Psyllid ID: psy14691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MPAKIPTESSSCKAMGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCARPT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHccccHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcccccEEEcccccccEEEEccccHHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEEccccccccccccEEccccccccccccccccccccccEEEEEEEccccccccccccEEEccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mpakiptesssckamgtsvfcdaqniqgvefslhhpadeeMTKIITAEGENINKLEKADILELTVRHLhritkphdpteEVQRFQAEGENINKLEKADILELTVRHLHritkphnpteeVQRFQAGFTQCASEACGFllslpgldtrVGKRLVEHLGKRISqsleanpalllsngesfspaggyerddyatlprdarvpsslgsatqdslrsgvadnassqssammlpqsnpgmslnlpnsslhpytcdeatlHVVGVRMGDYVGNRVLLAFTghtqtgpinymkneitNDRQLVQCMisdgscppngcppwrcqqdsavihgyccgcarpt
Flexible Loop (DISEMBL)
mpakiptesssckamGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRitkphdpteeVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARVPSslgsatqdslrsGVADNASSQSSAMMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTghtqtgpinYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCARPT
Low Complexity Region (SEG)
MPAKIPTESSSCKAMGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCARPT
Disordered region (IsUnstruct)
***************GTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRIT******************INKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRI**********************************************************************************LHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCA***
Disordered Region (DISOPRED)
******************VFCDAQNIQGVEF*********************************VRHLHRITKPHDPTEEVQ****************ILELTVRHLHRITK**N**EE*QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLV**************************************************************************************************************************************************************WRCQQDSAVIHGYCCGCARP*
Disordered Region (DISEMBL)
************KAMGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARV**************************MMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCARPT
Disordered Region (DISPRO)
***********C***GTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQ*************************************************************AMMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCAR**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAKIPTESSSCKAMGTSVFCDAQNIQGVEFSLHHPADEEMTKIITAEGENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSNPGMSLNLPNSSLHPYTCDEATLHVVGVRMGDYVGNRVLLAFTGHTQTGPINYMKNEITNDRQLVQCMISDGSCPPNGCPPWRCQQDSAVIHGYCCGCARPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q01071	173	Enhancer of split mdelta	yes	N/A	0.243	0.468	0.393	2e-10
P13097	186	Enhancer of split m7 prot	no	N/A	0.210	0.376	0.458	1e-09
Q01070	205	Enhancer of split mgamma	no	N/A	0.246	0.4	0.344	3e-09
Q26263	435	Protein deadpan OS=Drosop	no	N/A	0.195	0.149	0.410	4e-08
Q01069	195	Enhancer of split mbeta p	no	N/A	0.271	0.461	0.330	4e-08
Q04666	281	Transcription factor HES-	yes	N/A	0.210	0.249	0.371	7e-07
Q14469	280	Transcription factor HES-	yes	N/A	0.210	0.25	0.371	7e-07
Q3ZBG4	280	Transcription factor HES-	yes	N/A	0.210	0.25	0.371	7e-07
P35428	282	Transcription factor HES-	yes	N/A	0.210	0.248	0.371	9e-07
Q8AVU4	267	Transcription factor HES-	N/A	N/A	0.210	0.262	0.371	1e-06

>sp|Q01071|ESMD_DROME Enhancer of split mdelta protein OS=Drosophila melanogaster GN=HLHmdelta PE=1 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 8/89 (8%)

Query: 81  VQRFQAEGENINKLEKADILELTVRHL-----HRITKPHNPTEE---VQRFQAGFTQCAS 132
           V    A+GE ++KLEKADILELTV +L      R+  P +P  +   + +F+AG+TQ A 
Sbjct: 43  VDTMDAQGEQVSKLEKADILELTVNYLKAQQQQRVANPQSPPPDQVNLDKFRAGYTQAAY 102

Query: 133 EACGFLLSLPGLDTRVGKRLVEHLGKRIS 161
           E      ++PGLD + G  L++ LG ++ 
Sbjct: 103 EVSHIFSTVPGLDLKFGTHLMKQLGHQLK 131

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|P13097|ESM7_DROME Enhancer of split m7 protein OS=Drosophila melanogaster GN=HLHm7 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 93  KLEKADILELTVRHLHRI--TKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGK 150
           K EKADILE+TV+HL ++  +K H P    Q F+AG+ + A+E    L SLP +D   G 
Sbjct: 51  KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALASLPRVDVAFGT 110

Query: 151 RLVEHLGKRISQ 162
            L+ HLG R++Q
Sbjct: 111 TLMTHLGMRLNQ 122

Participates in the control of cell fate choice by uncommitted neuroectodermal cells in the embryo. Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3'.

Drosophila melanogaster (taxid: 7227)

>sp|Q01070|ESMC_DROME Enhancer of split mgamma protein OS=Drosophila melanogaster GN=HLHmgamma PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 8/90 (8%)

Query: 81  VQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEE--------VQRFQAGFTQCAS 132
           V   ++EGE++ +LEKADILELTV HL ++ +                + F++G+    +
Sbjct: 43  VATLESEGEHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHAVN 102

Query: 133 EACGFLLSLPGLDTRVGKRLVEHLGKRISQ 162
           E    L  LPG++  +G +L+ HLG+R++Q
Sbjct: 103 EVSRSLSQLPGMNVSLGTQLMTHLGQRLNQ 132

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster GN=dpn PE=1 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 8/73 (10%)

Query: 93  KLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGLD 145
           KLEKADILE+TV+HL  + +         +P+  VQ+F+ GF +CA E   ++  + G+D
Sbjct: 80  KLEKADILEMTVKHLQSVQRQQLNMAIQSDPSV-VQKFKTGFVECAEEVNRYVSQMDGID 138

Query: 146 TRVGKRLVEHLGK 158
           T V +RL  HL +
Sbjct: 139 TGVRQRLSAHLNQ 151

Transcriptional repressor of genes that require a bHLH protein for their transcription. Likely to be involved in the functional rather than the morphological differentiation of neurons. Loss of DPN function results in weak motor activity, lethargic behavior, and death. Implicated in sex determination as Groucho-DPN complex act directly to repress SXL transcription.

Drosophila melanogaster (taxid: 7227)

>sp|Q01069|ESMB_DROME Enhancer of split mbeta protein OS=Drosophila melanogaster GN=HLHmbeta PE=2 SV=2

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 16/106 (15%)

Query: 81  VQRFQAEGENINKLEKADILELTVRHLHR-----------ITKPHNPTEE-----VQRFQ 124
           V+    EGE+I +LEKADILELTV H+ +           +T   +P+ +      + F+
Sbjct: 41  VECLTQEGEHITRLEKADILELTVEHMKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFR 100

Query: 125 AGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPAL 170
           AG+   A+E    L ++PG+   +G +L+ HLG R++      P+L
Sbjct: 101 AGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVPSL 146

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q04666|HES1_RAT Transcription factor HES-1 OS=Rattus norvegicus GN=Hes1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 8/78 (10%)

Query: 92  NKLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGL 144
           +KLEKADILE+TV+HL  + +         +P+  + +++AGF++C +E   FL +  G+
Sbjct: 73  SKLEKADILEMTVKHLRNLQRAQMTAALSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGV 131

Query: 145 DTRVGKRLVEHLGKRISQ 162
           +T V  RL+ HL   ++Q
Sbjct: 132 NTEVRTRLLGHLANCMTQ 149

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Rattus norvegicus (taxid: 10116)

>sp|Q14469|HES1_HUMAN Transcription factor HES-1 OS=Homo sapiens GN=HES1 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 8/78 (10%)

Query: 92  NKLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGL 144
           +KLEKADILE+TV+HL  + +         +P+  + +++AGF++C +E   FL +  G+
Sbjct: 73  SKLEKADILEMTVKHLRNLQRAQMTAALSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGV 131

Query: 145 DTRVGKRLVEHLGKRISQ 162
           +T V  RL+ HL   ++Q
Sbjct: 132 NTEVRTRLLGHLANCMTQ 149

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Homo sapiens (taxid: 9606)

>sp|Q3ZBG4|HES1_BOVIN Transcription factor HES-1 OS=Bos taurus GN=HES1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 8/78 (10%)

Query: 92  NKLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGL 144
           +KLEKADILE+TV+HL  + +         +P+  + +++AGF++C +E   FL +  G+
Sbjct: 73  SKLEKADILEMTVKHLRNLQRAQMTAALSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGV 131

Query: 145 DTRVGKRLVEHLGKRISQ 162
           +T V  RL+ HL   ++Q
Sbjct: 132 NTEVRTRLLGHLANCMTQ 149

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity (By similarity). May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Bos taurus (taxid: 9913)

>sp|P35428|HES1_MOUSE Transcription factor HES-1 OS=Mus musculus GN=Hes1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 8/78 (10%)

Query: 92  NKLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGL 144
           +KLEKADILE+TV+HL  + +         +P+  + +++AGF++C +E   FL +  G+
Sbjct: 73  SKLEKADILEMTVKHLRNLQRAQMTAALSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGV 131

Query: 145 DTRVGKRLVEHLGKRISQ 162
           +T V  RL+ HL   ++Q
Sbjct: 132 NTEVRTRLLGHLANCMTQ 149

Transcriptional repressor of genes that require a bHLH protein for their transcription. May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1 (By similarity). Binds DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low affinity. May play a role in a functional FA core complex response to DNA cross-link damage, being required for the stability and nuclear localization of FA core complex proteins, as well as for FANCD2 monoubiquitination in response to DNA damage.

Mus musculus (taxid: 10090)

>sp|Q8AVU4|HES1B_XENLA Transcription factor HES-1-B OS=Xenopus laevis GN=hes1-b PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 8/78 (10%)

Query: 92  NKLEKADILELTVRHLHRITKPH-------NPTEEVQRFQAGFTQCASEACGFLLSLPGL 144
           +KLEKADILE+TV+HL  + +         +P+  + +++AGF++C +E   FL +  G+
Sbjct: 73  SKLEKADILEMTVKHLRNLQRVQMTAALSTDPSV-LGKYRAGFSECMNEVTRFLSTCEGV 131

Query: 145 DTRVGKRLVEHLGKRISQ 162
           +T V  RL+ HL   ++Q
Sbjct: 132 NTDVRTRLLGHLANCVNQ 149

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
328707902	269	PREDICTED: protein hairy-like [Acyrthosi	0.25	0.308	0.630	6e-24
283483973	201	enhancer of split mbeta [Bombyx mori] gi	0.280	0.462	0.505	2e-17
251752776	169	enhancer of split mbeta [Bombyx mori]	0.280	0.550	0.505	2e-17
357615019	384	enhancer of split mbeta-2 [Danaus plexip	0.25	0.216	0.493	3e-17
242015332	206	Enhancer of split mgamma protein, putati	0.331	0.533	0.435	3e-17
328697370	233	PREDICTED: enhancer of split mgamma prot	0.277	0.394	0.5	5e-17
312375673	257	hypothetical protein AND_13855 [Anophele	0.391	0.505	0.418	2e-16
389610101	199	E(spl) region transcript mbeta [Papilio	0.277	0.462	0.5	3e-16
251752778	163	enhancer of split mbeta-2 [Bombyx mori]	0.234	0.478	0.5	3e-16
91089129	192	PREDICTED: similar to AGAP012342-PA [Tri	0.334	0.578	0.408	3e-16

>gi|328707902|ref|XP_001949200.2| PREDICTED: protein hairy-like [Acyrthosiphon pisum]

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 69/84 (82%), Gaps = 1/84 (1%)

Query: 84  FQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPG 143
            +AEGEN++KLEKADILE TV+HL +IT+  +P EE  +FQ GF+ CASEAC FLLSLPG
Sbjct: 46  LEAEGENVDKLEKADILEFTVKHLQKITR-RDPVEEAYKFQEGFSHCASEACSFLLSLPG 104

Query: 144 LDTRVGKRLVEHLGKRISQSLEAN 167
           LD+ VG+RLVE+L K +S++LE+ 
Sbjct: 105 LDSVVGRRLVEYLAKSVSRALESQ 128

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283483973|ref|NP_001164466.1| enhancer of split mbeta [Bombyx mori] gi|281428763|gb|ADA69993.1| E(spl)-like protein [Bombyx mori]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 6/99 (6%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q+EGEN+ KLEKADILELTVRHLH++ +      NPT +V RF
Sbjct: 38  RINRCLDELKELMVSALQSEGENVAKLEKADILELTVRHLHKLRRQRRLSLNPTVDVDRF 97

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQ 162
           +AGFT  A+E    L S+PG+D R+G +L+ HLG R+++
Sbjct: 98  RAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNE 136

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|251752776|dbj|BAH83643.1| enhancer of split mbeta [Bombyx mori]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 68/99 (68%), Gaps = 6/99 (6%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q+EGEN+ KLEKADILELTVRHLH++ +      NPT +V RF
Sbjct: 48  RINRCLDELKELMVSALQSEGENVAKLEKADILELTVRHLHKLRRQRRLSLNPTVDVDRF 107

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQ 162
           +AGFT  A+E    L S+PG+D R+G +L+ HLG R+++
Sbjct: 108 RAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLNE 146

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357615019|gb|EHJ69428.1| enhancer of split mbeta-2 [Danaus plexippus]

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 63/83 (75%)

Query: 79  EEVQRFQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFL 138
           +E++    + +N++KLEKADILELTV HL ++ +P +P  E ++FQAGF QCA+EAC F+
Sbjct: 34  DELKDLMIDDDNLSKLEKADILELTVNHLTKLHRPKDPVMEAKKFQAGFGQCAAEACRFI 93

Query: 139 LSLPGLDTRVGKRLVEHLGKRIS 161
           +S+P LD++V + LV HL + I+
Sbjct: 94  MSVPDLDSKVSQNLVGHLSRLIT 116

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015332|ref|XP_002428313.1| Enhancer of split mgamma protein, putative [Pediculus humanus corporis] gi|212512909|gb|EEB15575.1| Enhancer of split mgamma protein, putative [Pediculus humanus corporis]

 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   QAEGEN++KLEKADILELTV HLH++ +      NP  +  RF
Sbjct: 33  RINRCLDELKELMVAALQAEGENVSKLEKADILELTVSHLHKLRRQQRLASNPVTDADRF 92

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSP 180
           +AGFT CA+E    L + PG+D ++G +L+ HLG R++   + +P L +  G +++P
Sbjct: 93  RAGFTHCATEVSRCLAATPGIDIKLGTKLMTHLGHRLNDMDKTSP-LSVRVGPAYTP 148

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328697370|ref|XP_001946911.2| PREDICTED: enhancer of split mgamma protein-like [Acyrthosiphon pisum]

 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 6/98 (6%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q EGEN++KLEKADILELTVRHLH++ +      NP  E+ RF
Sbjct: 33  RINRCLDELKELMVVALQNEGENVSKLEKADILELTVRHLHKLRRQQRLSGNPVTEMDRF 92

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRIS 161
           +AG+T+CASE    L + PGLD  +G  L+ HLG R++
Sbjct: 93  RAGYTRCASEVSRCLAATPGLDVTLGANLMTHLGHRLN 130

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375673|gb|EFR22996.1| hypothetical protein AND_13855 [Anopheles darlingi]

 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 84/141 (59%), Gaps = 11/141 (7%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q+EGEN+ KLEKADILELTVRHLH++ +      NP  +  RF
Sbjct: 47  RINRCLDELKELMVSALQSEGENVAKLEKADILELTVRHLHKLRRQQRLAANPVIDADRF 106

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGG 183
           +AGFT  A+E    L S PG+D ++G +L+ HLG R++   + +P L +  G S S +  
Sbjct: 107 RAGFTHAANEVSRCLASTPGVDIKLGTKLMTHLGHRLNDLDKVSP-LTVQIGSSSSSSSS 165

Query: 184 YERDDYATLPRDARVPSSLGS 204
              D+    P D ++P+S GS
Sbjct: 166 SSVDE----PEDIQMPASSGS 182

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610101|dbj|BAM18662.1| E(spl) region transcript mbeta [Papilio xuthus]

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/98 (50%), Positives = 65/98 (66%), Gaps = 6/98 (6%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q+EGEN+ KLEKADILELTVRHLH+I +      N T +  RF
Sbjct: 38  RINRCLDELKELMVSALQSEGENVAKLEKADILELTVRHLHKIRRQRRLSLNATVDADRF 97

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRIS 161
           +AGFT  A+E    L S+PG+D R+G +L+ HLG R++
Sbjct: 98  RAGFTHAANEVSRCLASIPGVDVRLGTQLMTHLGHRLN 135

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|251752778|dbj|BAH83644.1| enhancer of split mbeta-2 [Bombyx mori]

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 57/78 (73%)

Query: 84  FQAEGENINKLEKADILELTVRHLHRITKPHNPTEEVQRFQAGFTQCASEACGFLLSLPG 143
            + + +N++KLEKADILELTV HL ++  P +P  E ++FQAGF QCA+EAC F++S+P 
Sbjct: 37  LEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVLEAKKFQAGFGQCAAEACRFIMSVPD 96

Query: 144 LDTRVGKRLVEHLGKRIS 161
           LD  V + L+ HL + I+
Sbjct: 97  LDANVSQNLISHLSRLIT 114

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089129|ref|XP_972685.1| PREDICTED: similar to AGAP012342-PA [Tribolium castaneum] gi|270012431|gb|EFA08879.1| hypothetical protein TcasGA2_TC006580 [Tribolium castaneum]

 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 9/120 (7%)

Query: 70  RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPH----NPTEEVQRF 123
           RI +  D  +E  V   Q+EGEN++KLEKADILELTVRHLH++ +      NP  +  RF
Sbjct: 31  RINRCLDELKELMVTALQSEGENVSKLEKADILELTVRHLHKLRRQQRLSANPVVDADRF 90

Query: 124 QAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALLLSNGESFSPAGG 183
           +AG+T CA+E    L S+P +D ++G +L+ HLG R+++  +  P ++     +++P G 
Sbjct: 91  RAGYTHCANEVSRCLASIPHVDVQLGTKLMTHLGHRLNEMDKVAPLVI---QVAYTPPGS 147

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
FB|FBgn0002734	173	E(spl)mdelta-HLH "Enhancer of	0.240	0.462	0.397	2.2e-11
FB|FBgn0002633	186	E(spl)m7-HLH "Enhancer of spli	0.210	0.376	0.458	7.8e-11
FB|FBgn0002735	205	E(spl)mgamma-HLH "Enhancer of	0.307	0.497	0.348	1.3e-10
ZFIN|ZDB-GENE-030131-2376	253	her8a "hairy-related 8a" [Dani	0.545	0.715	0.291	5.6e-10
FB|FBgn0002733	195	E(spl)mbeta-HLH "Enhancer of s	0.448	0.764	0.298	5.5e-09
UNIPROTKB|J9NV17	157	HES4 "Uncharacterized protein"	0.331	0.700	0.347	2.7e-08
FB|FBgn0010109	435	dpn "deadpan" [Drosophila mela	0.635	0.485	0.271	3.8e-08
UNIPROTKB|Q9Y543	173	HES2 "Transcription factor HES	0.328	0.630	0.330	9.5e-08
UNIPROTKB|E1C412	227	HES6 "Uncharacterized protein"	0.268	0.392	0.385	3e-07
UNIPROTKB|E1C2Y3	182	HES6 "Uncharacterized protein"	0.222	0.406	0.402	7.6e-07

FB|FBgn0002734 E(spl)mdelta-HLH "Enhancer of split mdelta, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 35/88 (39%), Positives = 53/88 (60%)

Query:    81 VQRFQAEGENINKLEKADILELTVRHL-----HRITKPHNPTEE---VQRFQAGFTQCAS 132
             V    A+GE ++KLEKADILELTV +L      R+  P +P  +   + +F+AG+TQ A 
Sbjct:    43 VDTMDAQGEQVSKLEKADILELTVNYLKAQQQQRVANPQSPPPDQVNLDKFRAGYTQAAY 102

Query:   133 EACGFLLSLPGLDTRVGKRLVEHLGKRI 160
             E      ++PGLD + G  L++ LG ++
Sbjct:   103 EVSHIFSTVPGLDLKFGTHLMKQLGHQL 130

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IC;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IDA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0048052 "R1/R6 cell differentiation" evidence=IMP

FB|FBgn0002633 E(spl)m7-HLH "Enhancer of split m7, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 7.8e-11, P = 7.8e-11
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query:    93 KLEKADILELTVRHLHRI--TKPHNPTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGK 150
             K EKADILE+TV+HL ++  +K H P    Q F+AG+ + A+E    L SLP +D   G 
Sbjct:    51 KFEKADILEVTVQHLRKLKESKKHVPANPEQSFRAGYIRAANEVSRALASLPRVDVAFGT 110

Query:   151 RLVEHLGKRISQ 162
              L+ HLG R++Q
Sbjct:   111 TLMTHLGMRLNQ 122

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IGI;IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

FB|FBgn0002735 E(spl)mgamma-HLH "Enhancer of split mgamma, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 39/112 (34%), Positives = 64/112 (57%)

Query:    70 RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRIT--KPHNPT--EE---- 119
             RI K  D  ++  V   ++EGE++ +LEKADILELTV HL ++   + H     +E    
Sbjct:    30 RINKCLDELKDLMVATLESEGEHVTRLEKADILELTVTHLQKMKQQRQHKRASGDESLTP 89

Query:   120 VQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALL 171
              + F++G+    +E    L  LPG++  +G +L+ HLG+R++Q   A   +L
Sbjct:    90 AEGFRSGYIHAVNEVSRSLSQLPGMNVSLGTQLMTHLGQRLNQIQPAEKEVL 141

GO:0005634 "nucleus" evidence=IC;NAS

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP;IDA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0048749 "compound eye development" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0008134 "transcription factor binding" evidence=IGI

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

ZFIN|ZDB-GENE-030131-2376 her8a "hairy-related 8a" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 60/206 (29%), Positives = 93/206 (45%)

Query:    50 ENINKLEKADILELTVRHLHRITKPHDPTEEVQRFQAEGENIN--KLEKADILELTVRHL 107
             +N N  E+  + +  +    R  + +   E+++    +  N++  KLEKAD+LE+TV+H+
Sbjct:    44 KNFNAKEERKLRKPLIEKKRR-ERINSSLEQLKGIMVDAYNLDQSKLEKADVLEITVQHM 102

Query:   108 HRITKPH------NPT---EEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGK 158
               + + H      +P    E  QR+ +G+ QC  E    LLS PG+D  +G RL+ HL K
Sbjct:   103 ENLQRGHGQGGSNSPGTGFESRQRYSSGYIQCMHEVHNLLLSCPGMDKTLGARLLNHLLK 162

Query:   159 RISQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARV------PSSLGSATQDSLR- 211
              +   +   P+   S G S SP           LP   +       PS   S T   +R 
Sbjct:   163 SLPH-ISTEPSGTSSAGTS-SPLPLSPTQSPINLPSSLQPHALLLSPSPPSSPTHSLVRP 220

Query:   212 ---SGVADNASSQSSAMMLPQSNPGM 234
                S    + S QS A  LP   PG+
Sbjct:   221 REQSSPPSSPSPQSPAS-LPPFFPGV 245

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0050768 "negative regulation of neurogenesis" evidence=IMP

GO:0042063 "gliogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

FB|FBgn0002733 E(spl)mbeta-HLH "Enhancer of split mbeta, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 54/181 (29%), Positives = 82/181 (45%)

Query:    70 RITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHR-----------ITKPHNP 116
             RI K  D  ++  V+    EGE+I +LEKADILELTV H+ +           +T   +P
Sbjct:    28 RINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEHMKKLRAQKQLRLSSVTGGVSP 87

Query:   117 TEE-----VQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEANPALL 171
             + +      + F+AG+   A+E    L ++PG+   +G +L+ HLG R++      P+L 
Sbjct:    88 SADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGTQLMSHLGHRLNYLQVVVPSLP 147

Query:   172 LSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSN 231
             +       P      D     P     PS       DSL SG    A S++S+   P   
Sbjct:   148 IG-----VPLQAPVEDQAMVTPP----PSEC-----DSLESGACSPAPSEASSTSGPMWR 193

Query:   232 P 232
             P
Sbjct:   194 P 194

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEP;ISS

GO:0005634 "nucleus" evidence=IC;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|J9NV17 HES4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 42/121 (34%), Positives = 58/121 (47%)

Query:    84 FQAEGENINKLEKADILELTVRHLH-----RITKPHNPTEEVQ-RFQAGFTQCASEACGF 137
             F+ +    +KLEKADILE+TVRHL      ++T   +    V  +++AGF +C +E   F
Sbjct:    30 FRKDSSRHSKLEKADILEMTVRHLQSLRRVQVTAALSADPAVLGKYRAGFNECLAEVNRF 89

Query:   138 LLSLPGLDTRVGKRLVEHLGKRISQ-SLEANPALLLSNGESFSP----AGGYERDDYATL 192
             L    G+   V  RL+ HL   + Q      PA      E+  P    AGG E    AT 
Sbjct:    90 LAGCEGVPAEVRSRLLGHLAACLGQLGPSRRPAPAPPAAEARGPGSCAAGGPEHAPRATP 149

Query:   193 P 193
             P
Sbjct:   150 P 150

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0010109 dpn "deadpan" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 65/239 (27%), Positives = 104/239 (43%)

Query:    93 KLEKADILELTVRHLHRITKPH------NPTEEVQRFQAGFTQCASEACGFLLSLPGLDT 146
             KLEKADILE+TV+HL  + +        +    VQ+F+ GF +CA E   ++  + G+DT
Sbjct:    80 KLEKADILEMTVKHLQSVQRQQLNMAIQSDPSVVQKFKTGFVECAEEVNRYVSQMDGIDT 139

Query:   147 RVGKRLVEHLGKRISQSLEANPALL-LSNGE--SFSPAGGYERDD---YATLPRD----A 196
              V +RL  HL +  + SLE   ++   SNG      PA          + +LP+D    +
Sbjct:   140 GVRQRLSAHLNQ-CANSLEQIGSMSNFSNGYRGGLFPATAVTAAPTPLFPSLPQDLNNNS 198

Query:   197 RVPSSLGSATQDSLRSGVADNASSQSSAMMLPQSN-----PGMSLNLPNSS--LHPYTCD 249
             R  SS  +     L+  +     S   A+++P +      PG     P S+  +   T  
Sbjct:   199 RTESSAPAIQMGGLQL-IPSRLPSGEFALIMPNTGSAAPPPG-PFAWPGSAAGVAAGTAS 256

Query:   250 EATLHVVG-VRMGDYVGNRVLLAFTGHTQTG-PINYMKNEITNDRQLVQCMISDGSCPP 306
              A   +     + DY  +  + AF+    T  P N  +N I       Q  + + + PP
Sbjct:   257 AALASIANPTHLNDYTQSFRMSAFSKPVNTSVPANLPENLIHTLPGQTQLPVKNSTSPP 315

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0007549 "dosage compensation" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0007540 "sex determination, establishment of X:A ratio" evidence=IGI;NAS;IMP

GO:0005634 "nucleus" evidence=IC;IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007530 "sex determination" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IGI

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

UNIPROTKB|Q9Y543 HES2 "Transcription factor HES-2" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 9.5e-08, P = 9.5e-08
 Identities = 39/118 (33%), Positives = 56/118 (47%)

Query:    87 EGENINKLEKADILELTVRHLHRITKPHNPTEE---VQRFQAGFTQCASEACGFLLSLPG 143
             E  N +KLEKAD+LE+TVR L  +     PT        ++ G++ C +     L +   
Sbjct:    47 ENSNCSKLEKADVLEMTVRFLQELPASSWPTAAPLPCDSYREGYSACVARLARVLPACRV 106

Query:   144 LDTRVGKRLVEHLGKRI-SQSLEANPALLLSNGESFSPAGGYERDDYATLPRDARVPS 200
             L+  V  RL+EHL +R  S +L+   A     G+S  P+        A  P  A VPS
Sbjct:   107 LEPAVSARLLEHLWRRAASATLDGGRA-----GDSSGPSAPAPAPASAPEPASAPVPS 159

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008134 "transcription factor binding" evidence=NAS

UNIPROTKB|E1C412 HES6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 138 (53.6 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 37/96 (38%), Positives = 50/96 (52%)

Query:    92 NKLEKADILELTVRHLHRITKPHNPT------EEVQRFQAGFTQCASEACGFLLSLPGLD 145
             +KLEKADILE+TV+HL  I             E  QR+  G+ QC  E    LL+   +D
Sbjct:    55 SKLEKADILEMTVKHLQNIQNSKLMADSKVGLEAQQRYSTGYIQCMHEVHNLLLTCEWMD 114

Query:   146 TRVGKRLVEHLGKRISQSLE-ANPALLLSNGESFSP 180
               +G RL+ HL K + +S E  + A L S+  S  P
Sbjct:   115 KTLGARLLNHLLKSLPRSSEDTSKAALSSSSPSQQP 150

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

UNIPROTKB|E1C2Y3 HES6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 33/82 (40%), Positives = 46/82 (56%)

Query:    92 NKLEKADILELTVRHLHRI--TKPHNPT------EEVQRFQAGFTQCASEACGFLLSLPG 143
             +KLEKADILE+TV+HL  I  +K  +        E  QR+  G+ QC  E    LL+   
Sbjct:    54 SKLEKADILEMTVKHLQNIQNSKLMDTADSKVGLEAQQRYSTGYIQCMHEVHNLLLTCEW 113

Query:   144 LDTRVGKRLVEHLGKRISQSLE 165
             +D  +G RL+ HL K + +S E
Sbjct:   114 MDKTLGARLLNHLLKSLPRSSE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
pfam07527	42	pfam07527, Hairy_orange, Hairy Orange	1e-07
smart00511	45	smart00511, ORANGE, Orange domain	2e-07

>gnl|CDD|219453 pfam07527, Hairy_orange, Hairy Orange

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 122 RFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQ 162
           +F+AGF +C +E   FL S+ G+D  V  RL+ HL   ++Q
Sbjct: 1   KFRAGFRECLNEVARFLSSVEGVDPDVRARLLSHLASCLNQ 41

The Orange domain is found in the Drosophila proteins Hesr-1, Hairy, and Enhancer of Split. The Orange domain is proposed to mediate specific protein-protein interaction between Hairy and Scute. Length = 42

>gnl|CDD|128787 smart00511, ORANGE, Orange domain

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSL 164
             F++G+ +CA+E   FL  LPG D  V  RL+ HL   ++Q L
Sbjct: 1   SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL 44

This domain confers specificity among members of the Hairy/E(SPL) family. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG4304|consensus	250		99.97
PF07527	43	Hairy_orange: Hairy Orange; InterPro: IPR003650 Th	99.32
smart00511	45	ORANGE Orange domain. This domain confers specific	99.25
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	98.27
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	98.22
smart00353	53	HLH helix loop helix domain.	98.2
KOG4304|consensus	250		97.22
KOG3561|consensus	803		96.66
KOG1319|consensus	229		95.81
KOG1318|consensus	411		94.89
KOG3560|consensus	712		94.69
KOG3960|consensus	284		90.79
KOG0561|consensus	373		83.86
KOG2483|consensus	232		81.81
KOG2588|consensus	953		81.34
KOG4029|consensus	228		80.35

>KOG4304|consensus

Probab=99.97  E-value=2.1e-32  Score=255.17  Aligned_cols=114  Identities=33%  Similarity=0.573  Sum_probs=103.4

Q ss_pred             cccccchhhHHHHHHHhhhccCCCCCCchh--hHHhhhcccccchhhhhhhHHHHHHHHhhccCCCCC-------hHHHH
Q psy14691         51 NINKLEKADILELTVRHLHRITKPHDPTEE--VQRFQAEGENINKLEKADILELTVRHLHRITKPHNP-------TEEVQ  121 (332)
Q Consensus        51 ~~~Kl~K~~ILEmEKRRRaRIN~sL~eLK~--le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~~p-------~~a~e  121 (332)
                      ..+|..|+.|   |||||||||+||+|||+  ++++++++.+++||||||||||||+|||++++.+.+       ....+
T Consensus        30 ~~rk~~Kpl~---EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~~~~d  106 (250)
T KOG4304|consen   30 QYRKVRKPLL---EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAALPVD  106 (250)
T ss_pred             HHhhhcchhH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccccccccccch
Confidence            4678888854   69999999999999999  689999988999999999999999999999876521       35789


Q ss_pred             hHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhcccCC
Q psy14691        122 RFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSLEAN  167 (332)
Q Consensus       122 ~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~~q~~  167 (332)
                      +|++||++|+.||++||+.+|+++..++.+|++||+.+++++.+..
T Consensus       107 ~f~~Gf~ec~~EVsr~ls~~~~~~~~~~~~L~~HL~~~~~~~~~~~  152 (250)
T KOG4304|consen  107 SFRAGFRECAAEVSRYLSICPGMDAAKGTRLLTHLQAHLAQLEQST  152 (250)
T ss_pred             hhhccHHHHHHHHHHHHhhCCCCChHHHhHHHHHHHHHhhcccCcc
Confidence            9999999999999999999999999999999999999999999744

>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family

Probab=99.32  E-value=1.6e-12  Score=91.91  Aligned_cols=43  Identities=37%  Similarity=0.714  Sum_probs=36.7

Q ss_pred             HhHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhc
Q psy14691        121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQS  163 (332)
Q Consensus       121 e~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~  163 (332)
                      ++|++||++|++||++||++.+++++.++.+|++||+++++++
T Consensus         1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~~   43 (43)
T PF07527_consen    1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQI   43 (43)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH-
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999999999999999998764

HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.

>smart00511 ORANGE Orange domain

Probab=99.25  E-value=8.3e-12  Score=88.64  Aligned_cols=44  Identities=41%  Similarity=0.770  Sum_probs=41.1

Q ss_pred             HhHHHhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHHhhhhcc
Q psy14691        121 QRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEHLGKRISQSL  164 (332)
Q Consensus       121 e~FrsGF~eCa~EVsrFLss~pgvd~~l~~rLLsHL~~~l~~~~  164 (332)
                      ++|++||++|+.||++||++.++++++++.+||+||+.+++++.
T Consensus         1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~~   44 (45)
T smart00511        1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL   44 (45)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999999999999999999999988764

This domain confers specificity among members of the Hairy/E(SPL) family.

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=98.27  E-value=9.7e-08  Score=69.32  Aligned_cols=48  Identities=25%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhcc
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRIT  111 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq  111 (332)
                      +.|++||++||.++++|+. ++...  .....|+.|++||+.|+.|++.||
T Consensus         7 ~~Er~RR~~i~~~~~~L~~llp~~~--~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    7 ERERRRRDRINDCFDELRELLPSCS--AGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSSHH--CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchh--ccccccCCHHHHHHHHHHHHHHhC
Confidence            3479999999999999999 44321  224589999999999999999875

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=98.22  E-value=1.4e-07  Score=68.27  Aligned_cols=46  Identities=24%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||++||.++++|+. ++...    ...|+.|++||++||+|++.|+.
T Consensus        11 ~Er~RR~~~n~~~~~L~~llp~~~----~~~k~~k~~iL~~a~~yI~~L~~   57 (60)
T cd00083          11 RERRRRERINDAFDELRSLLPTLP----PSKKLSKAEILRKAVDYIKSLQE   57 (60)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 43322    34899999999999999999875

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=98.20  E-value=1.9e-07  Score=66.62  Aligned_cols=46  Identities=24%  Similarity=0.390  Sum_probs=38.9

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||++||.++++|+. ++...    ...|+.|++||++|++|++.|+.
T Consensus         3 ~Er~RR~~~n~~~~~L~~lip~~~----~~~k~~k~~iL~~ai~yi~~L~~   49 (53)
T smart00353        3 RERRRRRKINEAFDELRSLLPTLP----NNKKLSKAEILRLAIEYIKSLQE   49 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 43322    24899999999999999998875

>KOG4304|consensus

Probab=97.22  E-value=0.00011  Score=69.66  Aligned_cols=46  Identities=33%  Similarity=0.530  Sum_probs=40.2

Q ss_pred             ccccccCCC---hHHHHHHHHhhcccccccchhhHHHHHHHhhhccCCC
Q psy14691         29 VEFSLHHPA---DEEMTKIITAEGENINKLEKADILELTVRHLHRITKP   74 (332)
Q Consensus        29 ~~f~l~~~l---k~lm~~~l~~~~~~~~Kl~K~~ILEmEKRRRaRIN~s   74 (332)
                      .+-+||+||   |++|.+.++.++....||+|+|||||+++|.+.+++.
T Consensus        43 RRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~   91 (250)
T KOG4304|consen   43 RRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS   91 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            455799998   6799999999988999999999999999999887653

>KOG3561|consensus

Probab=96.66  E-value=0.0005  Score=74.38  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .|||||+.+|..|+||-. +.+...   -..|++|--||+|||+|||.+...
T Consensus        27 ~EKrRRdq~N~yI~ELs~Mvp~~~~---~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   27 IEKRRRDQMNKYIEELSEMVPTNAS---LSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcchh---cccCchHHHHHHHHHHHHHHHhhh
Confidence            379999999999999999 543221   358999999999999999988764

>KOG1319|consensus

Probab=95.81  E-value=0.0065  Score=56.78  Aligned_cols=78  Identities=17%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             hhhHHHHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCCC-----------ChHHHHhHH
Q psy14691         57 KADILELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPHN-----------PTEEVQRFQ  124 (332)
Q Consensus        57 K~~ILEmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~~-----------p~~a~e~Fr  124 (332)
                      |+--+..|.+||+-||+--+.|+. ++.....-+.--||-||-||.-|++|+..|.+++.           .+.+.+...
T Consensus        63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk  142 (229)
T KOG1319|consen   63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIK  142 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556789999999999999999 55544332333499999999999999999987641           135677788


Q ss_pred             HhHHHHHHHH
Q psy14691        125 AGFTQCASEA  134 (332)
Q Consensus       125 sGF~eCa~EV  134 (332)
                      .||.+=++-+
T Consensus       143 ~~YEqM~~~~  152 (229)
T KOG1319|consen  143 VNYEQMVKAH  152 (229)
T ss_pred             HHHHHHHHhc
Confidence            8887655544

>KOG1318|consensus

Probab=94.89  E-value=0.0043  Score=62.98  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=39.7

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      |.|+|||+.||.-+.||.. ++...   +...|++|.-||--+|+|++.+++.
T Consensus       239 eVERRRR~nIN~~IkeLg~liP~~~---~~~~~~nKgtILk~s~dYIr~Lqq~  288 (411)
T KOG1318|consen  239 EVERRRRENINDRIKELGQLIPKCN---SEDMKSNKGTILKASCDYIRELQQT  288 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC---cchhhcccchhhHHHHHHHHHHHHH
Confidence            3479999999999999999 43222   2347999999999999999998863

>KOG3560|consensus

Probab=94.69  E-value=0.0081  Score=63.24  Aligned_cols=43  Identities=30%  Similarity=0.424  Sum_probs=35.7

Q ss_pred             HHhhhccCCCCCCchhhHHhhhcccccchhhhhhhHHHHHHHHhh
Q psy14691         65 VRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHR  109 (332)
Q Consensus        65 KRRRaRIN~sL~eLK~le~~~k~~s~~sKLEKADILEMTVkyLK~  109 (332)
                      ||||+|+|.-|+.|-+|--+..+  ..+||+|--||.++|.|||.
T Consensus        34 KRHRdRLNaELD~lAsLLPfpqd--iisKLDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   34 KRHRDRLNAELDHLASLLPFPQD--IISKLDKLSVLRLSVSYLRV   76 (712)
T ss_pred             hhHHHHhhhHHHHHHHhcCCCHH--HHhhhhhhhhhhhhHHHHHH
Confidence            89999999888877774334443  68999999999999999985

>KOG3960|consensus

Probab=90.79  E-value=0.081  Score=51.33  Aligned_cols=52  Identities=19%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             chhhHHHHHHHhhhccCCCCCCchhhHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         56 EKADILELTVRHLHRITKPHDPTEEVQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        56 ~K~~ILEmEKRRRaRIN~sL~eLK~le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      +|+--+- ||||++++|+..+.||+=.    -..-+-+|=|-|||.-+++|+..||.
T Consensus       119 RKAATMR-ERRRLkKVNEAFE~LKRrT----~~NPNQRLPKVEILRsAI~YIE~Lq~  170 (284)
T KOG3960|consen  119 RKAATMR-ERRRLKKVNEAFETLKRRT----SSNPNQRLPKVEILRSAIRYIERLQA  170 (284)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhhc----CCCccccccHHHHHHHHHHHHHHHHH
Confidence            4443333 6888899999988888811    11134688899999999999998763

>KOG0561|consensus

Probab=83.86  E-value=0.38  Score=48.03  Aligned_cols=46  Identities=26%  Similarity=0.406  Sum_probs=37.3

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH  114 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~  114 (332)
                      |+||..-||.-...||. ++  +++|   .||-||-||+.|-+|+-.|.+++
T Consensus        68 ERRRMQSINAGFqsLr~LlP--r~eG---EKLSKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   68 ERRRMQSINAGFQSLRALLP--RKEG---EKLSKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             HHHHHHhhhHHHHHHHHhcC--cccc---hhhHHHHHHHHHHHHHHHHHhcc
Confidence            47888889988888888 33  3443   69999999999999999987665

>KOG2483|consensus

Probab=81.81  E-value=0.28  Score=46.67  Aligned_cols=47  Identities=15%  Similarity=0.307  Sum_probs=34.8

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      +||+|||-|..|++.||. ++....+ .+..   -+-||.-++.|++.++..
T Consensus        66 LEk~RRahlk~~~~~Lk~~vP~~~~~-~~~t---~lsiL~kA~~~i~~l~~~  113 (232)
T KOG2483|consen   66 LEKRRRAHLKDCFESLKDSVPLLNGE-TRST---TLSILDKALEHIQSLERK  113 (232)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCCCc-chhh---hhHhhhhHHHHHHHHHhH
Confidence            459999999999999999 4433322 1111   678889999999988764

>KOG2588|consensus

Probab=81.34  E-value=1.2  Score=49.86  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH  114 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~  114 (332)
                      |||+|--||..+.|||+ +.-      ...|+-|...|.-+.+|++.++...
T Consensus       284 EKRYRsSINDKI~eLk~lV~g------~~aKl~kSavLr~ai~~i~dl~~~n  329 (953)
T KOG2588|consen  284 EKRYRSSINDKIIELKDLVPG------TEAKLNKSAVLRKAIDYIEDLQGYN  329 (953)
T ss_pred             HHHhhcchhHHHHHHHHhcCc------cHhhhhhhhhHHHHHHHHHHhhccc
Confidence            59999999999999999 321      2389999999999999999988653

>KOG4029|consensus

Probab=80.35  E-value=0.44  Score=44.03  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      +.|+.|-.-+|...++||. ++..-.   ...||=|.|+|.++++|++.|+.
T Consensus       115 ~RER~Rv~~vN~~f~~Lr~~lP~~~~---~~kklSKveTLr~A~~YI~~L~~  163 (228)
T KOG4029|consen  115 ARERQRVQSVNSAFAELRALLPTEPP---QSKKLSKVETLRLATSYIRYLTK  163 (228)
T ss_pred             hhhhhcccchhhhhHHHHhcCCCCCC---cccccCcccchHHHHHHHHHHHH
Confidence            3467777889999999999 433222   14899999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 43/267 (16%), Positives = 74/267 (27%), Gaps = 76/267 (28%)

Query: 53  NKLEKADILELTVRHLHRITKP---------------HDPTEEVQRFQAEGENINKL--- 94
           N      +LE+  + L++I                  H    E++R        N L   
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 95  ---EKADILE---------LTVR------------HLHRITKPHNPT---EEVQRFQAGF 127
              + A             LT R              H     H+ T   +EV+     +
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 128 TQCA-----SEACG---FLLSLPGLDTRVG--------KRLVEHLGKRISQSLEA-NPAL 170
             C       E        LS+     R G            + L   I  SL    PA 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 171 LLSNGESFSPAGGYERDDYATLPRDARVPSS-LGSATQDSLRSGVADNASSQSSAMMLPQ 229
                        ++    +  P  A +P+  L     D ++S V    +      ++ +
Sbjct: 371 YRKM---------FD--RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 230 SNPGMSLNLPN--SSLHPYTCDEATLH 254
                ++++P+    L     +E  LH
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 50/299 (16%), Positives = 87/299 (29%), Gaps = 88/299 (29%)

Query: 34  HHPADEEMT-------KIITAEGENINK-LEKADILELT--------VRHLHRITKPHD- 76
           HH  D E          I++   +      +  D+ ++         + H+  I      
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAV 61

Query: 77  -------------PTEEVQRFQAEGENIN--------KLEKADILELTVRHLHRITKPHN 115
                          E VQ+F  E   IN        K E+     +T  ++ +  + +N
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 116 -----PTEEVQRFQAGFTQCASEACGFLLSLPGLDTRVGKRLVEH----LGKRISQSLEA 166
                    V R Q  + +   +A   LL L     R  K ++       GK     + A
Sbjct: 122 DNQVFAKYNVSRLQP-YLK-LRQA---LLEL-----RPAKNVLIDGVLGSGK---TWV-A 167

Query: 167 NPALLLSNGESFSPAGGYERDDYATLPRDARVPSSLGSATQDSLRSGVADNASSQSSAMM 226
               L    +       +    +  L       + L       L   +  N +S+S    
Sbjct: 168 LDVCLSYKVQCKMDFKIF----WLNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHS- 220

Query: 227 LPQSNPGMSLNLPNSSL------HPYTCDEATLHVVGVRMGDYVGN-RVLLAFTGHTQT 278
              SN  + ++   + L       PY   E  L V+       V N +   AF    + 
Sbjct: 221 ---SNIKLRIHSIQAELRRLLKSKPY---ENCLLVL-----LNVQNAKAWNAFNLSCKI 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
2db7_A	64	Hairy/enhancer-OF-split related with YRPW motif 1;	99.2
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.08
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.08
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.79
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.57
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.21
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	98.06
4ati_A	118	MITF, microphthalmia-associated transcription fact	98.04
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	97.99
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	97.95
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	97.91
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	97.39
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	97.07
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	97.06
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	96.92
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	96.81
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	96.4
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	94.02
4ath_A	83	MITF, microphthalmia-associated transcription fact	88.94

>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1

Probab=99.20  E-value=1.2e-11  Score=94.37  Aligned_cols=50  Identities=30%  Similarity=0.539  Sum_probs=43.8

Q ss_pred             CChHHHHhHHH-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHHhhhhcc
Q psy14691        115 NPTEEVQRFQA-GFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQSL  164 (332)
Q Consensus       115 ~p~~a~e~Frs-GF~eCa~EVsrFLss~pgvd~~--l~~rLLsHL~~~l~~~~  164 (332)
                      ++.....+|++ ||++|++||+|||+++|++++.  ++.|||+||+.++++++
T Consensus        11 d~~~~~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~~e   63 (64)
T 2db7_A           11 DAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQRE   63 (64)
T ss_dssp             CHHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhccC
Confidence            34456789995 9999999999999999999976  99999999999998765

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.08  E-value=9.1e-12  Score=96.72  Aligned_cols=48  Identities=19%  Similarity=0.326  Sum_probs=40.5

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      ++||+||+|||.+|++|+. ++... +  ..+|+|||+||++||+||+.++.
T Consensus        15 ~~ERrRR~rIN~~l~eL~~LvP~~~-~--~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A           15 QIEKRRRDKMNSFIDELASLVPTCN-A--MSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSHHHH-T--CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHccccc-c--ccccccHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999 44333 2  34899999999999999999875

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.08  E-value=6.9e-12  Score=94.59  Aligned_cols=52  Identities=10%  Similarity=0.055  Sum_probs=42.2

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH  114 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~  114 (332)
                      +|++||+|||.++++|+. ++...+.....+|++||+||||||+|++.|+++.
T Consensus         9 aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            9 AEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             GTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999 4433333223589999999999999999998753

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.79  E-value=3.3e-10  Score=87.89  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=38.4

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .||+||+|||.++.+|+. ++    .  ..+|++||+||++||+||+.|+.
T Consensus        15 iErrRRd~IN~~i~eL~~LvP----~--~~~K~dK~sIL~~aI~yik~Lq~   59 (71)
T 4h10_B           15 SEKKRRDQFNVLIKELGSMLP----G--NARKMDKSTVLQKSIDFLRKHKE   59 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSS----S--CCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHhCC----C--CCCCCcHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 43    1  34799999999999999999875

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.57  E-value=1.1e-09  Score=81.77  Aligned_cols=50  Identities=12%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      +|++||++||.++++|+. ++..... +...|++||+||++||+||+.|+++
T Consensus        12 ~Er~RR~~in~~~~~L~~lvP~~~~~-~~~~k~~Ka~IL~~ai~YI~~Lq~~   62 (65)
T 1an4_A           12 VERRRRDKINNWIVQLSKIIPDSSME-STKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCC-SSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCcccc-cccCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 4433322 1236999999999999999999865

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.21  E-value=7.2e-08  Score=90.26  Aligned_cols=42  Identities=12%  Similarity=0.222  Sum_probs=37.3

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhcc
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRIT  111 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq  111 (332)
                      ||+||+|||..+.+|+. ++    .  ..+||+||.||++||.|||.++
T Consensus        20 e~~rr~~~n~~~~~l~~~~p----~--~~~~~dk~~il~~~~~~~~~~~   62 (361)
T 4f3l_A           20 EKKRRDQFNVLIKELGSMLP----G--NARKMDKSTVLQKSIDFLRKHK   62 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC----S--SSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCC----C--CCCCcCHHHHHHHHHHHHHHHH
Confidence            69999999999999999 44    2  3489999999999999999876

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=98.06  E-value=2.6e-07  Score=72.32  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .|++||++||..+.+|+. ++.      ...|+.||+||+.||+|++.|+.+
T Consensus        13 ~ErrRR~~in~~f~~L~~lvP~------~~~k~~Ka~IL~~Ai~YI~~Lq~~   58 (82)
T 1am9_A           13 IEKRYRSSINDKIIELKDLVVG------TEAKLNKSAVLRKAIDYIRFLQHS   58 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC------SSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccC------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999 432      238999999999999999998863

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=98.04  E-value=2.5e-07  Score=77.07  Aligned_cols=47  Identities=13%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||++||..+.+|+. ++...+   ...|++||.||++||+||+.|++
T Consensus        34 ~ERrRR~~In~~~~~L~~lvP~~~~---~~~k~~Ka~IL~~aieYIk~Lq~   81 (118)
T 4ati_A           34 IERRRRFNINDRIKELGTLIPKSND---PDMRWNKGTILKASVDYIRKLQR   81 (118)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC---ccccCCHHHHHHHHHHHHHHHHH
Confidence            369999999999999999 443332   13799999999999999999875

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.99  E-value=7.7e-07  Score=84.50  Aligned_cols=48  Identities=19%  Similarity=0.316  Sum_probs=40.4

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .|||||+|||..+.+|+. ++... +  ..+||+||.||++||.|||.++..
T Consensus        20 ~ek~rR~~~n~~~~~L~~l~p~~~-~--~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           20 IEKRRRDKMNSFIDELASLVPTCN-A--MSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHH-H--CSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcchHHHHHHHHHHHHhcCCCC-c--cccccCHHHHHHHHHHHHHHhhcc
Confidence            479999999999999999 44432 2  358999999999999999998754

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=97.95  E-value=6.8e-07  Score=69.47  Aligned_cols=45  Identities=18%  Similarity=0.286  Sum_probs=39.0

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||++||.++++|+. ++.+.     ..|+.||+||.+||.|++.|+.
T Consensus         9 ~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~   54 (83)
T 1nkp_B            9 LERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRR   54 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSGGGT-----TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 54332     3799999999999999999886

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.91  E-value=9.1e-07  Score=68.53  Aligned_cols=45  Identities=18%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||..||.++++|+. ++.+.     ..|+.|++||.+||.|++.|+.
T Consensus        19 ~Er~RR~~in~~f~~Lr~lvP~~~-----~~k~sK~~iL~~Ai~YI~~L~~   64 (80)
T 1hlo_A           19 LERKRRDHIKDSFHSLRDSVPSLQ-----GEKASRAQILDKATEYIQYMRR   64 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGGGT-----TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCC-----CCCccHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 54333     2699999999999999999875

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.39  E-value=1.6e-05  Score=63.16  Aligned_cols=48  Identities=10%  Similarity=0.137  Sum_probs=40.5

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      ++|++||+.||.+++.|+. ++.+..    ..|+-|+.||..|+.|++.|+..
T Consensus        12 ~~ER~RR~~ln~~f~~Lr~~vP~~~~----~~K~sK~~iL~~A~~YI~~L~~~   60 (88)
T 1nkp_A           12 VLERQRRNELKRSFFALRDQIPELEN----NEKAPKVVILKKATAYILSVQAE   60 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGTT----CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999 554432    37999999999999999998864

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=97.07  E-value=3.3e-05  Score=60.53  Aligned_cols=47  Identities=9%  Similarity=0.122  Sum_probs=39.3

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      ++|++||+.||.|++.|+. ++.+.    ...|+-|++||..++.|++.|+.
T Consensus         7 ~~ER~RR~~lk~~f~~Lr~~vP~~~----~~~k~sk~~iL~kA~~yI~~L~~   54 (80)
T 1nlw_A            7 EMEKNRRAHLRLSLEKLKGLVPLGP----DSSRHTTLSLLTKAKLHIKKLED   54 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCS----SSCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999 54332    23788899999999999999876

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.06  E-value=1.2e-05  Score=62.14  Aligned_cols=45  Identities=13%  Similarity=0.163  Sum_probs=38.1

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      |++|++.||.+++.||. ++.+..    ..||-|.|||.+++.|++.||.
T Consensus        22 ER~Rm~~lN~aF~~LR~~VP~~p~----~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           22 PLSLLDDMNHCYSRLRELVPGVPR----GTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CSCSSSHHHHHHHHHHHHCCCCCT----TCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC----CCCccHHHHHHHHHHHHHHHHc
Confidence            58888999999999999 554432    3799999999999999999875

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=96.92  E-value=0.0001  Score=57.36  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=36.6

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      |++||..||.++++|+. ++..... .  .++-|.+||..||+|++.|+++
T Consensus        13 ER~Rr~~IN~~f~~Lr~~vP~~~~~-~--K~~sK~~IL~~AieYI~~Lq~~   60 (76)
T 3u5v_A           13 ERKRRRDINEAFRELGRMCQMHLKS-D--KAQTKLLILQQAVQVILGLEQQ   60 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCC-C--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHcCCCCCc-c--ccccHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999 5532211 1  2336899999999999998753

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=96.81  E-value=6.1e-05  Score=56.23  Aligned_cols=46  Identities=17%  Similarity=0.300  Sum_probs=38.5

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      -|++|+..||..++.|+. ++...    ...||-|.|||.+++.|++.|+.
T Consensus         9 rER~R~~~iN~af~~LR~~lP~~~----~~~klSKi~tLr~Ai~YI~~L~~   55 (60)
T 2ql2_B            9 RERNRMHGLNAALDNLRKVVPCYS----KTQKLSKIETLRLAKNYIWALSE   55 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCC----SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCC----CcCcCCHHHHHHHHHHHHHHHHH
Confidence            369999999999999999 54432    23799999999999999998864

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=96.40  E-value=0.00021  Score=54.63  Aligned_cols=45  Identities=16%  Similarity=0.277  Sum_probs=37.9

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++|+..||..++.|+. ++..   +  ..||-|.+||.++++|++.|+.
T Consensus        19 rER~R~~~iN~af~~LR~~iP~~---~--~~KlSKi~tLr~Ai~YI~~L~~   64 (68)
T 1mdy_A           19 RERRRLSKVNEAFETLKRSTSSN---P--NQRLPKVEILRNAIRYIEGLQA   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSC---T--TSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC---C--CCCCCHHHHHHHHHHHHHHHHH
Confidence            469999999999999999 5432   1  3699999999999999998874

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=94.02  E-value=0.0037  Score=51.15  Aligned_cols=60  Identities=15%  Similarity=0.127  Sum_probs=39.3

Q ss_pred             HHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC--CChHHHHhHHHhHH
Q psy14691         64 TVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH--NPTEEVQRFQAGFT  128 (332)
Q Consensus        64 EKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~--~p~~a~e~FrsGF~  128 (332)
                      |+.|...+|..++.||. ++.+.    ...||-|-|||.+++.|++.|+..-  .+. ....|.+||.
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~-~~~~~~~g~~   95 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIP----QNKKVSKMEILQHVIDYILDLQIALDSHLK-PSFLVQSGDI   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSC----SSSCCCHHHHHHHHHHHHHHHHHHHHTTTS-TTCC------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCC----CCCcccHHHHHHHHHHHHHHHHHHHhcCCC-CcchhhcCcc
Confidence            36777889999999999 55443    2379999999999999999987421  111 2334777775

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=88.94  E-value=0.018  Score=46.04  Aligned_cols=44  Identities=11%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             hhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCCC
Q psy14691         68 LHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKPH  114 (332)
Q Consensus        68 RaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q~  114 (332)
                      |..||..+.+|.. ++.. .+  ...|..|+-||..||+|++.|++..
T Consensus         4 R~nIN~~I~EL~~LiP~~-~~--~~~k~nKg~IL~ksvdYI~~Lq~e~   48 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKS-ND--PDMRWNKGTILKASVDYIRKLQREQ   48 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCC-CC--TTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred             hhhHHHhhhhhhccCCCC-CC--cccCcchHHHHHHHHHHHHHHHHHH
Confidence            6678888888888 3222 12  3489999999999999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d2db7a1	55	a.273.1.1 (A:3-57) Hairy/enhancer-of-split related	0.002

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 116 PTEEVQRFQA-GFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQ 162
                  +++ GF +C +E   +L  + GLD    +  RLV HL    SQ
Sbjct: 5   AHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d2db7a1	55	Hairy/enhancer-of-split related with YRPW motif pr	99.24
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	98.84
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	98.35
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	98.09
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	97.97
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	96.11

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.6e-12  Score=94.02  Aligned_cols=47  Identities=32%  Similarity=0.579  Sum_probs=41.1

Q ss_pred             ChHHHHhHHH-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHHhhhh
Q psy14691        116 PTEEVQRFQA-GFTQCASEACGFLLSLPGLDTR--VGKRLVEHLGKRISQ  162 (332)
Q Consensus       116 p~~a~e~Frs-GF~eCa~EVsrFLss~pgvd~~--l~~rLLsHL~~~l~~  162 (332)
                      |....-+|++ ||++|+.||.|||++.+|++.+  ++.|||+||+.|+++
T Consensus         5 ~~~la~~yra~GF~ECa~EV~RyL~~~eg~d~~d~~r~RLl~HL~~C~~q   54 (55)
T d2db7a1           5 AHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ   54 (55)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHhc
Confidence            3333448888 9999999999999999999876  999999999999876

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=7.4e-11  Score=86.37  Aligned_cols=51  Identities=10%  Similarity=0.065  Sum_probs=42.0

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .||+||++||.++++|+. ++..........|++||+||++||+|++.|+++
T Consensus         9 ~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~   60 (63)
T d1a0aa_           9 AEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             GTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHh
Confidence            379999999999999999 543332223568999999999999999999875

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.7e-09  Score=77.56  Aligned_cols=50  Identities=12%  Similarity=0.114  Sum_probs=41.1

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .||+||++||.++++|+. ++..... ....|+.||+||++||+|++.|+..
T Consensus        12 ~Er~RR~~in~~f~~L~~lvP~~~~~-~~~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_          12 VERRRRDKINNWIVQLSKIIPDSSME-STKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCC-SSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccc-CCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            369999999999999999 5443322 2457999999999999999999864

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.09  E-value=9.7e-08  Score=70.70  Aligned_cols=46  Identities=15%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      ..|++||.+||.++++|+. ++..     ...|+.||+||++||+|++.|++
T Consensus        18 ~~Er~Rr~~in~~~~~L~~llP~~-----~~~k~sK~~iL~~Ai~YI~~Lq~   64 (68)
T d1mdya_          18 MRERRRLSKVNEAFETLKRSTSSN-----PNQRLPKVEILRNAIRYIEGLQA   64 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCSC-----TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999 4432     23689999999999999999875

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=9.4e-08  Score=71.74  Aligned_cols=46  Identities=7%  Similarity=0.099  Sum_probs=39.1

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      .|++||++||.++++|+. ++...    ...|+.||+||+.||+|++.|+.
T Consensus         8 ~Er~RR~~in~~f~~L~~llP~~~----~~~k~sK~~iL~~A~~yI~~L~~   54 (79)
T d1nlwa_           8 MEKNRRAHLRLSLEKLKGLVPLGP----DSSRHTTLSLLTKAKLHIKKLED   54 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCS----SSCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccCC----CCCCCCHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 54322    23689999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.9e-07  Score=70.52  Aligned_cols=45  Identities=16%  Similarity=0.170  Sum_probs=38.5

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .|++||++||.++++|+. ++      ....|+.||+||+.||.|++.|+.+
T Consensus        13 ~Er~RR~~in~~~~~L~~llP------~~~~k~~K~~iL~~a~~yI~~L~~~   58 (80)
T d1am9a_          13 IEKRYRSSINDKIIELKDLVV------GTEAKLNKSAVLRKAIDYIRFLQHS   58 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT------CSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCC------CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 43      1346999999999999999998753

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.9e-07  Score=70.23  Aligned_cols=47  Identities=13%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             HHHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccC
Q psy14691         62 ELTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITK  112 (332)
Q Consensus        62 EmEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~  112 (332)
                      +.|++||++||.++++|+. ++...    ...|+.||+||+.|++|++.|+.
T Consensus        12 ~~Er~RR~~in~~f~~Lr~llP~~~----~~~k~sK~~iL~~A~~yI~~L~~   59 (88)
T d1nkpa_          12 VLERQRRNELKRSFFALRDQIPELE----NNEKAPKVVILKKATAYILSVQA   59 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCGGGT----TCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCC----CCCccCHHHHHHHHHHHHHHHHH
Confidence            3479999999999999999 54332    23689999999999999999876

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.6e-07  Score=69.04  Aligned_cols=46  Identities=15%  Similarity=0.261  Sum_probs=38.8

Q ss_pred             HHHHhhhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         63 LTVRHLHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        63 mEKRRRaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      .|++||++||.++++|+. ++..     ...|+.|++||+.||.|++.|+..
T Consensus         9 ~Er~RR~~in~~f~~L~~llP~~-----~~~k~sK~~iL~~A~~yI~~L~~~   55 (83)
T d1nkpb_           9 LERKRRDHIKDSFHSLRDSVPSL-----QGEKASRAQILDKATEYIQYMRRK   55 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSGGG-----TTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999 5432     225899999999999999988753

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.00011  Score=52.79  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=32.8

Q ss_pred             hhccCCCCCCchh-hHHhhhcccccchhhhhhhHHHHHHHHhhccCC
Q psy14691         68 LHRITKPHDPTEE-VQRFQAEGENINKLEKADILELTVRHLHRITKP  113 (332)
Q Consensus        68 RaRIN~sL~eLK~-le~~~k~~s~~sKLEKADILEMTVkyLK~Lq~q  113 (332)
                      |++||..+..|+. ++.      ...|..||+||+.|++|++.|+++
T Consensus         1 R~~in~~f~~L~~lvP~------~~~K~~Ka~iL~~Ai~YI~~Lq~~   41 (61)
T d1uklc_           1 RSSINDKIIELKDLVMG------TDAKMHKSGVLRKAIDYIKYLQQV   41 (61)
T ss_dssp             CCCHHHHHHHHHHHHSC------SSCCCCTTTHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCC------CCCcccHHHHHHHHHHHHHHHHHH
Confidence            6789988888888 431      136999999999999999999864