Psyllid ID: psy14677

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480---
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKDSDYDDDVQDD
cccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEEEccccccEEEEccEEEEEEccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEcccccccccccEEcccccEEEEccccEEEEcccEEEEEEEcccccccccccccccc
ccEEHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEccccccHHccccHHHHHHHHHHHHcccccHHEEEEcccccccccccccccccccHHHHcHccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEcccccccccccccEEEEEEcccccccEEEEEcEEEEEEcccccEEEcccccccccccEEEEEEEEEcccccccccccEEEEEEEEcccccccEEcccccccccEEEEEcccEEEEcccccEEEEEcccccccccccccccc
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRClvrnhhhtqqvipfnlpslfldgcNLCIELIDYILssltpnycaflfsgntrkhipsmnldiRKKSRRKRVIALIQNLTQaqipnmkrnlkrkspkkKHQVVQALRVNDSEAvenkikeepteeekprhhhhhhhrhrhhhkqertelsdrhnlqenqrprhekphssdkhrhssktepseretkrnrqshddeetnerrhhdrnnrthdnrhdernsrqqnnergsqdrrsnqshdrpqsssnshhrdrgpkkpfcdasdeyewgrkdannednknnaqqpkqkpdfglsgkltedtntyNGVVikyseppdarkpkrrwrlypfkgdtqlpvlHIHRQSAFlmgrdrkvadipvdhpscskqHAALQYRLtdytredgskgkrIRLYIIDLesangtfvnnkkidpkRYVELLEKDVIKFGFSSREYVLLHehskdsdydddvqdd
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFsgntrkhipsmnldirkkSRRKRVIALIqnltqaqipnmkrnlkrkspkkkhqvvqalrvndseavenkikeepteeekprhhhhhhhrhrhhhkqerteLSDRHNLQenqrprhekphssdkhrhssktepseretkrnrqshddeetnerrhhdrnnrthdnrhdernsrqqnnergsqdrrsnqshdrpqsssnshhrdrgpkkpFCDASDEYEWGRkdannednknnaqqpkqkpdfglsgkltedtntyngvvikyseppdarkpkrRWRLYpfkgdtqlpvlHIHRQSAFLMGRDRKVADIPvdhpscskqhaalqyrltdytredgskgkRIRLYIIdlesangtfvnnkkidpkRYVELLEKDVIKFGFSSREyvllhehskdsdydddvqdd
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMkrnlkrkspkkkHQVVQALRVNDSEAVenkikeepteeekPrhhhhhhhrhrhhhKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQShddeetnerrhhdrnnrthdnrhdernSRQQNNERGSQDRRSNQSHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRkdannednknnaqqPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKdsdydddvqdd
*******AAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIR****RKRVIALIQNLT****************************************************************************************************************************************************************************************************************************TYNGVVIKY**********RRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLH***************
*******AAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSM*********************************************************************************************************************************************************************************************************************************************************YSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTD********GKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV******************
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKR***************ALRVNDSEAVEN*******************************************************************************************************************************************PFCDASDEYEWGRKDANNE***********KPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEH*************
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHI***************************************************************************************************************************************************************************************************************************************DFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHE**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTVEADAAALSTVLHQTVLKCSFSALIRYYQYRCLVRNHHHTQQVIPFNLPSLFLDGCNLCIELIDYILSSLTPNYCAFLFSGNTRKHIPSMNLDIRKKSRRKRVIALIQNLTQAQIPNMKRNLKRKSPKKKHQVVQALRVNDSEAVENKIKEEPTEEEKPRHHHHHHHRHRHHHKQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHDRPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKDSDYDDDVQDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query483 2.2.26 [Sep-21-2011]
Q8BIZ6383 Smad nuclear-interacting yes N/A 0.517 0.652 0.528 4e-69
Q5M9G6389 Smad nuclear interacting yes N/A 0.347 0.431 0.696 1e-68
Q8TAD8396 Smad nuclear-interacting yes N/A 0.527 0.643 0.528 1e-68
Q8W4D8314 FHA domain-containing pro yes N/A 0.331 0.509 0.565 6e-50
Q54VU41505 Probable serine/threonine yes N/A 0.556 0.178 0.331 1e-35
Q9BWU0 796 Kanadaptin OS=Homo sapien no N/A 0.250 0.152 0.354 3e-11
Q07930204 Pre-mRNA leakage protein yes N/A 0.312 0.740 0.293 3e-11
Q8R3G1 351 Nuclear inhibitor of prot no N/A 0.225 0.310 0.327 4e-09
Q12972 351 Nuclear inhibitor of prot no N/A 0.225 0.310 0.327 4e-09
Q28147 351 Nuclear inhibitor of prot no N/A 0.225 0.310 0.327 5e-09
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1 Back     alignment and function desciption
 Score =  262 bits (670), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/265 (52%), Positives = 178/265 (67%), Gaps = 15/265 (5%)

Query: 213 EPSERETKRNRQSHDDEETNERRHHDRNNRTHDNRHDERNSRQQNNERGSQDRRSNQSHD 272
           EPSE+E +R R S    E +  R H R  R+ D    ER    Q+ +R SQ+ ++ +   
Sbjct: 118 EPSEQEHRRARNS----ERDRHRGHSRQGRSSD----ERPVSGQDRDRDSQNLQAQEEER 169

Query: 273 RPQSSSNSHHRDRGPKKPFCDASDEYEWGRKDANNEDNKNNAQQPKQKPDFGLSGKLTED 332
              ++    HR +         S+  E   + A N   +      K+KP F LSG L ED
Sbjct: 170 DFHNARRREHRQQNE----SAGSEAQEVIPRPAGNRSKEVPV---KEKPSFELSGALLED 222

Query: 333 TNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVD 392
           TNT+ GVVIKYSEPP+AR PK+RWRLYPFK D  LPV++IHRQSA+L+GR R++ADIP+D
Sbjct: 223 TNTFRGVVIKYSEPPEARIPKKRWRLYPFKNDEVLPVMYIHRQSAYLLGRHRRIADIPID 282

Query: 393 HPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEK 452
           HPSCSKQHA  QYRL +YTR DG+ G+R++ YIIDL S NGTF+NNK+I+P+RY EL EK
Sbjct: 283 HPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEK 342

Query: 453 DVIKFGFSSREYVLLHEHSKDSDYD 477
           DV+KFGFSSREYVLLHE S  S+ D
Sbjct: 343 DVLKFGFSSREYVLLHESSDTSELD 367
Down-regulates NF-kappa-B signaling by competing with RELA for CREBBP/EP300 binding. Involved in the microRNA (miRNA) biogenesis.
Mus musculus (taxid: 10090)
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1 Back     alignment and function description
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1 Back     alignment and function description
>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1 Back     alignment and function description
>sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1 Back     alignment and function description
>sp|Q07930|PML1_YEAST Pre-mRNA leakage protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PML1 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1 Back     alignment and function description
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2 Back     alignment and function description
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
194768571425 GF22145 [Drosophila ananassae] gi|190617 0.380 0.432 0.727 4e-77
195555694422 GD15469 [Drosophila simulans] gi|1942027 0.519 0.594 0.571 5e-77
195396337488 GJ16691 [Drosophila virilis] gi|19414655 0.378 0.375 0.724 5e-77
322792329303 hypothetical protein SINV_06301 [Solenop 0.492 0.785 0.599 7e-77
195476142422 GE15240 [Drosophila yakuba] gi|194185789 0.490 0.561 0.595 9e-77
62862214421 CG17168 [Drosophila melanogaster] gi|179 0.383 0.439 0.724 3e-76
332023715298 Smad nuclear-interacting protein 1 [Acro 0.515 0.835 0.571 6e-76
198467873433 GA27539 [Drosophila pseudoobscura pseudo 0.372 0.415 0.724 2e-75
194897969415 GG19762 [Drosophila erecta] gi|190650407 0.383 0.445 0.718 3e-75
195132524493 GI21565 [Drosophila mojavensis] gi|19390 0.378 0.371 0.708 5e-75
>gi|194768571|ref|XP_001966385.1| GF22145 [Drosophila ananassae] gi|190617149|gb|EDV32673.1| GF22145 [Drosophila ananassae] Back     alignment and taxonomy information
 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/187 (72%), Positives = 160/187 (85%), Gaps = 3/187 (1%)

Query: 296 DEYEWGRKDANNEDNKNNAQQP--KQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPK 353
           ++YEWG K  + + N+    +P  K+KP+FGLSG LTEDTN  NGVV+KYSEPP+ARKPK
Sbjct: 224 EQYEWG-KQGDEKSNRPADDEPVEKEKPNFGLSGALTEDTNKVNGVVVKYSEPPEARKPK 282

Query: 354 RRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTRE 413
           RRWRLYPFKG+T LP LHIHRQS FL+GRDRKV D+ VDHPSCSKQHAALQYRL  + R+
Sbjct: 283 RRWRLYPFKGETALPTLHIHRQSCFLVGRDRKVVDLAVDHPSCSKQHAALQYRLVPFERD 342

Query: 414 DGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKD 473
           DGS+GKR+RLY+IDLESANGTF+NNKKID ++Y EL+EKDVIKFGFSSREYVLLHE+SK+
Sbjct: 343 DGSQGKRVRLYLIDLESANGTFLNNKKIDGRKYYELMEKDVIKFGFSSREYVLLHENSKE 402

Query: 474 SDYDDDV 480
              DDDV
Sbjct: 403 DQEDDDV 409

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195555694|ref|XP_002077166.1| GD15469 [Drosophila simulans] gi|194202711|gb|EDX16287.1| GD15469 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195396337|ref|XP_002056788.1| GJ16691 [Drosophila virilis] gi|194146555|gb|EDW62274.1| GJ16691 [Drosophila virilis] Back     alignment and taxonomy information
>gi|322792329|gb|EFZ16313.1| hypothetical protein SINV_06301 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|195476142|ref|XP_002086007.1| GE15240 [Drosophila yakuba] gi|194185789|gb|EDW99400.1| GE15240 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|62862214|ref|NP_001015254.1| CG17168 [Drosophila melanogaster] gi|17944329|gb|AAL48057.1| RE68879p [Drosophila melanogaster] gi|30923720|gb|EAA46197.1| CG17168 [Drosophila melanogaster] gi|220958236|gb|ACL91661.1| CG17168-PA [synthetic construct] Back     alignment and taxonomy information
>gi|332023715|gb|EGI63939.1| Smad nuclear-interacting protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|198467873|ref|XP_002133877.1| GA27539 [Drosophila pseudoobscura pseudoobscura] gi|198146146|gb|EDY72504.1| GA27539 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|194897969|ref|XP_001978758.1| GG19762 [Drosophila erecta] gi|190650407|gb|EDV47685.1| GG19762 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195132524|ref|XP_002010693.1| GI21565 [Drosophila mojavensis] gi|193907481|gb|EDW06348.1| GI21565 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query483
FB|FBgn0039943421 CG17168 [Drosophila melanogast 0.600 0.688 0.501 2.3e-71
UNIPROTKB|F1P3G6373 SNIP1 "Uncharacterized protein 0.318 0.412 0.714 8.7e-65
MGI|MGI:2156003383 Snip1 "Smad nuclear interactin 0.318 0.402 0.727 1.1e-64
UNIPROTKB|I3LQU1261 SNIP1 "Uncharacterized protein 0.449 0.831 0.557 3.7e-64
UNIPROTKB|E2R797397 SNIP1 "Uncharacterized protein 0.587 0.715 0.464 6.2e-62
UNIPROTKB|E1BNB3399 SNIP1 "Uncharacterized protein 0.573 0.694 0.460 1.6e-61
UNIPROTKB|Q8TAD8396 SNIP1 "Smad nuclear-interactin 0.571 0.696 0.461 2.7e-61
RGD|1359268389 Snip1 "Smad nuclear interactin 0.598 0.742 0.439 3.4e-61
WB|WBGene00016323299 C32E8.5 [Caenorhabditis elegan 0.563 0.909 0.445 2.2e-59
TAIR|locus:2085740314 DDL "AT3G20550" [Arabidopsis t 0.596 0.917 0.386 1.5e-49
FB|FBgn0039943 CG17168 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 152/303 (50%), Positives = 189/303 (62%)

Query:   177 KQERTELSDRHNLQENQRPRHEKPHSSDKHRHSSKTEPSERETKRNRQSXXXXXXXXXXX 236
             K +  E S+ H     QR R+ +  S    R  S+ E  +R+ +RN++            
Sbjct:   101 KWDSPERSNSHRNSTRQR-RNTRSRS----RERSERE-RDRDCERNKERDYNMQSSKERW 154

Query:   237 XXXXXXXXXXXXXXXXSRQQNNERGSQDRR----SNQSHDRPQSSSN-SHHRDRGPKKPF 291
                             +R+++ +R   +RR    S    DR     +    R R  +   
Sbjct:   155 QRSPALRHRSRSSERKNRERDRQRRPTERRPVRRSQSPRDRCHGGRDLDQRRQRNQRHNN 214

Query:   292 CDAS--DEYEWGRXXXXXXXXXXXXXXPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDA 349
              + +  D Y WG+               K+KP+FGLSG LTEDTN  NGVV+KYSEPP+A
Sbjct:   215 SNKNEDDHYVWGKEVDEKVPAENDVPVDKEKPNFGLSGALTEDTNKLNGVVVKYSEPPEA 274

Query:   350 RKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTD 409
             RKPKRRWRLYPFKG+T LP LHIHRQS FL+GRDRKV D+ VDHPSCSKQHAALQYRL  
Sbjct:   275 RKPKRRWRLYPFKGETALPTLHIHRQSCFLVGRDRKVVDLAVDHPSCSKQHAALQYRLVP 334

Query:   410 YTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHE 469
             + REDGS GKR+RLY+IDL+SANGTF+NNKKID ++Y EL+EKDVIKFGFSSREYVLLHE
Sbjct:   335 FEREDGSHGKRVRLYLIDLDSANGTFLNNKKIDARKYYELIEKDVIKFGFSSREYVLLHE 394

Query:   470 HSK 472
             +SK
Sbjct:   395 NSK 397
GO:0004864 "protein phosphatase inhibitor activity" evidence=ISS
UNIPROTKB|F1P3G6 SNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2156003 Snip1 "Smad nuclear interacting protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQU1 SNIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R797 SNIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNB3 SNIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TAD8 SNIP1 "Smad nuclear-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359268 Snip1 "Smad nuclear interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00016323 C32E8.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2085740 DDL "AT3G20550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8TAD8SNIP1_HUMANNo assigned EC number0.52830.52790.6439yesN/A
Q8W4D8DDL_ARATHNo assigned EC number0.56520.33120.5095yesN/A
Q5M9G6SNIP1_RATNo assigned EC number0.69640.34780.4318yesN/A
Q8BIZ6SNIP1_MOUSENo assigned EC number0.52830.51750.6527yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 5e-23
pfam0049867 pfam00498, FHA, FHA domain 8e-14
smart0024052 smart00240, FHA, Forkhead associated domain 7e-10
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 1e-05
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 3e-05
PHA03420137 PHA03420, PHA03420, E4 protein; Provisional 4e-05
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 1e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 2e-04
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 2e-04
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 2e-04
PRK10019279 PRK10019, PRK10019, nickel/cobalt efflux protein R 7e-04
pfam09726 680 pfam09726, Macoilin, Transmembrane protein 0.002
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 92.8 bits (231), Expect = 5e-23
 Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 12/104 (11%)

Query: 355 RWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTRED 414
             RL    GD      ++     + +GRD    DI +D PS S++HA ++Y         
Sbjct: 1   VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYD-------- 52

Query: 415 GSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
                   + +IDL S NGTFVN +++ P   V L + DVI+ G
Sbjct: 53  ----GDGGVVLIDLGSTNGTFVNGQRVSPGEPVRLRDGDVIRLG 92

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236641 PRK10019, PRK10019, nickel/cobalt efflux protein RcnA; Provisional Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 483
KOG1882|consensus293 100.0
KOG1881|consensus 793 99.79
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.75
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.6
KOG1880|consensus 337 99.56
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.49
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.42
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.41
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.22
COG3456 430 Predicted component of the type VI protein secreti 98.86
KOG0615|consensus 475 98.29
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.55
KOG0245|consensus 1221 94.75
KOG2293|consensus547 94.74
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 94.58
KOG1892|consensus 1629 93.24
>KOG1882|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.5e-43  Score=338.54  Aligned_cols=161  Identities=68%  Similarity=1.150  Sum_probs=155.6

Q ss_pred             CCCCCCCCCCCCccccccccccCCceeeccCCCCCCCCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCC
Q psy14677        314 AQQPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDH  393 (483)
Q Consensus       314 ~~~~kekPnF~~SG~LaedsNt~nGVvLkysEPp~Ar~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdD  393 (483)
                      +++.+++|+|++||+|++++|++.||+|+|++|++|..|...|+||+|+++..+++++++.+++||+||+..++||.|+|
T Consensus       132 ~~~dke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~l~~l~iHrqs~yL~gRerkIaDi~idh  211 (293)
T KOG1882|consen  132 EPQDKEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEVLPVLYIHRQSCYLDGRERKIADIPIDH  211 (293)
T ss_pred             CchhccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhheecccccCCcccchheeeeeeeeecCceeeeeccCCCC
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             CCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeecCCCC
Q psy14677        394 PSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHEHSKD  473 (483)
Q Consensus       394 PSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e~S~d  473 (483)
                      |+||+|||+|||+.+.++..+|..+..+.+||+||||+||||||+.+|++.+|++|.++|+|+||.++++|||+++.++.
T Consensus       212 pScSKQHaviQyR~v~~~r~dGt~grrvkpYiiDLgS~NgTfLNnk~IepqRYyEL~ekDvlkfgfs~rEyvllhe~s~~  291 (293)
T KOG1882|consen  212 PSCSKQHAVIQYRLVEFTRADGTVGRRVKPYIIDLGSGNGTFLNNKVIEPQRYYELREKDVLKFGFSSREYVLLHEISMN  291 (293)
T ss_pred             ccccccceeeeeeecccccCCCccceeeeeEEEecCCCCcceecCcccCchheeeeecCceeeeccchHHHHHHHhhhcc
Confidence            99999999999999999889999899999999999999999999999999999999999999999999999999998765


Q ss_pred             C
Q psy14677        474 S  474 (483)
Q Consensus       474 d  474 (483)
                      .
T Consensus       292 ~  292 (293)
T KOG1882|consen  292 V  292 (293)
T ss_pred             c
Confidence            4

>KOG1881|consensus Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>KOG1880|consensus Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG0615|consensus Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0245|consensus Back     alignment and domain information
>KOG2293|consensus Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
3vpy_A145 Crystal Structure Of Arabidopsis Ddl Fha Domain Len 2e-40
4h87_A130 Crystal Structure Of A Fha Domain Of Kanadaptin (Sl 2e-11
2jkd_A187 Structure Of The Yeast Pml1 Splicing Factor And Its 7e-11
2jpe_A140 Fha Domain Of Nipp1 Length = 140 9e-11
3elv_A205 Crystal Structure Of Full-Length Yeast Pml1p Length 1e-10
3els_A158 Crystal Structure Of Yeast Pml1p, Residues 51-204 L 8e-06
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 98/133 (73%), Gaps = 1/133 (0%)
Query: 340 VIKYSEPPDARKPKRRWRLYPFK-GDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSK 398
            + ++EPP+ARKP  RWRLY FK G+     L +HRQS +L GR+R++ADIP DHPSCSK
Sbjct: 1   TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 399 QHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFG 458
           QHA +QYR  +  + DG  GK+++ YI DL S N T++N   I+P+RY EL EKD IKFG
Sbjct: 61  QHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFG 120
Query: 459 FSSREYVLLHEHS 471
            SSREYVLLHE+S
Sbjct: 121 NSSREYVLLHENS 133
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap) From Homo Sapiens At 1.55 A Resolution Length = 130 Back     alignment and structure
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its Integration Into The Res Complex Length = 187 Back     alignment and structure
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140 Back     alignment and structure
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p Length = 205 Back     alignment and structure
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204 Length = 158 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query483
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 5e-52
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 1e-46
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 4e-40
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 4e-16
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 6e-15
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 6e-14
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 1e-13
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 4e-13
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 6e-12
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 1e-11
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 2e-11
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 5e-11
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 6e-11
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 6e-11
3po8_A100 RV0020C protein, putative uncharacterized protein 1e-10
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 2e-10
2xt9_B115 Putative signal transduction protein GARA; lyase-s 2e-10
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-10
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 7e-10
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 1e-09
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-09
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 1e-08
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 4e-07
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 4e-06
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 2e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 5e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 6e-05
3pgw_S437 U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM 2e-04
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 1e-04
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
 Score =  172 bits (436), Expect = 5e-52
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 323 FGLSGKLTEDTNTYNGVVIKYSEPPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGR 382
            G    +    N+ + +   +  P  A KP     L   KGD  +  L I  +  +L GR
Sbjct: 3   LGSPNSMAAAVNSGSSLP-LFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGR 61

Query: 383 DRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKID 442
           +  + D  +DH SCS+ HAAL Y                R+++IDL S +GTF+ + +++
Sbjct: 62  NPDLCDFTIDHQSCSRVHAALVYH-----------KHLKRVFLIDLNSTHGTFLGHIRLE 110

Query: 443 PKRYVELLEKDVIKFGFSSREYVLLHE 469
           P +  ++     + FG S+R Y L  +
Sbjct: 111 PHKPQQIPIDSTVSFGASTRAYTLREK 137
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 100.0
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.97
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.95
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.94
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.88
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.86
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.84
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.83
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.83
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.83
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.82
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.82
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.81
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.81
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.8
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.8
3po8_A100 RV0020C protein, putative uncharacterized protein 99.79
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.78
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.78
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.78
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.78
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.75
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.74
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.73
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.7
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.66
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.66
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.66
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.55
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.36
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.36
4a0e_A123 YSCD, type III secretion protein; transport protei 99.31
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.19
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.01
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.91
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.84
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.83
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.73
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
Probab=100.00  E-value=5.6e-35  Score=276.78  Aligned_cols=143  Identities=32%  Similarity=0.531  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCccccccccccCCceeeccCCCCCCCCCCC-------------ceEEEEeeCCC----cccEEEeccccee
Q psy14677        316 QPKQKPDFGLSGKLTEDTNTYNGVVIKYSEPPDARKPKR-------------RWRLYPFKGDT----QLPVLHIHRQSAF  378 (483)
Q Consensus       316 ~~kekPnF~~SG~LaedsNt~nGVvLkysEPp~Ar~P~~-------------~WrL~VfKGge----~~eti~L~~qs~y  378 (483)
                      ..+++|||++||+|+.++|+++||+|+|+||+||++|..             .|.|+||+++.    .++++.|..++.|
T Consensus        26 ~~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y  105 (205)
T 3elv_A           26 YIDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCY  105 (205)
T ss_dssp             --------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEE
T ss_pred             cccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCce
Confidence            346899999999999999999999999999999999854             46799999876    6789999988999


Q ss_pred             eeccCC--------------CccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCCCCCceEecCEEcCCC
Q psy14677        379 LMGRDR--------------KVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPK  444 (483)
Q Consensus       379 lIGRd~--------------~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLGSTNGTFVNGeRI~p~  444 (483)
                      +|||++              ..|||+|++|+|||+||+|++...     +    ....|||+||+|+|||||||++|.+.
T Consensus       106 ~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~-----~----~~~~~~l~DLgStNGTfVNG~rI~~~  176 (205)
T 3elv_A          106 LVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV-----R----GILKCYVMDLDSSNGTCLNNVVIPGA  176 (205)
T ss_dssp             EEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEE-----T----TEEEEEEEECSCSSCCEETTEECCBT
T ss_pred             eecccccccccccccccccCccceEEeCCCCCCcccEEEEEecC-----C----CceeEEEEeCCCCCCCeECCEECCCC
Confidence            999995              359999999999999999998742     1    13469999999999999999999999


Q ss_pred             ceEEcCCCCEEEEcCcc----eEEEEe
Q psy14677        445 RYVELLEKDVIKFGFSS----REYVLL  467 (483)
Q Consensus       445 r~veLkdGDvIrFG~ST----ReYVLl  467 (483)
                      .+++|.+||+|+||.++    .+++++
T Consensus       177 ~~~~L~~GD~I~fG~s~r~~~~el~f~  203 (205)
T 3elv_A          177 RYIELRSGDVLTLSEFEEDNDYELIFM  203 (205)
T ss_dssp             SCEECCTTCEEESSSSGGGCSEEEEEE
T ss_pred             ceeECCCCCEEEECCCCCCCCeEEEEE
Confidence            99999999999999774    455554
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 483
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 2e-18
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 4e-15
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 6e-13
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 4e-10
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 3e-09
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 9e-08
d1lgpa_113 b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { 3e-06
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 3e-06
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 5e-06
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 1e-05
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 1e-04
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.9 bits (194), Expect = 2e-18
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 13/124 (10%)

Query: 346 PPDARKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQY 405
              +       RL   KG  +   L     S   +GR  +  +I +     S +H  ++ 
Sbjct: 3   SGSSGMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIES 62

Query: 406 RLTDYTREDGSKGKRIRLYIIDLESANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYV 465
              ++              I DL S+NGT +N+  +DP+  V L + DVIK G  +   V
Sbjct: 63  DSGNW-------------VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV 109

Query: 466 LLHE 469
               
Sbjct: 110 NFVS 113
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query483
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.88
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.83
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.79
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.79
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.76
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.73
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.72
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.71
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.7
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.63
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.56
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=8.9e-23  Score=174.45  Aligned_cols=107  Identities=28%  Similarity=0.343  Sum_probs=93.2

Q ss_pred             CCCCCceEEEEeeCCCcccEEEecccceeeeccCCCccceeeCCCCcCccceEEEEeecccccCCCCCCceeEEEEEeCC
Q psy14677        350 RKPKRRWRLYPFKGDTQLPVLHIHRQSAFLMGRDRKVADIPVDHPSCSKQHAALQYRLTDYTREDGSKGKRIRLYIIDLE  429 (483)
Q Consensus       350 r~P~~~WrL~VfKGge~~eti~L~~qs~ylIGRd~~~cDIvLdDPSISRqHAvIq~r~~~~~~edG~~~~~vr~yIiDLG  429 (483)
                      ...+..++|.+..|+..+..+.|.....++|||+...|||+|++++|||.||.|.+..       +      .|+|+||+
T Consensus         7 g~~~p~l~L~v~~Gp~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~~-------~------~~~i~Dl~   73 (118)
T d1uhta_           7 GMVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------G------NWVIQDLG   73 (118)
T ss_dssp             CCCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------S------SEEEECCC
T ss_pred             CCCCCcEEEEEEeCCCCCcEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEEC-------C------EEEEEECC
Confidence            3344568899999988888899987778999998546999999999999999998863       2      59999999


Q ss_pred             CCCceEecCEEcCCCceEEcCCCCEEEEcCcceEEEEeec
Q psy14677        430 SANGTFVNNKKIDPKRYVELLEKDVIKFGFSSREYVLLHE  469 (483)
Q Consensus       430 STNGTFVNGeRI~p~r~veLkdGDvIrFG~STReYVLl~e  469 (483)
                      |+|||||||++|.+..+++|.+||+|+||.+++.|+.+.+
T Consensus        74 S~nGT~vng~~l~~~~~~~L~~Gd~i~lG~~~~~~v~~~~  113 (118)
T d1uhta_          74 SSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS  113 (118)
T ss_dssp             CSSCCEESSSBCCTTCEEECCTTEEEEETTTEEEEEEEEC
T ss_pred             CcceeEECCEEcCCCcEEECCCCCEEEECCEEEEEEEecC
Confidence            9999999999999988999999999999999888876554
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure