evidence=IMP;IDA;NAS
GO:0016119 "carotene metabolic process" evidence=IDA
GO:0035238 "vitamin A biosynthetic process" evidence=IMP;IDA
GO:0009110 "vitamin biosynthetic process" evidence=IMP
GO:0010436 "carotenoid dioxygenase activity" evidence=IDA
GO:0042574 "retinal metabolic process" evidence=IDA
GO:0004744 "retinal isomerase activity" evidence=IDA
UNIPROTKB|E1C8E0 BCO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060421-7448 bco2b "beta-carotene oxygenase 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081104-505 rpe65c "retinal pigment epithelium-specific protein 65c" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010509-1 bco2l "beta-carotene 15, 15-dioxygenase 2, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2177469 Bco2 "beta-carotene oxygenase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050410-16 rpe65b "retinal pigment epithelium-specific protein 65b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PXT9 RPE65 "Retinoid isomerohydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TVB8 RPE65 "Retinoid isomerohydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:98001 Rpe65 "retinal pigment epithelium 65" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9TVB8RPE65_CANFA3, ., 1, ., 1, ., 6, 40.30110.95970.8048yesN/A
O70276RPE65_RAT3, ., 1, ., 1, ., 6, 40.28620.96190.8067yesN/A
Q28175RPE65_BOVIN3, ., 1, ., 1, ., 6, 40.28900.95740.8030yesN/A
Q16518RPE65_HUMAN3, ., 1, ., 1, ., 6, 40.28620.96190.8067yesN/A
Q9I993BCDO1_CHICK1, ., 1, 4, ., 9, 9, ., 3, 60.30110.97530.8288yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.990.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-103
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 2e-48
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 9e-08
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 2e-05
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 1e-04
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information 
 Score =  315 bits (810), Expect = e-103
 Identities = 150/481 (31%), Positives = 215/481 (44%), Gaps = 64/481 (13%)

Query: 5   EVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 64
           E+       VEG IP+ ++G L RNGPG    G   + H FD  G+LH F+   G VTY+
Sbjct: 8   ELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRFEDGRVTYR 67

Query: 65  CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQ 124
            +F+++E Y    AA R +  G      PDPC +IF R   +     +    +V     +
Sbjct: 68  NRFVRTEGYKAERAAGRRLYPGEFGTLKPDPCKNIFPR---VPGKLKNVANTNVVYHGGR 124

Query: 125 VYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQ-TSHPLT-TSDGETFNLGVTLRPTG 182
           + AL ++   +R+DP TL+TLG+ D  G +      T+HP      GE  N G++L P  
Sbjct: 125 LLALWEAGLPYRLDPETLETLGRYDFGGKLKPGPPFTAHPKVDPVTGELVNFGLSLGPKP 184

Query: 183 PRYCILQLN---------DAFSYPD--------------------LSHPPPP------PP 207
           P     +++           FS P                     L   P          
Sbjct: 185 PYLTYYEVDADGKLVREVPIFSLPGPSMIHDFAITENYVIFPDLPLVFDPLRLLLGGRAD 244

Query: 208 SLRFRDDIDMTSTIFHVLDKTNG-SVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRN 266
            LR+  +     T F V+ +  G S V  F+A   F  H  NA+E+    IV+D C Y +
Sbjct: 245 PLRWDPEKP---TRFGVIPRRGGKSDVRWFEAPPCFVFHTANAWEE-GGEIVLDACRYDD 300

Query: 267 PAMLDCMYREALKNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETP 326
           P  LD  Y   L N+       +  R+R  R+RLDL +        V   V+ D  CE P
Sbjct: 301 PDFLDPFY---LDNLRPDAFADKKPRSRLTRWRLDLKTGG-----DVTEEVLLDRPCEFP 352

Query: 327 RMNGQHQGRSYTYFYAISADIDRDNPG---TLIKVNVQNNTCKSWSQKD-VYPSEPVFVA 382
           R+N ++ GR Y Y Y  +AD      G    L+KV+++    + WS     YP EP+FV 
Sbjct: 353 RINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLETGEVQVWSFGPGCYPGEPIFVP 412

Query: 383 TPNARKEDEGVLLSVLLWSHHPTRVS-LLVLNARTMQE--LGRVNFTTPTPVPKCLHGWY 439
            P A  ED+G LLSV+      T  S LL+L+A+ + E  + RV    P  VP   HG +
Sbjct: 413 RPGAADEDDGWLLSVVYDED--TGRSELLILDAKDLTEGPVARVEL--PHRVPYGFHGTW 468

Query: 440 F 440
            
Sbjct: 469 V 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 447
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285|consensus582 100.0
KOG1285|consensus582 99.71
COG3823262 Glutamine cyclotransferase [Posttranslational modi 91.72
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-109  Score=820.88  Aligned_cols=410  Identities=28%  Similarity=0.413  Sum_probs=349.4

Q ss_pred             eeE-EeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecC-cEEEEEEEecchHHHHHHhcCCceeeecc
Q psy14636         11 QGT-VEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG-LVTYQCKFIKSESYIKNHAARRIVVTGFG   88 (447)
Q Consensus        11 ~~~-v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G-~v~y~~R~v~T~~~~~e~~~g~~~~~~fg   88 (447)
                      .+. |+|+||++|+|||||||||++.+++...+||||||||||+|.|.|| +|+|+||||||++|++|++||+++|++++
T Consensus        37 ~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g~~ae~~Ag~~l~~g~~  116 (490)
T COG3670          37 DLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQGYLAENEAGKPLWGGLG  116 (490)
T ss_pred             ccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeeceeehhhhcCcceecccc
Confidence            565 8999999999999999999999999999999999999999999995 99999999999999999999999999988


Q ss_pred             CCCCCC-CcchHHHHHHhhcCCCCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCcCccceecC
Q psy14636         89 TRFVPD-PCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTS  167 (447)
Q Consensus        89 ~~~~~~-p~~~~~~~~~~~~~~~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~tAHpk~Dp  167 (447)
                      +...+. +..++       -...+|.|||||+.|+++|+||||+|.||+|||.||+|+|+.+|+|...+.+||||||+||
T Consensus       117 ~~~p~~~~~~~~-------~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~tL~TlG~~~~~g~~~g~~fsAHPkvDp  189 (490)
T COG3670         117 ETQPPGVRPHSR-------TGDLKNAANTSVIMHGDELLALWEGGSPYRLDPDTLETLGKEDFGGDPLGGPFSAHPKVDP  189 (490)
T ss_pred             ccCCCCcCcCcc-------ccccccCCccceEeehhHHHHHHhcCCccccChhHhhhcChhhcCCCCCCCccccCccCCC
Confidence            743221 11111       0115788999999999999999999999999999999999999999644678999999999


Q ss_pred             -CCCEEEEecccCCCCCcEEEEE--------------ecC--CcCCCCcCCCC-----CCCCeecc-----cc-------
Q psy14636        168 -DGETFNLGVTLRPTGPRYCILQ--------------LND--AFSYPDLSHPP-----PPPPSLRF-----RD-------  213 (447)
Q Consensus       168 -tge~~~~~~~~~~~~~~~~~~~--------------~p~--~~hd~~~~~~~-----~~p~~~~~-----~~-------  213 (447)
                       |||++||+++....  .++++.              +|.  |+|||+ +|++     +.|+.+|.     ..       
T Consensus       190 ~tgel~~fg~s~~~~--~l~~~~v~~~G~l~r~~~i~lpg~~~~HDFa-~T~~y~If~~~Pv~~d~~p~ll~~~~~~~~~  266 (490)
T COG3670         190 DTGELFNFGYSFALP--YLTYYVVDADGELRRTVDIPLPGPPMMHDFA-ITENYLIFFDLPVTFDPVPRLLGRPADGHAM  266 (490)
T ss_pred             CCceEEEEEeccCCC--eeEEEEECCCCcEEEeeeeecCCCccceeee-ecCceEEEEeCcccccchhHHhcCcccccce
Confidence             99999999986542  344443              344  999999 8887     89999983     22       


Q ss_pred             -CCCCCceEEEEEECCCCCeEEEEEcCceeEEEeeeeeecCCCcEEEEEeeecCCchhhhhhHHHhhccCCCCcccccCC
Q psy14636        214 -DIDMTSTIFHVLDKTNGSVVHRFQADSFFYLHIINAYEDTNDGIVVDICCYRNPAMLDCMYREALKNIHSTPRYAQMFR  292 (447)
Q Consensus       214 -~~~~~~t~~~vipR~~~~~v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (447)
                       +-|+.||||+||||+++++|||||++|||+||+.||||++|+.|.+|+|++++.+...    +..+.... .......+
T Consensus       267 ~~~pe~ptri~V~pR~g~~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~----~~~~~~~~-g~~~~~a~  341 (490)
T COG3670         267 RWRPELPTRILVLPREGDSEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTL----DTLGEGPG-GDFRTLAP  341 (490)
T ss_pred             eecCCCCcEEEEEccCCCCceeEEecCCeEEEEecceeecCCCcEEEEEEeeccccccc----cccccccc-ccccccCC
Confidence             1299999999999995468999999999999999999998779999999999874321    11111111 12223347


Q ss_pred             CceEEEEEeCCCCCCCCCCcccceeecCCCcCCCccCCCCCCCccceEEEEecCCCCCCCCc---EEEEEeeCCceeEEc
Q psy14636        293 ARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRSYTYFYAISADIDRDNPGT---LIKVNVQNNTCKSWS  369 (447)
Q Consensus       293 ~~l~R~~idl~~g~~~~~~~~~~~~l~~~~~EfP~in~~~~gr~yry~Y~~~~~~~~~~~~~---i~k~D~~tg~~~~w~  369 (447)
                      ++|+||+|||++|+      +..+.+.+++||||+||+++.|++|||+|++...+....+++   |+|+|++||+.+.|+
T Consensus       342 ~~L~R~~lnl~tg~------v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l~k~D~~tg~~~~~~  415 (490)
T COG3670         342 PRLHRWTLNLKTGK------VAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTLAKHDLETGTSQVYS  415 (490)
T ss_pred             CcceEEEEccccch------hHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhcceeEEEeccCCcEEEEe
Confidence            99999999999996      668889999999999999999999999999876665555555   999999999999997


Q ss_pred             -CCCCCCCccEEeeCCCCCCCCCeEEEEEEEeCCCCCceEEEEEecCCcCc--eEEEEEeCCCCCCCCCceeeccCCC
Q psy14636        370 -QKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE--LGRVNFTTPTPVPKCLHGWYFPHER  444 (447)
Q Consensus       370 -~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~~~~~~s~l~IlDA~~l~~--var~~l~lP~~vP~gfHG~w~~~~~  444 (447)
                       ++++|++||+|||||++++|||||||++|+|... ++|+|+||||+++++  |||++|  |++||+||||+|++.++
T Consensus       416 ~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~-~~Sel~v~DA~~~~~epIa~l~L--p~~vP~gfHG~w~~~~~  490 (490)
T COG3670         416 FGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDR-HASELLVFDAQRVTAEPIARLAL--PQRVPYGFHGNWVPTEE  490 (490)
T ss_pred             cCCCCcccccccccCCCCCcCCCcEEEEEEEecCC-CcceEEEEecccCCCCcceEEec--ccccccccccccccccC
Confidence             8999999999999999999999999999999864 569999999999887  777777  99999999999998763

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285|consensus Back     alignment and domain information
>KOG1285|consensus Back     alignment and domain information
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3fsn_A533 Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut 9e-53
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 2e-25
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 2e-09
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533 Back     alignment and structure 
Iteration: 1

 Score =  204 bits (519), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 144/517 (27%), Positives = 241/517 (46%), Gaps = 87/517 (16%)
Query: 4   SEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTY 63
            E+  P+   V G IP W+ G L+R GPG + VG E F HLFD   LLH+F    G VTY
Sbjct: 20  EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTY 79
Query: 64  QCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFK--PGSDNTLVSVYPI 121
             +FI++++Y++    +RIV+T FGT   PDPC +IF R  + F+    +DN LV++YP+
Sbjct: 80  HRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPV 139
Query: 122 QDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSD----------GET 171
            +  YA  ++N++ +++P TL+T+ ++DL   V++   T+HP   +D          G+ 
Sbjct: 140 GEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKN 199
Query: 172 FNLGVTL-----------RPTGPRYCILQL--NDAFSYPDLSHXXXXXXSL--------- 209
           F++   +            P      ++Q   +D F  P   H      +          
Sbjct: 200 FSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFK-PSYVHSFGLTPNYIVFVETPVK 258
Query: 210 ---------------RFRDDIDMTSTI---FHVLDKTNGSVVH-RFQADSFFYLHIINAY 250
                           + D  +   T+    H+ DK     ++ +++   F   H IN Y
Sbjct: 259 INLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTY 318
Query: 251 EDTNDGIVVDICCYRNPAML-DCMY----REALKNIHSTPRYAQMFRARPLRFRLDLASP 305
           ED ++ ++VD+CC++    + + +Y    RE  + +    R A     R     L++   
Sbjct: 319 ED-HEFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKA 377
Query: 306 RTAPTGKVRP-----SVICD----------------VGCETPRMNGQ-HQGRSYTYFYAI 343
            T       P     +++C                    E P++N Q + G+ YTY Y +
Sbjct: 378 DTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGL 437
Query: 344 SADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHH 403
              ++   P  L K+NV+      W + D YPSEP+FV+ P+A +ED+GV+LSV++    
Sbjct: 438 G--LNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGA 495
Query: 404 PTRVS-LLVLNARTMQELGRVNFTTPTPVPKCLHGWY 439
             + + LL+LNA+ + E+ R       PV    HG +
Sbjct: 496 GQKPAYLLILNAKDLSEVARAEVEINIPV--TFHGLF 530
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query447
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-101
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 4e-97
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 9e-64
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
 Score =  310 bits (796), Expect = e-101
 Identities = 138/518 (26%), Positives = 234/518 (45%), Gaps = 85/518 (16%)

Query: 4   SEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTY 63
            E+  P+   V G IP W+ G L+R GPG + VG E F HLFD   LLH+F    G VTY
Sbjct: 20  EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTY 79

Query: 64  QCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPI 121
             +FI++++Y++    +RIV+T FGT   PDPC +IF R  + F+    +DN LV++YP+
Sbjct: 80  HRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPV 139

Query: 122 QDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQTSHPLTTSDGETFNLGVTL-RP 180
            +  YA  ++N++ +++P TL+T+ ++DL   V++   T+HP   +DG  +N+G    + 
Sbjct: 140 GEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKN 199

Query: 181 TGPRYCILQLNDAFSY---------PDLSHPPPPPPSLRFRDDIDMTS------------ 219
               Y I+++    +            +  P        +     +T             
Sbjct: 200 FSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKI 259

Query: 220 ---------------------------TIFHVLDKTNGS-VVHRFQADSFFYLHIINAYE 251
                                         H+ DK     + ++++   F   H IN YE
Sbjct: 260 NLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYE 319

Query: 252 DTNDGIVVDICCYRNPAML-DCMYREALKNIHSTPR--YAQMFRARPLRFRLDLASPRTA 308
           D ++ ++VD+CC++    + + +Y   L+      +    +  +    R+ L L   +  
Sbjct: 320 D-HEFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKAD 378

Query: 309 P--------------------TGKVRPSVIC---DVGCETPRMNGQHQG-RSYTYFYAIS 344
                                T  + P V+        E P++N Q  G + YTY Y + 
Sbjct: 379 TGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLG 438

Query: 345 ADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWSHHP 404
              +   P  L K+NV+      W + D YPSEP+FV+ P+A +ED+GV+LSV++     
Sbjct: 439 L--NHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAG 496

Query: 405 TRVS-LLVLNARTMQELGRVNFTTPTPVPKCLHGWYFP 441
            + + LL+LNA+ + E+ R        +P   HG +  
Sbjct: 497 QKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLFKK 532
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query447
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure
Probab=100.00  E-value=7e-115  Score=918.55  Aligned_cols=435  Identities=31%  Similarity=0.618  Sum_probs=365.2

Q ss_pred             CCcccccceeeEEeecCCCCCceEEEEeCCCCCccCCcceecccCCCCceEEEEEecCcEEEEEEEecchHHHHHHhcCC
Q psy14636          2 DNSEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARR   81 (447)
Q Consensus         2 ~~~e~~~~~~~~v~G~iP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmv~~~~~~~G~v~y~~R~v~T~~~~~e~~~g~   81 (447)
                      .++|+++|++|.|+|+||+||+|||||||||++++++.+++||||||||||+|+|+||+|+|+||||||++|++|+++|+
T Consensus        18 ~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~G~v~y~~R~v~T~~~~~e~~agr   97 (533)
T 3kvc_A           18 TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKR   97 (533)
T ss_dssp             CCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEETTEEEEEEEECCCHHHHHHHHHTS
T ss_pred             cccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeCCEEEEEEEEecCHHHHHHHHcCC
Confidence            57899999999999999999999999999999998988899999999999999999999999999999999999999999


Q ss_pred             ceeeeccCCCCCCCcchHHHHHHhhcCC--CCCCceeeeeecCCEEEEEecCCceEEeCCCCCceeeeeecCCCCCCCCc
Q psy14636         82 IVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLGKIDLAGDVTILHQ  159 (447)
Q Consensus        82 ~~~~~fg~~~~~~p~~~~~~~~~~~~~~--~~~~aNt~v~~~gg~llAl~E~~~p~~lDp~TLeT~g~~d~~~~l~~~~~  159 (447)
                      ++|++||+...++||+++|+++++.+..  .++||||||++|+|+||||||+++|++|||+||||+|++||+|.|+...|
T Consensus        98 ~~~~~fg~~~~~~p~~~~~~~~~~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iDp~tLeT~G~~d~~g~l~~~~~  177 (533)
T 3kvc_A           98 IVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGA  177 (533)
T ss_dssp             CCSCBTTBCC-------------------CCCCCCCSEEEEETTEEEEECSSSEEEEECTTTCCEEEEEEHHHHSSCSCC
T ss_pred             cceeccCcccCCcchhhHHHHHHHhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeChHHcccccccccCCccCCCcc
Confidence            9999999998899999999998777653  67899999999999999999999999999999999999999999987889


Q ss_pred             CccceecCCCCEEEEecccCCC-CCcEEEEEec---------------------------CCcCCCCcCCCC-----CCC
Q psy14636        160 TSHPLTTSDGETFNLGVTLRPT-GPRYCILQLN---------------------------DAFSYPDLSHPP-----PPP  206 (447)
Q Consensus       160 tAHpk~Dptge~~~~~~~~~~~-~~~~~~~~~p---------------------------~~~hd~~~~~~~-----~~p  206 (447)
                      |||||+|||||+|||++++++. .+.|.+|+++                           .|+|||+ +|++     ++|
T Consensus       178 tAHPk~DptGel~~fg~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~iHDFa-iTeny~Vf~~~P  256 (533)
T 3kvc_A          178 TAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFG-LTPNYIVFVETP  256 (533)
T ss_dssp             CSCCEECTTSCEEEEEEECC---CCEEEEEEECCCCTTCCCGGGGCEEEEEEECSSTTCCBCCCCCE-ECSSEEEEEECS
T ss_pred             CCCCccCCCCCEEEEeeccCCCCCcEEEEEEECccccccccccccceeEEeeccccCCCCceeeeee-ecCCEEEEEeCC
Confidence            9999999999999999998764 4678887632                           2899999 9998     889


Q ss_pred             CeeccccC-----------------CCCCceEEEEEECCCCCe-EEEEEcCceeEEEeeeeeecCCCcEEEEEeeecC-C
Q psy14636        207 PSLRFRDD-----------------IDMTSTIFHVLDKTNGSV-VHRFQADSFFYLHIINAYEDTNDGIVVDICCYRN-P  267 (447)
Q Consensus       207 ~~~~~~~~-----------------~~~~~t~~~vipR~~~~~-v~~~~~~~~~~~H~~NAyE~~~g~Iv~D~~~~~~-~  267 (447)
                      +++|+.+|                 .|++++||+||||++++. ++||++++||+||++||||++| +||+|+|+|++ .
T Consensus       257 ~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~~~~~~~~~~~f~fH~~NA~Ee~~-~Iv~d~~~~~~~~  335 (533)
T 3kvc_A          257 VKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYINNKYRTSPFNLFHHINTYEDHE-FLIVDLCCWKGFE  335 (533)
T ss_dssp             EEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEEEEEEEEECCEEEEEEEEEEEETT-EEEEEEEEEESSS
T ss_pred             eEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCcccEEEEeCCeeEEeeeeeEEeCC-EEEEEEeeeCCch
Confidence            99886543                 188999999999999875 4899999999999999999877 99999999999 7


Q ss_pred             chhhhhhHHHhhccCC--CCcccccCCCceEEEEEeCCCCCCCC------------------CC--cccceeecC--C-C
Q psy14636        268 AMLDCMYREALKNIHS--TPRYAQMFRARPLRFRLDLASPRTAP------------------TG--KVRPSVICD--V-G  322 (447)
Q Consensus       268 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~R~~idl~~g~~~~------------------~~--~~~~~~l~~--~-~  322 (447)
                      ++++.++++++++...  .......+.++|+||+|||++++...                  .+  +++++.|++  . +
T Consensus       336 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a~~~~~~~~~~~~~~l~~~~~~~  415 (533)
T 3kvc_A          336 FVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQA  415 (533)
T ss_dssp             CGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEEEECTTSEEEEECEEEECBTTEE
T ss_pred             hhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCcccccccccccccccccceeeeccCCceeeeeeeeccCCccc
Confidence            7777777777754210  00112245688999999999851000                  00  156788885  6 8


Q ss_pred             cCCCccCC-CCCCCccceEEEEecCCCCCCCCcEEEEEeeCCceeEEcCCCCCCCccEEeeCCCCCCCCCeEEEEEEEeC
Q psy14636        323 CETPRMNG-QHQGRSYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNARKEDEGVLLSVLLWS  401 (447)
Q Consensus       323 ~EfP~in~-~~~gr~yry~Y~~~~~~~~~~~~~i~k~D~~tg~~~~w~~~~~~~~EPvFVPrp~~~~EdDG~Ll~~v~d~  401 (447)
                      +|||+||+ +|.||+|||+|+++..  ...+++|+|+|++||+.+.|+++++|+|||||||||++++|||||||++|+|.
T Consensus       416 ~EfP~In~~~~~Gr~~Ry~Y~~~~~--~~~~~~l~K~D~~tg~~~~w~~~~~~~~EPiFVPrp~~~~EDDG~lLs~V~d~  493 (533)
T 3kvc_A          416 FEFPQINYQKYGGKPYTYAYGLGLN--HFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSP  493 (533)
T ss_dssp             EEEEECCHHHHTTSCCCEEEEEEEE--TTEEEEEEEEETTTCCEEEECCTTCBCCCCEEEECTTCCSTTCEEEEEEEECC
T ss_pred             ccCceECHHHhCCCcccEEEEeccC--CCCCceeEEEEcCCCCEEEEeCCCccccCceeecCCCCCCCCCcEEEEEEEeC
Confidence            99999998 7999999999998765  35679999999999999999999999999999999999999999999999998


Q ss_pred             CC-CCceEEEEEecCCcCceEEEEEeCCCCCCCCCceeeccC
Q psy14636        402 HH-PTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPH  442 (447)
Q Consensus       402 ~~-~~~s~l~IlDA~~l~~var~~l~lP~~vP~gfHG~w~~~  442 (447)
                      .+ +++|+|+||||++|++||||+|  |++||+||||+|++.
T Consensus       494 ~~~~~~s~LlILDA~~l~~vArv~l--P~rvP~GfHG~w~~~  533 (533)
T 3kvc_A          494 GAGQKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLFKKS  533 (533)
T ss_dssp             STTSCSEEEEEEETTTCCEEEEEEE--SSCCCCCCEEEEEEC
T ss_pred             CcCCCccEEEEEeCCCChhhEEEEe--CCCCCCCccccccCC
Confidence            75 5668999999999999999999  999999999999863
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00