Psyllid ID: psy14785

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLELEN
Secondary Structure (PSIPRED)
ccccccHHHHHccHHHHHHHccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHcccccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHccHHHHHHHccccccccccHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHEEEEccccccccccccccccHHHHHHcccccccHHccccccccEEEEcccHHHHHHHHHHccccccEccccccccHHccc
Coil and Loop (DISEMBL)
MMANTDLARLLKSEEIKKVLrrpirgvrrasrklnpltnkrmmlrlnpfAQVTIRSAIISEEKRKLAREAKLAEkrgvsttsksllgvprsaiISEEKRKLAREAKLAEKrgvsttskylvgvpatfYLHHYLytrggqtgnrgshhrnrGYAAIrkqvypsdseedhhktgnckvwnvKNGIGKLLQRAlgsethfrvdpltpdclelen
Flexible Loop (DISEMBL)
mmantdlarllkseeikkvlrrpirgvrrasrklnpltnkrmmlrlnpfaqVTIRSAIISEEKRKLAREaklaekrgvsttsksllgvprsaiiseekrKLAREAKlaekrgvsttskylvGVPATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSdseedhhktgnckvwnvKNGIGKLLQRalgsethfrvdpltpdclelen
Low Complexity Region (SEG)
MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLELEN
Disordered region (IsUnstruct)
****************************************RMMLRLNPFAQVTIRSAII*******************************************************TTSKYLVGVPATFYLHHYLYTRGG********************************TGNCKVWNVKNGIGKLLQRALGSETHFRVDP**********
Disordered Region (DISOPRED)
MMANTDLARLLKSEEIKKV*****************LTNKRMMLRLNPFAQVT********************************************************************GVPATFYLHHYLYT****************YAAI****************GNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLEL**
Disordered Region (DISEMBL)
MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKL***************SKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQV***********TGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLELEN
Disordered Region (DISPRO)
**ANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRG*S*T****LGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTRGG**********NRGYAAIRKQVYPSDSE****KTGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLEL**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLVGVPATFYLHHYLYTRGGQTGNRGSHHRNRGYAAIRKQVYPSDSEEDHHKTGNCKVWNVKNGIGKLLQRALGSETHFRVDPLTPDCLELEN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
P09180	401	60S ribosomal protein L4	yes	N/A	0.459	0.241	0.474	2e-15
P49165	386	60S ribosomal protein L4	N/A	N/A	0.374	0.204	0.493	5e-12
P08429	396	60S ribosomal protein L4-	N/A	N/A	0.483	0.257	0.403	3e-11
P02385	401	60S ribosomal protein L4-	N/A	N/A	0.502	0.264	0.412	3e-11
Q58DW0	422	60S ribosomal protein L4	yes	N/A	0.492	0.246	0.349	4e-09
P50878	421	60S ribosomal protein L4	yes	N/A	0.293	0.147	0.467	1e-08
Q9D8E6	419	60S ribosomal protein L4	yes	N/A	0.293	0.147	0.467	2e-08
P36578	427	60S ribosomal protein L4	yes	N/A	0.293	0.145	0.467	2e-08
Q5RCR3	427	60S ribosomal protein L4	yes	N/A	0.293	0.145	0.467	2e-08
Q4R5P9	427	60S ribosomal protein L4	N/A	N/A	0.293	0.145	0.492	7e-08

>sp|P09180|RL4_DROME 60S ribosomal protein L4 OS=Drosophila melanogaster GN=RpL4 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 63/97 (64%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLKSEEI+KVLR P + V R+ R+LNPLTN R +++LNP+A+V  R A ++ 
Sbjct: 287 MANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAA 346

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEK 98
           EKR +A+    A+K+ V         V   A  +  K
Sbjct: 347 EKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAK 383

Drosophila melanogaster (taxid: 7227)

>sp|P49165|RL4_URECA 60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 54/79 (68%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+RLLKS+EI+  LR P +   R  +K NPL N R+M+RLNPFA     +A   E
Sbjct: 283 MTNTDLSRLLKSDEIQNALREPKKDKARRLQKKNPLKNYRVMMRLNPFAGAQKAAAKAVE 342

Query: 62  EKRKLAREAKLAEKRGVST 80
           ++R   ++AKL +KRG++T
Sbjct: 343 QRRLKEKQAKLDQKRGIAT 361

Urechis caupo (taxid: 6431)

>sp|P08429|RL4A_XENLA 60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-a PE=2 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 63/104 (60%), Gaps = 2/104 (1%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL R+LKS+EI++ LR P + V+R   K NPL N R+M+RLNP+A+   R AI+ +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREA 105
            +   A+E K  +  G     K L    +   +++ K++ AREA
Sbjct: 348 LENIKAKEKKPDD--GKPKAKKPLDAKTKMIKLAKAKKRQAREA 389

Xenopus laevis (taxid: 8355)

>sp|P02385|RL4B_XENLA 60S ribosomal protein L4-B OS=Xenopus laevis GN=rpl4-b PE=2 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 3/109 (2%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL R+LKS+EI++ LR P + V+R   K NPL N R+M+RLNP+A+   R AI+ +
Sbjct: 288 MTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQ 347

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAR-EAKLAE 109
            +   A+E K  +  G     K L    +   +++ K++ AR EAK AE
Sbjct: 348 LENIKAKEKKPDD--GKPKAKKPLDAKTKMIKLAKAKKRQARAEAKTAE 394

Xenopus laevis (taxid: 8355)

>sp|Q58DW0|RL4_BOVIN 60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKL 107
            +    R  K A      +  K + G  +  ++  +++K   + KL
Sbjct: 344 ARNHKIRMDKAAAALEAKSDQKGVQG--KKPVVGNKEKKAVGDKKL 387

Bos taurus (taxid: 9913)

>sp|P50878|RL4_RAT 60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query: 62  EK 63
            +
Sbjct: 344 AR 345

Rattus norvegicus (taxid: 10116)

>sp|Q9D8E6|RL4_MOUSE 60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query: 62  EK 63
            +
Sbjct: 344 AR 345

Mus musculus (taxid: 10090)

>sp|P36578|RL4_HUMAN 60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query: 62  EK 63
            +
Sbjct: 344 AR 345

Homo sapiens (taxid: 9606)

>sp|Q5RCR3|RL4_PONAB 60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 43/62 (69%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query: 62  EK 63
            +
Sbjct: 344 AR 345

Pongo abelii (taxid: 9601)

>sp|Q4R5P9|RL4_MACFA 60S ribosomal protein L4 OS=Macaca fascicularis GN=RPL4 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+ T+R   I  
Sbjct: 284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAK-TMRWNTILR 342

Query: 62  EKR 64
           + R
Sbjct: 343 QAR 345

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
70909603	404	ribosomal protein L4e [Biphyllus lunatus	0.488	0.254	0.514	5e-18
62083421	429	ribosomal protein L4 [Lysiphlebus testac	0.393	0.193	0.590	8e-18
357608927	455	ribosomal protein L4 [Danaus plexippus]	0.383	0.178	0.617	1e-17
332372556	407	unknown [Dendroctonus ponderosae]	0.454	0.235	0.540	2e-17
340725537	434	PREDICTED: 60S ribosomal protein L4-like	0.364	0.177	0.636	2e-17
350415276	434	PREDICTED: 60S ribosomal protein L4-like	0.364	0.177	0.636	2e-17
56462224	274	ribosomal protein 23 [Lonomia obliqua]	0.364	0.281	0.610	5e-17
315115489	308	ribosomal protein L4 [Euphydryas aurinia	0.364	0.25	0.623	1e-16
70909605	432	ribosomal protein L4e [Eucinetus sp. APV	0.369	0.180	0.589	2e-16
389608169	420	ribosomal protein L4 [Papilio xuthus]	0.383	0.192	0.580	2e-16

>gi|70909603|emb|CAJ17227.1| ribosomal protein L4e [Biphyllus lunatus]

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 2/105 (1%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLK++EIKKVLR+P + V R  R+LNPLTN + MLRLNP+A V  R AI++ 
Sbjct: 287 MANTDLSRLLKADEIKKVLRKPQKKVVRRVRRLNPLTNTKAMLRLNPYAAVLKRQAILTV 346

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAK 106
           +KR+L RE  +A+KRG++  +     V R+A + E +R    +AK
Sbjct: 347 QKRQLQREELIAKKRGITLPNDH--AVIRTAKLQERRRDAILKAK 389

Source: Biphyllus lunatus

Species: Biphyllus lunatus

Genus: Biphyllus

Family: Biphyllidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083421|gb|AAX62435.1| ribosomal protein L4 [Lysiphlebus testaceipes]

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 64/83 (77%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDLAR+LKSE I+KVLR P + V RA +KLNPL N R ML+LNP+A VT R+AI++ 
Sbjct: 286 MANTDLARILKSEAIRKVLRAPRKKVVRAVKKLNPLNNTRAMLKLNPYAAVTKRAAILNA 345

Query: 62  EKRKLAREAKLAEKRGVSTTSKS 84
           +KR+ ARE  +A+KRG+    K+
Sbjct: 346 QKRQQAREIAIAKKRGIELPKKA 368

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608927|gb|EHJ66216.1| ribosomal protein L4 [Danaus plexippus]

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 60/81 (74%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLK +EI+KVLR P + V RA RKLNPL+N R MLRLNP+A V  R A++ +
Sbjct: 325 MANTDLSRLLKCDEIRKVLRAPNKRVVRAPRKLNPLSNARAMLRLNPYAAVLKRKAVLDQ 384

Query: 62  EKRKLAREAKLAEKRGVSTTS 82
            KR  AR   LAEKRG+S  S
Sbjct: 385 NKRNDARALALAEKRGISLPS 405

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372556|gb|AEE61420.1| unknown [Dendroctonus ponderosae]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/98 (54%), Positives = 71/98 (72%), Gaps = 2/98 (2%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M+NTDL+RLLK++EIK VLRRP + + R  R+LNPLTN + MLRLNP++ V  R AI+S 
Sbjct: 287 MSNTDLSRLLKADEIKAVLRRPQKKIVRRVRRLNPLTNAKAMLRLNPYSAVLKREAILSG 346

Query: 62  EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKR 99
           +KR LARE  LA+KRG++    S   V RSA +  ++R
Sbjct: 347 QKRSLAREELLAKKRGITLPETS--PVIRSAKLQAKRR 382

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725537|ref|XP_003401125.1| PREDICTED: 60S ribosomal protein L4-like [Bombus terrestris]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLKS+EI+KVLR P + V R+ +KLNPLTN R MLRLNP+A V  R+AI++ 
Sbjct: 286 MANTDLSRLLKSQEIRKVLRAPRKKVVRSVKKLNPLTNTRAMLRLNPYAAVLKRAAILTA 345

Query: 62  EKRKLAREAKLAEKRGV 78
           +KR+  R+  LAEKRGV
Sbjct: 346 KKRQQERDLALAEKRGV 362

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415276|ref|XP_003490589.1| PREDICTED: 60S ribosomal protein L4-like [Bombus impatiens]

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLKS+EI+KVLR P + V R+ +KLNPLTN R MLRLNP+A V  R+AI++ 
Sbjct: 286 MANTDLSRLLKSQEIRKVLRAPRKKVVRSVKKLNPLTNTRAMLRLNPYAAVLKRAAILTA 345

Query: 62  EKRKLAREAKLAEKRGV 78
           +KR+  R+  LAEKRGV
Sbjct: 346 KKRQQERDLALAEKRGV 362

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56462224|gb|AAV91395.1| ribosomal protein 23 [Lonomia obliqua]

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/77 (61%), Positives = 62/77 (80%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLKSEEI++VLR PI+ V RA+RKLNPLTN + ML+LNP+A V  + A++ +
Sbjct: 149 MANTDLSRLLKSEEIRRVLRAPIKRVVRATRKLNPLTNTKAMLKLNPYAAVLKKKAVLDQ 208

Query: 62  EKRKLAREAKLAEKRGV 78
            KRK  R  ++AEKRG+
Sbjct: 209 VKRKNKRALEVAEKRGI 225

Source: Lonomia obliqua

Species: Lonomia obliqua

Genus: Lonomia

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115489|gb|ADT80717.1| ribosomal protein L4 [Euphydryas aurinia]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/77 (62%), Positives = 59/77 (76%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL+RLLK +EI+KVLR P + V RA+RKLNPLTN R MLRLNPFA V  R AI+ +
Sbjct: 176 MANTDLSRLLKCDEIRKVLRAPNKRVVRATRKLNPLTNSRAMLRLNPFAAVLKRKAILDQ 235

Query: 62  EKRKLAREAKLAEKRGV 78
           +++   R   LAEKRG+
Sbjct: 236 QRKNNLRALALAEKRGI 252

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909605|emb|CAJ17228.1| ribosomal protein L4e [Eucinetus sp. APV-2005]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 61/78 (78%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDLARLLKS+EIK VLR P + V R  R+LNPL+N R +L+LNP+A V  R AI++ 
Sbjct: 287 MANTDLARLLKSDEIKAVLRAPQKKVIRRVRRLNPLSNTRALLKLNPYAAVLKRQAILAT 346

Query: 62  EKRKLAREAKLAEKRGVS 79
           +KR+L R+  LA+KRG++
Sbjct: 347 QKRQLVRDETLAKKRGIT 364

Source: Eucinetus sp. APV-2005

Species: Eucinetus sp. APV-2005

Genus: Eucinetus

Family: Eucinetidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608169|dbj|BAM17696.1| ribosomal protein L4 [Papilio xuthus]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 61/81 (75%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MANTDL RLLKSEEI+KVLR P + V R++RKLNPLTN + MLRLNP++ V  R A++ +
Sbjct: 287 MANTDLTRLLKSEEIRKVLRAPNKRVIRSTRKLNPLTNTKAMLRLNPYSAVLRRKAVLDQ 346

Query: 62  EKRKLAREAKLAEKRGVSTTS 82
           +++  AR   LAEKRG+   S
Sbjct: 347 QRKSNARALALAEKRGIKLPS 367

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
FB|FBgn0003279	401	RpL4 "Ribosomal protein L4" [D	0.521	0.274	0.463	3.8e-19
UNIPROTKB|Q5ZII1	421	RPL4 "Uncharacterized protein"	0.549	0.275	0.362	3.2e-12
MGI|MGI:1915141	419	Rpl4 "ribosomal protein L4" [M	0.559	0.281	0.341	4e-12
UNIPROTKB|Q58DW0	422	RPL4 "60S ribosomal protein L4	0.492	0.246	0.349	6.8e-12
UNIPROTKB|H3BM89	333	RPL4 "Ribosomal protein L4, is	0.559	0.354	0.362	7.9e-12
TAIR|locus:2074904	406	AT3G09630 [Arabidopsis thalian	0.393	0.204	0.423	1.3e-11
UNIPROTKB|E2R546	412	RPL4 "60S ribosomal protein L4	0.511	0.262	0.348	1.4e-11
UNIPROTKB|Q6P3V9	421	Rpl4 "Ribosomal protein L4" [R	0.488	0.244	0.371	1.4e-11
UNIPROTKB|P36578	427	RPL4 "60S ribosomal protein L4	0.559	0.276	0.362	1.5e-11
UNIPROTKB|G3MXR5	436	G3MXR5 "Uncharacterized protei	0.492	0.238	0.349	1.5e-11

FB|FBgn0003279 RpL4 "Ribosomal protein L4" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 51/110 (46%), Positives = 71/110 (64%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             MANTDL+RLLKSEEI+KVLR P + V R+ R+LNPLTN R +++LNP+A+V  R A ++ 
Sbjct:   287 MANTDLSRLLKSEEIRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAA 346

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKR 111
             EKR +A+    A+K+ V         V   A  +  K   AR+ K+A K+
Sbjct:   347 EKRTVAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKKVAAKK 396

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|Q5ZII1 RPL4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 45/124 (36%), Positives = 68/124 (54%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL R+L+S+EI+K LR P + + R   K NPL N R+M++LNP+A+   R+ I+  
Sbjct:   284 MTNTDLGRILRSQEIQKALRAPKKKIHRRVLKKNPLKNLRVMIKLNPYAKTMRRNTILRH 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLV 121
              + +  +E K A+ +  S TSK+ L        ++ K K A  +K A K      +K   
Sbjct:   344 AQNQKLKEEKKAKAKA-SVTSKAKLSAK-----AQTKAKPA--SKTAGKAAAKGPAKAPA 395

Query:   122 GVPA 125
               PA
Sbjct:   396 KAPA 399

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

MGI|MGI:1915141 Rpl4 "ribosomal protein L4" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 41/120 (34%), Positives = 66/120 (55%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   284 MMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLV 121
              +    R  KL E    +  +KS   VP     +++K  + ++ K  + +      K +V
Sbjct:   344 ARNHKLRVKKL-EAAATALATKSEKVVPEKGT-ADKKPAVGKKGKKVDAKKQKPAGKKVV 401

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=ISO

UNIPROTKB|Q58DW0 RPL4 "60S ribosomal protein L4" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 37/106 (34%), Positives = 60/106 (56%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   284 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKL 107
              +    R  K A      +  K + G  +  ++  +++K   + KL
Sbjct:   344 ARNHKIRMDKAAAALEAKSDQKGVQG--KKPVVGNKEKKAVGDKKL 387

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H3BM89 RPL4 "Ribosomal protein L4, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 45/124 (36%), Positives = 67/124 (54%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   190 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 249

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLV 121
              +    R  K A     +  +KS       A ++ +K  + ++ K A   GV    K LV
Sbjct:   250 ARNHKLRVDKAAAA-AAALQAKS----DEKAAVAGKKPVVGKKGKKAAV-GVKKQKKPLV 303

Query:   122 GVPA 125
             G  A
Sbjct:   304 GKKA 307

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

TAIR|locus:2074904 AT3G09630 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 36/85 (42%), Positives = 57/85 (67%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIR-GVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIIS 60
             M N DLAR++ S+EI+ V+  PI+   +RA  K NPL N  +ML+LNP+A+   R ++++
Sbjct:   290 MVNADLARIINSDEIQSVVN-PIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLA 348

Query:    61 EEKRKLAREAKLAEKRGVSTTSKSL 85
             E +R  A++ KLA+KR   T  ++L
Sbjct:   349 EAQRVKAKKEKLAKKRKTVTKEEAL 373

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

UNIPROTKB|E2R546 RPL4 "60S ribosomal protein L4" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 38/109 (34%), Positives = 61/109 (55%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   284 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEK 110
              K    R  K A      +  K + G  +  +  + K+ + ++A   +K
Sbjct:   344 AKNHKLRMDKAAAALEAKSEEKGVPG-KKPTVGKKGKKTVGKKAAATKK 391

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q6P3V9 Rpl4 "Ribosomal protein L4" [Rattus norvegicus (taxid:10116)]

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 39/105 (37%), Positives = 61/105 (58%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + ++R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   284 MMNTDLSRILKSPEIQRALRAPRKKIQRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAK 106
              +    R  KL E    +  +KS   VP      ++K  + ++ K
Sbjct:   344 ARNHKLRVKKL-EAAAAALAAKSEKIVPEKGA-GDKKPAVGKKGK 386

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P36578 RPL4 "60S ribosomal protein L4" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 45/124 (36%), Positives = 67/124 (54%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   284 MINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSKYLV 121
              +    R  K A     +  +KS       A ++ +K  + ++ K A   GV    K LV
Sbjct:   344 ARNHKLRVDKAAAA-AAALQAKS----DEKAAVAGKKPVVGKKGKKAAV-GVKKQKKPLV 397

Query:   122 GVPA 125
             G  A
Sbjct:   398 GKKA 401

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G3MXR5 G3MXR5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 1.5e-11, P = 1.5e-11
 Identities = 37/106 (34%), Positives = 59/106 (55%)

Query:     2 MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
             M NTDL+R+LKS EI++ LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct:   298 MLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 357

Query:    62 EKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKL 107
              +    R  K A      +  K + G  +  ++  +++K     KL
Sbjct:   358 ARNHKIRMDKAAAAVEAKSDQKGVQG--KKPVVGNKEKKAVGNKKL 401

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
pfam14374	80	pfam14374, Ribos_L4_asso_C, 60S ribosomal protein	2e-23
PLN00185	405	PLN00185, PLN00185, 60S ribosomal protein L4-1; Pr	3e-18
PTZ00428	381	PTZ00428, PTZ00428, 60S ribosomal protein L4; Prov	8e-15

>gnl|CDD|222716 pfam14374, Ribos_L4_asso_C, 60S ribosomal protein L4 C-terminal domain

 Score = 88.8 bits (221), Expect = 2e-23
 Identities = 36/72 (50%), Positives = 52/72 (72%), Gaps = 1/72 (1%)

Query: 1  MMANTDLARLLKSEEIKKVLRRPIRGV-RRASRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
           MAN DL+RL+ S+EI+ VLR P +   RR  +K NPL N + ML+LNP+A+V  R+A++
Sbjct: 9  KMANADLSRLINSDEIQSVLRAPKKKAKRRVVQKKNPLKNLQAMLKLNPYAKVARRAALL 68

Query: 60 SEEKRKLAREAK 71
          +E+KRK A+  K
Sbjct: 69 AEKKRKKAKAEK 80

This family is found at the very C-terminal of 60 ribosomal L4 proteins. Length = 80

>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional

 Score = 81.8 bits (202), Expect = 3e-18
 Identities = 33/75 (44%), Positives = 50/75 (66%)

Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M N DLAR++ S+E++ V+    + V+RA  K NPL N   ML+LNP+A+   R A+++E
Sbjct: 289 MVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAE 348

Query: 62  EKRKLAREAKLAEKR 76
             R  A++ KLA+KR
Sbjct: 349 AARVKAKKEKLAKKR 363

Length = 405

>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)

Query: 1   MMANTDLARLLKSEEIKKVLR-RPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
           +M N D+AR++ SEE++ VLR    +  +R  +K NPL N+R+ LRLNP A+   + A++
Sbjct: 282 LMTNADIARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVL 341

Query: 60  SEEKRKLAREAKLAEKRGVSTTSKSLL 86
           ++EK       K+  +R      K+ L
Sbjct: 342 AQEKATAKGAQKVKNRRARKKAKKARL 368

Length = 381

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
PF14374	80	Ribos_L4_asso_C: 60S ribosomal protein L4 C-termin	99.95
PLN00185	405	60S ribosomal protein L4-1; Provisional	99.89
PTZ00428	381	60S ribosomal protein L4; Provisional	99.88
KOG1475|consensus	363		99.49

>PF14374 Ribos_L4_asso_C: 60S ribosomal protein L4 C-terminal domain; PDB: 3O5H_D 3IZS_D 3O58_D 3IZR_D 4A17_C 4A1C_C 4A1E_C 4A1A_C

Probab=99.95  E-value=2.1e-30  Score=194.15  Aligned_cols=70  Identities=47%  Similarity=0.755  Sum_probs=60.6

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCcc-ccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHH
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRRA-SRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREA   70 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkRr-~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~   70 (211)
                      +||||||+|||||||||+||||+++.++++ ++|+|||||+++|+||||||+++++++++.++.+..++++
T Consensus         9 ~MtN~Dl~RiInSdEIQsvlr~~~~~~~r~~~~kkNPLkN~~~m~rLNPya~~~kr~~~~~~~~~~~~k~~   79 (80)
T PF14374_consen    9 KMTNADLSRIINSDEIQSVLRPPKKKPKRRSVQKKNPLKNLRAMLRLNPYAKVAKRAAILAQKKRKKKKAE   79 (80)
T ss_dssp             S-S---HHHHHHSHHHHCCCHHHHHCSSCCHHHCCCCCC-HHHCCCHHCHHHHHHHHCHSHHSCHHHHCHS
T ss_pred             hhccccHHHHhccHHHHHHHhcccccCcCCCCcCCCCcchHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcc
Confidence            699999999999999999999999999887 9999999999999999999999999999999887776654

>PLN00185 60S ribosomal protein L4-1; Provisional

Probab=99.89  E-value=1e-23  Score=194.56  Aligned_cols=84  Identities=39%  Similarity=0.597  Sum_probs=77.7

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVST   80 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~~~   80 (211)
                      +|||+||+|||||||||+||||++....++++|+|||||+++|+||||||+++++++++.++++..++++..++++....
T Consensus       288 ~m~n~dl~rii~S~eiq~~lr~~~~~~~~~~~kknplkn~~~~~~lnpya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (405)
T PLN00185        288 KMVNADLARIINSDEVQSVVNPIKKDVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEAARVKAKKEKLAKKRKQVS  367 (405)
T ss_pred             ccccccHHHHhccHHHHHHHhccCCccccchhhcCchHHHHHHHHhChHHHHHHHHHHHHHHHHHhcchhhHHHHhhhcc
Confidence            69999999999999999999999998889999999999999999999999999999999999999988888888887766


Q ss_pred             Cccc
Q psy14785         81 TSKS   84 (211)
Q Consensus        81 ~~kk   84 (211)
                      ++++
T Consensus       368 ~~~~  371 (405)
T PLN00185        368 KEEA  371 (405)
T ss_pred             hhhH
Confidence            6543

>PTZ00428 60S ribosomal protein L4; Provisional

Probab=99.88  E-value=1.4e-23  Score=192.33  Aligned_cols=78  Identities=37%  Similarity=0.595  Sum_probs=70.6

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCc-CCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPI-RGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGV   78 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppK-k~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~   78 (211)
                      +|||+||+|||||||||+||||++ +...++++|+|||||+++|+||||||+++++++++.++++..++.+..++++..
T Consensus       282 ~m~n~Dl~rii~S~eiq~~l~~~~~~~~~~~~~k~nplkn~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (381)
T PTZ00428        282 LMTNADIARIINSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQKVKNRRAR  360 (381)
T ss_pred             ccccccHHHHhccHHHHHHhccccccccccchhhcCCchHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            699999999999999999999996 577889999999999999999999999999999999998888877777765543

>KOG1475|consensus

Probab=99.49  E-value=4.6e-15  Score=135.23  Aligned_cols=62  Identities=27%  Similarity=0.420  Sum_probs=54.4

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCc--cccCCCccchHHHHhhcChHHHHHhHHHHHHHH
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRR--ASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEE   62 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkR--r~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qk   62 (211)
                      ||+|+||+|||+|||||++++++.....+  .+.|||||+|.++|.+||||++.++++..+...
T Consensus       282 i~~n~Dl~rii~Sdevqa~~de~~~v~~k~~~v~kKn~lk~~~v~~rlnPya~k~~aatk~~~~  345 (363)
T KOG1475|consen  282 IMSNADLSRIINSDELQAKSDEKGKVAGKKPVVGKKNKLKNKGVLKRLNPYAKKKAAATKKPAK  345 (363)
T ss_pred             hhhhhHHHHHHHHHHHHhhcccccccccccceeccccchhHHHHHHhhchHhHHHHHhhccCcc
Confidence            69999999999999999999998866644  688999999999999999999998877654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	211
3izr_D	405	Localization Of The Large Subunit Ribosomal Protein		2e-07
2zkr_c	421	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-07
4a17_C	410	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-05
1s1i_D	361	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-04
2ww9_H	362	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		1e-04
3izs_D	362	Localization Of The Large Subunit Ribosomal Protein		1e-04

>pdb|3IZR|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 405

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           MAN DL R++ S+E++ V++   + V+R  ++ NPL N   +L+LNP+     + A ++E
Sbjct: 289 MANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAE 348
Query: 62  EKRKLAREAKLAEKR 76
             R  AR+ KL  KR
Sbjct: 349 AARIKARKEKLDSKR 363

>pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 421

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 2   MANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISE 61
           M NTDL+R+LK     + LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ +
Sbjct: 284 MLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQ 343
Query: 62  EKRKLAREAKLA 73
            K    R  K A
Sbjct: 344 AKNHKLRMDKAA 355

>pdb|4A17|C Chain C, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRA-SRKLNPLTNKRMMLRLNPFAQVTIRSAII 59
           ++AN D+AR++ S E++ V++  + G      RK NPLTN   + +LNP A++    A  
Sbjct: 289 LLANADIARIINSNEVQSVVK--VAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKK 346
Query: 60  SEEKRKLAREAKLAEKRGVSTTSK 83
           + E  K  R+A L   R  + T K
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHK 370

>pdb|1S1I|D Chain D, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 361

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKL--NPLTNKRMMLRLNPFAQV 52
           +++ +D+ R++ S EI+  +R   +  ++ +  L  NPL NK+++LRLNP+A+V
Sbjct: 279 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 332

>pdb|2WW9|H Chain H, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKL--NPLTNKRMMLRLNPFAQV 52
           +++ +D+ R++ S EI+  +R   +  ++ +  L  NPL NK+++LRLNP+A+V
Sbjct: 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 333

>pdb|3IZS|D Chain D, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 362

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKL--NPLTNKRMMLRLNPFAQV 52
           +++ +D+ R++ S EI+  +R   +  ++ +  L  NPL NK+++LRLNP+A+V
Sbjct: 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKV 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
4a17_C	410	RPL4, ribosomal protein L3; eukaryotic ribosome, r	2e-19
3iz5_D	405	60S ribosomal protein L4 (L4P); eukaryotic ribosom	2e-17
2wwb_H	362	60S ribosomal protein L4-B; ribosome, protein EXIT	1e-16
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C Length = 410

 Score = 84.5 bits (208), Expect = 2e-19
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)

Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIIS 60
           ++AN D+AR++ S E++ V++          RK NPLTN   + +LNP A++    A  +
Sbjct: 289 LLANADIARIINSNEVQSVVK-VAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKA 347

Query: 61  EEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKR 111
            E  K  R+A L   R  + T K       +A     +  +A+  +     
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398

>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D Length = 362

 Score = 76.0 bits (186), Expect = 1e-16
 Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRAS--RKLNPLTNKRMMLRLNPFAQVTIRSAI 58
           +++ +D+ R++ S EI+  +R   +  ++ +   K NPL NK+++LRLNP+A+V     +
Sbjct: 280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKL 339

Query: 59  ISEEKRKLAREAKLAEKRGV 78
            S++  K   +        +
Sbjct: 340 GSKKAEKTGTKPAAVFAETL 359

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 421

 Score = 71.1 bits (173), Expect = 1e-14
 Identities = 35/118 (29%), Positives = 55/118 (46%)

Query: 1   MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIIS 60
            M NTDL+R+LK     + LR P + + R   K NPL N R+ML+LNP+A+   R+ I+ 
Sbjct: 283 KMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILR 342

Query: 61  EEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLAREAKLAEKRGVSTTSK 118
           + K    R  K A      +  K + G        ++   + +  K    +  + T K
Sbjct: 343 QAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKK 400

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 29/194 (14%), Positives = 57/194 (29%), Gaps = 51/194 (26%)

Query: 12  KSEEI-KKVLRRPIRGVRRASRKLNPLT-------NKRMMLRLNPFAQV------TIRSA 57
           + + +  K L    + + R     NP          +  +   + +  V      TI  +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 58  II----SEEKRKLAREAKLAEKRGVSTTSKSLLGVPRSAIISEEKRKLARE---AKLAEK 110
            +      E RK+     +         +  LL +    +I  +   +  +     L EK
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPP-SAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 111 RGVSTTSKYLVGVPATFYLHH-YLYTRGGQTGNRGSHHRN--RGYAAIRKQVYPSDS--- 164
           +   +T            +   YL  +  +  N  + HR+    Y   +   + SD    
Sbjct: 420 QPKEST----------ISIPSIYLELKV-KLENEYALHRSIVDHYNIPKT--FDSDDLIP 466

Query: 165 -EED--------HH 169
              D        HH
Sbjct: 467 PYLDQYFYSHIGHH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
4a17_C	410	RPL4, ribosomal protein L3; eukaryotic ribosome, r	99.86
3iz5_D	405	60S ribosomal protein L4 (L4P); eukaryotic ribosom	99.85
2wwb_H	362	60S ribosomal protein L4-B; ribosome, protein EXIT	99.84
2zkr_c	421	60S ribosomal protein L4; protein-RNA complex, 60S	99.84

>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C

Probab=99.86  E-value=5e-23  Score=188.87  Aligned_cols=85  Identities=33%  Similarity=0.486  Sum_probs=72.8

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAREAKLAEKRGVST   80 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa~~laKKR~~~~   80 (211)
                      +|+|+||+|||||||||+||||+ +..+++++|+|||||+++|+||||||++++++++..++....+.+..+.+++++..
T Consensus       289 ~~~n~dl~r~i~s~eiq~~~~~~-~~~~~~~~k~npl~n~~~~~~lnp~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (410)
T 4a17_C          289 LLANADIARIINSNEVQSVVKVA-GTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAK  367 (410)
T ss_dssp             SCSCCCHHHHHHSHHHHHHCCCC-CCCCCCCCCCCTTTCHHHHHHHCTHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHhCCHHHHHHhcCc-cccccccccCCCchhHHHHHhcCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhh
Confidence            69999999999999999999988 77778999999999999999999999999999998888777666666666665555


Q ss_pred             Cccccc
Q psy14785         81 TSKSLL   86 (211)
Q Consensus        81 ~~kka~   86 (211)
                      +.++.+
T Consensus       368 ~~~~~~  373 (410)
T 4a17_C          368 THKKGS  373 (410)
T ss_dssp             HHHHHH
T ss_pred             hHHHHH
Confidence            544443

>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D

Probab=99.84  E-value=7.3e-23  Score=185.17  Aligned_cols=68  Identities=31%  Similarity=0.539  Sum_probs=0.0

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCc--cccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHH
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRR--ASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLAR   68 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkR--r~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kK   68 (211)
                      +|+|+||+|||||||||+||||+++..++  .++|||||||+++|+||||||+++++++++.++++..++
T Consensus       280 ~m~n~dl~rii~S~eiq~~~r~~~~~~~~~~~~~k~npl~n~~~~~~lnpya~~~~~~~~~~~~~~~~~~  349 (362)
T 2wwb_H          280 IISTSDVTRIINSSEIQSAIRPAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGT  349 (362)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ccchhHHHHHhccHHHHHHhcccccccccccccccCCcchhHHHHHhcCHHHHHHHHHHHHHHHhcccch
Confidence            69999999999999999999999887765  788999999999999999999999999998888755444

>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.84  E-value=1.4e-22  Score=186.32  Aligned_cols=69  Identities=41%  Similarity=0.603  Sum_probs=0.0

Q ss_pred             CCcccchhhhcCcHHHHHHhcCCcCCCCccccCCCccchHHHHhhcChHHHHHhHHHHHHHHHHHHHHH
Q psy14785          1 MMANTDLARLLKSEEIKKVLRRPIRGVRRASRKLNPLTNKRMMLRLNPFAQVTIRSAIISEEKRKLARE   69 (211)
Q Consensus         1 kMTNADLsRIINSDEIQSVLRppKk~vkRr~qKKNPLKN~~aMLRLNPYAKv~RR~Ail~qkkr~~kKa   69 (211)
                      +|+|+||+|||||||||+||||+++.++++++|+|||+|+++|+||||||+++++++++.++++..+++
T Consensus       283 ~~~n~dl~rii~s~eiq~~l~~~~~~~~~~~~k~npl~n~~~~~~lnpya~~~~~~~~~~~~~~~~~~~  351 (421)
T 2zkr_c          283 KMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRM  351 (421)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccchhHHHHHhcCHHHHHHhcccccccccccccCCCchhHHHHHhcCHHHHHHHHHHHHHHHHhHHHHH
Confidence            699999999999999999999999888889999999999999999999999999999998888665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00