Psyllid ID: psy14771

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQRS
Secondary Structure (PSIPRED)
cccEEEEEEEcEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEHcEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MDGDEVLLFERATFLVishcqrkehrdiHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQRS
Flexible Loop (DISEMBL)
MDGDEVLLFERAtflvishcqrkehrdihrfEKISNIIKQFklsskwlprfIQWKYATLSLQRS
Low Complexity Region (SEG)
MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQRS
Disordered region (IsUnstruct)
*****VLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATL*****
Disordered Region (DISOPRED)
MDGDEVLLFERATFLVISHCQRKE*R*IHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQ**
Disordered Region (DISEMBL)
MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQRS
Disordered Region (DISPRO)
MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQ**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYATLSLQRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
Q63486	313	Ras-related GTP-binding p	yes	N/A	0.828	0.169	0.735	4e-14
Q80X95	313	Ras-related GTP-binding p	yes	N/A	0.828	0.169	0.735	4e-14
Q7L523	313	Ras-related GTP-binding p	yes	N/A	0.828	0.169	0.735	4e-14
Q3SX43	313	Ras-related GTP-binding p	no	N/A	0.828	0.169	0.735	4e-14
Q63487	374	Ras-related GTP-binding p	no	N/A	0.828	0.141	0.735	1e-13
Q6NTA4	374	Ras-related GTP-binding p	no	N/A	0.828	0.141	0.735	1e-13
Q5VZM2	374	Ras-related GTP-binding p	no	N/A	0.828	0.141	0.735	1e-13
Q54IK1	301	Ras-related GTP-binding p	yes	N/A	0.671	0.142	0.744	1e-11
O74824	308	GTP-binding protein gtr1	yes	N/A	0.781	0.162	0.566	9e-07

>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.
Rattus norvegicus (taxid: 10116)

>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.

Mus musculus (taxid: 10090)

>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death. May alternatively act as a cellular target for adenovirus E3-14.7K, an inhibitor of TNF-alpha functions, thereby affecting cell death.

Homo sapiens (taxid: 9606)

>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 42/53 (79%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQ 250

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway. May play a direct role in a TNF-alpha signaling pathway leading to induction of cell death.

Bos taurus (taxid: 9913)

>sp|Q63487|RRAGB_RAT Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS   L    Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q6NTA4|RRAGB_MOUSE Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS   L    Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Mus musculus (taxid: 10090)

>sp|Q5VZM2|RRAGB_HUMAN Ras-related GTP-binding protein B OS=Homo sapiens GN=RRAGB PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           ++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS   L    Q
Sbjct: 259 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQ 311

Has guanine nucleotide-binding activity but undetectable intrinsic GTPase activity. Required for the amino acid-induced relocalization of mTORC1 to the lysosomes and its subsequent activation by the GTPase RHEB. This is a crucial step in the activation of the TOR signaling cascade by amino acids. Involved in the RCC1/Ran-GTPase pathway. Involved in the RCC1/Ran-GTPase pathway.

Homo sapiens (taxid: 9606)

>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum GN=ragA PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 2   DGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS 44
           + DEV+LFE+ATFLVISH  RK H+D+HRFEKIS IIKQF LS
Sbjct: 194 EADEVVLFEKATFLVISHSARKVHKDVHRFEKISTIIKQFFLS 236

Dictyostelium discoideum (taxid: 44689)

>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtr1 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 3/53 (5%)

Query: 6   VLLFERATFLVISH--CQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRFIQWK 55
           V+LFER TFLVIS    +     D HRFEKISNI+KQFKLS SK   +F  ++
Sbjct: 198 VILFERTTFLVISSYSSESNPATDAHRFEKISNIVKQFKLSCSKMQAQFTTFE 250

GTPase. Component of the GSE complex, a GTPase complex required for intracellular sorting of GAP1 out of the endosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
332373282	305	unknown [Dendroctonus ponderosae]	0.796	0.167	0.826	3e-16
390331702	305	PREDICTED: ras-related GTP-binding prote	0.828	0.173	0.792	6e-16
291241505	334	PREDICTED: Ras-related GTP binding A-lik	0.828	0.158	0.792	9e-16
260796645	306	hypothetical protein BRAFLDRAFT_123649 [	0.828	0.173	0.792	1e-15
91092538	308	PREDICTED: similar to Ras-related GTP bi	0.796	0.165	0.807	2e-15
332028816	133	Ras-related GTP-binding protein A [Acrom	0.796	0.383	0.788	2e-15
347969005	393	AGAP002991-PA [Anopheles gambiae str. PE	0.796	0.129	0.807	3e-15
157115327	356	hypothetical protein AaeL_AAEL001188 [Ae	0.796	0.143	0.807	3e-15
328716589	254	PREDICTED: ras-related GTP-binding prote	0.796	0.200	0.826	4e-15
170043319	328	GTP-binding protein GTR1 [Culex quinquef	0.75	0.146	0.833	4e-15

>gi|332373282|gb|AEE61782.1| unknown [Dendroctonus ponderosae]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 47/52 (90%), Gaps = 1/52 (1%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
           +D DEVLLFERATFLVISHCQRKEHRD+HRFEK+SNIIKQFKLS SK   +F
Sbjct: 193 VDADEVLLFERATFLVISHCQRKEHRDVHRFEKVSNIIKQFKLSCSKLAAQF 244

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390331702|ref|XP_792836.3| PREDICTED: ras-related GTP-binding protein A-like [Strongylocentrotus purpuratus]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 45/53 (84%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           +D DEVLLFERATFLVISHCQR+EHRD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 193 IDADEVLLFERATFLVISHCQRREHRDVHRFEKISNIIKQFKLSCSKLAASFQ 245

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|291241505|ref|XP_002740649.1| PREDICTED: Ras-related GTP binding A-like [Saccoglossus kowalevskii]

 Score = 87.8 bits (216), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 44/53 (83%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           +D DEVLLFERATFLVISHCQRK HRD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 223 IDADEVLLFERATFLVISHCQRKPHRDVHRFEKISNIIKQFKLSCSKLAAAFQ 275

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|260796645|ref|XP_002593315.1| hypothetical protein BRAFLDRAFT_123649 [Branchiostoma floridae] gi|229278539|gb|EEN49326.1| hypothetical protein BRAFLDRAFT_123649 [Branchiostoma floridae]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 44/53 (83%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQ 53
           +D DEVLLFERATFLVISHCQRK HRD+HRFEKISNIIKQFKLS   L    Q
Sbjct: 193 IDADEVLLFERATFLVISHCQRKPHRDVHRFEKISNIIKQFKLSCSKLAASFQ 245

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91092538|ref|XP_967850.1| PREDICTED: similar to Ras-related GTP binding A [Tribolium castaneum] gi|270006620|gb|EFA03068.1| hypothetical protein TcasGA2_TC010924 [Tribolium castaneum]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 46/52 (88%), Gaps = 1/52 (1%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
           +D DEVLLFERATFLVISHCQRK HRD+HRFEK+SNIIKQFKLS SK   +F
Sbjct: 193 VDADEVLLFERATFLVISHCQRKHHRDVHRFEKVSNIIKQFKLSCSKLAAQF 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028816|gb|EGI68845.1| Ras-related GTP-binding protein A [Acromyrmex echinatior]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 46/52 (88%), Gaps = 1/52 (1%)

Query: 1  MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
          +D DEVLLFERATFLVISHCQR+ HRD+HRFEK+SNIIKQFKLS SK   +F
Sbjct: 20 IDADEVLLFERATFLVISHCQRQFHRDVHRFEKVSNIIKQFKLSCSKLAAQF 71

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969005|ref|XP_311898.4| AGAP002991-PA [Anopheles gambiae str. PEST] gi|333467741|gb|EAA08106.4| AGAP002991-PA [Anopheles gambiae str. PEST]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 46/52 (88%), Gaps = 1/52 (1%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
           +D DEVLLFERATFLVISHCQRK+HRD HRFEK+SNIIKQFKLS SK   +F
Sbjct: 193 VDADEVLLFERATFLVISHCQRKQHRDSHRFEKVSNIIKQFKLSCSKLGAKF 244

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115327|ref|XP_001658202.1| hypothetical protein AaeL_AAEL001188 [Aedes aegypti] gi|108883525|gb|EAT47750.1| AAEL001188-PA [Aedes aegypti]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/52 (80%), Positives = 46/52 (88%), Gaps = 1/52 (1%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
           +D DEVLLFERATFLVISHCQRK+HRD HRFEK+SNIIKQFKLS SK   +F
Sbjct: 193 VDADEVLLFERATFLVISHCQRKQHRDSHRFEKVSNIIKQFKLSCSKLGAKF 244

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716589|ref|XP_001952502.2| PREDICTED: ras-related GTP-binding protein A-like [Acyrthosiphon pisum]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%), Gaps = 1/52 (1%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
           MDGDEVLLFERATFLVISHCQR   RDIHRFEK+SNIIKQFKLS SK   +F
Sbjct: 195 MDGDEVLLFERATFLVISHCQRNLQRDIHRFEKVSNIIKQFKLSCSKVAAQF 246

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043319|ref|XP_001849340.1| GTP-binding protein GTR1 [Culex quinquefasciatus] gi|167866696|gb|EDS30079.1| GTP-binding protein GTR1 [Culex quinquefasciatus]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWL 48
           +D DEVLLFERATFLVISHCQRK+HRD HRFEK+SNIIKQFKLS   L
Sbjct: 161 VDADEVLLFERATFLVISHCQRKQHRDSHRFEKVSNIIKQFKLSCSKL 208

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
UNIPROTKB|F1NS58	296	RRAGB "Uncharacterized protein	0.796	0.172	0.788	1.4e-14
UNIPROTKB|G5E6C1	267	LOC539009 "Uncharacterized pro	0.796	0.191	0.769	1.4e-14
FB|FBgn0037647	311	RagA-B "Ras-related GTP bindin	0.796	0.163	0.730	1.9e-14
UNIPROTKB|F1NS59	315	RRAGB "Uncharacterized protein	0.796	0.161	0.788	2.1e-14
UNIPROTKB|Q3SX43	313	RRAGA "Ras-related GTP-binding	0.796	0.162	0.769	2.6e-14
UNIPROTKB|Q7L523	313	RRAGA "Ras-related GTP-binding	0.796	0.162	0.769	2.6e-14
MGI|MGI:1915691	313	Rraga "Ras-related GTP binding	0.796	0.162	0.769	2.6e-14
RGD|619804	313	Rraga "Ras-related GTP binding	0.796	0.162	0.769	2.6e-14
UNIPROTKB|F2Z5Q5	314	RRAGA "Uncharacterized protein	0.796	0.162	0.769	2.6e-14
UNIPROTKB|I3LGG1	244	LOC100620759 "Uncharacterized	0.796	0.209	0.769	3.8e-14

UNIPROTKB|F1NS58 RRAGB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 41/52 (78%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RDIHRFEKISNIIKQFKLS SK    F
Sbjct:   181 IEADEVLLFERATFLVISHYQCKEQRDIHRFEKISNIIKQFKLSCSKLAASF 232

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G5E6C1 LOC539009 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   152 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLATSF 203

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

FB|FBgn0037647 RagA-B "Ras-related GTP binding A/B ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 38/52 (73%), Positives = 45/52 (86%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFE+ATFLVISHCQ K++RD HRFEK+SNIIKQFKLS SK   +F
Sbjct:   193 IEADEVLLFEKATFLVISHCQSKKNRDSHRFEKVSNIIKQFKLSCSKLGAKF 244

GO:0003924 "GTPase activity" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0032008 "positive regulation of TOR signaling cascade" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

UNIPROTKB|F1NS59 RRAGB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 41/52 (78%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RDIHRFEKISNIIKQFKLS SK    F
Sbjct:   200 IEADEVLLFERATFLVISHYQCKEQRDIHRFEKISNIIKQFKLSCSKLAASF 251

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q3SX43 RRAGA "Ras-related GTP-binding protein A" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 249

GO:0005764 "lysosome" evidence=ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISS

GO:0034613 "cellular protein localization" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q7L523 RRAGA "Ras-related GTP-binding protein A" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 249

GO:0006915 "apoptotic process" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0019048 "virus-host interaction" evidence=IDA

GO:0045919 "positive regulation of cytolysis" evidence=IDA

GO:0051219 "phosphoprotein binding" evidence=IDA

GO:0008219 "cell death" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0071230 "cellular response to amino acid stimulus" evidence=IMP

GO:0032008 "positive regulation of TOR signaling cascade" evidence=NAS

GO:0034613 "cellular protein localization" evidence=IMP

GO:0005764 "lysosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1915691 Rraga "Ras-related GTP binding A" [Mus musculus (taxid:10090)]

 Score = 186 (70.5 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 249

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005764 "lysosome" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008219 "cell death" evidence=ISO

GO:0019048 "virus-host interaction" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042268 "regulation of cytolysis" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045919 "positive regulation of cytolysis" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051219 "phosphoprotein binding" evidence=ISO

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO

RGD|619804 Rraga "Ras-related GTP binding A" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   198 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 249

GO:0005525 "GTP binding" evidence=ISO;ISS;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005764 "lysosome" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008219 "cell death" evidence=ISO;ISS

GO:0019048 "virus-host interaction" evidence=ISO;ISS

GO:0034613 "cellular protein localization" evidence=ISO;ISS

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045919 "positive regulation of cytolysis" evidence=ISO;ISS

GO:0046982 "protein heterodimerization activity" evidence=ISO;ISS

GO:0051219 "phosphoprotein binding" evidence=ISO;ISS

GO:0071230 "cellular response to amino acid stimulus" evidence=ISO;ISS

UNIPROTKB|F2Z5Q5 RRAGA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 186 (70.5 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 40/52 (76%), Positives = 43/52 (82%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD+HRFEKISNIIKQFKLS SK    F
Sbjct:   199 IEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASF 250

GO:0071230 "cellular response to amino acid stimulus" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045919 "positive regulation of cytolysis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|I3LGG1 LOC100620759 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 40/52 (76%), Positives = 42/52 (80%)

Query:     1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLS-SKWLPRF 51
             ++ DEVLLFERATFLVISH Q KE RD HRFEKISNIIKQFKLS SK    F
Sbjct:   129 IEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASF 180

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O74824	GTR1_SCHPO	No assigned EC number	0.5660	0.7812	0.1623	yes	N/A
Q54IK1	RRAGA_DICDI	No assigned EC number	0.7441	0.6718	0.1428	yes	N/A
Q7L523	RRAGA_HUMAN	No assigned EC number	0.7358	0.8281	0.1693	yes	N/A
Q63486	RRAGA_RAT	No assigned EC number	0.7358	0.8281	0.1693	yes	N/A
Q80X95	RRAGA_MOUSE	No assigned EC number	0.7358	0.8281	0.1693	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	5e-22
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	4e-10

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score = 85.0 bits (211), Expect = 5e-22
 Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 2/45 (4%)

Query: 2   DGDEVLLFERATFLVISHCQRKE--HRDIHRFEKISNIIKQFKLS 44
           + DEV+LFERATFLVISH  RKE    D HRFEKISNIIKQFKLS
Sbjct: 191 EADEVVLFERATFLVISHSSRKEASALDPHRFEKISNIIKQFKLS 235

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 52.2 bits (126), Expect = 4e-10
 Identities = 19/38 (50%), Positives = 24/38 (63%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNII 38
            + +EV LFER+TFLVI+   R       R+EK SNII
Sbjct: 193 SNAEEVFLFERSTFLVIATDSRSPVDIPQRYEKCSNII 230

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
KOG3886|consensus	295		99.83
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.3

>KOG3886|consensus

Probab=99.83  E-value=2.3e-22  Score=150.14  Aligned_cols=58  Identities=62%  Similarity=0.749  Sum_probs=55.3

Q ss_pred             CCceEEEEEeceeeEEEEecccCCCCCCchHHHHHHHHHHHHHhhccCcCcceeEEEE
Q psy14771          1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYAT   58 (64)
Q Consensus         1 ~~A~EVvLFErtTFLVIs~~~~~~~~d~~RFEkISnIiK~FKlScsk~~~~f~~~~~~   58 (64)
                      ++|+|||||||+|||||||.+..+++|.|||||||||+||||+||+|++++|++++..
T Consensus       195 ~ea~eviLfEr~tflvI~~~q~~~~~~~hrfekisnI~kqfk~sctk~~~~f~s~~~~  252 (295)
T KOG3886|consen  195 LEALEVILFERATFLVISHYQIKEMRDAHRFEKISNIIKQFKLSCTKLNADFDSMEVR  252 (295)
T ss_pred             HhHHHHHHHHhhhheeeehhhhhccccccccccHHHHHHHhhcceeecccccchhhee
Confidence            4799999999999999999999999999999999999999999999999999998753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.30  E-value=1.2e-12  Score=93.26  Aligned_cols=38  Identities=53%  Similarity=0.828  Sum_probs=28.7

Q ss_pred             CCceEEEEEeceeeEEEEecccCCC--CCCchHHHHHHHH
Q psy14771          1 MDGDEVLLFERATFLVISHCQRKEH--RDIHRFEKISNII   38 (64)
Q Consensus         1 ~~A~EVvLFErtTFLVIs~~~~~~~--~d~~RFEkISnIi   38 (64)
                      |+|+||+||||+|||+||++++.+.  .|++|||++||||
T Consensus       193 c~a~ev~LFd~~T~L~Ia~ds~~~~~~~~~~~fE~~S~ii  232 (232)
T PF04670_consen  193 CNADEVFLFDRSTFLYIATDSRSPVDERDMQRFEKCSDII  232 (232)
T ss_dssp             CTEEEEEEEETTT--ECEE-S-S------HHHHHHHHHHH
T ss_pred             cCCcEEEEEeeeeEEEEEeccCCCccccccccHHHHhhcC
Confidence            7999999999999999999996554  5799999999997

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
4arz_A	310	The Crystal Structure Of Gtr1p-Gtr2p Complexed With		2e-04

>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With Gtp-Gdp Length = 310

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLS 44
           M+  E++LFER TFLVI     +   + H             RFEKISNI+K FK S
Sbjct: 200 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQS 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	1e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-10

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFK 42
              ++  LF+  + + +S        DI  +E  S  I    
Sbjct: 190 SKIEKAFLFDVNSKIYVSTDSN--PVDIQMYEVCSEFIDVTI 229

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 51.9 bits (124), Expect = 4e-10
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 1   MDGDEVLLFERATFLVISHCQRKEHRDIH-------------RFEKISNIIKQFKLSSKW 47
           M+  E++LFER TFLVI     +   + H             RFEKISNI+K FK S   
Sbjct: 197 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTK 256

Query: 48  L 48
           L
Sbjct: 257 L 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.55
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.79

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.55  E-value=4.9e-15  Score=102.82  Aligned_cols=58  Identities=43%  Similarity=0.539  Sum_probs=50.2

Q ss_pred             CCceEEEEEeceeeEEEEecccCC-------------CCCCchHHHHHHHHHHHHHhhccCcCcceeEEEE
Q psy14771          1 MDGDEVLLFERATFLVISHCQRKE-------------HRDIHRFEKISNIIKQFKLSSKWLPRFIQWKYAT   58 (64)
Q Consensus         1 ~~A~EVvLFErtTFLVIs~~~~~~-------------~~d~~RFEkISnIiK~FKlScsk~~~~f~~~~~~   58 (64)
                      |+++|++|||+.|||+|++.+...             ..+++|||+||+|+|+||+||+|.+++|++|+.+
T Consensus       197 ~~~~~~~l~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~i~~~~~~~~~~~~~~~~~~~~~  267 (307)
T 3r7w_A          197 MNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVLLDPKRFEKISNIMKNFKQSCTKLKSGFKTLILN  267 (307)
T ss_dssp             HTEEEEEEEETTTCCEEEECC-----------------CCTTHHHHHHHHHHHHHHHHGGGTSCEEEEEET
T ss_pred             cCCcEEEEEeeeeEEEEEecCCcccccccccccccccccCcHHHHHHHHHHHHHHHHHHhhhccCceEEEe
Confidence            468999999999999999987653             3489999999999999999999999999999875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.79  E-value=1.7e-09  Score=79.40  Aligned_cols=40  Identities=20%  Similarity=0.235  Sum_probs=36.4

Q ss_pred             CCceEEEEEeceeeEEEEecccCCCCCCchHHHHHHHHHHHH
Q psy14771          1 MDGDEVLLFERATFLVISHCQRKEHRDIHRFEKISNIIKQFK   42 (64)
Q Consensus         1 ~~A~EVvLFErtTFLVIs~~~~~~~~d~~RFEkISnIiK~FK   42 (64)
                      |+|+||+|||++|||+||++++  +.|.+|||++|++|.-+-
T Consensus       190 ~~~~~~~LFd~~t~l~iatds~--~~d~~~ye~csd~idv~~  229 (331)
T 3r7w_B          190 SKIEKAFLFDVNSKIYVSTDSN--PVDIQMYEVCSEFIDVTI  229 (331)
T ss_dssp             SSEEEEEEEESSSCCCSEECSS--CCCHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEEeccEEEEEcCCC--CcchhHHHHHHHHHHHHH
Confidence            7899999999999999999885  678999999999998663

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00